Query 034307
Match_columns 98
No_of_seqs 108 out of 314
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 20:46:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Y RP50, 40S ribosomal pro 100.0 4.1E-47 1.4E-51 267.8 9.3 95 1-97 1-95 (135)
2 2v94_A RPS24, 30S ribosomal pr 100.0 7.4E-46 2.5E-50 252.8 10.6 92 5-97 8-99 (107)
3 2g1d_A 30S ribosomal protein S 100.0 6.7E-46 2.3E-50 249.7 9.7 91 6-97 1-91 (98)
4 1xn9_A 30S ribosomal protein S 100.0 7.3E-45 2.5E-49 245.7 11.4 90 6-97 1-90 (101)
5 2xzm_P RPS24E; ribosome, trans 100.0 4.1E-45 1.4E-49 260.9 9.9 92 5-97 2-93 (149)
6 1ywx_A 30S ribosomal protein S 100.0 1.2E-44 4.1E-49 245.1 10.6 90 6-97 1-90 (102)
7 3iz6_U 40S ribosomal protein S 100.0 2.5E-46 8.6E-51 264.6 -2.0 94 4-97 8-101 (138)
8 2dgw_A Probable RNA-binding pr 81.4 4.6 0.00016 23.8 5.5 45 34-86 20-65 (91)
9 2cpf_A RNA binding motif prote 78.7 8.1 0.00028 22.9 6.3 50 34-86 15-65 (98)
10 2dhg_A TRNA selenocysteine ass 77.2 9.4 0.00032 22.9 7.0 47 34-86 19-66 (104)
11 3ue2_A Poly(U)-binding-splicin 75.4 7 0.00024 25.3 5.4 47 38-86 39-86 (118)
12 3p5t_L Cleavage and polyadenyl 73.3 10 0.00036 22.3 5.5 48 34-86 11-60 (90)
13 3dxb_A Thioredoxin N-terminall 71.9 5.9 0.0002 27.3 4.6 31 56-86 159-190 (222)
14 3nmr_A Cugbp ELAV-like family 67.5 12 0.00042 23.8 5.2 50 33-86 12-62 (175)
15 2cqg_A TDP-43, TAR DNA-binding 66.6 11 0.00036 22.7 4.5 47 34-86 25-72 (103)
16 1p1t_A Cleavage stimulation fa 66.5 17 0.00059 21.6 5.5 47 34-86 18-65 (104)
17 1jmt_A Splicing factor U2AF 35 66.1 8.5 0.00029 24.0 4.1 18 69-86 65-83 (104)
18 2d9p_A Polyadenylate-binding p 64.1 7.9 0.00027 23.3 3.5 45 34-86 25-70 (103)
19 2cpz_A CUG triplet repeat RNA- 64.0 18 0.00063 22.1 5.3 47 34-86 35-82 (115)
20 2io0_B Small ubiquitin-related 64.0 23 0.0008 22.0 6.5 50 1-60 1-50 (91)
21 2mss_A Protein (musashi1); RNA 63.7 14 0.00046 20.7 4.4 48 34-87 9-57 (75)
22 2dha_A FLJ20171 protein; RRM d 63.0 16 0.00056 23.6 5.1 49 33-86 32-83 (123)
23 2dnh_A Bruno-like 5, RNA bindi 62.2 14 0.00048 22.1 4.4 46 34-86 25-71 (105)
24 4fxv_A ELAV-like protein 1; RN 61.8 21 0.0007 21.7 5.2 67 11-86 9-76 (99)
25 2pe8_A Splicing factor 45; RRM 61.6 10 0.00034 23.8 3.7 45 37-86 26-71 (105)
26 2cqc_A Arginine/serine-rich sp 61.3 15 0.00052 21.4 4.4 47 34-86 25-72 (95)
27 2dgv_A HnRNP M, heterogeneous 60.7 22 0.00074 20.6 5.0 45 34-86 18-63 (92)
28 2cqp_A RNA-binding protein 12; 59.5 24 0.00083 20.7 5.6 48 33-86 24-72 (98)
29 3s8s_A Histone-lysine N-methyl 58.7 30 0.001 21.5 6.0 47 34-86 16-63 (110)
30 1uaw_A Mouse-musashi-1; RNP-ty 55.7 8.5 0.00029 21.6 2.4 46 34-85 10-56 (77)
31 4a8x_A RNA-binding protein wit 55.0 27 0.00093 19.9 4.9 48 34-86 14-62 (88)
32 2ek1_A RNA-binding protein 12; 54.2 30 0.001 20.1 5.4 47 34-86 25-72 (95)
33 3ulh_A THO complex subunit 4; 53.6 33 0.0011 20.4 5.1 46 34-86 39-85 (107)
34 2cpx_A Hypothetical protein FL 51.9 11 0.00039 22.9 2.7 47 34-86 35-82 (115)
35 3pgw_A U1-A; protein-RNA compl 51.8 34 0.0012 23.9 5.6 48 34-86 19-67 (282)
36 3bs9_A Nucleolysin TIA-1 isofo 51.8 31 0.0011 19.6 7.0 47 34-86 16-63 (87)
37 2lxi_A RNA-binding protein 10; 51.4 16 0.00056 21.7 3.4 48 33-86 10-59 (91)
38 2fy1_A RNA-binding motif prote 51.2 17 0.0006 22.6 3.6 46 34-86 17-63 (116)
39 2dh8_A DAZ-associated protein 51.0 37 0.0013 20.2 6.1 47 34-86 26-73 (105)
40 4f25_A Polyadenylate-binding p 50.0 42 0.0014 20.6 5.6 45 34-86 15-60 (115)
41 3n9u_C Cleavage and polyadenyl 49.2 54 0.0019 21.6 7.3 50 33-86 64-114 (156)
42 2la6_A RNA-binding protein FUS 49.2 38 0.0013 19.9 4.9 47 34-86 23-78 (99)
43 2hvz_A Splicing factor, argini 49.1 25 0.00084 20.9 3.9 42 34-86 10-52 (101)
44 1p27_B RNA-binding protein 8A; 48.7 40 0.0014 20.0 6.8 47 34-86 33-80 (106)
45 3s7r_A Heterogeneous nuclear r 47.9 37 0.0013 19.4 5.6 47 34-86 21-68 (87)
46 1x4e_A RNA binding motif, sing 47.6 29 0.001 19.8 4.0 47 34-86 15-62 (85)
47 2zws_A Neutral ceramidase; pri 47.6 15 0.00052 30.6 3.6 47 22-69 55-103 (646)
48 2do4_A Squamous cell carcinoma 47.6 41 0.0014 19.8 6.0 46 34-86 27-73 (100)
49 1x5s_A Cold-inducible RNA-bind 46.8 19 0.00066 21.3 3.2 47 34-86 22-69 (102)
50 1fjc_A Nucleolin RBD2, protein 46.6 22 0.00074 20.9 3.3 42 34-86 26-68 (96)
51 2a3j_A U1 small nuclear ribonu 46.0 11 0.00038 24.5 2.1 44 34-85 39-86 (127)
52 1fj7_A Nucleolin RBD1, protein 45.3 4.2 0.00014 24.5 -0.1 47 33-86 26-73 (101)
53 1wel_A RNA-binding protein 12; 45.2 25 0.00085 21.9 3.6 47 33-85 34-81 (124)
54 1u6f_A Tcubp1, RNA-binding pro 45.1 54 0.0019 20.5 7.3 47 34-86 52-99 (139)
55 2dgo_A Cytotoxic granule-assoc 44.7 50 0.0017 19.9 7.0 47 34-86 25-72 (115)
56 1nu4_A U1A RNA binding domain; 44.2 8 0.00028 22.8 1.1 48 34-86 18-66 (97)
57 2ki2_A SS-DNA binding protein 44.1 13 0.00043 21.7 2.0 48 34-87 11-59 (90)
58 3tve_T 50S ribosomal protein L 43.9 53 0.0018 20.7 5.0 46 11-63 11-56 (92)
59 2div_A TRNA selenocysteine ass 43.7 48 0.0016 19.4 5.6 47 34-86 19-67 (99)
60 2ywk_A Putative RNA-binding pr 43.4 42 0.0014 19.4 4.3 46 34-86 26-72 (95)
61 1iqt_A AUF1, heterogeneous nuc 42.6 9 0.00031 21.5 1.1 47 34-86 9-56 (75)
62 2dgp_A Bruno-like 4, RNA bindi 42.4 20 0.00068 21.4 2.7 47 33-85 22-69 (106)
63 1wxv_A BAG-family molecular ch 42.3 53 0.0018 19.5 5.1 25 35-59 31-55 (92)
64 2krb_A Eukaryotic translation 42.3 12 0.0004 21.6 1.6 19 68-86 43-62 (81)
65 2dnz_A Probable RNA-binding pr 42.1 44 0.0015 19.3 4.3 47 34-86 15-62 (95)
66 2xs2_A Deleted in azoospermia- 41.8 27 0.00092 20.7 3.3 45 34-85 19-64 (102)
67 2x1f_A MRNA 3'-END-processing 41.7 28 0.00095 20.5 3.3 47 34-86 12-59 (96)
68 2cq0_A Eukaryotic translation 41.7 53 0.0018 19.4 5.9 47 34-86 25-72 (103)
69 2cqd_A RNA-binding region cont 41.5 14 0.00046 22.7 1.9 47 34-86 27-74 (116)
70 2daf_A FLJ35834 protein; hypot 41.5 76 0.0026 21.1 6.2 25 33-58 34-58 (118)
71 2dnl_A Cytoplasmic polyadenyla 41.2 16 0.00055 22.6 2.2 49 34-86 18-67 (114)
72 1h2v_Z 20 kDa nuclear CAP bind 41.2 69 0.0023 20.5 6.2 47 34-86 49-96 (156)
73 2hgl_A HNRPF protein, heteroge 40.8 51 0.0018 21.5 4.8 48 33-86 53-103 (136)
74 3ns6_A Eukaryotic translation 40.3 56 0.0019 19.5 4.6 20 67-86 49-69 (100)
75 2dgs_A DAZ-associated protein 40.2 37 0.0013 19.9 3.7 47 34-86 20-67 (99)
76 2d9o_A DNAJ (HSP40) homolog, s 40.2 22 0.00075 22.2 2.7 41 34-85 27-68 (100)
77 1x5o_A RNA binding motif, sing 40.2 60 0.002 19.5 6.0 46 34-86 35-81 (114)
78 2cqh_A IGF-II mRNA-binding pro 39.5 55 0.0019 18.9 4.5 41 34-86 18-59 (93)
79 1wg1_A KIAA1579 protein, homol 39.3 18 0.00061 21.1 2.1 40 34-86 15-55 (88)
80 1x4b_A Heterogeneous nuclear r 39.2 20 0.0007 21.9 2.4 47 34-86 37-84 (116)
81 3sde_A Paraspeckle component 1 39.0 44 0.0015 23.4 4.5 46 34-86 106-152 (261)
82 2dnn_A RNA-binding protein 12; 39.0 21 0.00071 22.5 2.5 52 25-85 18-70 (109)
83 2kt5_A RNA and export factor-b 38.8 38 0.0013 20.9 3.7 47 33-86 44-91 (124)
84 2cqb_A Peptidyl-prolyl CIS-tra 38.6 22 0.00075 21.1 2.5 47 34-86 22-69 (102)
85 2cqi_A Nucleolysin TIAR; RNA r 38.1 37 0.0013 20.1 3.5 45 34-86 25-70 (103)
86 2qlc_A DNA repair protein RADC 37.4 30 0.001 22.9 3.2 28 24-51 71-104 (126)
87 2kjr_A CG11242; UBL, ubiquitin 37.4 72 0.0025 19.7 8.0 49 4-60 14-62 (95)
88 3md3_A Nuclear and cytoplasmic 37.2 73 0.0025 19.7 6.0 47 34-86 97-144 (166)
89 1fxl_A Paraneoplastic encephal 37.2 74 0.0025 19.7 5.4 47 34-86 12-59 (167)
90 3w1s_C Ubiquitin-like protein 36.7 69 0.0024 20.1 4.7 25 3-27 6-30 (91)
91 2fc8_A NCL protein; structure 36.7 41 0.0014 19.8 3.5 44 34-86 25-69 (102)
92 3md1_A Nuclear and cytoplasmic 36.7 56 0.0019 18.2 5.8 47 34-86 11-58 (83)
93 3q2s_C Cleavage and polyadenyl 36.7 1.1E+02 0.0037 21.4 6.3 49 33-85 77-126 (229)
94 2jrs_A RNA-binding protein 39; 36.4 72 0.0025 19.4 6.4 47 34-86 36-83 (108)
95 1iv3_A 2-C-methyl-D-erythritol 36.3 30 0.001 24.2 3.1 28 33-61 104-131 (152)
96 1t0a_A 2C-methyl-D-erythritol 36.1 33 0.0011 24.1 3.3 29 33-62 106-134 (159)
97 1l3k_A Heterogeneous nuclear r 35.9 86 0.003 20.1 6.1 47 34-86 114-161 (196)
98 2db1_A Heterogeneous nuclear r 35.6 29 0.00098 21.6 2.8 54 26-86 20-76 (118)
99 1gx1_A 2-C-methyl-D-erythritol 35.6 34 0.0012 24.1 3.3 29 33-62 105-133 (160)
100 1s79_A Lupus LA protein; RRM, 35.2 39 0.0013 20.7 3.3 46 34-86 21-67 (103)
101 2okr_C MAP kinase-activated pr 35.1 0.95 3.3E-05 23.1 -3.5 15 8-22 3-17 (26)
102 3ftb_A Histidinol-phosphate am 35.1 34 0.0011 24.2 3.3 26 34-60 59-84 (361)
103 2hj8_A Interferon-induced 17 k 34.7 71 0.0024 18.8 7.2 32 22-58 15-46 (88)
104 2raq_A Conserved protein MTH88 34.7 86 0.0029 20.3 4.9 39 22-63 7-45 (97)
105 3fkd_A L-threonine-O-3-phospha 34.5 26 0.00087 25.0 2.6 25 35-60 49-73 (350)
106 2rs2_A Musashi-1, RNA-binding 34.1 35 0.0012 20.9 2.9 47 34-86 35-82 (109)
107 3p1t_A Putative histidinol-pho 34.1 22 0.00075 24.9 2.2 26 34-60 49-74 (337)
108 3abf_A 4-oxalocrotonate tautom 33.6 37 0.0013 18.5 2.8 33 26-59 4-41 (64)
109 2pmp_A 2-C-methyl-D-erythritol 33.5 35 0.0012 24.0 3.1 28 33-61 107-134 (160)
110 1oo0_B CG8781-PA, drosophila Y 32.9 38 0.0013 20.3 2.9 47 34-86 36-83 (110)
111 3re3_A 2-C-methyl-D-erythritol 32.9 35 0.0012 24.0 3.1 29 33-62 110-138 (162)
112 2kxn_B Transformer-2 protein h 32.9 75 0.0026 20.1 4.5 47 34-86 56-103 (129)
113 2f3j_A RNA and export factor b 32.2 1.1E+02 0.0037 20.5 5.5 47 33-86 97-144 (177)
114 1wez_A HnRNP H', FTP-3, hetero 32.1 25 0.00085 21.5 2.0 44 34-85 25-69 (102)
115 1kvd_B SMK toxin; halotolerant 31.8 39 0.0013 20.6 2.7 18 31-48 15-32 (77)
116 1x5t_A Splicing factor 3B subu 31.5 35 0.0012 19.8 2.5 47 34-86 15-63 (96)
117 2e5h_A Zinc finger CCHC-type a 31.3 48 0.0016 19.1 3.1 47 34-86 26-73 (94)
118 2khc_A Testis-specific RNP-typ 31.2 54 0.0018 19.9 3.5 46 34-85 50-96 (118)
119 3d2w_A TAR DNA-binding protein 30.7 48 0.0016 19.5 3.1 46 33-89 20-66 (89)
120 1q1v_A DEK protein; winged-hel 30.5 35 0.0012 20.5 2.4 18 34-51 31-49 (70)
121 3r8s_T 50S ribosomal protein L 30.4 56 0.0019 20.7 3.5 41 11-56 16-57 (93)
122 1fg7_A Histidinol phosphate am 30.0 30 0.001 25.0 2.4 25 35-60 57-81 (356)
123 3hdo_A Histidinol-phosphate am 30.0 31 0.0011 24.7 2.4 26 34-60 63-88 (360)
124 3f0d_A 2-C-methyl-D-erythritol 29.8 43 0.0015 24.1 3.1 30 33-63 127-156 (183)
125 1x1m_A Ubiquitin-like protein 29.8 1E+02 0.0034 19.0 4.8 20 36-56 45-66 (107)
126 2e5j_A Methenyltetrahydrofolat 29.7 53 0.0018 19.3 3.2 42 34-86 29-71 (97)
127 2cpi_A CCR4-NOT transcription 29.5 33 0.0011 20.9 2.2 50 34-86 25-78 (111)
128 2xnq_A Nuclear polyadenylated 28.6 63 0.0022 19.2 3.4 38 35-86 34-72 (97)
129 2dng_A Eukaryotic translation 28.4 94 0.0032 18.2 6.2 47 33-86 24-71 (103)
130 2kn4_A Immunoglobulin G-bindin 28.4 82 0.0028 20.0 4.2 48 33-86 79-127 (158)
131 1x4c_A Splicing factor, argini 28.2 1E+02 0.0034 18.5 4.4 26 23-50 15-40 (108)
132 1x4a_A Splicing factor, argini 28.0 53 0.0018 19.6 3.0 44 34-86 32-76 (109)
133 1wi8_A EIF-4B, eukaryotic tran 28.0 69 0.0024 18.9 3.5 47 33-86 24-72 (104)
134 1b7f_A Protein (SXL-lethal pro 28.0 1.1E+02 0.0038 19.0 6.1 47 34-86 99-146 (168)
135 3bs3_A Putative DNA-binding pr 27.8 22 0.00075 19.7 1.1 25 32-58 46-70 (76)
136 1wf0_A TDP-43, TAR DNA-binding 27.4 19 0.00066 20.9 0.8 43 34-87 15-58 (88)
137 2cph_A RNA binding motif prote 27.4 35 0.0012 20.2 2.1 47 34-86 25-73 (107)
138 2cq4_A RNA binding motif prote 27.3 51 0.0017 19.9 2.8 47 34-86 35-82 (114)
139 1owx_A Lupus LA protein, SS-B, 27.2 57 0.002 21.4 3.2 46 33-88 27-74 (121)
140 1whw_A Hypothetical protein ri 27.0 60 0.0021 18.9 3.1 47 34-86 18-65 (99)
141 2err_A Ataxin-2-binding protei 26.9 46 0.0016 20.2 2.6 45 34-86 39-84 (109)
142 2cpy_A RNA-binding protein 12; 26.7 31 0.001 21.2 1.7 48 33-86 24-72 (114)
143 4hcn_B Polyubiquitin, ubiquiti 26.6 80 0.0028 19.0 3.7 22 34-56 41-62 (98)
144 1rk8_A CG8781-PA, CG8781-PA pr 26.6 1.1E+02 0.0037 19.8 4.6 47 34-86 82-129 (165)
145 2la4_A Nuclear and cytoplasmic 26.6 52 0.0018 19.3 2.7 41 34-86 37-78 (101)
146 1y7y_A C.AHDI; helix-turn-heli 26.4 23 0.00079 19.5 1.0 23 32-56 49-71 (74)
147 2j76_E EIF-4B, EIF4B, eukaryot 26.1 20 0.00068 21.5 0.7 20 67-86 56-76 (100)
148 1wg5_A Heterogeneous nuclear r 26.0 1E+02 0.0036 18.3 4.1 47 34-86 25-72 (104)
149 3djh_A Macrophage migration in 25.9 73 0.0025 19.8 3.5 36 25-61 58-98 (114)
150 2kvi_A Nuclear polyadenylated 25.9 1E+02 0.0036 17.9 4.3 38 35-86 22-60 (96)
151 3egn_A RNA-binding protein 40; 25.8 1.2E+02 0.004 19.0 4.5 46 34-85 55-106 (143)
152 1x5u_A Splicing factor 3B subu 25.3 52 0.0018 19.4 2.5 47 34-86 25-72 (105)
153 2g4b_A Splicing factor U2AF 65 25.2 1.3E+02 0.0044 18.8 6.0 46 34-85 104-150 (172)
154 2lqo_A Putative glutaredoxin R 25.1 45 0.0015 20.4 2.3 18 34-51 68-85 (92)
155 3get_A Histidinol-phosphate am 25.0 43 0.0015 23.8 2.4 22 38-60 67-88 (365)
156 1zod_A DGD, 2,2-dialkylglycine 25.0 59 0.002 23.9 3.3 30 31-61 80-109 (433)
157 3mdf_A Peptidyl-prolyl CIS-tra 24.9 97 0.0033 17.2 5.6 47 34-86 17-64 (85)
158 1x4h_A RNA-binding protein 28; 24.9 75 0.0026 18.8 3.3 47 34-86 25-72 (111)
159 3m1y_A Phosphoserine phosphata 24.8 64 0.0022 20.7 3.1 60 36-96 141-200 (217)
160 1v6e_A Cytoskeleton-associated 24.8 1.2E+02 0.0041 18.2 5.2 22 34-56 27-48 (95)
161 2x4k_A 4-oxalocrotonate tautom 24.5 45 0.0016 17.8 2.0 32 27-59 7-43 (63)
162 1wf1_A RNA-binding protein RAL 24.5 98 0.0034 18.5 3.8 36 36-85 40-76 (110)
163 2dnm_A SRP46 splicing factor; 24.4 44 0.0015 19.7 2.1 46 34-85 23-69 (103)
164 2cpe_A RNA-binding protein EWS 24.2 28 0.00095 21.1 1.1 48 34-86 25-80 (113)
165 2ku7_A MLL1 PHD3-CYP33 RRM chi 24.2 63 0.0022 19.9 2.9 47 34-86 73-120 (140)
166 2jvo_A Nucleolar protein 3; nu 24.1 84 0.0029 19.1 3.4 39 34-86 41-80 (108)
167 2i0x_A Hypothetical protein PF 24.1 26 0.00088 21.6 1.0 46 19-70 25-72 (85)
168 2cq3_A RNA-binding protein 9; 24.1 45 0.0015 19.7 2.1 46 33-86 24-70 (103)
169 3b6n_A 2-C-methyl-D-erythritol 24.1 38 0.0013 24.5 1.9 29 33-62 132-160 (187)
170 2lea_A Serine/arginine-rich sp 24.0 21 0.00072 23.0 0.5 47 34-86 57-104 (135)
171 2jwn_A Embryonic polyadenylate 23.9 1.3E+02 0.0043 18.2 4.7 47 34-86 46-93 (124)
172 3n3k_B Ubiquitin; hydrolase, p 23.6 74 0.0025 18.1 3.0 22 34-56 22-43 (85)
173 1svv_A Threonine aldolase; str 23.6 60 0.0021 22.6 3.0 27 33-60 46-72 (359)
174 1wyw_B Ubiquitin-like protein 23.5 1.3E+02 0.0044 18.1 4.6 37 20-60 30-66 (97)
175 3mtn_B UBA80, ubcep1, ubiquiti 23.5 1.1E+02 0.0037 17.3 4.0 31 22-57 14-44 (85)
176 2kj6_A Tubulin folding cofacto 23.3 1.4E+02 0.0048 18.5 6.6 43 5-56 14-56 (97)
177 1zpw_X Hypothetical protein TT 23.0 31 0.0011 21.3 1.2 32 32-64 39-71 (90)
178 2fc9_A NCL protein; structure 22.9 30 0.001 20.4 1.1 43 34-86 25-68 (101)
179 3ffh_A Histidinol-phosphate am 22.8 40 0.0014 23.9 1.9 26 34-60 65-90 (363)
180 2bz2_A Negative elongation fac 22.8 56 0.0019 20.5 2.4 40 35-86 48-88 (121)
181 3mlf_A Transcriptional regulat 22.8 63 0.0021 20.0 2.7 26 32-59 59-84 (111)
182 1k61_A Mating-type protein alp 22.8 25 0.00085 19.6 0.6 24 30-55 20-43 (60)
183 4a17_R RPL23A, 60S ribosomal p 22.7 1.9E+02 0.0066 19.9 5.6 56 22-86 88-146 (150)
184 2do0_A HnRNP M, heterogeneous 22.7 1.3E+02 0.0044 17.8 5.9 46 34-86 25-71 (114)
185 3ez1_A Aminotransferase MOCR f 22.5 52 0.0018 24.0 2.5 25 35-60 69-93 (423)
186 3bpd_A Uncharacterized protein 22.4 85 0.0029 20.5 3.2 41 21-64 6-46 (100)
187 2xi8_A Putative transcription 22.2 29 0.00098 18.5 0.8 25 32-58 37-61 (66)
188 1a6s_A GAG polyprotein; core p 22.1 26 0.00088 22.3 0.6 20 30-49 15-34 (87)
189 3ly1_A Putative histidinol-pho 22.1 34 0.0011 24.2 1.3 26 34-60 49-74 (354)
190 1sfl_A 3-dehydroquinate dehydr 22.0 75 0.0026 22.7 3.3 33 23-57 127-159 (238)
191 2uyz_B Small ubiquitin-related 21.8 1.2E+02 0.0041 17.1 5.9 30 22-56 14-43 (79)
192 3euc_A Histidinol-phosphate am 21.8 1E+02 0.0034 21.9 3.9 27 34-60 65-91 (367)
193 2kzf_A RBFA, ribosome-binding 21.7 1.6E+02 0.0054 18.5 4.9 44 39-82 13-61 (106)
194 3ex7_B RNA-binding protein 8A; 21.7 66 0.0023 19.7 2.6 47 34-86 32-79 (126)
195 2ytc_A PRE-mRNA-splicing facto 21.7 86 0.0029 17.6 2.9 41 34-86 22-63 (85)
196 3fz4_A Putative arsenate reduc 21.6 28 0.00097 22.3 0.8 31 18-48 22-52 (120)
197 3fwt_A Macrophage migration in 21.6 81 0.0028 20.5 3.1 35 25-60 80-119 (133)
198 3t5s_A Gilaa.00834.A, macropha 21.4 1.1E+02 0.0037 20.0 3.7 36 24-60 79-119 (135)
199 3phx_B Ubiquitin-like protein 21.3 1.2E+02 0.0041 17.0 5.7 31 22-57 15-45 (79)
200 2qfj_A FBP-interacting repress 21.2 1.8E+02 0.006 18.9 6.1 47 34-86 135-182 (216)
201 1wjn_A Tubulin-folding protein 21.2 1.4E+02 0.0049 17.8 4.3 26 34-60 31-56 (97)
202 1x4g_A Nucleolysin TIAR; struc 21.0 88 0.003 18.6 3.0 41 34-86 35-76 (109)
203 3u5e_X 60S ribosomal protein L 21.0 2.1E+02 0.007 19.6 5.6 62 16-86 73-138 (142)
204 2lmi_A GRSF-1, G-rich sequence 20.9 26 0.00089 21.3 0.5 47 34-86 21-70 (107)
205 1t0y_A Tubulin folding cofacto 20.9 1.7E+02 0.0057 18.5 6.6 45 1-56 3-47 (122)
206 2ghp_A U4/U6 snRNA-associated 20.8 1.5E+02 0.0053 20.5 4.7 47 34-86 127-174 (292)
207 2dzi_A Ubiquitin-like protein 20.8 1.2E+02 0.0042 16.9 7.0 47 4-60 6-52 (81)
208 3lqv_A PRE-mRNA branch site pr 20.6 42 0.0014 20.3 1.4 44 33-85 17-61 (115)
209 4hvk_A Probable cysteine desul 20.6 78 0.0027 22.1 3.0 23 37-60 44-66 (382)
210 1v86_A DNA segment, CHR 7, way 20.5 1.5E+02 0.0051 17.8 4.1 24 34-58 35-58 (95)
211 1du6_A PBX1, homeobox protein 20.5 28 0.00097 19.6 0.6 24 30-55 25-48 (64)
212 4h3d_A 3-dehydroquinate dehydr 20.4 92 0.0032 22.6 3.5 32 24-57 142-173 (258)
213 3iz5_X 60S ribosomal protein L 20.4 2.2E+02 0.0075 19.7 5.2 62 16-86 83-148 (152)
214 3kz3_A Repressor protein CI; f 20.4 63 0.0022 18.3 2.1 22 32-55 48-69 (80)
215 2nlw_A Eukaryotic translation 20.3 24 0.00083 21.4 0.2 41 37-85 34-75 (105)
216 2cjk_A Nuclear polyadenylated 20.3 73 0.0025 19.9 2.6 46 34-85 13-59 (167)
217 1sjq_A Polypyrimidine tract-bi 20.2 93 0.0032 19.6 3.1 39 35-85 27-66 (105)
No 1
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=100.00 E-value=4.1e-47 Score=267.81 Aligned_cols=95 Identities=67% Similarity=1.086 Sum_probs=92.3
Q ss_pred CCCccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCC
Q 034307 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDS 80 (98)
Q Consensus 1 m~~~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds 80 (98)
|+| +|||+|++|++||||+|+||+|+|+|||.|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||
T Consensus 1 m~~-~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~-~~d~VvV~g~rT~fG~gkstGfa~IYds 78 (135)
T 3u5c_Y 1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNS 78 (135)
T ss_dssp -CC-CCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTS-CGGGEEEEEEEECTTSSEEEEEEEEESS
T ss_pred CCC-cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEeccCCceEEEEEEEeCC
Confidence 777 89999999999999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred HHHHHhcCcceeeeccC
Q 034307 81 VESAKKFEPKYRLIRVI 97 (98)
Q Consensus 81 ~e~~kk~Epk~~l~Rn~ 97 (98)
+|+|+++||+|+|+||+
T Consensus 79 ~d~akk~EPkyrL~R~g 95 (135)
T 3u5c_Y 79 VAEAKKFEPTYRLVRYG 95 (135)
T ss_dssp HHHHHHHSCHHHHHHHT
T ss_pred HHHHHhcCchheEeecc
Confidence 99999999999999986
No 2
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=100.00 E-value=7.4e-46 Score=252.82 Aligned_cols=92 Identities=29% Similarity=0.522 Sum_probs=90.1
Q ss_pred cEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q 034307 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESA 84 (98)
Q Consensus 5 ~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~ 84 (98)
.++|+|+++++||||+|||++|+|+|||+|||||+||+++||++|++ ++++|||++|+|+||+|+|+|||+||||.|+|
T Consensus 8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~a 86 (107)
T 2v94_A 8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRM 86 (107)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHH
T ss_pred eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHH
Confidence 48999999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred HhcCcceeeeccC
Q 034307 85 KKFEPKYRLIRVI 97 (98)
Q Consensus 85 kk~Epk~~l~Rn~ 97 (98)
++|||+|+|+||+
T Consensus 87 kk~Epky~L~R~g 99 (107)
T 2v94_A 87 LYIEPEYILIRDG 99 (107)
T ss_dssp HHHSCHHHHHHTT
T ss_pred HhhCchheeeecC
Confidence 9999999999996
No 3
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=100.00 E-value=6.7e-46 Score=249.68 Aligned_cols=91 Identities=26% Similarity=0.346 Sum_probs=88.9
Q ss_pred EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK 85 (98)
Q Consensus 6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k 85 (98)
++|+|+++++||||+||||+|+|+|||+|||||+||+++||++|++ ++++|||++|+|+||+|+|+|||+||||.|+|+
T Consensus 1 Mei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~-~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~k 79 (98)
T 2g1d_A 1 MDLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAM 79 (98)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHH
T ss_pred CcEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHH
Confidence 3799999999999999999999999999999999999999999995 999999999999999999999999999999999
Q ss_pred hcCcceeeeccC
Q 034307 86 KFEPKYRLIRVI 97 (98)
Q Consensus 86 k~Epk~~l~Rn~ 97 (98)
++||+|+|+||+
T Consensus 80 k~Epky~l~R~~ 91 (98)
T 2g1d_A 80 LYEPDYELIRNG 91 (98)
T ss_dssp HHCTTSCSCSSC
T ss_pred hhCcceeeeecC
Confidence 999999999996
No 4
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=100.00 E-value=7.3e-45 Score=245.74 Aligned_cols=90 Identities=24% Similarity=0.416 Sum_probs=87.9
Q ss_pred EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK 85 (98)
Q Consensus 6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k 85 (98)
+.|+|.++++||||+||||+|+|+| |+|||||+||+++||+||++ ++++|||++|+|+||+|+|+|||+||||.|+|+
T Consensus 1 Mei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~ak 78 (101)
T 1xn9_A 1 MDIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMK 78 (101)
T ss_dssp CEEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHH
T ss_pred CcEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHH
Confidence 3799999999999999999999999 99999999999999999995 999999999999999999999999999999999
Q ss_pred hcCcceeeeccC
Q 034307 86 KFEPKYRLIRVI 97 (98)
Q Consensus 86 k~Epk~~l~Rn~ 97 (98)
++||+|+|+||+
T Consensus 79 k~Epky~L~R~g 90 (101)
T 1xn9_A 79 QVEQEYVLKRNA 90 (101)
T ss_dssp HHHTGGGCCCCS
T ss_pred hhCchheeeecC
Confidence 999999999996
No 5
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=100.00 E-value=4.1e-45 Score=260.92 Aligned_cols=92 Identities=49% Similarity=0.858 Sum_probs=90.6
Q ss_pred cEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q 034307 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESA 84 (98)
Q Consensus 5 ~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~ 84 (98)
+|||+|+++++||||+|+||+|+|+|||+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus 2 ~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~-~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a 80 (149)
T 2xzm_P 2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFSTQYGGGKSTGFALVYDNQQYL 80 (149)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTC-CGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred cEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence 79999999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred HhcCcceeeeccC
Q 034307 85 KKFEPKYRLIRVI 97 (98)
Q Consensus 85 kk~Epk~~l~Rn~ 97 (98)
++|||+|+|+||+
T Consensus 81 Kk~EPkyrL~Rng 93 (149)
T 2xzm_P 81 LKYEPNYRLRKVK 93 (149)
T ss_dssp HHHSCHHHHHHTT
T ss_pred HhhCchheeeecc
Confidence 9999999999996
No 6
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=100.00 E-value=1.2e-44 Score=245.10 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=87.6
Q ss_pred EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK 85 (98)
Q Consensus 6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k 85 (98)
+.|+|.++++||||+||||+|+|+| ++|||||+||+++||+||++ ++++|||++|+|+||+|+|+|||+||||.|+|+
T Consensus 1 Mei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~ak 78 (102)
T 1ywx_A 1 MDISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMA 78 (102)
T ss_dssp CEEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHH
T ss_pred CcEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEccEecCCCceEEEEEEEECCHHHHH
Confidence 3689999999999999999999999 78999999999999999995 999999999999999999999999999999999
Q ss_pred hcCcceeeeccC
Q 034307 86 KFEPKYRLIRVI 97 (98)
Q Consensus 86 k~Epk~~l~Rn~ 97 (98)
+|||+|+|+||+
T Consensus 79 k~Epky~L~R~g 90 (102)
T 1ywx_A 79 TIETKSVLEKNK 90 (102)
T ss_dssp HSSCHHHHHHSC
T ss_pred hhCchhheeecC
Confidence 999999999996
No 7
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-46 Score=264.57 Aligned_cols=94 Identities=80% Similarity=1.285 Sum_probs=91.2
Q ss_pred ccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHH
Q 034307 4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVES 83 (98)
Q Consensus 4 ~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~ 83 (98)
.+|||+|++|++||||+|+||+|+|+|||.|||||+||+++||+||+++++|+|||++|+|+||+|+|+|||+||||+|+
T Consensus 8 ~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~d~ 87 (138)
T 3iz6_U 8 PAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNLDA 87 (138)
T ss_dssp SSCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCHHH
T ss_pred ccEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHH
Confidence 37999999999999999999999999999999999999999999999339999999999999999999999999999999
Q ss_pred HHhcCcceeeeccC
Q 034307 84 AKKFEPKYRLIRVI 97 (98)
Q Consensus 84 ~kk~Epk~~l~Rn~ 97 (98)
|+++||+|+|+||+
T Consensus 88 aKk~EPkyrL~R~g 101 (138)
T 3iz6_U 88 AKKYEPKYRLIRNG 101 (138)
T ss_dssp HHSSCCCBTTTTTC
T ss_pred HHhcCchheEeecc
Confidence 99999999999996
No 8
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.39 E-value=4.6 Score=23.82 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..||++.++.. ++ .+.-++.+ ..|.+.|||.| |++.+.+.+
T Consensus 20 ~~~t~~~l~~~F~~~-~i--~~v~i~~~-----~~g~~~g~afV~f~~~~~a~~ 65 (91)
T 2dgw_A 20 FNVTEKNVMEFLAPL-KP--VAIRIVRN-----AHGNKTGYIFVDFSNEEEVKQ 65 (91)
T ss_dssp SSCCHHHHHHHHTTS-CC--SEEEEEEC-----TTSCEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Cc--eEEEEEEC-----CCCCCceEEEEEECCHHHHHH
Confidence 567789999988877 76 34444433 35678899988 677766554
No 9
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.74 E-value=8.1 Score=22.94 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++ .++ ....|.+..-+..-|.+.+.|||.| |.+.+.+.+
T Consensus 15 ~~~t~~~l~~~F~-~~G--~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~ 65 (98)
T 2cpf_A 15 FSTTEETLKGVFS-KVG--AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQK 65 (98)
T ss_dssp TTCCHHHHHHHHH-TTS--CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcC--CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHH
Confidence 4567888888776 455 1222322222223366799999988 778777654
No 10
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.19 E-value=9.4 Score=22.88 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++..++. =.++-++ ... .+.+.|||.| |.|.+.+.+
T Consensus 19 ~~~t~~~l~~~F~~~~G~-v~~v~i~---~~~--~g~~~g~afV~f~~~~~a~~ 66 (104)
T 2dhg_A 19 PDVDDGMLYEFFVKVYPS-CRGGKVV---LDQ--TGVSKGYGFVKFTDELEQKR 66 (104)
T ss_dssp TTCCHHHHHHHHHHHCTT-EEEEEEE---ECT--TCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-eEEEEEE---ECC--CCCccceEEEEECCHHHHHH
Confidence 456889999988887882 2222222 222 5568888877 777776644
No 11
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=75.39 E-value=7 Score=25.29 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=28.0
Q ss_pred HHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 38 KAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 38 r~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
..||++..+ .||. =.++.++..-.+.-+.+.+.|||.| |.+.+.|.+
T Consensus 39 eedl~eef~-k~G~-V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~ 86 (118)
T 3ue2_A 39 EGEVTEECG-KFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHK 86 (118)
T ss_dssp HHHHHHHHT-TTSC-EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHH
T ss_pred HHHHHHHHh-ccCC-EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHH
Confidence 456666554 5772 3344444444433356788898887 677776653
No 12
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=73.29 E-value=10 Score=22.30 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhHcCCCC-CCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRD-ANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~-~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++.++. +|+.+ .+.-++. .-..|.+.|||.| |.|.+.+.+
T Consensus 11 ~~~t~~~l~~~F~~-~G~~~v~~v~i~~----~~~~g~~kG~afV~f~~~~~a~~ 60 (90)
T 3p5t_L 11 WWTTDEDLTEAVHS-LGVNDILEIKFFE----NRANGQSKGFALVGVGSEASSKK 60 (90)
T ss_dssp TTCCHHHHHHHHHT-TTCCCCCCEEEEE----CTTTCCEEEEEEECC-CHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCCCceEEEEEEe----cCCCCccCcEEEEEECCHHHHHH
Confidence 45678888887754 55101 2333332 2235678899988 777776653
No 13
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=71.85 E-value=5.9 Score=27.35 Aligned_cols=31 Identities=6% Similarity=-0.024 Sum_probs=21.0
Q ss_pred eEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 56 AIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 56 ~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
..+.....+.-..+.+.|++.| |.+.+.+.+
T Consensus 159 ~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~ 190 (222)
T 3dxb_A 159 VIIYQEKQGEEEDAEIIVKIFVEFSIASETHK 190 (222)
T ss_dssp EEEEEEECCSSTTCCEEEEEEEEESSHHHHHH
T ss_pred EEEecCCCCcccCcCceeEEEEEECCHHHHHH
Confidence 3444454455556688999998 888887654
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=67.54 E-value=12 Score=23.77 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
..+.+.++|++.+.+ +| .=.+..++.+-.+ |.+.+.|||.| |.+.+.+.+
T Consensus 12 p~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~--~~~~~~g~afV~f~~~~~A~~ 62 (175)
T 3nmr_A 12 PRTWSEKDLRELFEQ-YG-AVYEINVLRDRSQ--NPPQSKGCCFVTFYTRKAALE 62 (175)
T ss_dssp CTTCCHHHHHHHHHT-TS-CEEEEEEEEECSS--SSCEEEEEEEEEESSHHHHHH
T ss_pred CCCCCHHHHHHHHHh-CC-CEEEEEEEecCCC--CCCCcceEEEEEECCHHHHHH
Confidence 356778888877754 55 1223323322222 23588999888 777776643
No 15
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.64 E-value=11 Score=22.66 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. +|. =.++. +...-..+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~ 72 (103)
T 2cqg_A 25 WKTTEQDLKEYFST-FGE-VLMVQ----VKKDLKTGHSKGFGFVRFTEYETQVK 72 (103)
T ss_dssp SSCCHHHHHHHHGG-GSC-EEEEE----EEECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHh-cCC-eEEEE----EEecCCCCCccceEEEEECCHHHHHH
Confidence 45678888877754 551 12222 2233334678888877 777776654
No 16
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.49 E-value=17 Score=21.57 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.+++ +|. =.+..++ .....+.+.|||.| |.+.+.+.+
T Consensus 18 ~~~~~~~l~~~f~~-~G~-i~~~~i~----~~~~~g~~~g~afV~f~~~~~a~~ 65 (104)
T 1p1t_A 18 YEATEEQLKDIFSE-VGP-VVSFRLV----YDRETGKPKGYGFCEYQDQETALS 65 (104)
T ss_dssp TTSCHHHHHHHHHT-TSC-CSEEEEE----EETTTTEEEEEEEEECSCHHHHHH
T ss_pred CcCCHHHHHHHHHh-cCC-eeEEEEE----eCCCCCccceEEEEEECCHHHHHH
Confidence 45678888887765 551 2233332 22235788899987 777777654
No 17
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=66.06 E-value=8.5 Score=24.00 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=13.5
Q ss_pred CEEEEEEEE-eCCHHHHHh
Q 034307 69 GKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 69 ~~s~g~a~I-Yds~e~~kk 86 (98)
+.+.|||.| |.+.+.|.+
T Consensus 65 ~~~~G~~fV~f~~~~~A~~ 83 (104)
T 1jmt_A 65 DHLVGNVYVKFRREEDAEK 83 (104)
T ss_dssp SSSEEEEEEEESCHHHHHH
T ss_pred CCccEEEEEEECCHHHHHH
Confidence 467888887 888877654
No 18
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.15 E-value=7.9 Score=23.26 Aligned_cols=45 Identities=27% Similarity=0.567 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++ .+|. =.++.++ .. .+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~--~g~~~g~afV~f~~~~~A~~ 70 (103)
T 2d9p_A 25 DGIDDERLRKAFS-PFGT-ITSAKVM----ME--GGRSKGFGFVCFSSPEEATK 70 (103)
T ss_dssp TTCCHHHHHHTTT-TTSC-EEEEEEE----EC--SSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEE----cC--CCCcCEEEEEEECCHHHHHH
Confidence 4567788876665 4551 1222222 22 5678888877 777776654
No 19
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=64.00 E-value=18 Score=22.05 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. ++. =.++-++.+ --.+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~----~~~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpz_A 35 QEFGDQDLLQMFMP-FGN-VVSAKVFID----KQTNLSKCFGFVSYDNPVSAQA 82 (115)
T ss_dssp SSCCHHHHHHHHGG-GSC-CSEEEEEEC----SSSCSEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEEEC----CCCCCcCccEEEEECCHHHHHH
Confidence 45678888887774 551 233333332 234678888877 777776654
No 20
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=63.97 E-value=23 Score=21.96 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=32.1
Q ss_pred CCCccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 1 m~~~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
|++..++|++.. .+.+++.|.|. +|=+-..|.++.|+..|++...+-++|
T Consensus 1 ~~~~~i~ikVk~------~~g~~v~~~vk----~~t~l~kl~~~y~~~~gi~~~~~rf~F 50 (91)
T 2io0_B 1 MANDHINLKVAG------QDGSVVQFKIK----RHTPLSKLMKAYCERQGLSMRQIRFRF 50 (91)
T ss_dssp ---CEEEEEEEC------TTSCEEEEEEE----TTSCTHHHHHHHHHHTTCCSTTEEEEE
T ss_pred CCCCeEEEEEEC------CCCCEEEEEEC----CCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 777778888874 23467888863 344457889999999997334444544
No 21
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=63.74 E-value=14 Score=20.74 Aligned_cols=48 Identities=15% Similarity=0.356 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk~ 87 (98)
...+.++|++-+++ +|. ...+ .+...-..+.+.|||.| |.|.+.+++.
T Consensus 9 ~~~t~~~l~~~F~~-~G~--i~~v---~i~~~~~~~~~~g~afV~f~~~~~a~~a 57 (75)
T 2mss_A 9 VNTTVEDVKHYFEQ-FGK--VDDA---MLMFDKTTNRHRGFGFVTFESEDIVEKV 57 (75)
T ss_dssp SSCCHHHHHHHHHT-TSC--CSEE---CCCBCSSSTTSCBEEEEECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC--EEEE---EEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 45678888887765 551 2222 22333345678888877 7888877664
No 22
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.00 E-value=16 Score=23.59 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHhHcCCC--CCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVR--DANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~--~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
-...+.+||++-.+..-.+. -.+..++.+ . .|+++|||.| |.+.+.+++
T Consensus 32 p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~----~gr~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 32 PFTATAEEVVAFFGQHCPITGGKEGILFVTY-P----DGRPTGDAFVLFACEEYAQN 83 (123)
T ss_dssp CTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-T----TSCEEEEEEECCSSHHHHHH
T ss_pred CCCCCHHHHHHHHHhhCCccCCcceEEEEEC-C----CCCEeeEEEEEECCHHHHHH
Confidence 45678899998887643320 135555554 2 3678888888 556655543
No 23
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=62.17 E-value=14 Score=22.13 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .+| .=.++.++.+ . .+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~-~~G-~i~~v~i~~~---~--~g~~~g~afV~f~~~~~A~~ 71 (105)
T 2dnh_A 25 KQQSEEDVLRLFQ-PFG-VIDECTVLRG---P--DGSSKGCAFVKFSSHTEAQA 71 (105)
T ss_dssp TTCCHHHHHHHHT-TTS-CEEEEEEEEC---S--SSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcC-CeEEEEEEEC---C--CCCcCcEEEEEeCCHHHHHH
Confidence 4567888887765 455 1122222222 2 3677888877 777776654
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=61.83 E-value=21 Score=21.73 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=35.3
Q ss_pred eeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 11 RKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 11 ~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
....+|-..+-.-+. |..- -...+.+||++.+++ +|- =.+.-+ ...-..|.+.|||.| |.+.+.|.+
T Consensus 9 ~~~~en~~~~gt~lf--V~nL-p~~~te~~L~~~F~~-~G~-I~~v~i----~~d~~tg~~kG~afV~f~~~~~A~~ 76 (99)
T 4fxv_A 9 HHHHENLYFQGTNLI--VNYL-PQNMTQDELRSLFSS-IGE-VESAKL----IRDKVAGHSLGYGFVNYVTAKDAER 76 (99)
T ss_dssp -------CCCCSEEE--EESC-CTTCCHHHHHHHHHT-TSC-EEEEEE----EECSSSCCEEEEEEEEESSHHHHHH
T ss_pred ccccccccCCCCEEE--EeCC-CCCCCHHHHHHHHHh-cCC-EEEeEe----eecCCCCcccccEEEEECCHHHHHH
Confidence 344556555554444 3332 356778899887754 661 122222 223345678899887 788877754
No 25
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=61.59 E-value=10 Score=23.82 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=25.5
Q ss_pred CHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 37 SKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 37 sr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...||++.. +.||- =.++.++.. .-..+.+.|||.| |.+.+.|.+
T Consensus 26 ~~~dl~~~f-~~~G~-V~~v~i~~~---~~~~~~~~G~~FV~f~~~~~A~~ 71 (105)
T 2pe8_A 26 LEVETKEEC-EKYGK-VGKCVIFEI---PGAPDDEAVRIFLEFERVESAIK 71 (105)
T ss_dssp CHHHHHHHG-GGGSC-EEEEEEEEC---SSCCTTTSEEEEEEESSHHHHHH
T ss_pred HHHHHHHHH-HhcCC-EEEEEEecC---CCCCCCCcEEEEEEECCHHHHHH
Confidence 467777666 47772 233333322 2223556788876 777776643
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.34 E-value=15 Score=21.40 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. +|. =.+..+ ...-..+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~f~~-~G~-v~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~ 72 (95)
T 2cqc_A 25 LYTTERDLREVFSK-YGP-IADVSI----VYDQQSRRSRGFAFVYFENVDDAKE 72 (95)
T ss_dssp SSCCHHHHHHHHHT-TSC-EEEEEE----EECSSSSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEE----EEcCCCCCcccEEEEEECCHHHHHH
Confidence 45678888887765 551 122222 233344677888877 777777654
No 27
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=60.72 E-value=22 Score=20.60 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.+++ +| ....+.+. . -.+.+.|||.| |.+.+.+.+
T Consensus 18 ~~~t~~~l~~~f~~-~G--~v~~~~i~---~--~~g~~~g~afV~f~~~~~a~~ 63 (92)
T 2dgv_A 18 FDFTWKMLKDKFNE-CG--HVLYADIK---M--ENGKSKGCGVVKFESPEVAER 63 (92)
T ss_dssp TTCCHHHHHHHHHT-TS--CEEEEEEE---E--SSSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC--CEEEEEEE---c--cCCCcceEEEEEECCHHHHHH
Confidence 45678888877765 55 12222222 2 25677888877 677776654
No 28
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.55 E-value=24 Score=20.70 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
-...+.+||++-++. ++. =.+..++.. -..+.+.|||.| |.+.+.+.+
T Consensus 24 p~~~t~~~l~~~F~~-~G~-v~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (98)
T 2cqp_A 24 PFTVSIDEILDFFYG-YQV-IPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (98)
T ss_dssp CTTCCHHHHHHHTTT-SCC-CTTTCEEEE----CSSSCEEEEEEEEESCHHHHHH
T ss_pred CCCCCHHHHHHHHHH-cCC-ccceEEEEE----CCCCCeeeEEEEEECCHHHHHH
Confidence 346678888877655 452 233433332 244677888877 777776654
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=58.69 E-value=30 Score=21.48 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++ .||- =.++.++. .-..+++.|||.| |++.+.|++
T Consensus 16 ~~~te~~L~~~F~-~~G~-i~~v~i~~----d~~tg~~rG~aFV~f~~~~~A~~ 63 (110)
T 3s8s_A 16 DNVRETFLKDMCR-KYGE-VEEVEILL----HPRTRKHLGLARVLFTSTRGAKE 63 (110)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEEE----CTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eeEEEEEE----CCCCCceeeEEEEEECCHHHHHH
Confidence 5667888887764 4662 22333333 3344678899877 788777654
No 30
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.66 E-value=8.5 Score=21.64 Aligned_cols=46 Identities=13% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
...+..||++-+++ +| .=.+..++.+ -..+.+.|||.| |.|.+.+.
T Consensus 10 ~~~t~~~l~~~F~~-~G-~v~~v~i~~~----~~~~~~~g~afV~f~~~~~a~ 56 (77)
T 1uaw_A 10 WQTTQEGLREYFGQ-FG-EVKECLVMRD----PLTKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp SSCCSHHHHHHHTT-TS-CCCCEEEECC----CCSSSCSSEEEECCCCTTHHH
T ss_pred CCCCHHHHHHHHHh-cC-CEEEEEEecC----CCCCCcCceEEEEEcCHHHHH
Confidence 45677888877765 55 1234444332 234567788877 56666554
No 31
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=54.99 E-value=27 Score=19.85 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. +| ...-+.=......++.+.|||.| |.+.+.+.+
T Consensus 14 ~~~t~~~l~~~F~~-~G----~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~ 62 (88)
T 4a8x_A 14 RNVTKDHIMEIFST-YG----KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEK 62 (88)
T ss_dssp TTCCHHHHHHHHHT-TS----CEEEEECCEETTEEEEECSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CC----CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHH
Confidence 45678888877754 55 12222222333334457888876 777776654
No 32
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=54.21 E-value=30 Score=20.10 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++-++. ++. -.+..++.. -..+.+.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ek1_A 25 FTVSIDEILDFFYG-YQV-IPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (95)
T ss_dssp TTCCHHHHHHHTTT-SCB-CTTCCEEEE----CTTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-ccceEEEEe----CCCCCEeeEEEEEECCHHHHHH
Confidence 46678888876655 452 233333332 245678888887 677776653
No 33
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=53.59 E-value=33 Score=20.43 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.+. .+|. =.++-++ ... .+.+.|||.| |.+.+.+++
T Consensus 39 ~~~t~~~l~~~F~-~~G~-i~~v~i~---~~~--~g~~~g~afV~f~~~~~a~~ 85 (107)
T 3ulh_A 39 FGVSDADIQELFA-EFGT-LKKAAVH---YDR--SGRSLGTADVHFERKADALK 85 (107)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEE---ECT--TSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEE---ECC--CCCcceEEEEEECCHHHHHH
Confidence 4567888887776 4551 1122222 222 5677888887 778777654
No 34
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.92 E-value=11 Score=22.94 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++..=.+ .+.++...+. .+.+.|||.| |++.+.+.+
T Consensus 35 ~~~t~~~l~~~f~~~G~v--~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 35 PRVTERDLVSLFARFQEK--KGPPIQFRMM----TGRMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp TTCCHHHHHHHTHHHHHS--SSSCCEEEEE----CSSSCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCc--cceEEEEEcC----CCccceEEEEEECCHHHHHH
Confidence 567888998866654443 3332333333 4556677766 777766654
No 35
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=51.82 E-value=34 Score=23.90 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.|...+. .=....-|.=++ .+.+.|||.| |.+.+.+.+
T Consensus 19 ~~~~~~~l~~~L~~~F~-~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~ 67 (282)
T 3pgw_A 19 EKIKKDELKKSLYAIFS-QFGQILDILVSR----SLKMRGQAFVIFKEVSSATN 67 (282)
T ss_pred CCCCHHHHHHHHHHHHh-ccCCeEEEEEcC----CCCcceEEEEEECCHHHHHH
Confidence 56778899876666655 233333332222 3446666665 666665543
No 36
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=51.77 E-value=31 Score=19.59 Aligned_cols=47 Identities=21% Similarity=0.443 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++ .+| .=.+. .+...-..+.+.|||.| |.|.+.+.+
T Consensus 16 ~~~t~~~l~~~F~-~~G-~i~~v----~i~~~~~~~~~~g~afV~f~~~~~A~~ 63 (87)
T 3bs9_A 16 PEITTAAIAAAFA-PFG-RISDA----RVVKDMATGKSKGYGFVSFFNKWDAEN 63 (87)
T ss_dssp TTCCHHHHHHHHG-GGS-CEEEE----EEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcC-CEeEE----EEEecCCCCccceEEEEEECCHHHHHH
Confidence 4678889888776 455 11222 22233345678888876 677776654
No 37
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=51.41 E-value=16 Score=21.73 Aligned_cols=48 Identities=17% Similarity=0.437 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHhHcCCCCC-CeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDA-NAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~-~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
-.+.+.+||++.+++ +|. .. +.-++ ..-..+.+.|||.| |.|.+.|.+
T Consensus 10 p~~~te~~l~~~F~~-~G~-~v~~v~i~----~d~~t~~~rg~aFV~F~~~~~A~~ 59 (91)
T 2lxi_A 10 PQAATEDDIRGQLQS-HGV-QAREVRLM----RNKSSGQSRGFAFVEFSHLQDATR 59 (91)
T ss_dssp CSSCCHHHHHHHHHH-HTC-CCSBCCSS----SCSSSCCCSSEEEEECSSHHHHHH
T ss_pred CCCCCHHHHHHHHHH-hCC-EeEEEEEE----ecCCCCCcCceEEEEecCHHHHHH
Confidence 356778899988875 451 22 22222 22345677788877 777777664
No 38
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=51.18 E-value=17 Score=22.62 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.+++ +|. =.++.++.+ . .+.+.|||.| |.|.+.|++
T Consensus 17 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~---~--~g~~~g~afV~F~~~~~A~~ 63 (116)
T 2fy1_A 17 RETNEKMLKAVFGK-HGP-ISEVLLIKD---R--TSKSRGFAFITFENPADAKN 63 (116)
T ss_dssp TTCCHHHHHHHHHT-SSC-CSEEEEECS---T--TTTCCCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEEC---C--CCCcccEEEEEECCHHHHHH
Confidence 45678888877765 551 233333322 2 4567788877 777776654
No 39
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.96 E-value=37 Score=20.19 Aligned_cols=47 Identities=13% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.+++ ++- =.++. +...-..+.+.|||.| |.+.+.+.+
T Consensus 26 ~~~t~~~l~~~F~~-~G~-v~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~ 73 (105)
T 2dh8_A 26 WSTTQETLRSYFSQ-YGE-VVDCV----IMKDKTTNQSRGFGFVKFKDPNCVGT 73 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEE----EEECSSSCCEEEEEEEEESSTTHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEE----EeeCCCCCCcceEEEEEECCHHHHHH
Confidence 46778888877765 551 12222 3333345678888877 677666554
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=49.96 E-value=42 Score=20.60 Aligned_cols=45 Identities=16% Similarity=0.410 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
.+.+.++|++.+++ ||- =.++-++.+ .+.+.|||.| |++.+.+.+
T Consensus 15 ~~~te~~L~~~F~~-~G~-v~~v~i~~d------~~~~kg~afV~f~~~~~A~~ 60 (115)
T 4f25_A 15 KSIDNKALYDTFSA-FGN-ILSCKVVCD------ENGSKGYGFVHFETQEAAER 60 (115)
T ss_dssp TTCCHHHHHHHHGG-GSC-EEEEEEEEE------TTEEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHhc-cCC-EEEEEEeec------CCCCCceEEEEECCHHHHHH
Confidence 46678888887654 661 122223222 2347788876 677776644
No 41
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=49.22 E-value=54 Score=21.64 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
....+.++|++.++ .+|. .+.+-| .+...--.|.+.|||.| |.+.+.+.+
T Consensus 64 p~~~te~~L~~~F~-~~G~--i~v~~v-~i~~d~~tg~skGfaFV~f~~~~~A~~ 114 (156)
T 3n9u_C 64 SWWTTDQQLIQVIR-SIGV--YDVVEL-KFAENRANGQSKGYAEVVVASENSVHK 114 (156)
T ss_dssp CTTCCHHHHHHHHH-HTTC--CCEEEE-EEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCCHHHHHHHHH-HHCC--ccEEEE-EEEecCCCCccceEEEEEECCHHHHHH
Confidence 35667888888774 5661 122222 22223335678899988 888877654
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=49.21 E-value=38 Score=19.93 Aligned_cols=47 Identities=21% Similarity=0.238 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCC--------eEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDAN--------AIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~--------~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++-+++ +|. =.+ .- +...-..+.+.|||.| |.+.+.+.+
T Consensus 23 ~~~t~~~l~~~F~~-~G~-i~~~~~~~~~~v~----i~~~~~~g~~~G~afV~f~~~~~a~~ 78 (99)
T 2la6_A 23 ENVTIESVADYFKQ-IGI-IKTNKKTGQPMIN----LYTDRETGKLKGEATVSFDDPPSAKA 78 (99)
T ss_dssp SSCCHHHHHHHHTT-TSC-BCEETTTTEESEE----EEECTTTCSEEEEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-EeeccccccccEE----EEecCCCCCeeeEEEEEECCHHHHHH
Confidence 45678888877764 451 122 22 2222345678888877 777776653
No 43
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=49.15 E-value=25 Score=20.87 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.+++.=.+ .+..++.+ +.|||.| |.+.+.+.+
T Consensus 10 ~~~t~~~l~~~F~~~G~i--~~v~i~~~---------~~g~afV~f~~~~~a~~ 52 (101)
T 2hvz_A 10 TGAGKGELERAFSYYGPL--RTVWIARN---------PPGFAFVEFEDPRDAED 52 (101)
T ss_dssp SSCSHHHHHHHHHHHCCC--SEEEEESS---------SSSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCe--EEEEEeeC---------CCCEEEEEECCHHHHHH
Confidence 456788888877654333 44444444 5667766 667666544
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=48.68 E-value=40 Score=19.98 Aligned_cols=47 Identities=19% Similarity=0.413 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. +|. =.++ .+...-..+.+.|||.| |.+.+.+.+
T Consensus 33 ~~~t~~~l~~~f~~-~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 80 (106)
T 1p27_B 33 EEATEEDIHDKFAE-YGE-IKNI----HLNLDRRTGYLKGYTLVEYETYKEAQA 80 (106)
T ss_dssp TTCCHHHHHHHHGG-GSC-EEEE----EEEECTTTSSEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHhc-cCC-eEEE----EEEecCCCCceeeEEEEEECCHHHHHH
Confidence 46678888877754 551 1222 23344455788888887 788776654
No 45
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=47.91 E-value=37 Score=19.36 Aligned_cols=47 Identities=26% Similarity=0.478 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .+|- =.+..+ ...-..+.+.|||.| |.+.+.+.+
T Consensus 21 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~g~~~g~afV~f~~~~~a~~ 68 (87)
T 3s7r_A 21 WDTSKKDLKDYFT-KFGE-VVDCTI----KMDPNTGRSRGFGFILFKDAASVEK 68 (87)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEE----EECTTTCCEEEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EEEEEE----eecCCCCccccEEEEEECCHHHHHH
Confidence 4567888887774 4551 122222 223334677888876 666665543
No 46
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.61 E-value=29 Score=19.76 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++-++ .+| . |.--.+...-..+.+.|||.| |.+.+.+.+
T Consensus 15 ~~~t~~~l~~~f~-~~G----~-i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ 62 (85)
T 1x4e_A 15 PGTTDQDLVKLCQ-PYG----K-IVSTKAILDKTTNKCKGYGFVDFDSPSAAQK 62 (85)
T ss_dssp TTCCHHHHHTTST-TTS----C-EEEEEEECCSSSCSCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcC----C-eEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 4556677665544 344 1 211223333345667888877 788777654
No 47
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=47.60 E-value=15 Score=30.58 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=35.9
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcC--CCCCCeEEEeceeecCCCC
Q 034307 22 KQFVIDVLHPGRANVSKAELKEKLARMYD--VRDANAIFVFKFRTHFGGG 69 (98)
Q Consensus 22 kEi~~~v~h~~~~TPsr~ei~~klA~~~~--v~~~~~ivV~~~~t~fG~~ 69 (98)
|=+.+.+.-.+-...-+.+|+++|++.|+ + +++.|+|..-.||-|-+
T Consensus 55 rvv~Vs~D~~~~~~~v~~~V~~~L~~~~g~~~-~~~nV~isaTHTHSgP~ 103 (646)
T 2zws_A 55 RLVYVNTDLGMIFQAVHLKVLARLKAKYPGVY-DENNVMLAATHTHSGPG 103 (646)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHHSTTTC-CTTTEEEEECCBSBEEC
T ss_pred EEEEEEECcccCCHHHHHHHHHHHHHHhCCCC-ChhHEEEEeeeeCCCCc
Confidence 33333344434445558999999999999 7 89999999999999875
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.57 E-value=41 Score=19.77 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..||++.+++ +|. ..-|.=+... .+.+.|||.| |.+.+.+++
T Consensus 27 ~~~t~~~l~~~F~~-~G~----i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~ 73 (100)
T 2do4_A 27 FSCTKEELEEICKA-HGT----VKDLRLVTNR--AGKPKGLAYVEYENESQASQ 73 (100)
T ss_dssp TTCCHHHHHHHHTT-TSC----EEEEEEEECT--TSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC----eEEEEEEECC--CCCEEeEEEEEECCHHHHHH
Confidence 45678888877765 551 1222212222 5677888876 777777654
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.84 E-value=19 Score=21.34 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++..=.+ .++.++.+- ..+.+.|||.| |.+.+.+.+
T Consensus 22 ~~~t~~~l~~~f~~~G~i--~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 1x5s_A 22 FDTNEQSLEQVFSKYGQI--SEVVVVKDR----ETQRSRGFGFVTFENIDDAKD 69 (102)
T ss_dssp TTCCHHHHHHHHHHHSCC--CEEEECCCS----SSCSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCe--EEEEEEeCC----CCCCcccEEEEEECCHHHHHH
Confidence 467788888888754332 333332222 23556777776 777776654
No 50
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=46.64 E-value=22 Score=20.86 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++.. + +...+ ...+.+.|||.| |.+.+.+.+
T Consensus 26 ~~~t~~~l~~~F~~~-g--~v~~~--------~~~~~~~g~afV~f~~~~~a~~ 68 (96)
T 1fjc_A 26 FNITEDELKEVFEDA-L--EIRLV--------SQDGKSKGIAYIEFKSEADAEK 68 (96)
T ss_dssp SSCCHHHHHHHHCSE-E--EECCE--------EETTEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHhhC-C--cEEEe--------CCCCCcceEEEEEECCHHHHHH
Confidence 456788888776653 3 11222 245678889887 777776654
No 51
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=46.02 E-value=11 Score=24.50 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHH---HhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKL---ARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~kl---A~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
...+..++++.| =..||- -..|.+ .+ .+.+.|||.| |++.+.|.
T Consensus 39 ~~~~e~~L~~~L~~~F~~~G~--I~~v~i--~~----~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 39 PEVPKEKLQALLYALASSQGD--ILDIVV--DL----SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp TTSCHHHHHHHHHHHHHHHSC--EEEEEE--CC----CCSSCCCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCCC--eEEEEe--cc----CCCcCCEEEEEECCHHHHH
Confidence 566788888654 455661 222332 22 2345667665 77766554
No 52
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=45.32 E-value=4.2 Score=24.50 Aligned_cols=47 Identities=32% Similarity=0.574 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
....+..+|++.++..-.+ . + .++..-.| +.+.|||.| |.+.+.+.+
T Consensus 26 p~~~t~~~l~~~F~~~G~v-~-~-~~~~~~~~----g~~~g~afV~f~~~~~a~~ 73 (101)
T 1fj7_A 26 NPNKSVAELKVAISELFAK-N-D-LAVVDVRT----GTNRKFGYVDFESAEDLEK 73 (101)
T ss_dssp CTTSCHHHHHHHHHHHHHH-H-T-CCCCEEEE----ETTTTEEEEEESSHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCc-c-e-EEEecCCC----CCcCcEEEEEECCHHHHHH
Confidence 4567889999988877665 3 2 34444444 345566665 667666544
No 53
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.17 E-value=25 Score=21.92 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
-...+..||++.++. ++. -.+.+++..-. .+.+.|||.| |.+.+.++
T Consensus 34 p~~~te~~l~~~F~~-~G~-v~~~~~~~~~~----~g~~~G~afV~F~~~~~a~ 81 (124)
T 1wel_A 34 PFEAENKHVIDFFKK-LDI-VEDSIYIAYGP----NGKATGEGFVEFRNEADYK 81 (124)
T ss_dssp CTTCCHHHHHHHSCS-SCB-CTTTCEEEECT----TSSEEEEEEEEBSSSHHHH
T ss_pred CCCCCHHHHHHHHHh-cCC-ccceEEEEECC----CCCCCeEEEEEECCHHHHH
Confidence 356677888877654 552 34433332222 4667888877 45554443
No 54
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=45.06 E-value=54 Score=20.45 Aligned_cols=47 Identities=23% Similarity=0.426 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. +|. =.++ .+...-..+.+.|||.| |.+.+.+.+
T Consensus 52 ~~~~~~~l~~~F~~-~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 52 TTVDEVQLRQLFER-YGP-IESV----KIVCDRETRQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp TTCCHHHHHHHHHH-HSC-EEEE----EEEEETTTTEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEE----EEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 45678888887765 451 1222 23333346788999987 788877654
No 55
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=44.68 E-value=50 Score=19.91 Aligned_cols=47 Identities=19% Similarity=0.423 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++ .+|. =.++ .+......+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 72 (115)
T 2dgo_A 25 PEITTEDIKAAFA-PFGR-ISDA----RVVKDMATGKSKGYGFVSFFNKWDAEN 72 (115)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEE----EEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEE----EEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 4567888888776 5561 1222 22333345677888877 677776654
No 56
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=44.17 E-value=8 Score=22.84 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..||++.|...+. .-....-|.=.+| +.+.|||.| |.|.+.+.+
T Consensus 18 ~~~~~~~l~~~l~~~f~-~~G~i~~v~i~~~----~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 18 EKIKKDELKKSLHAIFS-RFGQILDILVSRS----LKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp TTSCHHHHHHHHHHHHG-GGSCEEEEECCHH----HHHTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-hCCCEEEEEEEcC----CCcCcEEEEEeCCHHHHHH
Confidence 56678888864444443 1222222222222 345566665 777776644
No 57
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=44.09 E-value=13 Score=21.66 Aligned_cols=48 Identities=15% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk~ 87 (98)
...+..+|++-+++ +|- =.+..++.+ -..+.+.|||.| |+|.++.+.+
T Consensus 11 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~----~~~~~~~g~afV~f~~~~a~~a~ 59 (90)
T 2ki2_A 11 YSATSEQVKELFSQ-FGK-VFNVKLIYD----RETKKPKGFGFVEMQEESVSEAI 59 (90)
T ss_dssp TTSSHHHHTTTHHH-HTC-CSEEEECCC----SSSCCCCEEEEEEECTTHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEEc----CCCCCcceEEEEEECCHHHHHHH
Confidence 45678888887765 551 233333222 223566777766 6666644333
No 58
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=43.89 E-value=53 Score=20.74 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=33.0
Q ss_pred eeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEecee
Q 034307 11 RKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFR 63 (98)
Q Consensus 11 ~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~ 63 (98)
..++...|+...++.|.|.- ..++.||++.+-++|+| +..-|..+.
T Consensus 11 iTEKa~~~~e~n~~~F~V~~----~AnK~qIK~aVe~lf~V---kV~~VnT~~ 56 (92)
T 3tve_T 11 LSEKAYAGFAEGKYTFWVHP----KATKTEIKNAVETAFKV---KVVKVNTLH 56 (92)
T ss_dssp CSHHHHTTTTTTEEEEEECT----TCCHHHHHHHHHHHTTC---CEEEEEEEE
T ss_pred cCHHHHHHhhCCEEEEEECC----CCCHHHHHHHHHHHhCC---ceeeeeeee
Confidence 34455667777889998643 45799999999999997 444444444
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.67 E-value=48 Score=19.38 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCC-CeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDA-NAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~-~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.+++ ++- =. ++-++. .-..+.+.|||.| |.+.+.+.+
T Consensus 19 ~~~t~~~l~~~F~~-~G~-i~~~v~i~~----~~~~g~~~g~afV~f~~~~~a~~ 67 (99)
T 2div_A 19 PYMDENFISRAFAT-MGE-TVMSVKIIR----NRLTGIPAGYCFVEFADLATAEK 67 (99)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCCEEEEEE----CSSSCCEEEEEEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-cceEEEEee----cCCCCCcCCEEEEEeCCHHHHHH
Confidence 45678888877765 551 23 333332 2235678888877 677776654
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=43.38 E-value=42 Score=19.39 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. +|. =.++-++ ..-. +.+.|||.| |.+.+.+++
T Consensus 26 ~~~~~~~l~~~F~~-~G~-i~~v~i~----~~~~-g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ywk_A 26 ARVREEILYELFLQ-AGP-LTKVTIC----KDRE-GKPKSFGFVCFKHPESVSY 72 (95)
T ss_dssp TTCCHHHHHHHHGG-GSC-EEEEEEE----ECTT-SCEEEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEE----ECCC-CCCceEEEEEECCHHHHHH
Confidence 45678888877765 551 1222222 2222 667788877 666665544
No 61
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=42.65 E-value=9 Score=21.46 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++-+++ +|. =.+.. +......+.+.|||.| |.|.+.+++
T Consensus 9 ~~~t~~~l~~~F~~-~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 1iqt_A 9 PDTPEEKIREYFGG-FGE-VESIE----LPMDNKTNKRRGFCFITFKEEEPVKK 56 (75)
T ss_dssp SSCCHHHHHHHHHH-HSC-CSEEC----CCCSCCCSSSCCCEEEECSSSHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEE----EEecCCCCCcCCEEEEEECCHHHHHH
Confidence 45678888887766 551 22222 2222334566777766 666655544
No 62
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=42.45 E-value=20 Score=21.44 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
..+.+.++|++.+++.=.+ .++.++. .-..+.+.|||.| |.+.+.+.
T Consensus 22 p~~~t~~~l~~~F~~~G~i--~~v~i~~----~~~~g~~~g~afV~f~~~~~A~ 69 (106)
T 2dgp_A 22 PRNLDEKDLKPLFEEFGKI--YELTVLK----DRFTGMHKGCAFLTYCERESAL 69 (106)
T ss_dssp CTTCCHHHHHHHHHHHSCC--CEEECCC----CSSSCSCCSEEEEEESSHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCe--eEEEEEe----cCCCCCcceEEEEEECCHHHHH
Confidence 3567888998887764333 2322222 2223455667766 56655554
No 63
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.34 E-value=53 Score=19.50 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEE
Q 034307 35 NVSKAELKEKLARMYDVRDANAIFV 59 (98)
Q Consensus 35 TPsr~ei~~klA~~~~v~~~~~ivV 59 (98)
+.+-.+++++|++..++...++-++
T Consensus 31 ~~TV~~LK~~i~~~~gip~~~qrL~ 55 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVIGVPQSFQKLI 55 (92)
T ss_dssp SCBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred cCcHHHHHHHHHHHHCcCHHHEEEE
Confidence 4667999999999999843444444
No 64
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=42.32 E-value=12 Score=21.56 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=13.2
Q ss_pred CCEEEEEEEE-eCCHHHHHh
Q 034307 68 GGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 68 ~~~s~g~a~I-Yds~e~~kk 86 (98)
.|.+.|||.| |.|.+.|.+
T Consensus 43 ~g~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 43 DGKTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp TTBCCCEEEEEESSHHHHHH
T ss_pred CCcEeEEEEEEECCHHHHHH
Confidence 4577788876 777776654
No 65
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.10 E-value=44 Score=19.30 Aligned_cols=47 Identities=21% Similarity=0.492 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.+++ ++ .=.++.+ ...-..+.+.|||.| |.+.+.+.+
T Consensus 15 ~~~t~~~l~~~f~~-~G-~v~~v~i----~~~~~~~~~~g~afV~f~~~~~a~~ 62 (95)
T 2dnz_A 15 FNITEDMLRGIFEP-FG-KIDNIVL----MKDSDTGRSKGYGFITFSDSECARR 62 (95)
T ss_dssp TTCCHHHHHHHHTT-TS-CEEEEEE----ECCSSSCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC-CEeEEEE----eecCCCCceeeEEEEEECCHHHHHH
Confidence 45678888877754 55 1122222 222234566777766 777777654
No 66
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=41.81 E-value=27 Score=20.73 Aligned_cols=45 Identities=18% Similarity=0.419 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
...+.++|++-++. +|. =.++-++ ... .+.+.|||.| |.+.+.+.
T Consensus 19 ~~~t~~~l~~~F~~-~G~-i~~v~i~---~~~--~g~~~g~afV~f~~~~~a~ 64 (102)
T 2xs2_A 19 VRMDETEIRSFFAR-YGS-VKEVKII---TDR--TGVSKGYGFVSFYNDVDVQ 64 (102)
T ss_dssp TTCCHHHHHHHHGG-GSC-EEEEEEE---ECT--TSCEEEEEEEEESSCCCHH
T ss_pred CCCCHHHHHHHHHh-CCC-eEEEEEE---ECC--CCCccceEEEEECCHHHHH
Confidence 46678888877654 551 1222222 222 5677788876 55554443
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=41.71 E-value=28 Score=20.47 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.+++ +| . |.-..+...-..+.+.|||.| |+|.+.+.+
T Consensus 12 ~~~t~~~l~~~F~~-~G--~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 59 (96)
T 2x1f_A 12 YDQTEEQILDLCSN-VG--P---VINLKMMFDPQTGRSKGYAFIEFRDLESSAS 59 (96)
T ss_dssp TTCCHHHHHHHHHT-TS--C---EEEEECCBCTTTCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC--C---EEEEEEEeCCCCCccceEEEEEECCHHHHHH
Confidence 45677888777764 45 1 111223333345677888877 777777654
No 68
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.70 E-value=53 Score=19.36 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .+| . |.--.+...-..+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~f~-~~G----~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 72 (103)
T 2cq0_A 25 EDTRETDLQELFR-PFG----S-ISRIYLAKDKTTGQSKGFAFISFHRREDAAR 72 (103)
T ss_dssp TTCCHHHHHTTST-TTC----C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCC----C-eEEEEEeecCCCCceeeEEEEEECCHHHHHH
Confidence 4567777775554 344 1 222223333345678888877 777776654
No 69
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.52 E-value=14 Score=22.73 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++ .++. =.++ .+...--.+.+.|||.| |.+.+.+++
T Consensus 27 ~~~t~~~l~~~F~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 74 (116)
T 2cqd_A 27 YHTTDASLRKYFE-GFGD-IEEA----VVITDRQTGKSRGYGFVTMADRAAAER 74 (116)
T ss_dssp SSCCHHHHHHHHH-TTSC-EEEE----EESCCSSSCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-eeEE----EEEEcCCCCccceEEEEEECCHHHHHH
Confidence 4667888888776 4551 1122 22222223566777776 777777654
No 70
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.50 E-value=76 Score=21.10 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEE
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIF 58 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~iv 58 (98)
.+.-+-.|++++||..+++ +++.+.
T Consensus 34 ~~d~TV~dLKe~ls~~~~i-P~e~qr 58 (118)
T 2daf_A 34 KVDTILKYLKDHFSHLLGI-PHSVLQ 58 (118)
T ss_dssp CSSSCSHHHHHHHHHHHTC-CTTTEE
T ss_pred CCCCcHHHHHHHHHhhhCC-ChHHEE
Confidence 3566789999999999997 666554
No 71
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.18 E-value=16 Score=22.56 Aligned_cols=49 Identities=10% Similarity=0.254 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.+++ ||. -...++..-.|. ..|.+.|||.| |++.+.+++
T Consensus 18 ~~~te~~L~~~F~~-~G~--i~~~~~~~~~~~-~~g~~~G~aFV~f~~~~~a~~ 67 (114)
T 2dnl_A 18 PDIDEDEITASFRR-FGP--LVVDWPHKAESK-SYFPPKGYAFLLFQEESSVQA 67 (114)
T ss_dssp TTCCHHHHHHHTTT-TCC--CCEECTTSSSSC-CCSCTTSEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC--EEEEEeecCCCC-CCCCcccEEEEEECCHHHHHH
Confidence 45678888776654 552 222222222221 12678889988 888887653
No 72
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=41.17 E-value=69 Score=20.50 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. ++. =.++ .+...-..+.+.|||.| |.|.+.+.+
T Consensus 49 ~~~t~~~l~~~F~~-~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~A~~ 96 (156)
T 1h2v_Z 49 FYTTEEQIYELFSK-SGD-IKKI----IMGLDKMKKTACGFCFVEYYSRADAEN 96 (156)
T ss_dssp TTCCHHHHHHHHGG-GSC-EEEE----EEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEE----EEEecCCCCccceEEEEEECCHHHHHH
Confidence 45678888877754 551 1222 23333345678888877 778776654
No 73
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=40.84 E-value=51 Score=21.49 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHhHcCCC--CCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVR--DANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~--~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
..+.+.+||++-++. ++.. -.+..++.+ . - |+++|||.| |.|.+.+++
T Consensus 53 p~~~te~dL~~~F~~-~G~v~~v~~v~i~~d---~-~-g~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 53 PWSCSVEDVQNFLSD-CTIHDGAAGVHFIYT---R-E-GRQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp CTTCCHHHHHHHTTT-CCCSSSSTTEEEEEC---S-S-SCEEEEEEEECSSHHHHHH
T ss_pred CCCCCHHHHHHHHHH-hCCcCceeEEEEEEC---C-C-CCCCeEEEEEECCHHHHHH
Confidence 456678888877766 5510 134444433 2 2 678888887 667666553
No 74
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=40.33 E-value=56 Score=19.50 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=14.3
Q ss_pred CCCEEEEEEEE-eCCHHHHHh
Q 034307 67 GGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 67 G~~~s~g~a~I-Yds~e~~kk 86 (98)
..|.+.|||.| |.+.+.+.+
T Consensus 49 ~tg~~kG~afV~f~~~~~A~~ 69 (100)
T 3ns6_A 49 ATGKTKGFLFVECGSMNDAKK 69 (100)
T ss_dssp TTTEECSEEEEEESSHHHHHH
T ss_pred CCCccceEEEEEECCHHHHHH
Confidence 44788899987 777766653
No 75
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.23 E-value=37 Score=19.94 Aligned_cols=47 Identities=21% Similarity=0.467 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++.+++ +|- =.++.+ ...-..+.+.|||.| |.+.+.+.+
T Consensus 20 ~~~t~~~l~~~F~~-~G~-i~~v~i----~~~~~~~~~~g~afV~f~~~~~a~~ 67 (99)
T 2dgs_A 20 HNCGETELREYFKK-FGV-VTEVVM----IYDAEKQRPRGFGFITFEDEQSVDQ 67 (99)
T ss_dssp SSCCHHHHHHHHSS-SSC-EEEEEE----CCCTTTCSCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEE----EeCCCCCCCCceEEEEECCHHHHHH
Confidence 45678888877765 551 122222 222234556777766 777776654
No 76
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.21 E-value=22 Score=22.21 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
+..+..+|++.++ .|| +-..|.|- +.+.|||.| |++.+.+.
T Consensus 27 ~~~te~~L~~~F~-~~G--~V~~v~i~--------~~~rGfaFVeF~~~~~A~ 68 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYG--EVLNLVLS--------SKKPGTAVVEFATVKAAE 68 (100)
T ss_dssp CSCCHHHHHHHHH-TTS--CEEEEEEE--------SSSSSEEEEEESCHHHHH
T ss_pred CCCCHHHHHHHHH-hcC--CEEEEEEc--------cCCCCEEEEEECCHHHHH
Confidence 4556788877665 456 12223332 356778876 66666554
No 77
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.15 E-value=60 Score=19.51 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. +| ...-+. +...- .+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~~-~G----~i~~~~-i~~~~-~g~~~g~afV~f~~~~~a~~ 81 (114)
T 1x5o_A 35 LSMDEQELENMLKP-FG----QVISTR-ILRDS-SGTSRGVGFARMESTEKCEA 81 (114)
T ss_dssp TTCCHHHHHHTTTT-TS----CEEEEE-EEECS-SSCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC----CEEEEE-EEECC-CCCcceEEEEEECCHHHHHH
Confidence 45667777765543 44 122222 22222 5778888887 677776654
No 78
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.50 E-value=55 Score=18.90 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++.+++ ++ .-...+.+ .+.|||.| |.+.+.+.+
T Consensus 18 ~~~t~~~l~~~F~~-~G-~vv~~~~~----------~~~g~afV~f~~~~~A~~ 59 (93)
T 2cqh_A 18 PAVTADDLRQLFGD-RK-LPLAGQVL----------LKSGYAFVDYPDQNWAIR 59 (93)
T ss_dssp TTCCHHHHHHHHHH-TT-CCCSSCEE----------EETTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHHH-cC-CceEEEEE----------cCCCEEEEEECCHHHHHH
Confidence 45678888877755 55 21333333 25678877 777776543
No 79
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=39.29 E-value=18 Score=21.11 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..||++.+++. .+ .+. .+. .+.|||.| |.+.+.+.+
T Consensus 15 ~~~t~~~l~~~F~~~-~v--~~~-~i~---------~~~g~afV~f~~~~~a~~ 55 (88)
T 1wg1_A 15 QDSNCQEVHDLLKDY-DL--KYC-YVD---------RNKRTAFVTLLNGEQAQN 55 (88)
T ss_dssp SSCCHHHHHHHTCSS-CC--CCE-EEE---------GGGTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Ce--EEE-EEe---------CCCcEEEEEECCHHHHHH
Confidence 566788998888877 76 233 232 45677776 666665543
No 80
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.16 E-value=20 Score=21.87 Aligned_cols=47 Identities=13% Similarity=0.326 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .||. =.++.++.+ -..+.+.|||.| |.+.+.+.+
T Consensus 37 ~~~te~~l~~~F~-~~G~-i~~v~i~~~----~~~g~~~g~afV~f~~~~~a~~ 84 (116)
T 1x4b_A 37 FETTEESLRNYYE-QWGK-LTDCVVMRD----PASKRSRGFGFVTFSSMAEVDA 84 (116)
T ss_dssp TCCCHHHHHHHHT-SSCC-CSEEEEECC----TTTSSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEEEC----CCCCCcCceEEEEeCCHHHHHH
Confidence 4667888887775 4552 233333332 233556777766 667766544
No 81
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=38.99 E-value=44 Score=23.43 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .||. =.+..++.+ . .|.+.|||.| |.+.+.+.+
T Consensus 106 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~---~--~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 106 PVVSNELLEQAFS-QFGP-VEKAVVVVD---D--RGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEEEEE---T--TSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEeeeC---C--CCCcCcEEEEEeCCHHHHHH
Confidence 4567888888775 4662 233333333 2 4667777776 777766543
No 82
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.96 E-value=21 Score=22.47 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 25 VIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 25 ~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
.+-|-.- ..+.+..||++-.... ++ .+..++.+ .- |+++|||.| |.+.+.+.
T Consensus 18 ~v~V~nL-p~~~te~dl~~~F~~~-~v--~~v~i~~d---~~--g~~~G~afV~F~~~~~a~ 70 (109)
T 2dnn_A 18 YVSVHGM-PFSAMENDVRDFFHGL-RV--DAVHLLKD---HV--GRNNGNGLVKFLSPQDTF 70 (109)
T ss_dssp EEEEECC-CSSCCHHHHHHHTTTS-CC--CEEEECCC---TT--CCCCSEEEEECSSHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHhccC-Ce--eEEEEEEC---CC--CCCCeEEEEEECCHHHHH
Confidence 3334442 4567889999888876 75 34444433 22 456777777 55555544
No 83
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=38.81 E-value=38 Score=20.91 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
....+.+||++.+++ +|- =.++.++.+ . .+.+.|||.| |.+.+.+.+
T Consensus 44 p~~~t~~~l~~~F~~-~G~-v~~v~i~~~---~--~g~~~g~afV~f~~~~~A~~ 91 (124)
T 2kt5_A 44 DFGVSDADIQELFAE-FGT-LKKAAVDYD---R--SGRSLGTADVHFERRADALK 91 (124)
T ss_dssp CSSCCHHHHHHHHHT-TSC-CSEEEEECC---S--SSSCCSEEEEEESSHHHHHH
T ss_pred CCCCCHHHHHHHHHh-cCC-eeEEEEEEC---C--CCCEeeEEEEEECCHHHHHH
Confidence 346678888887766 551 233333322 2 3556677766 677766654
No 84
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.60 E-value=22 Score=21.08 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.+++ ++. =.++.++.+ ...+.+.|||.| |.+.+.+.+
T Consensus 22 ~~~t~~~l~~~f~~-~G~-i~~v~i~~~----~~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2cqb_A 22 EEVDDKVLHAAFIP-FGD-ITDIQIPLD----YETEKHRGFAFVEFELAEDAAA 69 (102)
T ss_dssp SSCCHHHHHHHHTT-TSC-CCCEECCCC----SSSCCCSSEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHhhc-cCC-EEEEEEEec----CCCCCcceEEEEEECCHHHHHH
Confidence 45678888887766 551 234333332 233567778877 666666544
No 85
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.05 E-value=37 Score=20.09 Aligned_cols=45 Identities=4% Similarity=0.150 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++..=.+ .++.++.+ -+. +.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~~G~i--~~v~i~~~----~~~--~~g~afV~f~~~~~a~~ 70 (103)
T 2cqi_A 25 RDVTEVLILQLFSQIGPC--KSCKMITE----HTS--NDPYCFVEFYEHRDAAA 70 (103)
T ss_dssp TTCCHHHHHHHHHHHSCE--EEEEEECC----CCS--SCCEEEEEESSHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCE--eEEEEEec----CCC--CCCEEEEEECCHHHHHH
Confidence 456788888877554332 23333333 122 3567765 667666543
No 86
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=37.42 E-value=30 Score=22.89 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=18.3
Q ss_pred EEEEEEcC-CCCCCCHHHHH-----HHHHhHcCC
Q 034307 24 FVIDVLHP-GRANVSKAELK-----EKLARMYDV 51 (98)
Q Consensus 24 i~~~v~h~-~~~TPsr~ei~-----~klA~~~~v 51 (98)
+.+.=.|| |.++||++|+. .+.++++++
T Consensus 71 vIl~HNHPSG~~~PS~~D~~~T~~l~~a~~ll~I 104 (126)
T 2qlc_A 71 IILVHNHPSGDVQPSNADKQVTSILKKAGDLLQI 104 (126)
T ss_dssp EEEEEECSSSCCSCCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 34444899 46899999985 334455564
No 87
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=37.40 E-value=72 Score=19.68 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=31.3
Q ss_pred ccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 4 ~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
..|+|.|+. +..+.+.+.+++. ++-+-.+++++|....|+.....-.++
T Consensus 14 ~~v~l~It~----s~~~~~~~~~~v~----~~~TV~~LK~kI~~~~GiP~~~QrL~~ 62 (95)
T 2kjr_A 14 DFIKVNVSN----SHNDAVAFEVKLA----KDLTVAQLKTKLEILTGGCAGTMKVQV 62 (95)
T ss_dssp CEEEEEEEE----SSCSCEEEEEEEE----TTCBHHHHHHHHHHHHCSCTTTEEEEE
T ss_pred CeEEEEEEE----CCCCceEEEEEeC----ccCHHHHHHHHHHHHHCcCHHHeEEEE
Confidence 457777765 4455444554432 566679999999999998433333433
No 88
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=37.20 E-value=73 Score=19.69 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .+|. =.+..++ .....+.+.|||.| |+|.+.+.+
T Consensus 97 ~~~t~~~l~~~f~-~~G~-i~~~~i~----~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 97 VNVDDETLRNAFK-DFPS-YLSGHVM----WDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp TTCCHHHHHHHHT-TSTT-EEEEEEE----ECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCC-eeEEEEE----ecCCCCCcceEEEEEeCCHHHHHH
Confidence 4567888887774 4551 2233232 23345677888877 677776654
No 89
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=37.19 E-value=74 Score=19.70 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. +| .=.+..+ ...-..|.+.|||.| |.+.+.+.+
T Consensus 12 ~~~~~~~l~~~f~~-~G-~i~~v~~----~~~~~~~~~~g~afV~f~~~~~A~~ 59 (167)
T 1fxl_A 12 QNMTQEEFRSLFGS-IG-EIESCKL----VRDKITGQSLGYGFVNYIDPKDAEK 59 (167)
T ss_dssp TTCCHHHHHHHHHT-TS-CEEEEEE----EECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC-CeEEEEE----EeCCCCCcceeEEEEEECCHHHHHH
Confidence 45678888876654 55 1122222 223334667888877 777777654
No 90
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=36.75 E-value=69 Score=20.13 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=12.6
Q ss_pred CccEEEEEeeeeeccCcceeEEEEE
Q 034307 3 DKAITIRTRKFMTNRLLSRKQFVID 27 (98)
Q Consensus 3 ~~~~~i~i~k~~~N~LL~RkEi~~~ 27 (98)
++.|+|+....-.=|.|+++-+.+.
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~ 30 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKIS 30 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEE
T ss_pred CCeEEEEEEecCCCCcccccEEEcC
Confidence 4568888877777788888776654
No 91
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.75 E-value=41 Score=19.82 Aligned_cols=44 Identities=32% Similarity=0.483 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++.++. + .+..++.. ...+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~----~~~~~~~~----~~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2fc8_A 25 EDTTEETLKESFDG-S----VRARIVTD----RETGSSKGFGFVDFNSEEDAKA 69 (102)
T ss_dssp TTCCHHHHHHTSTT-C----SEEEEEEC----SSSCSEEEEEEEECSSHHHHHH
T ss_pred CccCHHHHHHHhcC-C----eEEEEEec----CCCCCcCcEEEEEECCHHHHHH
Confidence 45677888776662 1 23333332 234578888887 777776654
No 92
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=36.74 E-value=56 Score=18.23 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .+|- =.+. .+......+.+.|||.| |.+.+.+.+
T Consensus 11 ~~~t~~~l~~~f~-~~G~-i~~~----~i~~~~~~~~~~g~afV~f~~~~~a~~ 58 (83)
T 3md1_A 11 VNVDDETLRNAFK-DFPS-YLSG----HVMWDMQTGSSRGYGFVSFTSQDDAQN 58 (83)
T ss_dssp TTCCHHHHHHHHT-TSTT-EEEE----EEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eeEE----EEEEcCCCCCccceEEEEECCHHHHHH
Confidence 4556778877664 3551 1222 22333345677888876 777776654
No 93
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=36.72 E-value=1.1e+02 Score=21.44 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
....+..+|++.++ .|++ .+++-| .|.+.--.+++.|||.| |.+.+.++
T Consensus 77 ~~~~te~~L~~~F~-~~G~--~~v~~v-~i~~d~~tg~skGfaFV~f~~~~~a~ 126 (229)
T 3q2s_C 77 TWWTTDEDLTEAVH-SLGV--NDILEI-KFFENRANGQSKGFALVGVGSEASSK 126 (229)
T ss_dssp CTTCCHHHHHHHHH-TTTC--CCEEEE-EEEECTTTCCEEEEEEEEESCTTHHH
T ss_pred CCCCCHHHHHHHHH-HHCC--cceEEE-EEEecCCCCccceEEEEEECCHHHHH
Confidence 35667888888774 5662 112111 22223235677788877 66665444
No 94
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=36.37 E-value=72 Score=19.36 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .+|. |.-..+...-..+.+.|||.| |.+.+.+.+
T Consensus 36 ~~~te~~l~~~F~-~~G~-----i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 83 (108)
T 2jrs_A 36 FNITEDMLRGIFE-PFGR-----IESIQLMMDSETGRSKGYGFITFSDSECAKK 83 (108)
T ss_dssp SSCCHHHHHHHHT-TTSC-----EEEEEEEEETTTTEEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-----eEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 4567888887764 4551 222223333356788899987 778777664
No 95
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=36.35 E-value=30 Score=24.16 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFK 61 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~ 61 (98)
+=.|-+.++++.||+.+++ +++.|-|.-
T Consensus 104 Ki~p~~~~m~~~ia~~L~~-~~~~V~vKA 131 (152)
T 1iv3_A 104 KLGPHRKALVDSLSRLMRL-PQDRIGLTF 131 (152)
T ss_dssp CCGGGHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred cCHHHHHHHHHHHHHHhCC-CCceEEEEE
Confidence 6689999999999999996 999988864
No 96
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=36.09 E-value=33 Score=24.13 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEece
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKF 62 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~ 62 (98)
+=.|-+.++++.||+.+++ +++.|-|.-=
T Consensus 106 Ki~p~~~~m~~~ia~~L~~-~~~~V~vKAt 134 (159)
T 1t0a_A 106 KMAPHIEDMRQVLAADLNA-DVADINVKAT 134 (159)
T ss_dssp CCGGGHHHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred cChHHHHHHHHHHHHHhCC-CCceEEEEEe
Confidence 6689999999999999996 9999988643
No 97
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=35.92 E-value=86 Score=20.13 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .||. =.+.. +...-..+.+.|||.| |.+.+.+.+
T Consensus 114 ~~~t~~~l~~~F~-~~G~-i~~v~----i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 114 EDTEEHHLRDYFE-QYGK-IEVIE----IMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEE----EEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-cCCC-eEEEE----EeecCCCCCccceEEEEECCHHHHHH
Confidence 4566788887765 4551 11222 2233345678888887 777776654
No 98
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.58 E-value=29 Score=21.64 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=30.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCC--CCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 26 IDVLHPGRANVSKAELKEKLARMYDVRD--ANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 26 ~~v~h~~~~TPsr~ei~~klA~~~~v~~--~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
+-|-.- ..+.+.+||++.+.. ++... .++.++.+ .- +++.|||.| |.+.+.+++
T Consensus 20 l~V~nL-p~~~te~~l~~~F~~-~G~~~~v~~v~i~~~---~~--g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 20 VKLRGL-PWSCSIEDVQNFLSD-CTIHDGVAGVHFIYT---RE--GRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp EEEESC-CTTCCHHHHHHHTTT-SCBTTGGGGEEEEEC---SS--SCEEEEEEEEBSSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHH-cCCccCceeEEEEEC---CC--CCCCeEEEEEECCHHHHHH
Confidence 334442 456678888877765 44101 23333332 22 678899887 777776654
No 99
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=35.57 E-value=34 Score=24.08 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEece
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKF 62 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~ 62 (98)
+=.|-+.++++.||+.+++ +++.|-|.-=
T Consensus 105 Ki~p~~~~m~~~ia~~L~~-~~~~V~vKAt 133 (160)
T 1gx1_A 105 KMLPHIPQMRVFIAEDLGC-HMDDVNVKAT 133 (160)
T ss_dssp CCGGGHHHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCC-CCceEEEEEc
Confidence 6689999999999999996 9999988643
No 100
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.22 E-value=39 Score=20.75 Aligned_cols=46 Identities=26% Similarity=0.274 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++-++. +|. =.++.++ .... +.+.|||.| |++.+.+.+
T Consensus 21 ~~~te~~L~~~F~~-~G~-v~~v~i~----~d~~-g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 21 TDATLDDIKEWLED-KGQ-VLNIQMR----RTLH-KAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp TTCCHHHHHHHHHT-SSC-EEEEEEE----CCCT-TSCCCEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHhh-cCC-EEEEEEE----ECCC-CCCccEEEEEECCHHHHHH
Confidence 45678888876654 661 1222222 2223 667888876 888877764
No 101
>2okr_C MAP kinase-activated protein kinase 2; NLS, NES, heterodimer, docking groove, transferase; 2.00A {Homo sapiens}
Probab=35.15 E-value=0.95 Score=23.10 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=10.3
Q ss_pred EEEeeeeeccCccee
Q 034307 8 IRTRKFMTNRLLSRK 22 (98)
Q Consensus 8 i~i~k~~~N~LL~Rk 22 (98)
|+-.+.-+||||.+|
T Consensus 3 iK~L~~snNpLL~kR 17 (26)
T 2okr_C 3 IKKIEDASNPLLLKR 17 (26)
T ss_dssp CCCTTTCCCHHHHHH
T ss_pred ccccccccCHHHHHH
Confidence 344566789999865
No 102
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=35.07 E-value=34 Score=24.22 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
+.+.-.+++++||+.+++ +++.|++.
T Consensus 59 ~~~~~~~l~~~la~~~~~-~~~~i~~~ 84 (361)
T 3ftb_A 59 PDVNYRRLNKSIENYLKL-KDIGIVLG 84 (361)
T ss_dssp CCTTCHHHHHHHHHHHTC-CSCEEEEE
T ss_pred CCccHHHHHHHHHHHhCC-CcceEEEc
Confidence 445668999999999995 88877764
No 103
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=34.69 E-value=71 Score=18.81 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=22.1
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEE
Q 034307 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIF 58 (98)
Q Consensus 22 kEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~iv 58 (98)
+.+.++|. ++-+-.+++++|++..++ +++..-
T Consensus 15 ~~~~~~v~----~~~TV~~LK~~I~~~~gi-p~~~qr 46 (88)
T 2hj8_A 15 RSSTYEVR----LTQTVAHLKQQVSGLEGV-QDDLFW 46 (88)
T ss_dssp CEEEEEEE----SSSBHHHHHHHHHHHTCS-CTTTEE
T ss_pred CEEEEEEC----CCCcHHHHHHHHHHHhCC-ChhHEE
Confidence 44555543 345679999999999997 555433
No 104
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=34.65 E-value=86 Score=20.34 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=32.0
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEecee
Q 034307 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFR 63 (98)
Q Consensus 22 kEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~ 63 (98)
|.++++|+-| .-||--|+..+||+.-|+ +.=+|.|..+.
T Consensus 7 rRlVLDVlKP--h~p~i~d~A~~l~~~~gV-~gVnItv~EvD 45 (97)
T 2raq_A 7 IRIVLDILKP--HEPIIPEYAKYLSELRGV-EGVNITLMEID 45 (97)
T ss_dssp EEEEEEEECC--SCSCHHHHHHHHHHSTTC-CEEEEEEEEEC
T ss_pred eEEEEEecCC--CCCCHHHHHHHHHhCCCc-ceEEEEEEEee
Confidence 5689999966 789999999999999997 76666666554
No 105
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=34.49 E-value=26 Score=24.95 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 35 NVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 35 TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
.|.-.+++++||+.+++ +++.|++.
T Consensus 49 ~~~~~~lr~~la~~~~~-~~~~i~~t 73 (350)
T 3fkd_A 49 EPDAGTLRQMLAKRNSV-DNNAILVT 73 (350)
T ss_dssp CTTCHHHHHHHHHHTTC-CGGGEEEE
T ss_pred CCcHHHHHHHHHHHhCc-CHHHEEEc
Confidence 34447999999999996 87777764
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=34.10 E-value=35 Score=20.87 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. +|. =.++. +...-..|.+.|||.| |.+.+.+.+
T Consensus 35 ~~~te~~L~~~F~~-~G~-i~~v~----i~~~~~tg~~kg~afV~f~~~~~A~~ 82 (109)
T 2rs2_A 35 WQTTQEGLREYFGQ-FGE-VKECL----VMRDPLTKRSRGFGFVTFMDQAGVDK 82 (109)
T ss_dssp TTCCHHHHHHHHTT-TSC-EEEEE----ECCCTTTCCCTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHc-cCC-eEEEE----EEECCCCCCcCcEEEEEECCHHHHHH
Confidence 46678888776654 551 11222 2222234667777776 777776654
No 107
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=34.06 E-value=22 Score=24.94 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
+.|.-.+++++||+.+++ +++.|++.
T Consensus 49 ~~~~~~~lr~~la~~~~~-~~~~i~~t 74 (337)
T 3p1t_A 49 PFDAEPRVMRKLAEHFSC-PEDNLMLV 74 (337)
T ss_dssp CTTHHHHHHHHHHHHHTS-CGGGEEEE
T ss_pred CCCchHHHHHHHHHHhCc-CHHHEEEe
Confidence 456778999999999995 77666653
No 108
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=33.61 E-value=37 Score=18.51 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=18.9
Q ss_pred EEEEcCCCCCCC-HH----HHHHHHHhHcCCCCCCeEEE
Q 034307 26 IDVLHPGRANVS-KA----ELKEKLARMYDVRDANAIFV 59 (98)
Q Consensus 26 ~~v~h~~~~TPs-r~----ei~~klA~~~~v~~~~~ivV 59 (98)
+.|...++.|+. +. +|-+.|++.+|+ +++.|.|
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~-~~~~v~V 41 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGE-PYEEVRV 41 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTC-CGGGEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCC-CcccEEE
Confidence 344443445665 33 455567777895 7766654
No 109
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=33.54 E-value=35 Score=24.00 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFK 61 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~ 61 (98)
+=.|-+.++++.||+.+++ +++.|-|.-
T Consensus 107 Ki~p~~~~m~~~ia~~L~~-~~~~V~vKA 134 (160)
T 2pmp_A 107 KISPHKETIRSNLSKLLGA-DPSVVNLKA 134 (160)
T ss_dssp CCGGGHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred cCHHHHHHHHHHHHHHHCC-CcceEEEEE
Confidence 6689999999999999996 999988764
No 110
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=32.93 E-value=38 Score=20.31 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. +|. |.-..+......+.+.|||.| |.+.+.+.+
T Consensus 36 ~~~t~~~l~~~F~~-~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 83 (110)
T 1oo0_B 36 EEAQEDEIQEKFCD-YGE-----IKNIHLNLDRRTGFSKGYALVEYETHKQALA 83 (110)
T ss_dssp TTCCHHHHHHHHGG-GSC-----EEEEECCBCTTTSSBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-----EEEEEEEecCCCCCcceEEEEEECCHHHHHH
Confidence 46678888876654 551 122223333345677788876 777776654
No 111
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=32.89 E-value=35 Score=24.02 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEece
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKF 62 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~ 62 (98)
+=.|-+.++++.||+.+++ +++.|-|.-=
T Consensus 110 Kl~p~~~~m~~~la~~L~~-~~~~V~vKAt 138 (162)
T 3re3_A 110 KMLPHIEKMRACLANILEI-QISQINIKAT 138 (162)
T ss_dssp CCGGGHHHHHHHHHHHHTS-CGGGEEEEEE
T ss_pred cchhHHHHHHHHHHHHHCC-CCceEEEEEe
Confidence 6689999999999999996 9899988643
No 112
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=32.88 E-value=75 Score=20.09 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++.++. +|. =.++. +...-..+.+.|||.| |++.+.+++
T Consensus 56 ~~~te~~L~~~F~~-~G~-I~~v~----i~~d~~tg~~~G~afV~F~~~~~A~~ 103 (129)
T 2kxn_B 56 LYTTERDLREVFSK-YGP-IADVS----IVYDQQSRRSRGFAFVYFENVDDAKE 103 (129)
T ss_dssp TSCCHHHHHHHHTT-TSC-EEEEE----EECCSSSSCCCCEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEE----EEecCCCCccceEEEEEECCHHHHHH
Confidence 45677888777654 551 12222 2222234566777776 777777654
No 113
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=32.18 E-value=1.1e+02 Score=20.52 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
....+.+||++.++. +|. =.++-++.+ . .+.+.|||.| |.+.+.+.+
T Consensus 97 p~~~te~~L~~~F~~-~G~-I~~v~i~~d---~--~g~~kG~afV~F~~~~~A~~ 144 (177)
T 2f3j_A 97 DFGVSDADIQELFAE-FGT-LKKAAVDYD---R--SGRSLGTADVHFERRADALK 144 (177)
T ss_dssp CSCCCHHHHHHHHHH-TSC-CSEEEECCC---T--TSSCSCCEEEEESCHHHHHH
T ss_pred CCCCCHHHHHHHHHh-cCC-eEEEEEEEC---C--CCCEeeEEEEEeCCHHHHHH
Confidence 356788999888876 661 223222222 1 4566677766 677766653
No 114
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.08 E-value=25 Score=21.45 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
...+.+||++-++. +++ - ++.++.+ . .++++|||.| |.+.+.++
T Consensus 25 ~~~te~~l~~~F~~-~G~-~-~v~i~~d---~--~g~~~G~afV~F~~~~~a~ 69 (102)
T 1wez_A 25 YRATENDIYNFFSP-LNP-M-RVHIEIG---P--DGRVTGEADVEFATHEDAV 69 (102)
T ss_dssp TTCCHHHHHHSSCS-CCC-S-EEEEEES---S--SSCEEEEEEEECSSSHHHH
T ss_pred CCCCHHHHHHHHHH-cCc-e-EEEEEEC---C--CCCEeeEEEEEECCHHHHH
Confidence 45667888776654 664 2 4444443 2 4678888887 55555444
No 115
>1kvd_B SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_B
Probab=31.83 E-value=39 Score=20.59 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHhH
Q 034307 31 PGRANVSKAELKEKLARM 48 (98)
Q Consensus 31 ~~~~TPsr~ei~~klA~~ 48 (98)
..++|||+.+++..-|.+
T Consensus 15 idkgtpskndlqnmsadl 32 (77)
T 1kvd_B 15 IDKGTPSKNDLQNMSADL 32 (77)
T ss_dssp CCCCCCCHHHHHHHHHHH
T ss_pred hhcCCCChhhHHHhhHHH
Confidence 358999999999876654
No 116
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.45 E-value=35 Score=19.82 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe-EEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANA-IFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~-ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. ++. =.+. -++.+ -..+.+.|||.| |.|.+.+.+
T Consensus 15 ~~~t~~~l~~~F~~-~G~-i~~~~~i~~~----~~~g~~~g~afV~f~~~~~A~~ 63 (96)
T 1x5t_A 15 PEIDEKLLYDTFSA-FGV-ILQTPKIMRD----PDTGNSKGYAFINFASFDASDA 63 (96)
T ss_dssp TTCCHHHHHHHHHT-TSC-BSSCCEECCC----TTTCSCCSEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEEEEEc----CCCCCcCeEEEEEECCHHHHHH
Confidence 45678888877765 552 2333 23222 234556677766 777776654
No 117
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.29 E-value=48 Score=19.09 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.+.+ +| ...-| .+...-..+.+.|||.| |.+.+.+.+
T Consensus 26 ~~~t~~~l~~~f~~-~G----~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~ 73 (94)
T 2e5h_A 26 FSLTNNDLYRIFSK-YG----KVVKV-TIMKDKDTRKSKGVAFILFLDKDSAQN 73 (94)
T ss_dssp TTSCHHHHHHHTTT-TS----CEEEE-EECCCSSSCCCTTCEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC----CeEEE-EEEeCCCCCCcccEEEEEECCHHHHHH
Confidence 45667777766643 44 11111 22222233456666665 777776654
No 118
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=31.18 E-value=54 Score=19.85 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
...+.+||++.+++ ||- |.-..+...-..+.+.|||.| |.+.+.+.
T Consensus 50 ~~~t~~~l~~~F~~-~G~-----i~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 96 (118)
T 2khc_A 50 QEFTDTDLASTFLP-FGN-----VISAKVFIDKQTSLSKCFGFVSFDNPDSAQ 96 (118)
T ss_dssp TTCCHHHHHHHTTT-SCE-----EEEEEECCCSSSSCCCCEEEEEEESSHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-----EEEEEEEeCCCCCCcCcEEEEEECCHHHHH
Confidence 45677888776653 551 211222222234566677765 55555444
No 119
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=30.68 E-value=48 Score=19.52 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhcCc
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKFEP 89 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk~Ep 89 (98)
....+.++|++..++ ||- =.++-++. .+.|||.| |++.+.+++.--
T Consensus 20 p~~~te~~L~~~F~~-~G~-i~~v~i~~---------~srGfaFV~F~~~~~A~~~~~ 66 (89)
T 3d2w_A 20 TEDMTAEELQQFFCQ-YGE-VVDVFIPK---------PFRAFAFVTFADDKVAQSLCG 66 (89)
T ss_dssp CTTCCHHHHHHHHTT-TSC-EEEEECCS---------SCCSEEEEEESCHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhc-cCC-EEEEEEee---------CCCCEEEEEECCHHHHHHHcC
Confidence 456677888877654 561 12222222 27788877 888888875543
No 120
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=30.51 E-value=35 Score=20.51 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHhHc-CC
Q 034307 34 ANVSKAELKEKLARMY-DV 51 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~-~v 51 (98)
.|.|.+.|+..|.+.| |+
T Consensus 31 ~tvT~K~VR~~Le~~~pg~ 49 (70)
T 1q1v_A 31 EEVTMKQICKKVYENYPTY 49 (70)
T ss_dssp GGCCHHHHHHHHHHHCSSS
T ss_pred HHHhHHHHHHHHHHHccCC
Confidence 4777788888888888 64
No 121
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=30.44 E-value=56 Score=20.70 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=29.4
Q ss_pred eeeeeccCcce-eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCe
Q 034307 11 RKFMTNRLLSR-KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANA 56 (98)
Q Consensus 11 ~k~~~N~LL~R-kEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ 56 (98)
..++...|+.. .++.|.|. +..++.||++.+-++|+| +..-
T Consensus 16 iTEKa~~~~e~~n~~~F~V~----~~AnK~eIK~AVE~lf~V-kV~~ 57 (93)
T 3r8s_T 16 VSEKASTAMEKSNTIVLKVA----KDATKAEIKAAVQKLFEV-EVEV 57 (93)
T ss_dssp CSHHHHHHHHTTSEEEEEEC----SSCCHHHHHHHHHHHSCC-CCCE
T ss_pred cCHHHHHHHHhCCEEEEEEC----CCCCHHHHHHHHHHHcCC-ceEE
Confidence 33444555665 78888864 345799999999999997 5443
No 122
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=30.03 E-value=30 Score=24.98 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 35 NVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 35 TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
.|.-.+++++||+.+++ +++.|++.
T Consensus 57 ~~~~~~lr~~la~~~~~-~~~~v~~~ 81 (356)
T 1fg7_A 57 ECQPKAVIENYAQYAGV-KPEQVLVS 81 (356)
T ss_dssp CSSCHHHHHHHHHHHTS-CGGGEEEE
T ss_pred CccHHHHHHHHHHHhCC-ChHHEEEc
Confidence 34568999999999996 77776654
No 123
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=29.96 E-value=31 Score=24.68 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
+.|.-.+++++||+.+++ +++.|++.
T Consensus 63 ~~~~~~~lr~~la~~~g~-~~~~i~~t 88 (360)
T 3hdo_A 63 PSASSQKLREVAGELYGF-DPSWIIMA 88 (360)
T ss_dssp CCSSCHHHHHHHHHHHTC-CGGGEEEE
T ss_pred CCCchHHHHHHHHHHhCc-CcceEEEc
Confidence 344568999999999995 77777764
No 124
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=29.77 E-value=43 Score=24.06 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEecee
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFR 63 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~ 63 (98)
+=.|-+.++++.||+.+++ +++.|-|.-=-
T Consensus 127 Kl~p~~~~mr~~la~~L~i-~~~~VnVKATT 156 (183)
T 3f0d_A 127 KLAPHIDAMRANIAADLDL-PLDRVNVKAKT 156 (183)
T ss_dssp CCGGGHHHHHHHHHHHHTC-CGGGEEEEEEC
T ss_pred cchhHHHHHHHHHHHHHCC-CcceEEEEEec
Confidence 6688999999999999996 98999886433
No 125
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.77 E-value=1e+02 Score=19.02 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHhHc--CCCCCCe
Q 034307 36 VSKAELKEKLARMY--DVRDANA 56 (98)
Q Consensus 36 Psr~ei~~klA~~~--~v~~~~~ 56 (98)
-+-.+++++|++.. ++ .++.
T Consensus 45 ~TV~~LK~~i~~~~~~gi-p~~~ 66 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESV-PDPE 66 (107)
T ss_dssp CBHHHHHHHHHHHCTTTC-CCSS
T ss_pred CCHHHHHHHHHHHhccCC-Chhh
Confidence 56899999999999 97 5554
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.68 E-value=53 Score=19.27 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.+++.=.+ . ..++. | .+.|||.| |.+.+.+.+
T Consensus 29 ~~~t~~~l~~~F~~~G~v-~--~~~~~------~--~~~g~afV~f~~~~~a~~ 71 (97)
T 2e5j_A 29 RDARVSDLKRALRELGSV-P--LRLTW------Q--GPRRRAFLHYPDSAAAQQ 71 (97)
T ss_dssp TTCCHHHHHHHHHHTTCC-C--SEEEE------E--TTTTEEEEECSSHHHHHH
T ss_pred CcCcHHHHHHHHHhcCCE-E--EEEEc------C--CCCcEEEEEECCHHHHHH
Confidence 466788888777654333 2 33332 2 45567766 777766543
No 127
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.47 E-value=33 Score=20.94 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=24.7
Q ss_pred CCCCHHHHH--HHHHhHcCCCCCCeEEEeceeecCC-CCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELK--EKLARMYDVRDANAIFVFKFRTHFG-GGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~--~klA~~~~v~~~~~ivV~~~~t~fG-~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||+ ..+-..||. =.+..++.+ ..+| .+.+.|||.| |++.+.|.+
T Consensus 25 ~~~~~~~l~~~~~~F~~~G~-i~~v~i~~~--~~~~~~~~~~G~afV~f~~~~~A~~ 78 (111)
T 2cpi_A 25 QRLADPEVLKRPEYFGKFGK-IHKVVINNS--TSYAGSQGPSASAYVTYIRSEDALR 78 (111)
T ss_dssp TTTCCHHHHHSTTTTTTTSC-EEEEEEECC--SSCCSSSCCCEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHhhccCC-EEEEEEecC--CCcCccCCCCeEEEEEECcHHHHHH
Confidence 345567776 244455661 122222111 1122 2356688877 777776643
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=28.62 E-value=63 Score=19.18 Aligned_cols=38 Identities=32% Similarity=0.548 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 35 NVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 35 TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
..+..+|++.++. || .-..+.+ +.|||.| |++.+.+.+
T Consensus 34 ~~t~~~L~~~F~~-~G--~v~~v~i-----------~~g~afV~f~~~~~A~~ 72 (97)
T 2xnq_A 34 NVSKEDLFRIFSP-YG--HIMQINI-----------KNAFGFIQFDNPQSVRD 72 (97)
T ss_dssp CCCHHHHHHHHGG-GS--CEEEEEE-----------CSSEEEEEESSHHHHHH
T ss_pred cCCHHHHHHHHHh-cC--CEEEEEE-----------eCCEEEEEECCHHHHHH
Confidence 5678888877765 56 2223333 1567766 777776654
No 129
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.44 E-value=94 Score=18.25 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
....+.++|++.++.. ++ .++-+ ...-..+.+.|||.| |.+.+.+.+
T Consensus 24 p~~~t~~~l~~~F~~~-gi--~~v~i----~~~~~~g~~~g~afV~f~~~~~a~~ 71 (103)
T 2dng_A 24 PFNTVQGDIDAIFKDL-SI--RSVRL----VRDKDTDKFKGFCYVEFDEVDSLKE 71 (103)
T ss_dssp CTTCCHHHHHHHTTTS-CE--EEEEE----EECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CCCCCHHHHHHHHHhC-Cc--eEEEE----eecCCCCccceEEEEEECCHHHHHH
Confidence 3566788888777655 54 22222 223334677888876 777777665
No 130
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=28.38 E-value=82 Score=19.99 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
....+.++|++-+ ..+|. =.++.++ ..-..|.+.|||.| |.|.+.+.+
T Consensus 79 ~~~~~~~~l~~~F-~~~G~-v~~~~i~----~~~~~g~~~g~afV~f~~~~~a~~ 127 (158)
T 2kn4_A 79 TYRTSPDTLRRVF-EKYGR-VGDVYIP----RDRYTKESRGFAFVRFHDKRDAED 127 (158)
T ss_dssp CTTCCHHHHHHHH-HHHSC-EEEEECC----CCSSCTTSCCEEEEEESBHHHHHH
T ss_pred CCCCCHHHHHHHH-HhcCC-eEEEEEe----ecCCCCccceEEEEEECCHHHHHH
Confidence 3567888998887 45661 1122221 22124556677766 677666543
No 131
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.19 E-value=1e+02 Score=18.46 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=16.0
Q ss_pred EEEEEEEcCCCCCCCHHHHHHHHHhHcC
Q 034307 23 QFVIDVLHPGRANVSKAELKEKLARMYD 50 (98)
Q Consensus 23 Ei~~~v~h~~~~TPsr~ei~~klA~~~~ 50 (98)
...+-|-.. ....+..||++.++ .++
T Consensus 15 ~~~l~V~nL-p~~~t~~~l~~~F~-~~G 40 (108)
T 1x4c_A 15 ENRVVVSGL-PPSGSWQDLKDHMR-EAG 40 (108)
T ss_dssp CCEEEEESC-CSSCCHHHHHHHHG-GGS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHH-hcC
Confidence 344445553 35677888887665 455
No 132
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.02 E-value=53 Score=19.63 Aligned_cols=44 Identities=9% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++.+++ ++ ....|.+ ..+ +.+.|||.| |.+.+.+.+
T Consensus 32 ~~~t~~~l~~~F~~-~G--~v~~~~i--~~~----~~~~g~afV~f~~~~~A~~ 76 (109)
T 1x4a_A 32 PDIRTKDIEDVFYK-YG--AIRDIDL--KNR----RGGPPFAFVEFEDPRDAED 76 (109)
T ss_dssp TTCCHHHHHHHHGG-GS--CEEEEEE--CCS----SSSSCCEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC--CeEEEEE--EEC----CCCCcEEEEEECCHHHHHH
Confidence 45688888877766 55 1222333 111 235677765 777776654
No 133
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.02 E-value=69 Score=18.93 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCC-CEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGG-GKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~-~~s~g~a~I-Yds~e~~kk 86 (98)
....+.+||++.++. +++ .=..+...-.. +.+.|||.| |.+.+.+++
T Consensus 24 p~~~t~~~l~~~F~~-~Gi------~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (104)
T 1wi8_A 24 PYDVTEESIKEFFRG-LNI------SAVRLPREPSNPERLKGFGYAEFEDLDSLLS 72 (104)
T ss_dssp CSSCCHHHHHHHTTT-SCE------EEEECCBCSSCTTSBCSCEEEEESSHHHHHH
T ss_pred CCcCCHHHHHHHHHH-CCc------eEEEEecCCCCCCCcCeEEEEEECCHHHHHH
Confidence 345677787765553 232 11222222222 667778876 777777654
No 134
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=27.99 E-value=1.1e+02 Score=18.96 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .+| +...+ .+...--.+.+.|||.| |+|.+.+.+
T Consensus 99 ~~~t~~~l~~~f~-~~G--~i~~~---~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 99 RTITDDQLDTIFG-KYG--SIVQK---NILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp TTCCHHHHHHHHT-SSS--CEEEE---EEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHhhh-cCC--cEEEE---EEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 4566777777664 355 11112 12222234667888877 777776654
No 135
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=27.77 E-value=22 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeEE
Q 034307 32 GRANVSKAELKEKLARMYDVRDANAIF 58 (98)
Q Consensus 32 ~~~TPsr~ei~~klA~~~~v~~~~~iv 58 (98)
|...|+.. ...+||+.||+ +++.++
T Consensus 46 g~~~~~~~-~l~~ia~~l~~-~~~~l~ 70 (76)
T 3bs3_A 46 NKSQPSLD-MLVKVAELLNV-DPRQLI 70 (76)
T ss_dssp TSSCCCHH-HHHHHHHHHTS-CGGGGB
T ss_pred CCCCCCHH-HHHHHHHHHCc-CHHHHh
Confidence 45566654 45789999997 776554
No 136
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.43 E-value=19 Score=20.86 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk~ 87 (98)
...+.++|++.++ .+|. =.++.++.. +.|||.| |++.+.+++.
T Consensus 15 ~~~te~~l~~~F~-~~G~-i~~v~i~~~---------~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 15 GDMTEDELREFFS-QYGD-VMDVFIPKP---------FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SSSCHHHHHHHST-TTSC-CCEEECCSS---------CCSCCEEECSCHHHHHHT
T ss_pred CCCCHHHHHHHHH-HcCC-eeEEEEecC---------CCCEEEEEECCHHHHHHH
Confidence 4567788877664 4551 223222221 6788877 8888888764
No 137
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.41 E-value=35 Score=20.23 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeec-CCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTH-FGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~-fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. || . ..-|. +... -..+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~G--~--i~~v~-i~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (107)
T 2cph_A 25 FQANQREIRELFST-FG--E--LKTVR-LPKKMTGTGAHRGFGFVDFITKQDAKK 73 (107)
T ss_dssp TTCCHHHHHHHHHT-TS--C--EEEEE-CCCCCSSSCSSCSEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHc-cC--C--eEEEE-EecCCCCCCCcCceEEEEECCHHHHHH
Confidence 45678888877765 55 1 11121 2222 235566677766 677766654
No 138
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.29 E-value=51 Score=19.90 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. +|. =.++. +...-..+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~~-~G~-i~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~ 82 (114)
T 2cq4_A 35 ARIRPRDLEDFFSA-VGK-VRDVR----IISDRNSRRSKGIAYVEFCEIQSVPL 82 (114)
T ss_dssp TTCCHHHHHHHHTT-TSC-EEEEE----ECCSCCSSSCCCCEEEEESCGGGHHH
T ss_pred CCCCHHHHHHHHHh-CCC-EeEEE----EEecCCCCccCcEEEEEeCcHHHHHH
Confidence 45677888776644 551 12222 2222333566777766 677666554
No 139
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.20 E-value=57 Score=21.39 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=28.8
Q ss_pred CCC-CCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeC-CHHHHHhcC
Q 034307 33 RAN-VSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYD-SVESAKKFE 88 (98)
Q Consensus 33 ~~T-Psr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYd-s~e~~kk~E 88 (98)
... +|+++|++.+++ |+ ++.+|+ |-.+..+||+..=+ ..++.+.++
T Consensus 27 ~~~~~sredLke~F~~-~G----~V~~Vd-----~~~g~~tgfVrf~~~~~~A~~av~ 74 (121)
T 1owx_A 27 LDDQTCREDLHILFSN-HG----EIKWID-----FVRGAKEGIILFKEKAKEALGKAK 74 (121)
T ss_dssp CCSSCCHHHHHHHTCS-SC----CEEEEE-----CCTTCSEEEEEESSCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHh-cC----CEEEEE-----EecCCCEEEEEECCChHHHHHHHH
Confidence 344 889999998886 65 344433 22344579999877 345544443
No 140
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.04 E-value=60 Score=18.90 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. +|- ..-| .+......+.+.|||.| |.+.+.+.+
T Consensus 18 ~~~t~~~l~~~F~~-~G~----i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 65 (99)
T 1whw_A 18 YTSSEEDLEKLFSA-YGP----LSEL-HYPIDSLTKKPKGFAFVTFMFPEHAVK 65 (99)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEE-ECCCCTTTCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----EeEE-EEEecCCCCCcCeEEEEEECCHHHHHH
Confidence 45678888877764 451 1111 22222234566777766 777776654
No 141
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.91 E-value=46 Score=20.23 Aligned_cols=45 Identities=16% Similarity=0.462 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.+++ +| .=.++.++.+ -| .+.|||.| |++.+.+++
T Consensus 39 ~~~te~~l~~~F~~-~G-~i~~v~i~~~----~~--~~kg~afV~f~~~~~A~~ 84 (109)
T 2err_A 39 FRFRDPDLRQMFGQ-FG-KILDVEIIFN----ER--GSKGFGFVTFENSADADR 84 (109)
T ss_dssp TTCCHHHHHHHGGG-TC-CCSCEEECCB----TT--BCTTEEEEECCCSHHHHH
T ss_pred CcCCHHHHHHHHHh-cC-CEEEEEEEEC----CC--CCceEEEEEECCHHHHHH
Confidence 45678888876654 55 2234433332 12 36677766 666555543
No 142
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.66 E-value=31 Score=21.20 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
-...+.+||++-++.. +..+.++.++.+- .+.+.|||.| |.+.+.+++
T Consensus 24 p~~~t~~~l~~~F~~~-g~v~~~v~i~~d~-----~g~~~G~afV~F~~~~~a~~ 72 (114)
T 2cpy_A 24 PFSITKMDVLQFLEGI-PVDENAVHVLVDN-----NGQGLGQALVQFKNEDDARK 72 (114)
T ss_dssp CTTSCHHHHHHHTTTS-CCCSTTEEECCCT-----TSSCSSCEEEECSSHHHHHH
T ss_pred CCcCCHHHHHHHHHhC-CCcCCeEEEEECC-----CCCcceEEEEEECCHHHHHH
Confidence 3566788888877664 6311344444332 3567777776 667666654
No 143
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=26.63 E-value=80 Score=19.02 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe
Q 034307 34 ANVSKAELKEKLARMYDVRDANA 56 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ 56 (98)
++-+-.+++++|++..++ +++.
T Consensus 41 ~~~TV~~LK~~I~~~~gi-p~~~ 62 (98)
T 4hcn_B 41 SSDTIDNVKSKIQDKEGI-PPDQ 62 (98)
T ss_dssp TTCBHHHHHHHHHHHHCC-CGGG
T ss_pred CCCcHHHHHHHHHHHhCC-ChhH
Confidence 455789999999999997 5543
No 144
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=26.63 E-value=1.1e+02 Score=19.84 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. ||- |.-..+...-..|.+.|||.| |.+.+.+.+
T Consensus 82 ~~~t~~~L~~~F~~-~G~-----i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 129 (165)
T 1rk8_A 82 EEAQEDEIQEKFCD-YGE-----IKNIHLNLDRRTGFSKGYALVEYETHKQALA 129 (165)
T ss_dssp TTCCHHHHHHHHGG-GSC-----EEEEEEEECTTTSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHhhc-CCC-----EEEEEEEecCCCCcEeeEEEEEECCHHHHHH
Confidence 35677888776654 551 111223333345678888887 777776654
No 145
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=26.63 E-value=52 Score=19.34 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. +|. -..+-+. .+.|||.| |+|.+.+.+
T Consensus 37 ~~~~~~~l~~~f~~-~G~--i~~~~~~---------~~~g~afV~f~~~~~A~~ 78 (101)
T 2la4_A 37 HFATEADLIPLFQN-FGF--ILDFKHY---------PEKGCCFIKYDTHEQAAV 78 (101)
T ss_dssp TTCCHHHHHHHHHT-TSC--CSEEEEE---------TTTTEEEEECSSHHHHHH
T ss_pred cccCHHHHHHHHHh-CCC--EEEEEEe---------cCCCEEEEEECCHHHHHH
Confidence 45677888876654 451 2222222 24567766 667665543
No 146
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=26.35 E-value=23 Score=19.47 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCe
Q 034307 32 GRANVSKAELKEKLARMYDVRDANA 56 (98)
Q Consensus 32 ~~~TPsr~ei~~klA~~~~v~~~~~ 56 (98)
|...|+... ..+||+.|++ +++.
T Consensus 49 g~~~~~~~~-l~~l~~~l~~-~~~~ 71 (74)
T 1y7y_A 49 GQRNVSLVN-ILKLATALDI-EPRE 71 (74)
T ss_dssp TCSCCBHHH-HHHHHHHTTS-CGGG
T ss_pred CCCCCCHHH-HHHHHHHhCc-CHHH
Confidence 455666554 5789999997 7654
No 147
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=26.07 E-value=20 Score=21.50 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=13.9
Q ss_pred CCCEEEEEEEE-eCCHHHHHh
Q 034307 67 GGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 67 G~~~s~g~a~I-Yds~e~~kk 86 (98)
..|.+.|||.| |.+.+.+.+
T Consensus 56 ~~g~~~g~afV~f~~~~~a~~ 76 (100)
T 2j76_E 56 NPERLKGFGYAEFEDLDSLLS 76 (100)
T ss_dssp TTCCCCSCEEEEECCHHHHHH
T ss_pred cCCccCeEEEEEECCHHHHHH
Confidence 35677788876 777777655
No 148
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.96 E-value=1e+02 Score=18.27 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..||++-++. ++. -.+.|. |... -.+++.|||.| |.+.+.+++
T Consensus 25 ~~~te~~l~~~F~~-~G~-v~~~v~---i~~~-~~g~~~G~afV~F~~~~~a~~ 72 (104)
T 1wg5_A 25 FGCSKEEIVQFFSG-LEI-VPNGMT---LPVD-FQGRSTGEAFVQFASQEIAEK 72 (104)
T ss_dssp TTCCHHHHHHHTTT-CCE-EEEEEE---CCBC-SSSCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-cceeEE---EEEC-CCCCcceEEEEEECCHHHHHH
Confidence 45667777766543 441 112121 2122 24567777776 566665543
No 149
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=25.87 E-value=73 Score=19.83 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCCCH-----HHHHHHHHhHcCCCCCCeEEEec
Q 034307 25 VIDVLHPGRANVSK-----AELKEKLARMYDVRDANAIFVFK 61 (98)
Q Consensus 25 ~~~v~h~~~~TPsr-----~ei~~klA~~~~v~~~~~ivV~~ 61 (98)
.++|.-.|+-+|.. ++|-+.|.+.+++ +++.++|.=
T Consensus 58 ~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi-~~~riyI~f 98 (114)
T 3djh_A 58 LCSLHSIGKIGGAQNRSYSKLLCGLLAERLRI-SPDRVYINY 98 (114)
T ss_dssp EEEEEESSCCSHHHHHHHHHHHHHHHHHHHCC-CGGGEEEEE
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHHHHHHhCc-CcceEEEEE
Confidence 44555556666654 4567777888997 888888753
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=25.86 E-value=1e+02 Score=17.90 Aligned_cols=38 Identities=32% Similarity=0.548 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 35 NVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 35 TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
..+..+|++.++. || ....+.+ +.|||.| |++.+.+.+
T Consensus 22 ~~t~~~l~~~F~~-~G--~v~~v~i-----------~~g~afV~f~~~~~A~~ 60 (96)
T 2kvi_A 22 NVSKEDLFRIFSP-YG--HIMQINI-----------KNAFGFIQFDNPQSVRD 60 (96)
T ss_dssp CCCHHHHHHHHTT-TC--CCCEEEE-----------ETTEEEEEESCHHHHHH
T ss_pred cCCHHHHHHHHHh-cC--CEEEEEE-----------eCCEEEEEECCHHHHHH
Confidence 6778888877765 55 2333444 2456666 677766654
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=25.85 E-value=1.2e+02 Score=19.02 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe-----EEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKLARMYDVRDANA-----IFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~-----ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
.+.+..+|++.++. +|. =... +-+.-..| +.+.|||.| |.+.+.+.
T Consensus 55 ~~~te~~L~~~F~~-~G~-i~~~~~~~~~di~~~~~----g~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 55 KHVQEKDLKYIFGR-YVD-FSSETQRIMFDIRLMKE----GRMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp TTCCHHHHHHHHGG-GCC-TTCHHHHHHCEEEEEEE----TTTEEEEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-cccccccceeeEEeccC----CCcccEEEEEeCCHHHHH
Confidence 45678889887765 551 2332 01111223 445666665 66666554
No 152
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.32 E-value=52 Score=19.44 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.+++ ++. ..-| .+...-..+.+.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~F~~-~G~----i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 72 (105)
T 1x5u_A 25 EKVSEPLLWELFLQ-AGP----VVNT-HMPKDRVTGQHQGYGFVEFLSEEDADY 72 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEE-ECCBCSSSCSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----eEEE-EEEecCCCCcCCcEEEEEECCHHHHHH
Confidence 45678888777765 451 1122 22233334567777766 677766654
No 153
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=25.21 E-value=1.3e+02 Score=18.78 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
...+..+|++.++ .+|. ...+. +...-..|.+.|||.| |+|.+.+.
T Consensus 104 ~~~t~~~l~~~f~-~~G~--v~~v~---i~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 104 NYLNDDQVKELLT-SFGP--LKAFN---LVKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp TTCCHHHHHHHHH-TTSC--EEEEE---EEECTTTCSEEEEEEEEESSTTHHH
T ss_pred CcCCHHHHHHHHH-hcCC--ceEEE---EEecCCCCCcceEEEEEeCCHHHHH
Confidence 3557888888776 4561 12222 2222235667777766 56655554
No 154
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=25.11 E-value=45 Score=20.41 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHhHcCC
Q 034307 34 ANVSKAELKEKLARMYDV 51 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v 51 (98)
..|+..||+++|++..++
T Consensus 68 ~~~~~~el~~~L~el~gL 85 (92)
T 2lqo_A 68 TNPSADEVKAKLVKIAGL 85 (92)
T ss_dssp ESCCHHHHHHHHHHHHCC
T ss_pred eCCCHHHHHHHHHHhcCC
Confidence 358999999999999886
No 155
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=25.02 E-value=43 Score=23.83 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHcCCCCCCeEEEe
Q 034307 38 KAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 38 r~ei~~klA~~~~v~~~~~ivV~ 60 (98)
-.+++++||+.+++ +++.|++.
T Consensus 67 ~~~lr~~la~~~~~-~~~~v~~~ 88 (365)
T 3get_A 67 MIELKSTLAQKYKV-QNENIIIG 88 (365)
T ss_dssp CHHHHHHHHHHHTC-CGGGEEEE
T ss_pred hHHHHHHHHHHhCC-CcceEEEC
Confidence 37999999999996 77777664
No 156
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=24.99 E-value=59 Score=23.89 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 034307 31 PGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (98)
Q Consensus 31 ~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~ 61 (98)
.+.+++.+.++.++||+.+++ +++.|++.+
T Consensus 80 ~~~~~~~~~~l~~~la~~~~~-~~~~v~~~~ 109 (433)
T 1zod_A 80 SEMLSRPVVDLATRLANITPP-GLDRALLLS 109 (433)
T ss_dssp TTCCCHHHHHHHHHHHHHSCT-TCCEEEEES
T ss_pred cccCCHHHHHHHHHHHHhCCC-CcCEEEEeC
Confidence 345566789999999999995 777777653
No 157
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=24.92 E-value=97 Score=17.24 Aligned_cols=47 Identities=19% Similarity=0.408 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.+++ +| ....+ .+......+.+.|||.| |.+.+.+.+
T Consensus 17 ~~~~~~~l~~~f~~-~G--~i~~v---~i~~~~~~~~~~g~afV~f~~~~~a~~ 64 (85)
T 3mdf_A 17 EEVDDKVLHAAFIP-FG--DITDI---QIPLDYETEKHRGFAFVEFELAEDAAA 64 (85)
T ss_dssp TTCCHHHHHHHHGG-GS--CEEEE---ECCEETTTTEECSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHhc-cC--CEEEE---EEEECCCCCccccEEEEEECCHHHHHH
Confidence 45677888877654 55 11111 22233345677888875 777776654
No 158
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.86 E-value=75 Score=18.82 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. +|. =.++. +...--.+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~v~----i~~~~~~g~~~g~afV~f~~~~~A~~ 72 (111)
T 1x4h_A 25 FDSEEEALGEVLQQ-FGD-LKYVR----VVLHPDTEHSKGCAFAQFMTQEAAQK 72 (111)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEE----CCBCSSSCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEE----EEecCCCCCCccEEEEEECCHHHHHH
Confidence 45678888887764 551 11222 2222234556777766 666666543
No 159
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=24.84 E-value=64 Score=20.70 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhcCcceeeecc
Q 034307 36 VSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96 (98)
Q Consensus 36 Psr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~kk~Epk~~l~Rn 96 (98)
-++.++-..+++.+|+...++++|.+=.+-.-+.+..|..-++...+.++. .+.|++.-|
T Consensus 141 k~k~~~~~~~~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~~~~~~~~l~~-~ad~v~~~~ 200 (217)
T 3m1y_A 141 HSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLKQ-HATHCINEP 200 (217)
T ss_dssp THHHHHHHHHHHHHTCCSTTEEEEECSGGGHHHHTTCSEEEEESCCHHHHT-TCSEEECSS
T ss_pred CChHHHHHHHHHHcCCCHhHEEEEeCCHHHHHHHHHCCCeEEECccHHHHH-hcceeeccc
Confidence 346788889999999844555666543333333333444445566666653 577776543
No 160
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.80 E-value=1.2e+02 Score=18.20 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe
Q 034307 34 ANVSKAELKEKLARMYDVRDANA 56 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ 56 (98)
++-+-.+++++|+...|+ +++.
T Consensus 27 ~~~TV~~lK~ki~~~~gi-p~~~ 48 (95)
T 1v6e_A 27 RSLTIAEFKCKLELVVGS-PASC 48 (95)
T ss_dssp TTSBHHHHHHHHHHHTCS-CTTT
T ss_pred ccCHHHHHHHHHHHHHCC-CHHH
Confidence 455679999999999997 5543
No 161
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=24.47 E-value=45 Score=17.76 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=18.3
Q ss_pred EEEcCCCCCCC-HH----HHHHHHHhHcCCCCCCeEEE
Q 034307 27 DVLHPGRANVS-KA----ELKEKLARMYDVRDANAIFV 59 (98)
Q Consensus 27 ~v~h~~~~TPs-r~----ei~~klA~~~~v~~~~~ivV 59 (98)
.|...++.|+. +. +|-+.+++.+|+ +++.++|
T Consensus 7 ~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~-p~~~v~v 43 (63)
T 2x4k_A 7 NVKLLEGRSDEQLKNLVSEVTDAVEKTTGA-NRQAIHV 43 (63)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHCC-CGGGCEE
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCc-CcccEEE
Confidence 34444455665 33 345566677895 7666555
No 162
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=24.45 E-value=98 Score=18.46 Aligned_cols=36 Identities=19% Similarity=0.504 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 36 VSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 36 Psr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
.+..||++.+++ +| ....|.+ +.|||.| |.+.+.+.
T Consensus 40 ~t~~~l~~~F~~-~G--~v~~v~i-----------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 40 VKKSDVETIFSK-YG--RVAGCSV-----------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCHHHHHHHHGG-GS--CCSEEEE-----------ETTEEEEECSSSHHHH
T ss_pred CCHHHHHHHHHh-CC--CeEEEEE-----------eCCEEEEEECCHHHHH
Confidence 678888887765 66 2344444 4567766 55555544
No 163
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.38 E-value=44 Score=19.75 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
...+.++|++.++. +|. ..-| .+...-..+.+.|||.| |.+.+.+.
T Consensus 23 ~~~t~~~l~~~f~~-~G~----i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~ 69 (103)
T 2dnm_A 23 YRTSPDSLRRVFEK-YGR----VGDV-YIPREPHTKAPRGFAFVRFHDRRDAQ 69 (103)
T ss_dssp TTCCHHHHHHHHTT-TSC----EEEE-ECCBCSSSCSBCSCEEEEESSSSHHH
T ss_pred CCCCHHHHHHHHHh-cCC----EEEE-EEEeCCCCCCCCeEEEEEECCHHHHH
Confidence 45678888877654 451 1111 22222233556667766 56655544
No 164
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.23 E-value=28 Score=21.06 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCC-------CeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDA-------NAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~-------~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.+++.=.+ .. ++-++ ..-..+.+.|||.| |.+.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~~G~i-~~~~~~~~~~v~i~----~~~~~g~~~g~afV~f~~~~~A~~ 80 (113)
T 2cpe_A 25 DSVTLDDLADFFKQCGVV-KMNKRTGQPMIHIY----LDKETGKPKGDATVSYEDPPTAKA 80 (113)
T ss_dssp TTCCHHHHHHHHTTTSCB-CBCSSSCCBSEECC----BCTTTCSBCSEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCE-eEccccCccCEEEE----EeCCCCCeeeEEEEEECCHHHHHH
Confidence 466788888776654332 10 22222 22234566777776 777776654
No 165
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=24.22 E-value=63 Score=19.94 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.++|++.++. +|. ..-| .+......+.+.|||.| |.+.+.+++
T Consensus 73 ~~~~~~~l~~~f~~-~G~----i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 120 (140)
T 2ku7_A 73 EEVDDKVLHAAFIP-FGD----ITDI-QIPLDYETEKHRGFAFVEFELAEDAAA 120 (140)
T ss_dssp TTCCHHHHHHHHGG-GSC----EEEE-ECCCCTTTCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----EEEE-EEeecCCCCCcCcEEEEEECCHHHHHH
Confidence 45677888877765 551 1111 12222234567777776 777776654
No 166
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=24.14 E-value=84 Score=19.09 Aligned_cols=39 Identities=26% Similarity=0.571 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
.+.+..||++.++. +| ....+.+. .|||.| |.+.+.+.+
T Consensus 41 ~~~t~~~L~~~F~~-~G--~i~~v~i~-----------kg~afV~f~~~~~A~~ 80 (108)
T 2jvo_A 41 LDVQESELNEIFGP-FG--PMKEVKIL-----------NGFAFVEFEEAESAAK 80 (108)
T ss_dssp TTCCHHHHHHHHTT-TS--CCCEEEEE-----------TTEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC--CEEEEEEE-----------CCEEEEEECCHHHHHH
Confidence 45678888877755 55 12333332 456666 666665543
No 167
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=24.11 E-value=26 Score=21.56 Aligned_cols=46 Identities=22% Similarity=0.503 Sum_probs=33.5
Q ss_pred cceeEE-EEEEEcCCCCCCCH-HHHHHHHHhHcCCCCCCeEEEeceeecCCCCE
Q 034307 19 LSRKQF-VIDVLHPGRANVSK-AELKEKLARMYDVRDANAIFVFKFRTHFGGGK 70 (98)
Q Consensus 19 L~RkEi-~~~v~h~~~~TPsr-~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~ 70 (98)
+.|-|- +|+ |.-||+. .+++.+|.+..+ .+.|.|.++.+. .+..-.
T Consensus 25 g~rvQ~SVFe----g~lt~~~~~~L~~~l~~~id-~~~Dsv~iy~l~-~~~~~~ 72 (85)
T 2i0x_A 25 LNWVQNSVFE----GEVTLAEFERIKEGLKKIID-ENSDSVIIYKLR-SMPPRE 72 (85)
T ss_dssp SEEEETTEEE----EECCHHHHHHHHHHHHHSSC-TTTCEEEEEEES-SCCCCC
T ss_pred CcccceeEEE----EECCHHHHHHHHHHHHHhcC-CCCCEEEEEECC-CcceEE
Confidence 456666 333 5667766 789999999999 689999999988 444433
No 168
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.09 E-value=45 Score=19.70 Aligned_cols=46 Identities=17% Similarity=0.472 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
....+..+|++.+++ ++. =.++-++. .-+. +.|||.| |.+.+.+.+
T Consensus 24 p~~~t~~~l~~~f~~-~G~-v~~v~i~~----~~~~--~~g~afV~f~~~~~a~~ 70 (103)
T 2cq3_A 24 PFRFRDPDLRQMFGQ-FGK-ILDVEIIF----NERG--SKGFGFVTFENSADADR 70 (103)
T ss_dssp CTTCCHHHHHHHGGG-TSC-EEEEEEEC----CTTT--TCCEEEEEESCHHHHHH
T ss_pred CCCCCHHHHHHHHHh-cCC-eEEEEEEe----cCCC--CcEEEEEEECCHHHHHH
Confidence 346778888877654 551 12222222 1222 6677766 777776654
No 169
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=24.09 E-value=38 Score=24.48 Aligned_cols=29 Identities=3% Similarity=0.112 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEece
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKF 62 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~ 62 (98)
+=.|-|.++++.||+.+++ +++.|-|.-=
T Consensus 132 Ki~p~~~~m~~nia~~L~i-~~~~VnVKAt 160 (187)
T 3b6n_A 132 KISPIREEIVRNISSALGI-SESQVSLKGK 160 (187)
T ss_dssp CSHHHHHHHHHHHHHHHTC-CGGGEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCC-CcceEEEEEe
Confidence 6688999999999999996 9999988653
No 170
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=23.95 E-value=21 Score=22.96 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..||++.++. +|. =.++.++.+- -.+.+.|||.| |.+.+.+.+
T Consensus 57 ~~~te~~L~~~F~~-~G~-i~~v~i~~~~----~~g~~~G~afV~F~~~~~A~~ 104 (135)
T 2lea_A 57 YRTSPDTLRRVFEK-YGR-VGDVYIPRDR----YTKESRGFAFVRFHDKRDAED 104 (135)
T ss_dssp SSCHHHHHHHHHGG-GSC-CSEEECCCCS----SSSSCCSCCEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEecC----CCCccceEEEEEECCHHHHHH
Confidence 35677888877765 551 2233222222 23556777776 777776654
No 171
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=23.92 E-value=1.3e+02 Score=18.23 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++-++. +|- =.++.++ ..-..+.+.|||.| |.+.+.+.+
T Consensus 46 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 93 (124)
T 2jwn_A 46 YGSTAQDLEAHFSS-CGS-INRITIL----CDKFSGHPKGYAYIEFAERNSVDA 93 (124)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEE----EECTTSSCEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEE----ecCCCCCcccEEEEEECCHHHHHH
Confidence 34567888877764 551 1222222 22234566777765 677776654
No 172
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=23.63 E-value=74 Score=18.08 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe
Q 034307 34 ANVSKAELKEKLARMYDVRDANA 56 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ 56 (98)
++-+-.+++++|++..++ +++.
T Consensus 22 ~~~tV~~lK~~i~~~~~i-p~~~ 43 (85)
T 3n3k_B 22 PSDTIENVKAKIQDKEGI-PPDQ 43 (85)
T ss_dssp TTCBHHHHHHHHHHHHCC-CGGG
T ss_pred CCCcHHHHHHHHHHHHCC-CHHH
Confidence 566789999999999997 5554
No 173
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=23.56 E-value=60 Score=22.64 Aligned_cols=27 Identities=4% Similarity=0.089 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
+..+-+.++++.+|+.+++ +++.|++.
T Consensus 46 g~~~~~~~~~~~l~~~~g~-~~~~v~~~ 72 (359)
T 1svv_A 46 GQDSHCAKAARLIGELLER-PDADVHFI 72 (359)
T ss_dssp TCSHHHHHHHHHHHHHHTC-TTSEEEEE
T ss_pred cccHHHHHHHHHHHHHhCC-CCccEEEe
Confidence 3456789999999999995 88777664
No 174
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=23.47 E-value=1.3e+02 Score=18.11 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=24.7
Q ss_pred ceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 20 SRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 20 ~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
.-+.+.+.|. ++-+-.++++++++..++....+.++|
T Consensus 30 ~g~~~~l~v~----~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 30 DSSEIHFKVK----MTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp TCCEEEEEEE----TTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEEEC----CCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 3456667654 455668999999999997333344444
No 175
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=23.45 E-value=1.1e+02 Score=17.26 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=22.0
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeE
Q 034307 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAI 57 (98)
Q Consensus 22 kEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~i 57 (98)
+.+.++|. ++-+-.+++++|++..++ +++..
T Consensus 14 ~~~~~~v~----~~~tV~~lK~~i~~~~~i-~~~~q 44 (85)
T 3mtn_B 14 KTITLEVE----PSDTIENVKAKIQDKEGI-PPDQQ 44 (85)
T ss_dssp CEEEEEEC----TTCBHHHHHHHHHHHHCC-CGGGC
T ss_pred CEEEEEEC----CCCCHHHHHHHHHHHHCc-ChHHE
Confidence 44555542 456789999999999997 55443
No 176
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=23.29 E-value=1.4e+02 Score=18.46 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=29.7
Q ss_pred cEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCe
Q 034307 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANA 56 (98)
Q Consensus 5 ~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ 56 (98)
.|++.|.. ..++++.+.++| .++-+-.++|++|....|+ +++.
T Consensus 14 ~v~l~It~----s~~~~~~~e~~v----~~~~TV~~LK~kIe~~~Gi-p~~~ 56 (97)
T 2kj6_A 14 SVHLHITH----ANLKSFSADARF----SPQMSVEAVKEKLWKKCGT-SVNS 56 (97)
T ss_dssp CEEEEEEE----TTSSCCCEEEEE----CTTCCHHHHHHHHHHHHCC-CTTS
T ss_pred eEEEEEEE----CCCCceEEEEEe----CCCChHHHHHHHHHHHHCc-CHHH
Confidence 57777765 445444444442 3677789999999999997 5554
No 177
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=23.00 E-value=31 Score=21.30 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCCCCCH-HHHHHHHHhHcCCCCCCeEEEeceee
Q 034307 32 GRANVSK-AELKEKLARMYDVRDANAIFVFKFRT 64 (98)
Q Consensus 32 ~~~TPsr-~ei~~klA~~~~v~~~~~ivV~~~~t 64 (98)
|.-||+. .+++.+|.+..+ .+.|.|.++.+..
T Consensus 39 ~~lt~~~~~~L~~~L~~~id-~~~Dsv~iy~l~~ 71 (90)
T 1zpw_X 39 CYLDERLLEDLRRRARRLLD-LGQDALRIYPVAG 71 (90)
T ss_dssp EEECHHHHHHHHHHHHHHCC-TTTCEEEEEECCS
T ss_pred EEcCHHHHHHHHHHHHHhhC-CCCCEEEEEEeCC
Confidence 4556555 899999999999 5889999999865
No 178
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.92 E-value=30 Score=20.43 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++.+++ ++ .|.+ +.. -.+.+.|||.| |++.+.+++
T Consensus 25 ~~~t~~~l~~~F~~-~g-----~v~~--~~~--~~g~~~g~afV~f~~~~~A~~ 68 (101)
T 2fc9_A 25 YSATEETLQEVFEK-AT-----FIKV--PQN--QNGKSKGYAFIEFASFEDAKE 68 (101)
T ss_dssp TTCCHHHHHHHCSS-CS-----EEEC--CBC--SSSCBCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CC-----EEEE--EEC--CCCCEeeEEEEEECCHHHHHH
Confidence 45677787776554 33 1211 111 23556777766 777776654
No 179
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=22.83 E-value=40 Score=23.94 Aligned_cols=26 Identities=12% Similarity=0.350 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
+.+.-.+++++||+.+++ +++.|++.
T Consensus 65 ~~~~~~~lr~~la~~~~~-~~~~v~~~ 90 (363)
T 3ffh_A 65 PDGWASSLRKEVADFYQL-EEEELIFT 90 (363)
T ss_dssp ----CHHHHHHHHHHHTC-CGGGEEEE
T ss_pred CCcchHHHHHHHHHHhCC-ChhhEEEe
Confidence 344568999999999995 77777664
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=22.81 E-value=56 Score=20.54 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 35 NVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 35 TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
..+.++|++.+++ ||- =.+ |.+. .+.|||.| |++.+.+.+
T Consensus 48 ~~te~~L~~~F~~-~G~-I~~-v~i~---------~~kg~aFV~f~~~~~A~~ 88 (121)
T 2bz2_A 48 DMTPTLLRGAFSP-FGN-IID-LSMD---------PPRNCAFVTYEKMESADQ 88 (121)
T ss_dssp SCCHHHHHHHHST-TCC-CSC-EEEE---------TTTTEEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHc-cCC-EEE-EEEe---------CCCCEEEEEECCHHHHHH
Confidence 5677888776654 551 233 3331 34566666 777765543
No 181
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=22.80 E-value=63 Score=20.01 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeEEE
Q 034307 32 GRANVSKAELKEKLARMYDVRDANAIFV 59 (98)
Q Consensus 32 ~~~TPsr~ei~~klA~~~~v~~~~~ivV 59 (98)
|...|+. +...+||..||+ +++.++.
T Consensus 59 G~~~ps~-~~l~~ia~~l~v-~~~~l~~ 84 (111)
T 3mlf_A 59 DSTNIKD-SLLSKYMSAFNV-KYDDIFL 84 (111)
T ss_dssp CCTTCCH-HHHHHHHHHHTC-CGGGEEC
T ss_pred CCCCCCH-HHHHHHHHHhCc-CHHHHhC
Confidence 4556764 566899999997 8776653
No 182
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=22.76 E-value=25 Score=19.55 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=16.9
Q ss_pred cCCCCCCCHHHHHHHHHhHcCCCCCC
Q 034307 30 HPGRANVSKAELKEKLARMYDVRDAN 55 (98)
Q Consensus 30 h~~~~TPsr~ei~~klA~~~~v~~~~ 55 (98)
|...+-|+..+. +.||+.+|+ ++.
T Consensus 20 ~~~~~yp~~~~r-~~La~~~gl-~~~ 43 (60)
T 1k61_A 20 NIENPYLDTKGL-ENLMKNTSL-SRI 43 (60)
T ss_dssp TTTSCCCCHHHH-HHHHHHHCC-CHH
T ss_pred cCCCCCcCHHHH-HHHHHHHCc-CHH
Confidence 334678888775 569999996 543
No 183
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.72 E-value=1.9e+02 Score=19.92 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=39.4
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE---eCCHHHHHh
Q 034307 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI---YDSVESAKK 86 (98)
Q Consensus 22 kEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I---Yds~e~~kk 86 (98)
.+++|.|.- .-++.||++.+-++|+| ++.-|..+... +|.=.+|+.. ||..|.+.+
T Consensus 88 N~~vF~Vd~----kAnK~qIK~AVEklf~V---kV~kVNTl~~p--~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 88 NTMVFYVHN----RSTKPQIKSAFEKLYNV---KVRSVNTLNTI--TGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SEEEEEECT----TCCHHHHHHHHHHHHCC---CEEEEEEEECT--TSCEEEEEEECSSSCHHHHHHH
T ss_pred CEEEEEEcC----CCCHHHHHHHHHHHhCC---ceeEEEeeEcC--CCcEEEEEEcCCCCcHHHHHHh
Confidence 578888643 34799999999999997 66666666664 3455566666 555665554
No 184
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.66 E-value=1.3e+02 Score=17.85 Aligned_cols=46 Identities=28% Similarity=0.347 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++ .++. =.++.++. .. .+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~~~~~l~~~f~-~~G~-i~~~~i~~---~~--~g~~~g~afV~f~~~~~a~~ 71 (114)
T 2do0_A 25 YKVGWKKLKEVFS-MAGV-VVRADILE---DK--DGKSRGIGTVTFEQSIEAVQ 71 (114)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEEE---CT--TCSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEE---CC--CCCeeeEEEEEECCHHHHHH
Confidence 4567888887665 4551 12222222 22 2567778766 677665543
No 185
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=22.52 E-value=52 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 35 NVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 35 TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
++--.++++.||+.+++ +++.|++.
T Consensus 69 ~~g~~~lr~~ia~~~~~-~~~~i~~t 93 (423)
T 3ez1_A 69 VAGLPSARALFAGYLDV-KAENVLVW 93 (423)
T ss_dssp TTCCHHHHHHHHHHTTS-CGGGEEEC
T ss_pred CCChHHHHHHHHHHhCC-ChhhEEEe
Confidence 34468999999999996 88877764
No 186
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=22.35 E-value=85 Score=20.48 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=32.9
Q ss_pred eeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceee
Q 034307 21 RKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64 (98)
Q Consensus 21 RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t 64 (98)
=|.++++|+-| --|+--|+..+||+.-|+ +.=+|.|..+..
T Consensus 6 iRRlVLDVlKP--h~P~ivdlA~~l~~~~gV-~gVnItV~EvD~ 46 (100)
T 3bpd_A 6 LRRLVLDVLKP--HEPKTIVFALKLSELENV-DGVNIHLSEIDQ 46 (100)
T ss_dssp EEEEEEEEEEE--SCSCHHHHHHHHHTSTTE-EEEEEEEEEECS
T ss_pred ceEEEEEecCC--CCCCHHHHHHHHHhCCCc-ceEEEEEEEeec
Confidence 36789999976 789999999999999997 666666665543
No 187
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.24 E-value=29 Score=18.51 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeEE
Q 034307 32 GRANVSKAELKEKLARMYDVRDANAIF 58 (98)
Q Consensus 32 ~~~TPsr~ei~~klA~~~~v~~~~~iv 58 (98)
|...|+. +...+||+.+++ +++.++
T Consensus 37 g~~~~~~-~~l~~i~~~l~~-~~~~l~ 61 (66)
T 2xi8_A 37 NKYNPSL-QLALKIAYYLNT-PLEDIF 61 (66)
T ss_dssp TSCCCCH-HHHHHHHHHTTS-CHHHHE
T ss_pred CCCCCCH-HHHHHHHHHHCc-CHHHHh
Confidence 4556655 455789999997 766544
No 188
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=22.11 E-value=26 Score=22.32 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.3
Q ss_pred cCCCCCCCHHHHHHHHHhHc
Q 034307 30 HPGRANVSKAELKEKLARMY 49 (98)
Q Consensus 30 h~~~~TPsr~ei~~klA~~~ 49 (98)
|-|+.+||++||-.-|....
T Consensus 15 ~cgk~spskKeI~a~LslL~ 34 (87)
T 1a6s_A 15 YCGKTSPSKKEIGAMLSLLQ 34 (87)
T ss_dssp HHTTTSSCSSHHHHHHHTGG
T ss_pred HcCCCCCcHHHHHHHHHHHH
Confidence 45889999999998887653
No 189
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=22.07 E-value=34 Score=24.22 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
+.|.-.+++++||+.+++ +++.|++.
T Consensus 49 ~~~~~~~l~~~la~~~~~-~~~~i~~~ 74 (354)
T 3ly1_A 49 AKNEILMLGNKLAAHHQV-EAPSILLT 74 (354)
T ss_dssp CHHHHHHHHHHHHHHTTS-CGGGEEEE
T ss_pred CCCchHHHHHHHHHHhCC-ChHHEEEe
Confidence 344568999999999996 77777764
No 190
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=21.99 E-value=75 Score=22.72 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=24.6
Q ss_pred EEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeE
Q 034307 23 QFVIDVLHPGRANVSKAELKEKLARMYDVRDANAI 57 (98)
Q Consensus 23 Ei~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~i 57 (98)
.+.+. +|.=..||+..|+.+.+.++... ..|.+
T Consensus 127 kvI~S-~Hdf~~tp~~~el~~~~~~~~~~-gaDiv 159 (238)
T 1sfl_A 127 EVIIS-HHNFESTPPLDELQFIFFKMQKF-NPEYV 159 (238)
T ss_dssp EEEEE-EEESSCCCCHHHHHHHHHHHHTT-CCSEE
T ss_pred EEEEE-ecCCCCCcCHHHHHHHHHHHHHc-CCCEE
Confidence 34444 56558999999999999999763 55644
No 191
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=21.75 E-value=1.2e+02 Score=17.08 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=21.8
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCe
Q 034307 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANA 56 (98)
Q Consensus 22 kEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ 56 (98)
+.+.++|. ++-+-.++++++++..++ +++.
T Consensus 14 ~~~~~~v~----~~~tv~~lk~~i~~~~gi-~~~~ 43 (79)
T 2uyz_B 14 SEIHFKVK----MTTHLKKLKESYCQRQGV-PMNS 43 (79)
T ss_dssp CEEEEEEE----TTSCTHHHHHHHHHHHTC-CGGG
T ss_pred CEEEEEEC----CCChHHHHHHHHHHHHCC-Cccc
Confidence 45666653 455678999999999997 5443
No 192
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=21.75 E-value=1e+02 Score=21.85 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
+.|.-.+++++||+.+++.+++.|++.
T Consensus 65 ~~~~~~~l~~~la~~~g~~~~~~i~~~ 91 (367)
T 3euc_A 65 PVPSSEALRAKLKEVMQVPAGMEVLLG 91 (367)
T ss_dssp CCCCHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEc
Confidence 446679999999999994255666654
No 193
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=21.75 E-value=1.6e+02 Score=18.51 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=33.6
Q ss_pred HHHHHHHHhH-cCCCCCCe----EEEeceeecCCCCEEEEEEEEeCCHH
Q 034307 39 AELKEKLARM-YDVRDANA----IFVFKFRTHFGGGKSTGFGLIYDSVE 82 (98)
Q Consensus 39 ~ei~~klA~~-~~v~~~~~----ivV~~~~t~fG~~~s~g~a~IYds~e 82 (98)
++|++.||.+ ..+.||.+ |-|.+.+-.-....++.|.-++.+.+
T Consensus 13 ~~i~~~ls~i~~eikDprl~~~~vtVt~V~vs~Dl~~AkVyvs~~g~~~ 61 (106)
T 2kzf_A 13 SEIQKLLMEALQQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPE 61 (106)
T ss_dssp HHHHHHHHHHHHTTCCSSCCGGGCCEEEEEECTTSCEEEEEECCSSCHH
T ss_pred HHHHHHHHHHHHhccCccccCCceEEEEEEECCCCCEEEEEEEeCCChh
Confidence 4667777664 34557755 89999999999999999999997543
No 194
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=21.71 E-value=66 Score=19.67 Aligned_cols=47 Identities=17% Similarity=0.400 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
.+.+.++|++.+++ +|. +.-| .+...-..+.+.|||.| |.+.+.+.+
T Consensus 32 ~~~t~~~l~~~F~~-~G~----i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 79 (126)
T 3ex7_B 32 EEATEEDIHDKFAE-YGE----IKNI-HLNLDRRTGYLKGYTLVEYETYKEAQA 79 (126)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEE-ECCBCTTTSSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----eEEE-EEEecCCCCccceEEEEEECCHHHHHH
Confidence 45678888877764 551 1111 22222235566677766 777776654
No 195
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.70 E-value=86 Score=17.56 Aligned_cols=41 Identities=10% Similarity=0.255 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
.+.+..+|++.+++ +|. =.+..++. +.|||.| |.+.+.+.+
T Consensus 22 ~~~t~~~l~~~f~~-~G~-i~~~~~~~----------~kg~afV~f~~~~~A~~ 63 (85)
T 2ytc_A 22 DTITETDLRNHFYQ-FGE-IRTITVVQ----------RQQCAFIQFATRQAAEV 63 (85)
T ss_dssp TTSCHHHHHHHHHT-TSC-EEEEEEEG----------GGTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC-EeEEEEEC----------CCCEEEEEECCHHHHHH
Confidence 45778888877654 551 12222221 2466666 677666544
No 196
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=21.63 E-value=28 Score=22.34 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=24.4
Q ss_pred CcceeEEEEEEEcCCCCCCCHHHHHHHHHhH
Q 034307 18 LLSRKQFVIDVLHPGRANVSKAELKEKLARM 48 (98)
Q Consensus 18 LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~ 48 (98)
+|..+.+.++.....+..|+++|+++.+++.
T Consensus 22 ~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~ 52 (120)
T 3fz4_A 22 ELDDLAWDYDAIDIKKNPPAASLIRNWLENS 52 (120)
T ss_dssp HHHHHTCCEEEEETTTSCCCHHHHHHHHHHS
T ss_pred HHHHcCCceEEEEeccCchhHHHHHHHHHHc
Confidence 5666777888777778889999999887754
No 197
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=21.60 E-value=81 Score=20.51 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCCCH-----HHHHHHHHhHcCCCCCCeEEEe
Q 034307 25 VIDVLHPGRANVSK-----AELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 25 ~~~v~h~~~~TPsr-----~ei~~klA~~~~v~~~~~ivV~ 60 (98)
.++|.-.|+.||.. ++|-+.|++.+++ +++.|+|.
T Consensus 80 ~v~v~sig~~~~e~n~~~s~~i~~~l~~~LgI-~~~rvyI~ 119 (133)
T 3fwt_A 80 YVRVESWGEYAPSKPKMMTPRIAAAITKECGI-PAERIYVF 119 (133)
T ss_dssp EEEEEEEECCCTHHHHHHHHHHHHHHHHHHCC-CGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCc-ChhhEEEE
Confidence 34444445667764 4567777788998 77877764
No 198
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=21.41 E-value=1.1e+02 Score=19.98 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCCCCH-----HHHHHHHHhHcCCCCCCeEEEe
Q 034307 24 FVIDVLHPGRANVSK-----AELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 24 i~~~v~h~~~~TPsr-----~ei~~klA~~~~v~~~~~ivV~ 60 (98)
..++|.-.|+-||.. +.|-+.|++.+|+ +++.|+|.
T Consensus 79 a~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi-~~~riyI~ 119 (135)
T 3t5s_A 79 CFVDFYCIGVISQAKNPSISAAITGCLTQHFKV-KPERVYIS 119 (135)
T ss_dssp EEEEEECCC-----CCHHHHHHHHHHHHHHHCC-CGGGEEEE
T ss_pred EEEEEEEEEEEeccCCchHHHHHHHHHHHhccc-CccEEEEE
Confidence 345566566666653 5677788888997 88877774
No 199
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=21.33 E-value=1.2e+02 Score=17.04 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=22.1
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeE
Q 034307 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAI 57 (98)
Q Consensus 22 kEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~i 57 (98)
+.+.++|. ++-+-.+++++|++..++ +++..
T Consensus 15 ~~~~~~v~----~~~tV~~lK~~i~~~~gi-p~~~q 45 (79)
T 3phx_B 15 RSSTYEVR----LTQTVAHLKQQVSGLEGV-QDDLF 45 (79)
T ss_dssp CEEEEEEC----TTSBHHHHHHHHHHHHTC-CGGGE
T ss_pred CEEEEEEC----CcChHHHHHHHHHhhcCC-CHHHE
Confidence 45555542 455789999999999997 65543
No 200
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=21.24 E-value=1.8e+02 Score=18.89 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++.++. ||. =.++.++ ..--.+.+.|||.| |+|.+.+.+
T Consensus 135 ~~~t~~~l~~~f~~-~G~-v~~v~i~----~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 135 QDLSDDDIKSVFEA-FGK-IKSATLA----RDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp TTCCHHHHHHHHTT-SSC-EEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHhc-cCC-eeEEEEE----ecCCCCCcCceEEEEecCHHHHHH
Confidence 34567777776644 551 1222222 22234667777776 667766543
No 201
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.17 E-value=1.4e+02 Score=17.83 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
.+-+-.+++++|++.+|+ ++...-+.
T Consensus 31 ~~~TV~~LK~~i~~~~gi-p~~~q~L~ 56 (97)
T 1wjn_A 31 DSMTVQKVKGLLSRLLKV-PVSELLLS 56 (97)
T ss_dssp TTSBHHHHHHHHHTTTTC-CTTTCEEE
T ss_pred CCCCHHHHHHHHHHHHCC-ChhHeEEE
Confidence 466789999999999997 66554443
No 202
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.03 E-value=88 Score=18.65 Aligned_cols=41 Identities=10% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. +|- =.++.++.+ .|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~----------~g~afV~f~~~~~a~~ 76 (109)
T 1x4g_A 35 SGLTDQLMRQTFSP-FGQ-IMEIRVFPE----------KGYSFVRFSTHESAAH 76 (109)
T ss_dssp SCCCHHHHHHHHHH-HSC-EEEEEEETT----------TTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEeCC----------CCEEEEEECCHHHHHH
Confidence 46688888887764 661 122222222 456665 777766543
No 203
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.01 E-value=2.1e+02 Score=19.57 Aligned_cols=62 Identities=18% Similarity=0.374 Sum_probs=41.5
Q ss_pred ccCcce-eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE---eCCHHHHHh
Q 034307 16 NRLLSR-KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI---YDSVESAKK 86 (98)
Q Consensus 16 N~LL~R-kEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I---Yds~e~~kk 86 (98)
..++.. .+++|.|.- .-++.||++.+-++|+| ++.=|..+... +|.=.+|+.. ||..|.+.+
T Consensus 73 ~~~~E~~N~~vF~Vd~----~AnK~qIK~AVEklf~V---kV~kVNTl~~~--~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 73 MKKVEDGNILVFQVSM----KANKYQIKKAVKELYEV---DVLKVNTLVRP--NGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp HHHHHHHCEEEEEECT----TCCHHHHHHHHHHHHSC---CEEEEEEEECT--TSCEEEEEEECTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEEcC----CCCHHHHHHHHHHHhCC---ceeEEEeeEcC--CCceEEEEEeCCCCcHHHHHHh
Confidence 334443 678888643 34599999999999997 56666666654 3555667766 455555544
No 204
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=20.93 E-value=26 Score=21.28 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHhHcCCC--CCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVR--DANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~--~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+.+||++-++. ++.. -.+..++. ..- |.+.|||.| |.+.+.+++
T Consensus 21 ~~~te~~l~~~F~~-~g~~~~v~~v~i~~---~~~--g~~~G~afV~F~~~~~a~~ 70 (107)
T 2lmi_A 21 WSCTMEDVLNFFSD-CRIRNGENGIHFLL---NRD--GKRRGDALIEMESEQDVQK 70 (107)
T ss_dssp SSCCSHHHHHHTTT-SCBTTTTTTEECCC---CTT--STTCSEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCcCCcceEEEEE---CCC--CCEeeEEEEEECCHHHHHH
Confidence 45677888877765 3310 12333322 122 556677766 566665543
No 205
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=20.93 E-value=1.7e+02 Score=18.52 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=28.1
Q ss_pred CCCccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCe
Q 034307 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANA 56 (98)
Q Consensus 1 m~~~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ 56 (98)
|++ .|+|.|..- .++ ..-++.+. ++-+-.+++++|+...|+ +++.
T Consensus 3 m~~-~v~l~V~~~-~~~--~~~e~~v~------~~~TV~~lK~ki~~~~Gi-p~~~ 47 (122)
T 1t0y_A 3 MTE-VYDLEITTN-ATD--FPMEKKYP------AGMSLNDLKKKLELVVGT-TVDS 47 (122)
T ss_dssp CCC-EEEEEEEES-SCC--SCEEEEEE------TTSBHHHHHHHHHHHHCC-CTTT
T ss_pred CCC-EEEEEEEEC-CCC--ccEEEEeC------CCCcHHHHHHHHHHHhCC-CHHH
Confidence 555 577777663 222 12333322 455678999999999997 5554
No 206
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=20.85 E-value=1.5e+02 Score=20.50 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk 86 (98)
...+..+|++.++. +|. ....+.+.. ... +.+.|||.| |.+.+.+.+
T Consensus 127 ~~~t~~~l~~~f~~-~G~-~i~~v~i~~--~~~--~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 127 PSYTQRNIRDLLQD-INV-VALSIRLPS--LRF--NTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCCEEECC-----------CCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-CeEEEEEEe--CCC--CCcceEEEEEECCHHHHHH
Confidence 45678888887766 552 234444332 222 446667665 666665544
No 207
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.79 E-value=1.2e+02 Score=16.89 Aligned_cols=47 Identities=11% Similarity=0.235 Sum_probs=28.5
Q ss_pred ccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 4 ~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
.++.|.++.. +-+.+.++|. ++-+-.+++++|++..++...++-+++
T Consensus 6 ~~m~i~vk~~------~g~~~~~~v~----~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 6 SGMQLTVKAL------QGRECSLQVP----EDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SSEEEEEEET------TSCEEEEEEC----SSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CcEEEEEEeC------CCCEEEEEEC----CCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 3566666531 2244555532 445679999999999997333444443
No 208
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=20.63 E-value=42 Score=20.28 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
....+..+|++.++ .+|. =.++.++. + |.. .|||.| |.+.+.+.
T Consensus 17 p~~~t~~~l~~~F~-~~G~-v~~v~i~~---~--~~~--~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 17 PYKITAEEMYDIFG-KYGP-IRQIRVGN---T--PET--RGTAYVVYEDIFDAK 61 (115)
T ss_dssp CTTCCHHHHHHHHH-TTSC-EEEEEEEC---S--TTT--TTCEEEEESSHHHHH
T ss_pred CCCCCHHHHHHHHH-hcCC-eEEEEEee---C--CCC--CcEEEEEECCHHHHH
Confidence 35667888887776 4552 22332322 1 333 555554 66665554
No 209
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=20.55 E-value=78 Score=22.13 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=17.7
Q ss_pred CHHHHHHHHHhHcCCCCCCeEEEe
Q 034307 37 SKAELKEKLARMYDVRDANAIFVF 60 (98)
Q Consensus 37 sr~ei~~klA~~~~v~~~~~ivV~ 60 (98)
-..++++.+|+.+++ +++.|++.
T Consensus 44 ~~~~~~~~la~~~~~-~~~~i~~~ 66 (382)
T 4hvk_A 44 AVQEAREKVAKLVNG-GGGTVVFT 66 (382)
T ss_dssp HHHHHHHHHHHHTTC-TTEEEEEE
T ss_pred HHHHHHHHHHHHcCC-CcCeEEEE
Confidence 345899999999995 87766553
No 210
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.54 E-value=1.5e+02 Score=17.80 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEE
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIF 58 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~iv 58 (98)
++-+-.+++++|++..++ +++..-
T Consensus 35 ~~~TV~~LK~~I~~~tgi-p~~~Qr 58 (95)
T 1v86_A 35 LDSTGSELKQKIHSITGL-PPAMQK 58 (95)
T ss_dssp TTSBHHHHHHHHHHHHCS-CSTTCC
T ss_pred CCCcHHHHHHHHHHHHCc-CHHHeE
Confidence 345679999999999997 555433
No 211
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=20.48 E-value=28 Score=19.57 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=17.6
Q ss_pred cCCCCCCCHHHHHHHHHhHcCCCCCC
Q 034307 30 HPGRANVSKAELKEKLARMYDVRDAN 55 (98)
Q Consensus 30 h~~~~TPsr~ei~~klA~~~~v~~~~ 55 (98)
|...+-|+..+. +.||+.+|+ ++.
T Consensus 25 ~~~~~yp~~~~r-~~La~~~~L-~~~ 48 (64)
T 1du6_A 25 HLSNPYPSEEAK-EELAKKCGI-TVS 48 (64)
T ss_dssp TTTSCCCCHHHH-HHHHHHHTS-CHH
T ss_pred cccCCCCCHHHH-HHHHHHHCc-CHH
Confidence 456788888776 569999996 543
No 212
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=20.37 E-value=92 Score=22.60 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeE
Q 034307 24 FVIDVLHPGRANVSKAELKEKLARMYDVRDANAI 57 (98)
Q Consensus 24 i~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~i 57 (98)
+.+. +|.=..||+.+|+.+.+++|... ..|.+
T Consensus 142 iI~S-~Hdf~~TP~~~el~~~~~~~~~~-gaDIv 173 (258)
T 4h3d_A 142 VIIS-NHDFNKTPKKEEIVSRLCRMQEL-GADLP 173 (258)
T ss_dssp EEEE-EEESSCCCCHHHHHHHHHHHHHT-TCSEE
T ss_pred EEEE-EecCCCCCCHHHHHHHHHHHHHh-CCCEE
Confidence 4444 56558899999999999999763 55543
No 213
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=20.37 E-value=2.2e+02 Score=19.68 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=42.0
Q ss_pred ccCcce-eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE---eCCHHHHHh
Q 034307 16 NRLLSR-KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI---YDSVESAKK 86 (98)
Q Consensus 16 N~LL~R-kEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I---Yds~e~~kk 86 (98)
..++.. .+++|.|.- .-++.||++.+-++|+| ++.-|..+... .|.=.+|+.. ||..|.+.+
T Consensus 83 ~~~~E~~N~~vF~Vd~----~AnK~qIK~AVEklf~V---kV~kVNTl~~~--~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 83 MKKIEDNNTLVFIVDL----KADKKKIKAAVKKMYDI---QAKKVNTLIRP--DGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp HHHHHHHSEEEEEECS----SCCSHHHHHHHHHHHTC---CEEEEEEEECT--TSSEEEEEEECTTSCHHHHHGG
T ss_pred HHHHHhCCEEEEEEcC----CCCHHHHHHHHHHHhCC---cceEEEeeEcC--CCceEEEEEcCCCCcHHHHHHh
Confidence 344444 678888643 45699999999999997 66666777654 4555666666 555665544
No 214
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.36 E-value=63 Score=18.28 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCC
Q 034307 32 GRANVSKAELKEKLARMYDVRDAN 55 (98)
Q Consensus 32 ~~~TPsr~ei~~klA~~~~v~~~~ 55 (98)
|...|+. +...+||+.||+ +++
T Consensus 48 g~~~~~~-~~~~~ia~~l~v-~~~ 69 (80)
T 3kz3_A 48 GINALNA-YNAALLAKILKV-SVE 69 (80)
T ss_dssp TSSCCCH-HHHHHHHHHHTS-CGG
T ss_pred CCCCCCH-HHHHHHHHHhCC-CHH
Confidence 4455655 777899999997 655
No 215
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=20.33 E-value=24 Score=21.36 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=21.4
Q ss_pred CHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 37 SKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 37 sr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
+..+|++.++ .+| ....|.+. . ..|.+.|||.| |.+.+.+.
T Consensus 34 t~~~l~~~F~-~~G--~v~~v~i~---~--~~g~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 34 LKNVIHKIFS-KFG--KITNDFYP---E--EDGKTKGYIFLEYASPAHAV 75 (105)
T ss_dssp HHHHHHHHHG-GGS--CEEEEECC---C--BTTBSCCEEEEEECSSSHHH
T ss_pred HHHHHHHHHh-cCC--CEEEEEee---C--CCCCeeeEEEEEECCHHHHH
Confidence 3566766554 466 12222222 1 34577788876 66655443
No 216
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=20.28 E-value=73 Score=19.92 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
...+.++|++-++. +| ...-|. +...-..|.+.|||.| |.+.+.+.
T Consensus 13 ~~~t~~~l~~~F~~-~G----~i~~v~-i~~~~~~g~~~g~afV~f~~~~~a~ 59 (167)
T 2cjk_A 13 WDTTEDNLREYFGK-YG----TVTDLK-IMKDPATGRSRGFGFLSFEKPSSVD 59 (167)
T ss_dssp TTCCHHHHHHHHTT-TC----CEEEEE-CCCCTTTSSCCSCEEEEESSTHHHH
T ss_pred CCCCHHHHHHHHHh-CC----CEEEEE-EEECCCCCCccceEEEEEccHHHHH
Confidence 45577787776643 55 122121 2222234556666655 55555443
No 217
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.18 E-value=93 Score=19.60 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 034307 35 NVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (98)
Q Consensus 35 TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~k 85 (98)
..+..||++.. +.||- =.++.++.+ .|||.| |++.+.|.
T Consensus 27 ~vte~dL~~lF-~~fG~-V~~v~i~~~----------kGfaFVeF~~~~~A~ 66 (105)
T 1sjq_A 27 DVTEGEVISLG-LPFGK-VTNLLMLKG----------KNQAFIEMNTEEAAN 66 (105)
T ss_dssp TSCHHHHHHHH-HHHCC-EEEEEEETT----------TTEEEEEESSHHHHH
T ss_pred CCCHHHHHHHH-HhcCC-EEEEEEEcC----------CCEEEEEECCHHHHH
Confidence 45677887655 45772 234444432 466665 66666543
Done!