Query 034306
Match_columns 98
No_of_seqs 101 out of 121
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 20:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jmua1 d.63.1.2 (A:2-224) Thi 39.4 3.6 0.00026 27.6 0.5 15 43-57 37-51 (223)
2 d1d6za1 b.30.2.1 (A:301-724) C 30.9 4.9 0.00036 30.8 0.0 17 42-58 79-95 (424)
3 d2efva1 a.43.1.12 (A:6-87) Unc 28.3 9.7 0.0007 23.8 1.1 17 12-28 53-69 (82)
4 d1qd1a2 d.58.34.1 (A:181-326) 24.4 6 0.00043 26.9 -0.5 51 19-70 74-127 (146)
5 d1oh0a_ d.17.4.3 (A:) Delta-5- 21.2 5 0.00036 23.3 -1.3 11 41-51 114-124 (125)
6 d1w2za1 b.30.2.1 (A:207-647) C 20.4 10 0.00075 29.0 0.1 17 42-58 90-106 (441)
7 d1w6ga1 b.30.2.1 (A:212-628) C 17.6 12 0.00084 28.6 -0.3 17 42-58 83-99 (417)
8 d3dm8a1 d.17.4.20 (A:1-135) Un 17.5 18 0.0013 21.2 0.7 12 41-52 119-130 (135)
9 d2csba4 a.60.2.4 (A:465-519) T 16.4 36 0.0026 19.4 1.8 14 15-28 14-27 (55)
10 d2do3a1 b.34.5.5 (A:462-523) T 12.4 24 0.0018 20.6 0.3 19 40-58 6-24 (62)
No 1
>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.45 E-value=3.6 Score=27.62 Aligned_cols=15 Identities=13% Similarity=0.499 Sum_probs=13.4
Q ss_pred cccchhhHHHHhhcC
Q 034306 43 AFFDSADWALYKQGA 57 (98)
Q Consensus 43 kyFDSaD~aL~Kag~ 57 (98)
-|||+.|+.|.+++.
T Consensus 37 ~YfDtpd~~L~~~~~ 51 (223)
T d2jmua1 37 TYYDTSELSLMLSDH 51 (223)
T ss_dssp EEEECTTSHHHHTTC
T ss_pred EEEcCCChhHHhCCc
Confidence 599999999998875
No 2
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3 {Escherichia coli [TaxId: 562]}
Probab=30.93 E-value=4.9 Score=30.77 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=13.5
Q ss_pred ccccchhhHHHHhhcCC
Q 034306 42 HAFFDSADWALYKQGAG 58 (98)
Q Consensus 42 RkyFDSaD~aL~Kag~~ 58 (98)
+.|||+|||-++....+
T Consensus 79 ~~~~D~Ge~G~G~~a~~ 95 (424)
T d1d6za1 79 KAYLDSGDYGMGTLTSP 95 (424)
T ss_dssp CEECHHHHHCTTTTBCC
T ss_pred ceeEeccccCcCccccc
Confidence 47999999988876554
No 3
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=28.31 E-value=9.7 Score=23.79 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=13.6
Q ss_pred CCchHHHHHHHHHhCCC
Q 034306 12 SSQDHEAASTEKKYGGL 28 (98)
Q Consensus 12 ~s~~~eE~~l~~KYG~L 28 (98)
....++|+++.+|||++
T Consensus 53 ltLs~~Ee~IIeKyGKa 69 (82)
T d2efva1 53 ITLTEEEEVIIQRLGKS 69 (82)
T ss_dssp EECCHHHHHHHHHHGGG
T ss_pred eEecHHHHHHHHHHHHH
Confidence 34567899999999964
No 4
>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}
Probab=24.36 E-value=6 Score=26.87 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=31.7
Q ss_pred HHHHHHhCCCCCCCCccccccccccccchhhHHHHhhcCCC---CCCchhhhhhc
Q 034306 19 ASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGV---NQNSLVAIETL 70 (98)
Q Consensus 19 ~~l~~KYG~L~pKK~~Li~K~~eRkyFDSaD~aL~Kag~~~---~q~~~~~~e~l 70 (98)
....++|| +..--.-|+.=--.++..|+|+|.|.+++... ++....+|+.|
T Consensus 74 ~~~A~~~G-v~V~GSElVGLvP~~All~a~~~yl~~~~~~~~~e~~~v~~AI~~L 127 (146)
T d1qd1a2 74 CREAQELS-LPVVGSQLVGLVPLKALLDAAAFYCEKENLFLLQDEHRIRLVVNRL 127 (146)
T ss_dssp HHHHHHTT-CCEEEEEEESCBCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCccccEEEcceeHHHHHHHHHHhccccCcccCCHHHHHHHHHHhc
Confidence 34568898 33332335544445678999999999998642 22234566655
No 5
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=21.20 E-value=5 Score=23.32 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=8.2
Q ss_pred cccccchhhHH
Q 034306 41 GHAFFDSADWA 51 (98)
Q Consensus 41 eRkyFDSaD~a 51 (98)
-|.|||++|.+
T Consensus 114 ~~~y~d~~~~~ 124 (125)
T d1oh0a_ 114 MQAYWSEVNLS 124 (125)
T ss_dssp EEEECCGGGEE
T ss_pred EEEEECHHHCc
Confidence 36799998864
No 6
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=20.44 E-value=10 Score=29.00 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=13.6
Q ss_pred ccccchhhHHHHhhcCC
Q 034306 42 HAFFDSADWALYKQGAG 58 (98)
Q Consensus 42 RkyFDSaD~aL~Kag~~ 58 (98)
+.|||+|+|-++....+
T Consensus 90 k~~~D~g~yG~G~~a~~ 106 (441)
T d1w2za1 90 KTFFDSGEFGFGLSTVS 106 (441)
T ss_dssp CEECHHHHHCTTTTBCC
T ss_pred ceeEcccCccccccccc
Confidence 47999999988876643
No 7
>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]}
Probab=17.56 E-value=12 Score=28.57 Aligned_cols=17 Identities=12% Similarity=0.462 Sum_probs=14.1
Q ss_pred ccccchhhHHHHhhcCC
Q 034306 42 HAFFDSADWALYKQGAG 58 (98)
Q Consensus 42 RkyFDSaD~aL~Kag~~ 58 (98)
+.|||+|+|-++....+
T Consensus 83 ~~~~D~ge~G~G~~a~~ 99 (417)
T d1w6ga1 83 QNYFDTGEYLVGQYANS 99 (417)
T ss_dssp CEEECCCCCCGGGGBCC
T ss_pred ceeEeccccchhhhccc
Confidence 47999999988887654
No 8
>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=17.54 E-value=18 Score=21.24 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=9.4
Q ss_pred cccccchhhHHH
Q 034306 41 GHAFFDSADWAL 52 (98)
Q Consensus 41 eRkyFDSaD~aL 52 (98)
-|-|||+.|++.
T Consensus 119 ~~~y~D~~~~~~ 130 (135)
T d3dm8a1 119 LRMVLDTFDLVE 130 (135)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHH
Confidence 367999999854
No 9
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=16.39 E-value=36 Score=19.38 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=10.4
Q ss_pred hHHHHHHHHHhCCC
Q 034306 15 DHEAASTEKKYGGL 28 (98)
Q Consensus 15 ~~eE~~l~~KYG~L 28 (98)
.+...+|.+||||-
T Consensus 14 reraerllkkyggy 27 (55)
T d2csba4 14 RERAERLLKKYGGY 27 (55)
T ss_dssp HHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHhcCh
Confidence 34566788999984
No 10
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.44 E-value=24 Score=20.58 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=14.4
Q ss_pred ccccccchhhHHHHhhcCC
Q 034306 40 NGHAFFDSADWALYKQGAG 58 (98)
Q Consensus 40 ~eRkyFDSaD~aL~Kag~~ 58 (98)
.-||||.-||.+.-=.|.-
T Consensus 6 ~LrK~F~~GDhVkVi~G~~ 24 (62)
T d2do3a1 6 ELRKYFKMGDHVKVIAGRF 24 (62)
T ss_dssp CCCSSCCTTCEEEESSSTT
T ss_pred HheeccCCCCeEEEeccEE
Confidence 3589999999877666643
Done!