BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034307
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B
PE=2 SV=2
Length = 133
Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/95 (87%), Positives = 92/95 (96%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
MA+KA+TIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIF F
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
KFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIR
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIR 95
>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A
PE=2 SV=1
Length = 133
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/95 (92%), Positives = 94/95 (98%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
MA+KA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIFVF
Sbjct: 1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
KFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIR
Sbjct: 61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIR 95
>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps24b PE=2 SV=3
Length = 134
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 77/94 (81%), Gaps = 1/94 (1%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY D+ + F
Sbjct: 2 SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGL 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
RTHFGGG+STGF LIYDS ES KKFEP YRL+RV
Sbjct: 61 RTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRV 94
>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps24a PE=3 SV=3
Length = 134
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFR 63
+A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY DA+A+ F R
Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLR 61
Query: 64 THFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
TH+GGG++TGF LIYD VE+ KKFEP YRL+RV
Sbjct: 62 THYGGGRTTGFALIYDDVEAMKKFEPHYRLVRV 94
>sp|P14249|RS24_MUCCL 40S ribosomal protein S24 OS=Mucor circinelloides f. lusitanicus
GN=RPS24 PE=3 SV=1
Length = 148
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
Query: 2 ADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61
AD A+TIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY D + VF
Sbjct: 20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFG 78
Query: 62 FRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
F+THFGGGK+TGF LIYD+VE+ K FEPK+RL+R+
Sbjct: 79 FKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRI 113
>sp|Q75K27|RS24_DICDI 40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24
PE=3 SV=1
Length = 126
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 78/95 (82%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
M A+ +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK +A+++ V D IF+F
Sbjct: 1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R
Sbjct: 61 GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLAR 95
>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2
SV=1
Length = 132
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
M + TIRTRKFMTNRLL+RKQ V DVLHPG+ VSK E++EKLA+MY V + +FVF
Sbjct: 1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 59
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
F+T+FGGGKSTGF LIYD+++ AKKFEPK+RL R
Sbjct: 60 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 94
>sp|P0CX32|RS24B_YEAST 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS24B PE=1 SV=1
Length = 135
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 78/95 (82%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y + +A+ VF
Sbjct: 1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FRT FGGGKS GFGL+Y+SV AKKFEP YRL+R
Sbjct: 59 GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVR 93
>sp|P0CX31|RS24A_YEAST 40S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS24A PE=1 SV=1
Length = 135
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 78/95 (82%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y + +A+ VF
Sbjct: 1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FRT FGGGKS GFGL+Y+SV AKKFEP YRL+R
Sbjct: 59 GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVR 93
>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2
SV=1
Length = 131
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 74/91 (81%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
++T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY + +FVF F+T
Sbjct: 4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFKT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FGGGK+TGF ++YDS++ AKK EPKYRL R
Sbjct: 63 QFGGGKTTGFAMVYDSLDYAKKNEPKYRLAR 93
>sp|O42387|RS24_TAKRU 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1
Length = 132
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 73/91 (80%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY + +FVF FRT
Sbjct: 4 TVTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FGGGK+TGF ++YDS++ AKK EPK+RL R
Sbjct: 63 QFGGGKTTGFAMVYDSLDYAKKNEPKHRLAR 93
>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1
Length = 132
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+TIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY + +FVF FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRL 93
FGGGK+TGF ++YDS++ AKK EPK+RL
Sbjct: 63 QFGGGKTTGFAMVYDSLDYAKKNEPKHRL 91
>sp|Q5RAQ8|RS24_PONAB 40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1
Length = 131
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
HFGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|Q56JU9|RS24_BOVIN 40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2
Length = 131
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
HFGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P62850|RS24_RAT 40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1
Length = 133
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
HFGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P62849|RS24_MOUSE 40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1
Length = 133
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
HFGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P62848|RS24_MESAU 40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3
SV=1
Length = 133
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
HFGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P62847|RS24_HUMAN 40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1
Length = 133
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
HFGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P02377|RS24_XENLA 40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1
Length = 132
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
HFGGGK+TGFG+IYDS++ AKK EPK+RL +
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLAK 93
>sp|Q4R5H5|RS24_MACFA 40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2
SV=1
Length = 131
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 74/91 (81%), Gaps = 1/91 (1%)
Query: 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
+TIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY + IFVF FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRT 62
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
HFGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|Q8U442|RS24_PYRFU 30S ribosomal protein S24e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps24e PE=1 SV=1
Length = 99
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ IR ++ N+L+ RK+ ++ HPG S+ ++K KL M D+ + + R++
Sbjct: 1 MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY-IRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FG S G+ YDS E EP+Y LIR
Sbjct: 60 FGSYISKGYAKAYDSKERMLYIEPEYILIR 89
>sp|Q5JIY8|RS24_PYRKO 30S ribosomal protein S24e OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rps24e PE=3 SV=1
Length = 98
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ I+ + N+LL RK+ DVLH G S+ +K KL M D+ D N + R++
Sbjct: 1 MEIKVTEIRENKLLGRKEIYFDVLHEGEPTPSREAVKGKLVAMLDL-DPNTTVIQYIRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FG S G+ Y++ E EP+Y L+R
Sbjct: 60 FGSNVSKGYAKAYETRERMLYIEPEYILVR 89
>sp|C5A442|RS24_THEGJ 30S ribosomal protein S24e OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rps24e PE=3 SV=1
Length = 98
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ I+ + N+LL RK+ D++H G S+ +K KLA M D+ D N + + R++
Sbjct: 1 MEIKVTEIRENKLLGRKEIYFDIIHEGEPTPSREAVKGKLAAMLDL-DPNTMVLQYIRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FG S G+ Y++ E EP+Y L+R
Sbjct: 60 FGSHVSKGYAKAYETRERMLYIEPEYILLR 89
>sp|B6YW35|RS24_THEON 30S ribosomal protein S24e OS=Thermococcus onnurineus (strain
NA1) GN=rps24e PE=3 SV=1
Length = 98
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ I+ + N+LL RK+ DV+H G S+ ++K KL M D+ + + +++
Sbjct: 1 MEIKVTEIKENKLLGRKEIYFDVIHEGEPTPSRKDVKGKLVAMLDLDPETTVLQY-IKSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FG S G+ Y+S E EP+Y L+R
Sbjct: 60 FGSRVSKGYAKAYESKERMLYIEPEYILVR 89
>sp|P58746|RS24_PYRHO 30S ribosomal protein S24e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps24e PE=3 SV=1
Length = 99
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ I+ + N+L+ RK+ ++ HPG S+ ++K KL M D+ + + R++
Sbjct: 1 MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY-IRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FG KS G+ Y E EP+Y LIR
Sbjct: 60 FGSYKSKGYAKYYYDKERMLYIEPEYILIR 89
>sp|C6A0F5|RS24_THESM 30S ribosomal protein S24e OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=rps24e PE=3 SV=1
Length = 98
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ IR N+LL RK+ +V+H G S+A++K KL M D+ + A V R++
Sbjct: 1 MEIRVIDTKENKLLGRKEIYFEVIHEGEPTPSRADVKGKLVAMLDL-NPEATVVQYIRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FG S G+ Y+S E EP+Y L R
Sbjct: 60 FGSHVSEGYAKAYESKERMLYIEPEYVLRR 89
>sp|Q9UY20|RS24_PYRAB 30S ribosomal protein S24e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps24e PE=1 SV=1
Length = 99
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ I+ + N+L+ RK+ ++ HPG S+ ++K KL M D+ + + R++
Sbjct: 1 MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY-IRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
FG KS G+ Y + EP+Y LIR
Sbjct: 60 FGSYKSKGYAKYYYDKDRMLYIEPEYILIR 89
>sp|Q74M50|RS24_NANEQ 30S ribosomal protein S24e OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rps24e PE=3 SV=1
Length = 94
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N+L R +++I V HP ++ E KEK+A M +V D N + + K + +G S +
Sbjct: 12 NKLFDRTEYIIQVEHPKEKTPTREEAKEKIAEMLNV-DKNKLVIKKIVSKYGLPYSFIYA 70
Query: 76 LIYDSVESAKKFEPK 90
+YD++++AK+ E K
Sbjct: 71 RVYDNIDTAKRVELK 85
>sp|O26367|RS24_METTH 30S ribosomal protein S24e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rps24e PE=3 SV=1
Length = 100
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N LL+RK+ + L+ G + E+K KL M D D + + V K FG ++TG+
Sbjct: 11 NPLLNRKEIRFECLYEGESTPKVLEVKNKLVAMLDA-DKDLLVVDKIDQGFGEPRATGYA 69
Query: 76 LIYDSVESAKKFEPKY 91
IY+S E + EP++
Sbjct: 70 KIYESAEKLTEIEPEH 85
>sp|A4WKS9|RS24_PYRAR 30S ribosomal protein S24e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rps24e PE=3 SV=1
Length = 121
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N+LL+R++ +++V H ++ +L+E +A+ V D +++F+ K +T +G GKS
Sbjct: 14 NKLLARREVLVEVSHHKAPTPTRKDLREWVAKQLGV-DVSSVFIRKIKTEYGIGKSVAEV 72
Query: 76 LIYDSVESAKKFEPKYRLIR 95
+Y + A+ EP Y L R
Sbjct: 73 HVYSDSKMARIIEPLYILAR 92
>sp|Q8ZV65|RS24_PYRAE 30S ribosomal protein S24e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rps24e PE=3 SV=1
Length = 121
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N+LL+R++ +++ +H + ++ ++E +A+ + D + +FV + +T FG G+S
Sbjct: 14 NKLLARRELLVEAVHQNASTPTRQSVREWVAKQLGI-DISNVFVRRIKTEFGRGRSLAEV 72
Query: 76 LIYDSVESAKKFEPKYRLIR 95
+Y+ + A+ EP Y L R
Sbjct: 73 HVYNDSKIARVIEPLYILAR 92
>sp|Q8TVD8|RS24_METKA 30S ribosomal protein S24e OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rps24e PE=3
SV=1
Length = 116
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N LL RK+ V H K+E+ KLA + DV D + + + + FG ++ G+
Sbjct: 11 NPLLYRKEVKFVVRHEDSGTPQKSEVLRKLAAILDV-DKEVVLIDRMESEFGKRETKGYA 69
Query: 76 LIYDSVESAKKFEPKYRLIR 95
IY S+E + EP++ + R
Sbjct: 70 KIYKSMEHLEDIEPEHMVER 89
>sp|Q18KI1|RS24_HALWD 30S ribosomal protein S24e OS=Haloquadratum walsbyi (strain DSM
16790) GN=rps24e PE=3 SV=1
Length = 105
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L R ++ H A S+ +++ LA + +D++ + V K T FG K+ G+
Sbjct: 11 NSMLHRTDIQFEIAHED-ATPSRLSVRDSLAAKIN-KDSDEVVVHKLDTKFGMRKTIGYA 68
Query: 76 LIYDSVESAKKFEPKYRLIR 95
+YDS +SA++ E Y L R
Sbjct: 69 KVYDSPQSARQVEQDYMLKR 88
>sp|Q9YCY0|RS24_AERPE 30S ribosomal protein S24e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps24e
PE=3 SV=3
Length = 118
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N L+ R++ V+ + H + + L++KLA + V D I++ +T +G G S
Sbjct: 28 NPLVKRREIVMILHHELKPTPMRIMLRQKLAEVLGV-DIKRIYIRYIKTGYGAGLSKVRV 86
Query: 76 LIYDSVESAKKFEPKY 91
+YDS E A FEPKY
Sbjct: 87 HVYDSPERALSFEPKY 102
>sp|C4KIA8|RS24_SULIK 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rps24e PE=3 SV=1
Length = 120
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ ++ V H G S+ ++ + +++ + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREILLKVYHMGSGTPSRKDIIKAISQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S IY S E +K EPKY L R
Sbjct: 67 KISTSYGAGISNVKLHIYKSREILEKIEPKYLLDR 101
>sp|Q975Q9|RS24_SULTO 30S ribosomal protein S24e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rps24e PE=3 SV=1
Length = 120
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
+++KA I R + N ++ R++ I V H G +S+ ++ + +A Y ++ + + +
Sbjct: 11 ISEKAEGIVERD-IKNNVIGRRELYIKVFHIGSGTISRKDMIKAIASSYGAQE-DLVVIK 68
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S IY+ ++ ++FEP+Y + R
Sbjct: 69 KIHTLYGAGISYVRANIYNDKKTLQEFEPQYLIGR 103
>sp|Q97ZY6|RS24_SULSO 30S ribosomal protein S24e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps24e PE=3 SV=1
Length = 120
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R M N ++ R++ + V H G S+ ++ + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-MQNSVIGRREISLKVYHMGSGTPSRKDIIKAIIQALGSQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S IY S E +K EPKY L R
Sbjct: 67 KISTSYGAGISNVKLHIYKSREILEKVEPKYLLDR 101
>sp|P19953|RS24_HALMA 30S ribosomal protein S24e OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps24e
PE=1 SV=1
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L R +V+H A S+ +++ LA + +DA + + K T FG K+ G+
Sbjct: 11 NPMLHRTDVRFEVVH-DEATPSRLSVRDSLAATLN-KDAEEVVIHKLDTKFGMRKTVGYA 68
Query: 76 LIYDSVESAKKFEPKYRLIR 95
+YD+ E A+ E + L R
Sbjct: 69 KVYDNPEYARDVEQDHMLER 88
>sp|C3MWX0|RS24_SULIM 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rps24e PE=3 SV=1
Length = 120
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S IY S E +K EPKY L R
Sbjct: 67 KISTSYGAGISNVKLHIYKSREILEKIEPKYLLDR 101
>sp|C3N6N7|RS24_SULIA 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
M.16.27) GN=rps24e PE=3 SV=1
Length = 120
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S IY S E +K EPKY L R
Sbjct: 67 KISTSYGAGISNVKLHIYKSREILEKIEPKYLLDR 101
>sp|C3N750|RS24_SULIY 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rps24e PE=3 SV=1
Length = 120
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S IY S E +K EPKY L R
Sbjct: 67 KISTSYGAGISNIKLHIYKSREILEKIEPKYLLDR 101
>sp|C3NGI5|RS24_SULIN 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rps24e PE=3 SV=1
Length = 120
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S IY S E +K EPKY L R
Sbjct: 67 KISTSYGAGISNIKLHIYKSREILEKIEPKYLLDR 101
>sp|C3MQY2|RS24_SULIL 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rps24e PE=3 SV=1
Length = 120
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S IY S E +K EPKY L R
Sbjct: 67 KISTSYGAGISNIKLHIYKSREILEKIEPKYLLDR 101
>sp|Q6L0P8|RS24_PICTO 30S ribosomal protein S24e OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps24e
PE=3 SV=1
Length = 102
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N+LL RK+ + S+ ++++ LA Y D + I V K R G + G+
Sbjct: 14 NKLLFRKEINYTIKFENDKTPSREDIRKLLANNYGS-DESLIIVDKNRQETGKHEIKGYA 72
Query: 76 LIYDSVESAKKFEPKYRLIR 95
IYD+ E A +EP Y L R
Sbjct: 73 KIYDTKEHAMLYEPDYELFR 92
>sp|A4YIV8|RS24_METS5 30S ribosomal protein S24e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rps24e PE=3 SV=1
Length = 113
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA + N+++ RK+ I V H G S+A++++ ++ ++ + + +
Sbjct: 9 VSDKAEAL-VENLKENKVIGRKEIKIKVYHIGSPTPSRADIRKAISSFIGAKE-DLVVIR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S +Y + KFEP + + R
Sbjct: 67 KINTGYGAGISEATIHVYSEKDVLSKFEPAHLVNR 101
>sp|Q4JAF9|RS24_SULAC 30S ribosomal protein S24e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rps24e PE=3 SV=1
Length = 118
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DK I R N + +R++ I + H G S+ EL + +A + + + + V
Sbjct: 9 VSDKVEGIVERDIQNN-VANRRELYIKLFHIGSGTPSRKELVKAIASTFSTAE-DLVVVK 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T++G G S +Y +S +K EP+Y + R
Sbjct: 67 KVFTNYGSGISYARVNVYKDKDSLQKLEPQYLIGR 101
>sp|Q3IMN0|RS24_NATPD 30S ribosomal protein S24e OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rps24e PE=3 SV=1
Length = 105
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L R + H A S+ +++ LA + +DA+ + V K T +G K+ G
Sbjct: 11 NPMLHRTDVRFQLTHE-EATPSRLSVRDSLAAKLN-KDASEVVVRKLDTKYGMRKTVGHA 68
Query: 76 LIYDSVESAKKFEPKYRLIR 95
+YDS + AK E + L R
Sbjct: 69 KVYDSADDAKAVEQDHALER 88
>sp|B9LSM1|RS24_HALLT 30S ribosomal protein S24e OS=Halorubrum lacusprofundi (strain
ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps24e
PE=3 SV=1
Length = 102
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L R + H A S+ +++ LA D + + + V + T FG K+ G+
Sbjct: 11 NPMLHRTDIRFETTHE-EATPSRLSVRDSLAAKLD-KASEEVVVHELDTKFGMRKTIGYA 68
Query: 76 LIYDSVESAKKFEPKYRLIR 95
+YD+ E A E +Y L R
Sbjct: 69 KVYDTAEDALDVEQEYMLER 88
>sp|B8GFC3|RS24_METPE 30S ribosomal protein S24e OS=Methanosphaerula palustris (strain
ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps24e PE=3 SV=1
Length = 98
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N LL R++ + + G A S+ E++ KL + ++ + N + + RT +G + GF
Sbjct: 11 NELLGRRELRFILTYDG-ATPSRKEIRGKLCALNNI-NENLVVLDSLRTGYGRMQLDGFM 68
Query: 76 LIYDSVESAKKFEPKYRLIR 95
IYD+ E ++ E Y L R
Sbjct: 69 RIYDTEEGRQRTERSYLLNR 88
>sp|Q9HNL4|RS24_HALSA 30S ribosomal protein S24e OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=rps24e PE=3 SV=1
Length = 102
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N LL R ++H A S+ +++ LA D +D+ + V + T FG K+ G
Sbjct: 11 NPLLHRTDVQFKIVHDD-ATPSRLSVRDSLAAKLD-KDSEEVVVHELDTKFGMRKTRGRA 68
Query: 76 LIYDSVESAKKFEPKYRLIR 95
+YDS A + E + L R
Sbjct: 69 KVYDSPAQAAEVEHDHMLER 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,554,560
Number of Sequences: 539616
Number of extensions: 1116395
Number of successful extensions: 3587
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3512
Number of HSP's gapped (non-prelim): 61
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)