Your job contains 1 sequence.
>034314
MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR
RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034314
(98 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ... 261 1.6e-22 1
TAIR|locus:2053893 - symbol:HMGB4 "high mobility group B4... 207 8.6e-17 1
TAIR|locus:2128003 - symbol:HMGB5 "high mobility group B5... 178 1.0e-13 1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 126 3.3e-08 1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 126 3.3e-08 1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 125 4.2e-08 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 125 4.2e-08 1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 125 4.2e-08 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 125 4.2e-08 1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 125 4.2e-08 1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 125 4.2e-08 1
TAIR|locus:2154433 - symbol:HMGB6 "high-mobility group bo... 126 6.9e-08 1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob... 121 1.1e-07 1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr... 121 1.1e-07 1
UNIPROTKB|F1N1P2 - symbol:F1N1P2 "Uncharacterized protein... 121 1.1e-07 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 119 2.1e-07 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 119 2.2e-07 1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 120 2.4e-07 1
ZFIN|ZDB-GENE-030131-8480 - symbol:hmgb1b "high-mobility ... 116 3.8e-07 1
FB|FBgn0010228 - symbol:HmgZ "HMG protein Z" species:7227... 116 3.8e-07 1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 116 3.8e-07 1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 115 4.8e-07 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 115 4.8e-07 1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 117 4.9e-07 1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 117 5.0e-07 1
WB|WBGene00001974 - symbol:hmg-4 species:6239 "Caenorhabd... 126 5.2e-07 1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot... 116 5.5e-07 1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 116 5.8e-07 1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 115 8.2e-07 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 115 8.4e-07 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 115 8.4e-07 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 115 8.5e-07 1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 115 8.5e-07 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 115 8.5e-07 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 115 8.5e-07 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 115 8.5e-07 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 115 8.5e-07 1
UNIPROTKB|F6QYV9 - symbol:SSRP1 "Uncharacterized protein"... 124 8.7e-07 1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 121 9.4e-07 1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot... 113 9.9e-07 1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 112 1.0e-06 1
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil... 112 1.0e-06 1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot... 112 1.0e-06 1
UNIPROTKB|Q8I616 - symbol:HMGB1 "High mobility group prot... 112 1.0e-06 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 112 1.0e-06 1
UNIPROTKB|J9NYX4 - symbol:SSRP1 "Uncharacterized protein"... 122 1.0e-06 1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 114 1.0e-06 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 114 1.1e-06 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 114 1.1e-06 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 114 1.1e-06 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 114 1.1e-06 1
UNIPROTKB|I3LLA8 - symbol:SSRP1 "Uncharacterized protein"... 123 1.1e-06 1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 113 1.2e-06 1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 113 1.3e-06 1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 113 1.3e-06 1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 113 1.3e-06 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 111 1.4e-06 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 113 1.4e-06 1
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"... 122 1.4e-06 1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility... 112 1.7e-06 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 112 1.7e-06 1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 112 1.7e-06 1
TAIR|locus:2098413 - symbol:HMG "high mobility group" spe... 120 2.1e-06 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 111 2.3e-06 1
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog... 120 2.3e-06 1
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR... 120 2.3e-06 1
MGI|MGI:107912 - symbol:Ssrp1 "structure specific recogni... 120 2.3e-06 1
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR... 120 2.3e-06 1
RGD|621143 - symbol:Ssrp1 "structure specific recognition... 120 2.3e-06 1
UNIPROTKB|Q04931 - symbol:Ssrp1 "FACT complex subunit SSR... 120 2.3e-06 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 108 2.6e-06 1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot... 110 2.8e-06 1
UNIPROTKB|F1LZ54 - symbol:F1LZ54 "Uncharacterized protein... 107 3.4e-06 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 106 4.3e-06 1
TAIR|locus:2128504 - symbol:3xHMG-box2 "3xHigh Mobility G... 115 4.3e-06 1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist... 107 7.0e-06 1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 103 9.0e-06 1
UNIPROTKB|Q5T7C0 - symbol:HMGB1 "High mobility group prot... 103 9.0e-06 1
UNIPROTKB|Q5T7C6 - symbol:HMGB1 "High mobility group prot... 103 9.0e-06 1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility... 105 1.1e-05 1
UNIPROTKB|D4A2L7 - symbol:D4A2L7 "Uncharacterized protein... 102 1.1e-05 1
RGD|1560584 - symbol:RGD1560584 "similar to High mobility... 104 1.3e-05 1
MGI|MGI:1916567 - symbol:Hmgb4 "high-mobility group box 4... 102 1.4e-05 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 101 1.5e-05 1
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso... 101 1.5e-05 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 101 1.5e-05 1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility... 104 1.5e-05 1
UNIPROTKB|J9P699 - symbol:HMGB1 "High mobility group prot... 103 1.5e-05 1
FB|FBgn0004362 - symbol:HmgD "High mobility group protein... 100 1.9e-05 1
RGD|1594733 - symbol:LOC690521 "similar to High mobility ... 103 2.0e-05 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 103 2.0e-05 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 103 2.0e-05 1
RGD|2319567 - symbol:LOC100361707 "Ac2-008-like" species:... 103 2.1e-05 1
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1... 102 2.5e-05 1
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein... 100 3.2e-05 1
UNIPROTKB|F1LVZ2 - symbol:F1LVZ2 "Uncharacterized protein... 100 3.5e-05 1
FB|FBgn0011764 - symbol:Dsp1 "Dorsal switch protein 1" sp... 105 4.1e-05 1
UNIPROTKB|F1M1H9 - symbol:F1M1H9 "Uncharacterized protein... 98 4.2e-05 1
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR... 108 4.3e-05 1
ZFIN|ZDB-GENE-050417-290 - symbol:hmgb3b "high-mobility g... 99 4.5e-05 1
WARNING: Descriptions of 56 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 47/67 (70%), Positives = 60/67 (89%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FRE +KK++PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN+
Sbjct: 49 MEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNK 108
Query: 61 RQAEGTK 67
+ EG K
Sbjct: 109 KLEEGPK 115
>TAIR|locus:2053893 [details] [associations]
symbol:HMGB4 "high mobility group B4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006084 "acetyl-CoA metabolic
process" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0000785 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AC007584 HOGENOM:HOG000197860 GO:GO:0030527
eggNOG:NOG320947 EMBL:Y14074 EMBL:F20020 EMBL:AF370150
EMBL:AF370562 EMBL:AY150467 EMBL:AK317044 EMBL:AY086336
IPI:IPI00516334 IPI:IPI00656969 PIR:F84553 PIR:T51596
RefSeq:NP_001031364.2 RefSeq:NP_001077909.1 RefSeq:NP_179347.1
UniGene:At.481 HSSP:P11632 ProteinModelPortal:Q42344 SMR:Q42344
STRING:Q42344 PaxDb:Q42344 PRIDE:Q42344 EnsemblPlants:AT2G17560.1
EnsemblPlants:AT2G17560.2 GeneID:816263 KEGG:ath:AT2G17560
TAIR:At2g17560 InParanoid:Q42344 OMA:LANPNNK PhylomeDB:Q42344
ProtClustDB:CLSN2683898 Genevestigator:Q42344 Uniprot:Q42344
Length = 138
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 37/66 (56%), Positives = 51/66 (77%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++ +P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN
Sbjct: 46 LEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNL 105
Query: 61 RQAEGT 66
+ A GT
Sbjct: 106 KLASGT 111
>TAIR|locus:2128003 [details] [associations]
symbol:HMGB5 "high mobility group B5" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0000785 GO:GO:0003700 GO:GO:0003682 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AL161587 EMBL:AL031135 HOGENOM:HOG000197860
GO:GO:0030527 HSSP:P11632 EMBL:Y14075 EMBL:AK317173 EMBL:BT025597
EMBL:AY085615 IPI:IPI00535971 PIR:T04662 RefSeq:NP_195282.1
UniGene:At.482 ProteinModelPortal:O49597 SMR:O49597 STRING:O49597
PaxDb:O49597 PRIDE:O49597 EnsemblPlants:AT4G35570.1 GeneID:829709
KEGG:ath:AT4G35570 TAIR:At4g35570 InParanoid:O49597 OMA:YNMELAN
PhylomeDB:O49597 ProtClustDB:CLSN2916185 Genevestigator:O49597
Uniprot:O49597
Length = 125
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 30/67 (44%), Positives = 48/67 (71%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+++FR+++ +P NKSV VG+A G+KWK+M+E ++AP+VAK++ +K EY M+ YN
Sbjct: 45 LDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNM 104
Query: 61 RQAEGTK 67
A G K
Sbjct: 105 ELANGNK 111
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++S+ +K PYV KA K K +YEKD+ +Y +
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKG 164
Query: 62 QAEGTK 67
+ +G K
Sbjct: 165 KFDGAK 170
Score = 103 (41.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y A
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDREMKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y +
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKG 164
Query: 62 QAEGTK 67
+ +G K
Sbjct: 165 KFDGAK 170
Score = 101 (40.6 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y A
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y +
Sbjct: 106 EFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADYKSKG 164
Query: 62 QAEGTK 67
+ +G K
Sbjct: 165 KFDGAK 170
Score = 103 (41.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y A
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDREMKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y +
Sbjct: 106 EFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKG 164
Query: 62 QAEGTK 67
+ +G K
Sbjct: 165 KFDGAK 170
Score = 101 (40.6 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y A
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y +
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKG 164
Query: 62 QAEGTK 67
+ +G K
Sbjct: 165 KFDGAK 170
Score = 101 (40.6 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y A
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y +
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKG 164
Query: 62 QAEGTK 67
+ +G K
Sbjct: 165 KFDGAK 170
Score = 101 (40.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y A
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y +
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKG 164
Query: 62 QAEGTK 67
+ +G K
Sbjct: 165 KFDGAK 170
Score = 101 (40.6 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y A
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y +
Sbjct: 106 EFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKG 164
Query: 62 QAEGTK 67
+ +G K
Sbjct: 165 KFDGAK 170
Score = 100 (40.3 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPY--VAKAEKRKVEYEKDMKNYNRR 61
RE++KK +P+ + A K E+WK+MS +K+ + +AKA+K V Y+++MK+Y
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADK--VRYDREMKDYG-- 79
Query: 62 QAEGTK 67
A+G K
Sbjct: 80 PAKGGK 85
>TAIR|locus:2154433 [details] [associations]
symbol:HMGB6 "high-mobility group box 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P07155 EMBL:AB018110 HOGENOM:HOG000242532 EMBL:AK118688
EMBL:AY086023 IPI:IPI00542717 RefSeq:NP_568431.1 UniGene:At.31011
ProteinModelPortal:Q8LDF9 SMR:Q8LDF9 STRING:Q8LDF9 PaxDb:Q8LDF9
PRIDE:Q8LDF9 EnsemblPlants:AT5G23420.1 GeneID:832408
KEGG:ath:AT5G23420 TAIR:At5g23420 eggNOG:NOG297541
InParanoid:Q8LDF9 OMA:AFFLFMD PhylomeDB:Q8LDF9
ProtClustDB:CLSN2689854 Genevestigator:Q8LDF9 Uniprot:Q8LDF9
Length = 241
Score = 126 (49.4 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
M +FR+ +K +H N S+A K GGEKWKS++E +K Y+ KA + K EY K +++ +
Sbjct: 126 MSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESND 183
Query: 60 RRQAE 64
+ E
Sbjct: 184 ADEEE 188
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 1 MEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+++ R + K+ P+ K VA VGK GE W +S A KAPY KA+ KV Y K+++ Y
Sbjct: 35 VKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYR 94
Query: 60 RRQAE 64
++ E
Sbjct: 95 KKNQE 99
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 1 MEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+++ R + K+ P+ K VA VGK GE W +S A KAPY KA+ KV Y K+++ Y
Sbjct: 35 VKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYR 94
Query: 60 RRQAE 64
++ E
Sbjct: 95 KKNQE 99
>UNIPROTKB|F1N1P2 [details] [associations]
symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
Length = 199
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EF + K HP S+ V K GE W ++S+++K PY+ KA K K +YEKD ++ R
Sbjct: 105 EFHPKIKSTHP-GISIRDVAKKLGEMWNNLSDSEKQPYINKAAKLK-KYEKDAADHKSRG 162
Query: 62 QAEGTK 67
+ +GTK
Sbjct: 163 KFDGTK 168
Score = 90 (36.7 bits), Expect = 0.00049, P = 0.00049
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK + + + A K E+WK+MS +K+ + A+ K+ Y+++MK+Y A
Sbjct: 24 REEHKKKNSEVPVNFAEFSKKCSERWKTMSRKEKSKFDEMAKAYKMHYDQEMKDYG--PA 81
Query: 64 EGTK 67
G K
Sbjct: 82 RGGK 85
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 119 (46.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y +
Sbjct: 105 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKG 163
Query: 62 QAEGTK 67
+ +G K
Sbjct: 164 KFDGAK 169
Score = 103 (41.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE++KK+ + A K E+WK+MS +KA + A+ KV Y+++MK+Y A+
Sbjct: 24 REEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDREMKDYG--PAK 81
Query: 65 GTK 67
G K
Sbjct: 82 GGK 84
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 119 (46.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y +
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKG 164
Query: 62 QAEGTK 67
+ +G K
Sbjct: 165 KFDGAK 170
Score = 106 (42.4 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y+++MK+Y A
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDREMKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 120 (47.3 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y +
Sbjct: 124 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADYKSKG 182
Query: 62 QAEGTK 67
+ +G K
Sbjct: 183 KFDGAK 188
Score = 101 (40.6 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y A
Sbjct: 42 REEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--PA 99
Query: 64 EGTK 67
+G K
Sbjct: 100 KGGK 103
>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
symbol:hmgb1b "high-mobility group box 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
Length = 165
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP+ + + + K E+WK+MS +K + A++ KV YE++MKNY
Sbjct: 23 REEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYEREMKNY 77
Score = 90 (36.7 bits), Expect = 0.00028, P = 0.00028
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 9 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65
K ++P S+ + K GE W S S K PY KA K K +Y+KD+ Y + G
Sbjct: 81 KGENP-GLSIGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYRTKGIAG 136
>FB|FBgn0010228 [details] [associations]
symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
GermOnline:CG17921 Uniprot:Q06943
Length = 111
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KKD+P +K V + K GGE W+ + DK + KA K K EY K +K Y
Sbjct: 17 LNETREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKAVKEY 71
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E RE+ K D+P + + +G G++WK ++ ++ PY KA + K YE++ K Y+ +
Sbjct: 29 ENREKMKTDNP-DATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERYERERKEYDTKL 87
Query: 63 AEGTK 67
A G K
Sbjct: 88 ANGEK 92
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 73 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 128
Query: 63 AEGTKP 68
A+G KP
Sbjct: 129 AKG-KP 133
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 117 (46.2 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
EFR + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K+ YEK+MKNY +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNYVPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 117 (46.2 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
EFR + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K+ YEK+MKNY +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNYVPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>WB|WBGene00001974 [details] [associations]
symbol:hmg-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
NextBio:890908 Uniprot:P41848
Length = 697
Score = 126 (49.4 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 29/66 (43%), Positives = 38/66 (57%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR--Q 62
R + K+D SVA V K GG KWK+MS DK + KAE+ K YEK+MK Y +
Sbjct: 571 RNELKED---GDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPP 627
Query: 63 AEGTKP 68
+ +KP
Sbjct: 628 SSSSKP 633
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 116 (45.9 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
E R + K DHP S+ K GE W S DK PY KA K K +YEKD+ Y +
Sbjct: 108 EHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
Score = 108 (43.1 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A + E+WK+MS +K + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDREMKNY 78
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 116 (45.9 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
E R + K +HP S+ K GE W S DK PY KA K K EYEKD+ Y +
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEEYEKDIAAYRAK 165
Score = 106 (42.4 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++K HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 115 (45.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 115 (45.5 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIPAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 115 (45.5 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIPAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 115 (45.5 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 115 (45.5 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 115 (45.5 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 115 (45.5 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 115 (45.5 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 115 (45.5 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|F6QYV9 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
Uniprot:F6QYV9
Length = 709
Score = 124 (48.7 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K DHP SV + K GE WK MS+ K + KAE + EYEK MK Y + E
Sbjct: 562 REKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGE 620
Query: 65 GTK 67
+K
Sbjct: 621 SSK 623
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 121 (47.7 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 14 KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
+NKSV V K GE+WK++SE KAPY A+K K Y ++M+ Y R + E
Sbjct: 267 ENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYKRTKEE 317
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 113 (44.8 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y +
Sbjct: 97 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKG 155
Query: 62 QAEGTK 67
++E K
Sbjct: 156 KSEAGK 161
Score = 112 (44.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 13 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 67
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R+ + ++P S VGK GEKWK+++ DK PY KAE K YEK+ Y ++
Sbjct: 32 ENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKN 90
Query: 63 A 63
+
Sbjct: 91 S 91
>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
symbol:PFL0145c "high mobility group protein"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+ E K +K VA VGK GE W + E +KAP+ KA++ K+ YEK+ Y
Sbjct: 34 EKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQEDKLRYEKEKAEY 90
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>UNIPROTKB|Q8I616 [details] [associations]
symbol:HMGB1 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+ E K +K VA VGK GE W + E +KAP+ KA++ K+ YEK+ Y
Sbjct: 34 EKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQEDKLRYEKEKAEY 90
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R+ + ++P S VGK GEKWK+++ DK PY KAE K YEK+ Y ++
Sbjct: 32 ENRDIVRAENP-GISFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKN 90
Query: 63 A 63
+
Sbjct: 91 S 91
>UNIPROTKB|J9NYX4 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
Length = 551
Score = 122 (48.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + E
Sbjct: 404 REKIKADHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGE 462
Query: 65 GTK 67
+K
Sbjct: 463 SSK 465
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y R +
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY-RAK 165
Query: 63 AEG 65
+G
Sbjct: 166 GKG 168
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEKDTAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 108 (43.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + V K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEKDTAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 108 (43.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + V K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAVDDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++ K HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKVDKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|I3LLA8 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
Length = 709
Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + E
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGE 620
Query: 65 GTK 67
+K
Sbjct: 621 SSK 623
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
EFR + K++ P S+ V K GE W +S +K PY KA K K +YEKD+ Y +
Sbjct: 107 EFRPKVKEETP-GLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDIAAYRSKG 165
Query: 63 AEG 65
G
Sbjct: 166 KVG 168
Score = 109 (43.4 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP+ + + K E+WK+MS +K + A+ K YE++MKNY +
Sbjct: 23 REEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNYIPPKG 82
Query: 64 EGTK 67
E K
Sbjct: 83 EKKK 86
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 113 (44.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y +
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKG 166
Query: 62 QAEGTK 67
++E K
Sbjct: 167 KSEAGK 172
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 113 (44.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y +
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKG 166
Query: 62 QAEGTK 67
++E K
Sbjct: 167 KSEAGK 172
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 113 (44.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y +
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKG 166
Query: 62 QAEGTK 67
++E K
Sbjct: 167 KSEAGK 172
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 111 (44.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
EF + K +P + V K GE WK++++++K PY+ +A K K +YEKD+ Y +
Sbjct: 105 EFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKG 163
Query: 62 QAEGTK 67
+++G K
Sbjct: 164 KSDGAK 169
Score = 102 (41.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +PK + A K E+WK+MS+ +K+ + A+ KV Y++++K+Y A
Sbjct: 24 REEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 113 (44.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEIWNNTAADDKQPYEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|F1Q2J2 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
Length = 710
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + E
Sbjct: 561 REKIKADHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGE 619
Query: 65 GTK 67
+K
Sbjct: 620 SSK 622
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y +
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
Score = 111 (44.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y +
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y +
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
>TAIR|locus:2098413 [details] [associations]
symbol:HMG "high mobility group" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
Length = 646
Score = 120 (47.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
R+ KK+HP + VGK G+KW+ MS DK PY AKA+ K Y+ ++ +Y Q
Sbjct: 577 RDNIKKEHP-GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQ 633
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
Score = 108 (43.1 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR- 61
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y +
Sbjct: 108 ENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKG 166
Query: 62 QAEGTK 67
++E K
Sbjct: 167 KSEAGK 172
>UNIPROTKB|B6ZLK1 [details] [associations]
symbol:SSRP1 "Structure-specific recognition protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
Length = 706
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN-RRQA 63
RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+ ++
Sbjct: 560 REKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYSVGNKS 618
Query: 64 EGTK 67
E +K
Sbjct: 619 ESSK 622
>UNIPROTKB|Q04678 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
NextBio:20816548 Uniprot:Q04678
Length = 706
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN-RRQA 63
RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+ ++
Sbjct: 560 REKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYSVGNKS 618
Query: 64 EGTK 67
E +K
Sbjct: 619 ESSK 622
>MGI|MGI:107912 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
CleanEx:MM_SSRP1 Genevestigator:Q08943
GermOnline:ENSMUSG00000027067 Uniprot:Q08943
Length = 708
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + +
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGD 620
Query: 65 GTK 67
+K
Sbjct: 621 SSK 623
>UNIPROTKB|Q08945 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
Length = 709
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y + E
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGE 620
Query: 65 GTK 67
+K
Sbjct: 621 SSK 623
>RGD|621143 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + +
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGD 620
Query: 65 GTK 67
+K
Sbjct: 621 SSK 623
>UNIPROTKB|Q04931 [details] [associations]
symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
"Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + +
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGD 620
Query: 65 GTK 67
+K
Sbjct: 621 SSK 623
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R++ ++++P S VGK GEKWKS+S+ ++ PY KA K YE + Y +AE
Sbjct: 42 RDKVREENP-GISFGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYKAGEAE 100
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 110 (43.8 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
E R + K DHP S+ K GE W DK PY KA K K +YEKD+ Y +
Sbjct: 108 EHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
Score = 108 (43.1 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A + E+WK+MS +K + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDREMKNY 78
>UNIPROTKB|F1LZ54 [details] [associations]
symbol:F1LZ54 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00765905
Ensembl:ENSRNOT00000045990 Uniprot:F1LZ54
Length = 160
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPY--VAKAEKRKVEYEKDMKN 57
++ ++E++KK HP + + + K E+WK+MS +K + VAKA+K YE++MK
Sbjct: 20 VQAYQEEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKGKFEDVAKADK--AHYEREMKT 77
Query: 58 YNRRQAEGTK 67
Y + E K
Sbjct: 78 YISPKGETKK 87
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
E R+ + ++P + + VGK GEKWK+++ +K PY AKA+ K YE + + YN
Sbjct: 34 ENRDIVRSENP-DITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 115 (45.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 14 KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
+NKSV V K GE+WK++S+ KAPY A+K K Y + M+ Y R + E
Sbjct: 276 ENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKRTKEE 326
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 107 (42.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY A K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAADDKQPYGKMAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 100 (40.3 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMAKADKARYEREMKTYIPHKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 53
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEK
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|Q5T7C6 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
Ensembl:ENST00000426225 Uniprot:Q5T7C6
Length = 162
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 105 (42.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK PY A K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVVKKLGEMWTNTAADDKQPYEKMAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYISPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|D4A2L7 [details] [associations]
symbol:D4A2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
Length = 135
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 78
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 9 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 82 KGEHP-GLSIGDVVKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 133
>RGD|1560584 [details] [associations]
symbol:RGD1560584 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00559222
Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
Length = 204
Score = 104 (41.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK P KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAVDDKQPCEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 98 (39.6 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 5 REQYKKDHPKNKSV--AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
RE++KK H N SV + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKH-LNASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 82
Query: 63 AEGTK 67
E K
Sbjct: 83 GETKK 87
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 102 (41.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY- 58
M FR ++K+ P + EKW+S+S+ +KA Y A AE K Y+++M NY
Sbjct: 20 MLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAELDKARYQQEMMNYI 79
Query: 59 -NRRQAEGTKP 68
RR+ P
Sbjct: 80 GKRRKRRKRDP 90
Score = 100 (40.3 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 5 REQY---KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R+ Y K+++P + +V V KA G+ W + EA+K PY KA + +Y ++ + Y R
Sbjct: 105 RDHYAMLKQENP-DWTVVQVAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFEEQEAY-RN 162
Query: 62 QAEGTK 67
Q +G K
Sbjct: 163 QCQGRK 168
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y A
Sbjct: 24 REEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG--PA 81
Query: 64 EGTK 67
+G K
Sbjct: 82 KGGK 85
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKY 153
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R+ ++++P + VGK GE+WK++S+ +APY AKA K YE + Y
Sbjct: 37 EQRDNVREENP-GVTFGQVGKILGERWKALSDKQRAPYDAKAAADKKRYEDEKAAY 91
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R+ + ++P + + VG+ GE+WK+++ +K PY +KA+ K YE + + YN +
Sbjct: 40 ENRDIVRSENP-DVTFGQVGRILGERWKALTAEEKQPYESKAQADKKRYESEKELYNATR 98
Query: 63 A 63
A
Sbjct: 99 A 99
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+ + K +HP S+ V K GE W + + DK P KA K K +YEKD+ Y Q
Sbjct: 108 EYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAY---Q 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 88 (36.0 bits), Expect = 0.00095, P = 0.00095
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK H + + + E+WK+MS +K + A+ K YE+ MK Y +
Sbjct: 24 REEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMAKADKTHYERQMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 103 (41.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
Score = 102 (41.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 53
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEK
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
>FB|FBgn0004362 [details] [associations]
symbol:HmgD "High mobility group protein D" species:7227
"Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
[GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
Length = 112
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE K+++P K V V K GGE W++M DK+ + AKA K K +Y++ +K +
Sbjct: 20 RESIKRENPGIK-VTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAVKEF 70
>RGD|1594733 [details] [associations]
symbol:LOC690521 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
Length = 213
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
Score = 94 (38.1 bits), Expect = 0.00021, P = 0.00021
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK P A K K +YEKD Y +
Sbjct: 107 EYRPKIKGEHPA-LSIGDVTKKLGEVWTNTASDDKQPCEKMAAKLKEKYEKDTAAY---R 162
Query: 63 AEGTKP 68
A+G KP
Sbjct: 163 AKG-KP 167
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
Score = 101 (40.6 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+ + K +HP S+ V K GE W + + DK P KA K K +YEKD+ Y +
Sbjct: 108 EYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
Score = 101 (40.6 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+ + K +HP S+ V K GE W + + DK P KA K K +YEKD+ Y +
Sbjct: 108 EYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
>RGD|2319567 [details] [associations]
symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
Uniprot:F1LNG6
Length = 219
Score = 103 (41.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 152 REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 211
Query: 64 EGTK 67
E K
Sbjct: 212 ETKK 215
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 102 (41.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + DK P KA K K +YEKD+ Y +
Sbjct: 108 EYRPKIKGEHP-GLSIGDVVKKLGEMWNNTAVDDKQPCEKKAAKLKEKYEKDIAAY---R 163
Query: 63 AEGTKP 68
A+G KP
Sbjct: 164 AKG-KP 168
Score = 99 (39.9 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 5 REQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+E++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 24 QEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 83
Query: 64 EGTK 67
E K
Sbjct: 84 ETKK 87
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 100 (40.3 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
EF + K +P S+ V K GE W ++S++ K YV K K K +YEKD+ +Y + +
Sbjct: 103 EFCSEIKSTNP-GISIGDVAKKLGEMWNNLSDSKKQLYVNKDAKLK-KYEKDVADY-KGE 159
Query: 63 AEGTK 67
+GTK
Sbjct: 160 FDGTK 164
Score = 89 (36.4 bits), Expect = 0.00060, P = 0.00060
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R+++KK + A K E+WK+MS +K+ + A+ KV Y ++MK+Y A+
Sbjct: 24 RKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAKADKVHYNQEMKDYG--SAK 81
Query: 65 GTK 67
G K
Sbjct: 82 GGK 84
>UNIPROTKB|F1LVZ2 [details] [associations]
symbol:F1LVZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
Length = 199
Score = 100 (40.3 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 7 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66
Q K +HP S+ V K GE W S ++ DK PY A K K +YEKD+ Y +A+G
Sbjct: 99 QIKGEHP-GLSIGDVAKKLGEMWNS-TDTDKQPYGKMAAKLKEKYEKDIAAY---RAKG- 152
Query: 67 KP 68
KP
Sbjct: 153 KP 154
>FB|FBgn0011764 [details] [associations]
symbol:Dsp1 "Dorsal switch protein 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0043388 "positive
regulation of DNA binding" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0017025 "TBP-class protein binding" evidence=IPI]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0032502 "developmental process" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0006338 "chromatin
remodeling" evidence=IMP] [GO:0007379 "segment specification"
evidence=IMP] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0035218 "leg disc development" evidence=IMP] [GO:0008348
"negative regulation of antimicrobial humoral response"
evidence=IGI;IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 EMBL:AE014298 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0003697 GO:GO:0007379 GO:GO:0005700
GO:GO:0043388 Pfam:PF09011 GO:GO:0006268
GeneTree:ENSGT00560000076898 EMBL:U13881 EMBL:X89811 EMBL:X81456
EMBL:AY060841 PIR:JC6179 PIR:S50068 RefSeq:NP_542446.2
RefSeq:NP_727959.2 RefSeq:NP_727960.1 RefSeq:NP_727961.1
RefSeq:NP_996485.1 UniGene:Dm.2879 ProteinModelPortal:Q24537
SMR:Q24537 DIP:DIP-29511N MINT:MINT-344326 STRING:Q24537
PaxDb:Q24537 PRIDE:Q24537 EnsemblMetazoa:FBtr0089263 GeneID:117294
KEGG:dme:Dmel_CG12223 CTD:117294 FlyBase:FBgn0011764
InParanoid:Q24537 KO:K10802 OrthoDB:EOG480GCJ ChiTaRS:Dsp1
GenomeRNAi:117294 NextBio:841819 Bgee:Q24537 GermOnline:CG12223
GO:GO:0035218 GO:GO:0008348 GO:GO:0017055 Uniprot:Q24537
Length = 393
Score = 105 (42.0 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 5 REQYKKDHPKNKSV-AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 194 REEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 248
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 98 (39.6 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+ + K +HP S+ V K GE W + + DK P KA K K +YEKD Y +
Sbjct: 109 EYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDNAAY---R 164
Query: 63 AEGTKP 68
A+G KP
Sbjct: 165 AKG-KP 169
Score = 95 (38.5 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 5 REQYKKDH-PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
RE++KK H + + + K E+WK+MS +K + A+ K YE++MK Y +
Sbjct: 25 REEHKKKHWDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 84
Query: 64 EGTK 67
E K
Sbjct: 85 ETKK 88
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 108 (43.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K ++P S+ + K GE WK+MS K + +AE+ K +YEK MK YN
Sbjct: 556 REKIKSENP-GISITDLSKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKAMKEYN 609
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 99 (39.9 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R K +P + + V K G W ++S+++K P+++ A+K K +Y+KDM Y ++
Sbjct: 107 EQRPIIKAQNP-SLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFYRKKG 165
Query: 63 AEGT 66
+ G+
Sbjct: 166 SGGS 169
>SGD|S000004676 [details] [associations]
symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
"mitochondrial DNA packaging" evidence=IMP] [GO:0000001
"mitochondrion inheritance" evidence=IMP] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Uniprot:Q02486
Length = 183
Score = 98 (39.6 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 20/62 (32%), Positives = 39/62 (62%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAD-KAPYVAKAEKRKVEYEKDMKNYN 59
+++ R Q+ K++P + A + K GEKW+++ EAD K Y+++ +K EY+K K ++
Sbjct: 54 LQDHRSQFVKENPTLRP-AEISKIAGEKWQNL-EADIKEKYISERKKLYSEYQKAKKEFD 111
Query: 60 RR 61
+
Sbjct: 112 EK 113
>FB|FBgn0038978 [details] [associations]
symbol:CG7045 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0000785 "chromatin" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 EMBL:AE014297 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 HSSP:Q05783 OrthoDB:EOG4MCVGR
RefSeq:NP_651055.1 UniGene:Dm.1280 ProteinModelPortal:Q9VCZ5
SMR:Q9VCZ5 MINT:MINT-1649734 STRING:Q9VCZ5 PRIDE:Q9VCZ5
EnsemblMetazoa:FBtr0084258 GeneID:42650 KEGG:dme:Dmel_CG7045
UCSC:CG7045-RA FlyBase:FBgn0038978 InParanoid:Q9VCZ5
PhylomeDB:Q9VCZ5 GenomeRNAi:42650 NextBio:829878
ArrayExpress:Q9VCZ5 Bgee:Q9VCZ5 Uniprot:Q9VCZ5
Length = 126
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
R+ K +HP + SV V GGE W++M++ DK + A EY++ +K +N
Sbjct: 24 RKHIKAEHP-DFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEKLKQWN 77
>UNIPROTKB|F1M607 [details] [associations]
symbol:F1M607 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
Length = 211
Score = 97 (39.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V + GE W + + DK P KA K K +YEKD+ Y +
Sbjct: 104 EYRPKIKGEHP-GLSIGDVARKLGEMWNNTAADDKQP-CEKAAKLKEKYEKDIAAY---R 158
Query: 63 AEGTKP 68
A+G KP
Sbjct: 159 AKG-KP 163
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K ++P S+ + K GE WK + + K + KAE+ K +YEK MK Y
Sbjct: 561 RERIKSENP-GISITEISKKAGEMWKQLGKDKKEEWDKKAEEAKRQYEKAMKEY 613
>UNIPROTKB|Q32L34 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9913
"Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
NextBio:20877839 Uniprot:Q32L34
Length = 194
Score = 94 (38.1 bits), Expect = 0.00016, P = 0.00016
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 4 FREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
+R ++K+ P + EKW+S+S+ +KA Y A A+ K Y+++M NY R+
Sbjct: 23 YRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNYFGRR 82
Query: 63 AEGTK 67
+ K
Sbjct: 83 KKRRK 87
Score = 92 (37.4 bits), Expect = 0.00027, P = 0.00027
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 7 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66
Q K ++P + SV V KA G+ W + ++ DK PY +A + +Y +++ Y R Q
Sbjct: 110 QLKSENP-SWSVVQVAKASGKMWSAKTDVDKQPYEQRAALLRAKYREELSVY-RNQFNAR 167
Query: 67 K 67
K
Sbjct: 168 K 168
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E REQ + HP + + K G +W + +K Y+ +AE+ K +Y K+++ Y +
Sbjct: 81 LNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQ 139
Query: 61 RQA 63
+A
Sbjct: 140 SEA 142
>RGD|2319002 [details] [associations]
symbol:LOC100365478 "high-mobility group box 1-like"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:2319002 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
IPI:IPI00958625 Ensembl:ENSRNOT00000062071 Uniprot:F1LWU2
Length = 186
Score = 92 (37.4 bits), Expect = 0.00024, P = 0.00024
Identities = 27/66 (40%), Positives = 33/66 (50%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
+ R + K HP S+ V K GE W S DK P KA K K YEKD+ Y +
Sbjct: 106 DHRPKIKGKHP-GLSIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKETYEKDIAAY---R 161
Query: 63 AEGTKP 68
A+G KP
Sbjct: 162 AKG-KP 166
Score = 88 (36.0 bits), Expect = 0.00069, P = 0.00069
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 6 EQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
E++KK HP + + + K E+WK+M + Y A+ K +E++MK Y + E
Sbjct: 24 EEHKKQHPDASVNFSEFSKKCSERWKTMCAKENGKYEDMAKADKAHHEREMKTYILPKGE 83
Query: 65 GTK 67
K
Sbjct: 84 TKK 86
>UNIPROTKB|B3DLD3 [details] [associations]
symbol:sox18 "Transcription factor Sox-18" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007507 "heart development" evidence=ISS] [GO:0030178 "negative
regulation of Wnt receptor signaling pathway" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
GO:GO:0006355 GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270 CTD:54345
EMBL:BC167402 RefSeq:NP_001123409.1 UniGene:Str.78926
GeneID:100170185 KEGG:xtr:100170185 Xenbase:XB-GENE-483233
Uniprot:B3DLD3
Length = 362
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R++ + +P + A + K G+ WK++S A+K P+V +AE+ +V++ +D NY R
Sbjct: 83 RKRLAQQNPDLHN-AVLSKMLGQSWKNLSSAEKRPFVEEAERLRVQHLQDHPNYKYR 138
>UNIPROTKB|O42342 [details] [associations]
symbol:sox7 "Transcription factor Sox-7" species:8355
"Xenopus laevis" [GO:0001706 "endoderm formation" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0007507 "heart development"
evidence=IMP] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0044212 "transcription regulatory region
DNA binding" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048793 "pronephros development" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
GO:GO:0030154 GO:GO:0043565 GO:GO:0045944 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0030178 GO:GO:0048793 GO:GO:0001706 HSSP:P48431
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270 CTD:83595
EMBL:D83649 RefSeq:NP_001079337.1 UniGene:Xl.1241
ProteinModelPortal:O42342 SMR:O42342 GeneID:378665 KEGG:xla:378665
Xenbase:XB-GENE-865761 Uniprot:O42342
Length = 362
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + K G+ WK++S A K PYV +AE+ +V++ +D NY R
Sbjct: 70 AELSKMLGKSWKALSPAQKRPYVEEAERLRVQHMQDYPNYKYR 112
>UNIPROTKB|Q28GD5 [details] [associations]
symbol:sox7 "Transcription factor Sox-7" species:8364
"Xenopus (Silurana) tropicalis" [GO:0001706 "endoderm formation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0007507
"heart development" evidence=ISS] [GO:0043565 "sequence-specific
DNA binding" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISS] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0048793 "pronephros development" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007507
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0001570 GO:GO:0048793 GO:GO:0001706 eggNOG:NOG242943
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
GeneTree:ENSGT00670000097649 KO:K09270 HOGENOM:HOG000069999
CTD:83595 OrthoDB:EOG447FTC EMBL:CR761431 EMBL:BC170859
RefSeq:NP_001016326.1 UniGene:Str.66419 ProteinModelPortal:Q28GD5
SMR:Q28GD5 STRING:Q28GD5 Ensembl:ENSXETT00000001530 GeneID:549080
KEGG:xtr:549080 Xenbase:XB-GENE-488067 OMA:SFECSAG Bgee:Q28GD5
Uniprot:Q28GD5
Length = 362
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + K G+ WK++S A K PYV +AE+ +V++ +D NY R
Sbjct: 70 AELSKMLGKSWKALSPAQKRPYVEEAERLRVQHMQDYPNYKYR 112
>DICTYBASE|DDB_G0270260 [details] [associations]
symbol:nhp6 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006325 "chromatin organization"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
OMA:ERVKNAN Uniprot:Q55C24
Length = 141
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
++ R K HP N S +G G++W +S DK Y A + K +E + KNY+ +
Sbjct: 65 KDHRSVIKNSHP-NCSFGEIGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKKNYDEK 123
>UNIPROTKB|J3KT85 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
Uniprot:J3KT85
Length = 101
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+Q K +P K + +GK G W+ +++ +K Y+ + E K+EY + MK Y+ A
Sbjct: 12 DQVKASNPDLK-LWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPA 68
>UNIPROTKB|J3QR61 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000580654
Uniprot:J3QR61
Length = 153
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+Q K +P K + +GK G W+ +++ +K Y+ + E K+EY + MK Y+ A
Sbjct: 64 DQVKASNPDLK-LWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPA 120
>RGD|1583212 [details] [associations]
symbol:LOC685091 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001062256 Ncbi:XP_001062256
Length = 203
Score = 92 (37.4 bits), Expect = 0.00031, P = 0.00031
Identities = 27/66 (40%), Positives = 33/66 (50%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
+ R + K HP S+ V K GE W S DK P KA K K YEKD+ Y +
Sbjct: 114 DHRPKIKGKHP-GLSIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKETYEKDIAAY---R 169
Query: 63 AEGTKP 68
A+G KP
Sbjct: 170 AKG-KP 174
Score = 88 (36.0 bits), Expect = 0.00087, P = 0.00087
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 6 EQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
E++KK HP + + + K E+WK+M + Y A+ K +E++MK Y + E
Sbjct: 32 EEHKKQHPDASVNFSEFSKKCSERWKTMCAKENGKYEDMAKADKAHHEREMKTYILPKGE 91
Query: 65 GTK 67
K
Sbjct: 92 TKK 94
>UNIPROTKB|D4A535 [details] [associations]
symbol:D4A535 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00567139 Ensembl:ENSRNOT00000049646 Uniprot:D4A535
Length = 204
Score = 92 (37.4 bits), Expect = 0.00031, P = 0.00031
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+ + K +HP S+ V K GE W + + DK PY +A K K + EKD+ Y +
Sbjct: 102 EYCPKIKDEHP-GLSIGDVTKKLGETWSNTAVNDKQPYEKEAAKLKEKCEKDIAAY---R 157
Query: 63 AEGTKP 68
A+G KP
Sbjct: 158 AKG-KP 162
>UNIPROTKB|Q8WW32 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
Length = 186
Score = 91 (37.1 bits), Expect = 0.00031, P = 0.00031
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 4 FREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+R ++K+ P + EKW+S+S+ +KA Y A A+ K Y+++M NY
Sbjct: 23 YRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNY 78
Score = 89 (36.4 bits), Expect = 0.00053, P = 0.00053
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 7 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66
Q K+++P N SV V KA G+ W + ++ +K PY + + +Y ++++ Y R+Q
Sbjct: 110 QLKRENP-NWSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELY-RKQCNAR 167
Query: 67 K 67
K
Sbjct: 168 K 168
>POMBASE|SPBC28F2.11 [details] [associations]
symbol:SPBC28F2.11 "HMG box protein" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0043066 "negative regulation of
apoptotic process" evidence=IGI] InterPro:IPR009071
PomBase:SPBC28F2.11 GO:GO:0005794 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 EMBL:CU329671 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P63159
OrthoDB:EOG4RV61X PIR:T40054 RefSeq:NP_595672.1
ProteinModelPortal:Q9USU7 STRING:Q9USU7 EnsemblFungi:SPBC28F2.11.1
GeneID:2540337 KEGG:spo:SPBC28F2.11 eggNOG:NOG246329
NextBio:20801465 Uniprot:Q9USU7
Length = 310
Score = 95 (38.5 bits), Expect = 0.00034, P = 0.00034
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 14 KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
K+ V V KA EKW S+SE D+ Y +A K + YE++M YN
Sbjct: 142 KSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKLREAYEEEMAAYN 187
>UNIPROTKB|A4QNG3 [details] [associations]
symbol:sox14 "Transcription factor Sox-14" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007399 "nervous system development" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007399
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
GeneTree:ENSGT00690000101940 CTD:8403 eggNOG:NOG302715
HOGENOM:HOG000231647 KO:K09267 OMA:LGCPSQH EMBL:AM922298
EMBL:BC135637 RefSeq:NP_001093703.1 UniGene:Str.72434
ProteinModelPortal:A4QNG3 SMR:A4QNG3 STRING:A4QNG3
Ensembl:ENSXETT00000049107 GeneID:100101715 KEGG:xtr:100101715
Xenbase:XB-GENE-485370 Bgee:A4QNG3 Uniprot:A4QNG3
Length = 239
Score = 93 (37.8 bits), Expect = 0.00035, P = 0.00035
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R + +++PK + + + K G +WK +SEA+K PY+ +A++ + ++ K+ +Y R
Sbjct: 23 RRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYR 78
>UNIPROTKB|B0ZTE2 [details] [associations]
symbol:sox14 "Transcription factor Sox-14" species:8355
"Xenopus laevis" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0007399 "nervous
system development" evidence=IEP] [GO:0043565 "sequence-specific
DNA binding" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 KO:K09267 EMBL:EU403425
RefSeq:NP_001165685.1 UniGene:Xl.85736 ProteinModelPortal:B0ZTE2
SMR:B0ZTE2 GeneID:100337614 KEGG:xla:100337614
Xenbase:XB-GENE-6458188 Uniprot:B0ZTE2
Length = 239
Score = 93 (37.8 bits), Expect = 0.00035, P = 0.00035
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R + +++PK + + + K G +WK +SEA+K PY+ +A++ + ++ K+ +Y R
Sbjct: 23 RRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYR 78
>UNIPROTKB|Q9W7R6 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 GO:GO:0006351 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AB026622 EMBL:AF193760 EMBL:M86326 IPI:IPI00585113 PIR:I50196
RefSeq:NP_990092.1 UniGene:Gga.286 ProteinModelPortal:Q9W7R6
SMR:Q9W7R6 STRING:Q9W7R6 GeneID:395526 KEGG:gga:395526 CTD:8403
eggNOG:NOG302715 HOGENOM:HOG000231647 HOVERGEN:HBG105618
InParanoid:Q9W7R6 KO:K09267 OrthoDB:EOG47D9H0 NextBio:20815603
InterPro:IPR022097 Pfam:PF12336 Uniprot:Q9W7R6
Length = 240
Score = 93 (37.8 bits), Expect = 0.00035, P = 0.00035
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R + +++PK + + + K G +WK +SEA+K PY+ +A++ + ++ K+ +Y R
Sbjct: 23 RRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYR 78
>UNIPROTKB|O95416 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007399
"nervous system development" evidence=TAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0007399 EMBL:CH471052 GO:GO:0043565 GO:GO:0006351
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:8403 eggNOG:NOG302715 HOGENOM:HOG000231647
HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
Pfam:PF12336 OMA:LGCPSQH EMBL:AF107043 EMBL:AJ006230 EMBL:AF193436
EMBL:AK314127 EMBL:BC106729 EMBL:BC106730 EMBL:AF032451
IPI:IPI00030676 RefSeq:NP_004180.1 UniGene:Hs.248184
ProteinModelPortal:O95416 SMR:O95416 STRING:O95416
PhosphoSite:O95416 PRIDE:O95416 Ensembl:ENST00000306087 GeneID:8403
KEGG:hsa:8403 UCSC:uc003erm.2 GeneCards:GC03P137483 HGNC:HGNC:11193
MIM:604747 neXtProt:NX_O95416 PharmGKB:PA36030 InParanoid:O95416
PhylomeDB:O95416 GenomeRNAi:8403 NextBio:31446 Bgee:O95416
CleanEx:HS_SOX14 Genevestigator:O95416 GermOnline:ENSG00000168875
Uniprot:O95416
Length = 240
Score = 93 (37.8 bits), Expect = 0.00035, P = 0.00035
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R + +++PK + + + K G +WK +SEA+K PY+ +A++ + ++ K+ +Y R
Sbjct: 23 RRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYR 78
>UNIPROTKB|P61259 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9541
"Macaca fascicularis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG105618
InterPro:IPR022097 Pfam:PF12336 EMBL:AB063098
ProteinModelPortal:P61259 SMR:P61259 Uniprot:P61259
Length = 240
Score = 93 (37.8 bits), Expect = 0.00035, P = 0.00035
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R + +++PK + + + K G +WK +SEA+K PY+ +A++ + ++ K+ +Y R
Sbjct: 23 RRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYR 78
>MGI|MGI:98362 [details] [associations]
symbol:Sox14 "SRY-box containing gene 14" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
MGI:MGI:98362 Pfam:PF00505 GO:GO:0005634 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 eggNOG:NOG302715
HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 OMA:LGCPSQH
EMBL:AF193437 EMBL:AF193435 EMBL:AF182357 EMBL:Z18963
IPI:IPI00929882 PIR:S30244 RefSeq:NP_035570.1 UniGene:Mm.261595
UniGene:Mm.484077 ProteinModelPortal:Q04892 SMR:Q04892
STRING:Q04892 PhosphoSite:Q04892 PRIDE:Q04892
Ensembl:ENSMUST00000054819 GeneID:20669 KEGG:mmu:20669
InParanoid:Q04892 NextBio:299141 Bgee:Q04892 CleanEx:MM_SOX14
Genevestigator:Q04892 Uniprot:Q04892
Length = 240
Score = 93 (37.8 bits), Expect = 0.00035, P = 0.00035
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R + +++PK + + + K G +WK +SEA+K PY+ +A++ + ++ K+ +Y R
Sbjct: 23 RRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYR 78
>RGD|1309654 [details] [associations]
symbol:Sox14 "SRY (sex determining region Y)-box 14"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
Pfam:PF00505 RGD:1309654 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH473954 CTD:8403
HOVERGEN:HBG105618 KO:K09267 OMA:LGCPSQH EMBL:EU853677
IPI:IPI00870866 RefSeq:NP_001100320.1 UniGene:Rn.141574 SMR:B7SZV3
GeneID:300954 KEGG:rno:300954 UCSC:RGD:1309654 NextBio:647780
Genevestigator:B7SZV3 Uniprot:B7SZV3
Length = 240
Score = 93 (37.8 bits), Expect = 0.00035, P = 0.00035
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R + +++PK + + + K G +WK +SEA+K PY+ +A++ + ++ K+ +Y R
Sbjct: 23 RRKMAQENPKMHN-SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYR 78
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E REQ + HP + + K G +W + A+K Y+ +AE+ K +Y K+++ Y +
Sbjct: 81 LNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQ 139
Query: 61 RQA 63
+A
Sbjct: 140 SEA 142
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 95 (38.5 bits), Expect = 0.00036, P = 0.00036
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E REQ + HP + + K G +W + A+K Y+ +AE+ K +Y K+++ Y +
Sbjct: 81 LNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQ 139
Query: 61 RQA 63
+A
Sbjct: 140 SEA 142
>UNIPROTKB|Q8AXQ4 [details] [associations]
symbol:sox12 "Transcription factor Sox-12" species:8355
"Xenopus laevis" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005634 "nucleus"
evidence=IC] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P48431 KO:K09268 CTD:6666 EMBL:AB086020 EMBL:BC169671
EMBL:BC169697 RefSeq:NP_001079045.1 UniGene:Xl.21610
ProteinModelPortal:Q8AXQ4 GeneID:373574 KEGG:xla:373574
Xenbase:XB-GENE-864958 Uniprot:Q8AXQ4
Length = 244
Score = 93 (37.8 bits), Expect = 0.00036, P = 0.00036
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
N A + ++ G++WK + + DK PYV +AE+ ++++ D NY R
Sbjct: 55 NMHNADISRSLGQRWKLLQDTDKIPYVREAERLRLKHMADYPNYKYR 101
>FB|FBgn0038979 [details] [associations]
symbol:CG7046 species:7227 "Drosophila melanogaster"
[GO:0000785 "chromatin" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 FlyBase:FBgn0038979 EMBL:AY070828
HSSP:Q05783 ProteinModelPortal:Q8T957 SMR:Q8T957 STRING:Q8T957
PRIDE:Q8T957 eggNOG:NOG253857 InParanoid:Q8T957 OrthoDB:EOG4MCVGR
ArrayExpress:Q8T957 Bgee:Q8T957 Uniprot:Q8T957
Length = 138
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
R+ + +HP + SV V GGE W++M++ K + A K EY++ ++ +N
Sbjct: 24 RKNIRAEHP-DFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEKLEKWN 77
>UNIPROTKB|P40670 [details] [associations]
symbol:P40670 "SRY-related protein CH31" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:M86323 IPI:IPI00575625
PIR:I50192 ProteinModelPortal:P40670 SMR:P40670 STRING:P40670
InParanoid:P40670 Uniprot:P40670
Length = 54
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 10 KDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
+++PK + + + K G +WK +SEA+K P++ +A++ + + K+ NY R
Sbjct: 3 QENPKMHN-SEISKRLGAEWKLLSEAEKRPFIDEAKRLRAMHMKEYPNYKYR 53
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 91 (37.1 bits), Expect = 0.00046, P = 0.00046
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E REQ + HP + + K G +W + +K Y+ +AE+ K +Y K+++ Y +
Sbjct: 81 LNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQ 139
Query: 61 RQA 63
+A
Sbjct: 140 SEA 142
>ZFIN|ZDB-GENE-040718-186 [details] [associations]
symbol:sox1a "SRY-box containing gene 1a"
species:7955 "Danio rerio" [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IC] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-040718-186
GO:GO:0007275 GO:GO:0051091 GO:GO:0003677 GO:GO:0006351
GO:GO:0005667 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 eggNOG:NOG321816 GeneTree:ENSGT00690000101940
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
EMBL:AB242327 EMBL:CR392332 EMBL:BC076326 EMBL:BC096992
IPI:IPI00492442 RefSeq:NP_001002483.1 UniGene:Dr.6453
ProteinModelPortal:Q6DGL6 SMR:Q6DGL6 STRING:Q6DGL6
Ensembl:ENSDART00000102021 GeneID:436756 KEGG:dre:436756 CTD:436756
HOVERGEN:HBG105663 InParanoid:Q6DGL6 OMA:MHRYDMT OrthoDB:EOG40K80R
NextBio:20831193 Bgee:Q6DGL6 Uniprot:Q6DGL6
Length = 336
Score = 94 (38.1 bits), Expect = 0.00050, P = 0.00050
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + +++PK + + + K G +WK MSEA+K P++ +A++ + + K+ +Y R
Sbjct: 52 RRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRR 110
Query: 65 GTK 67
TK
Sbjct: 111 KTK 113
>ZFIN|ZDB-GENE-060322-5 [details] [associations]
symbol:sox1b "SRY-box containing gene 1b"
species:7955 "Danio rerio" [GO:0005667 "transcription factor
complex" evidence=IC] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 ZFIN:ZDB-GENE-060322-5 GO:GO:0007275 GO:GO:0051091
GO:GO:0003677 GO:GO:0006351 GO:GO:0005667 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 eggNOG:NOG321816
GeneTree:ENSGT00690000101940 HOGENOM:HOG000231647 KO:K09267
InterPro:IPR022097 Pfam:PF12336 OrthoDB:EOG40K80Q
HOVERGEN:HBG105663 EMBL:AB242328 EMBL:AL929216 EMBL:BC154495
IPI:IPI00498420 RefSeq:NP_001032751.1 UniGene:Dr.52415
ProteinModelPortal:Q2Z1R2 SMR:Q2Z1R2 STRING:Q2Z1R2 PRIDE:Q2Z1R2
Ensembl:ENSDART00000010894 GeneID:562710 KEGG:dre:562710 CTD:562710
InParanoid:Q2Z1R2 OMA:AMSTTHA NextBio:20884544 Bgee:Q2Z1R2
Uniprot:Q2Z1R2
Length = 340
Score = 94 (38.1 bits), Expect = 0.00051, P = 0.00051
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + +++PK + + + K G +WK MSEA+K P++ +A++ + + K+ +Y R
Sbjct: 52 RRKMAQENPKMHN-SEISKRLGAEWKLMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRR 110
Query: 65 GTK 67
TK
Sbjct: 111 KTK 113
>FB|FBgn0010278 [details] [associations]
symbol:Ssrp "Structure specific recognition protein"
species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
[GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
"nucleolus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
disassembly" evidence=IMP] [GO:0035101 "FACT complex"
evidence=IDA;TAS] [GO:0043621 "protein self-association"
evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
[GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
Length = 723
Score = 98 (39.6 bits), Expect = 0.00054, P = 0.00054
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ + RE K+++P K V + K GGE WK + DK+ + A K K Y +M+NY +
Sbjct: 566 LNDTRESIKRENPGIK-VTEIAKKGGEMWKELK--DKSKWEDAAAKDKQRYHDEMRNY-K 621
Query: 61 RQAEG 65
+A G
Sbjct: 622 PEAGG 626
>ZFIN|ZDB-GENE-011026-1 [details] [associations]
symbol:sox32 "SRY-box containing gene 32"
species:7955 "Danio rerio" [GO:0001706 "endoderm formation"
evidence=IDA;IMP] [GO:0003007 "heart morphogenesis" evidence=IMP]
[GO:0007498 "mesoderm development" evidence=IDA] [GO:0001885
"endothelial cell development" evidence=IMP] [GO:0035050 "embryonic
heart tube development" evidence=IMP] [GO:0007368 "determination of
left/right symmetry" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IGI;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=IGI;IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0007492
"endoderm development" evidence=IMP] [GO:0007493 "endodermal cell
fate determination" evidence=IMP] [GO:0042074 "cell migration
involved in gastrulation" evidence=IMP] [GO:0003262 "endocardial
progenitor cell migration to the midline involved in heart field
formation" evidence=IMP] [GO:0061035 "regulation of cartilage
development" evidence=IGI;IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-011026-1 GO:GO:0005634 GO:GO:0045893 GO:GO:0007498
GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007368 GO:GO:0042074
GO:GO:0001885 GO:GO:0035050 GO:GO:0007493 GO:GO:0061035 HSSP:P48432
GO:GO:0003262 EMBL:BC097087 EMBL:AF362749 IPI:IPI00494054
RefSeq:NP_571926.1 UniGene:Dr.133216 SMR:Q90Z46 STRING:Q90Z46
GeneID:116990 KEGG:dre:116990 CTD:116990 HOVERGEN:HBG098276
InParanoid:Q90Z46 NextBio:20796959 Uniprot:Q90Z46
Length = 307
Score = 93 (37.8 bits), Expect = 0.00056, P = 0.00056
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
+ K G+ WK+MS ADK PY+ +AE+ ++++ D NY R
Sbjct: 100 LSKILGKTWKAMSLADKRPYMQEAERLRIQHTIDYPNYKYR 140
>UNIPROTKB|Q90ZH7 [details] [associations]
symbol:sox18-b "Transcription factor Sox-18B" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007507
"heart development" evidence=IMP] [GO:0030178 "negative regulation
of Wnt receptor signaling pathway" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007507 GO:GO:0006355
GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178 HSSP:P48431
InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516 KO:K09270
EMBL:AB052693 EMBL:BC072123 RefSeq:NP_001082104.1 UniGene:Xl.11959
ProteinModelPortal:Q90ZH7 SMR:Q90ZH7 GeneID:398227 KEGG:xla:398227
CTD:398227 Xenbase:XB-GENE-6251810 Uniprot:Q90ZH7
Length = 361
Score = 94 (38.1 bits), Expect = 0.00056, P = 0.00056
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R++ + +P + A + K G+ WK+++ A+K P+V +AE+ +V++ +D NY R
Sbjct: 81 RKRLAQQNPDLHN-AVLSKMLGQSWKNLTSAEKRPFVEEAERLRVQHLQDHPNYKYR 136
>UNIPROTKB|F1RXE6 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 GeneTree:ENSGT00390000003628
EMBL:CU856162 Ensembl:ENSSSCT00000019017 OMA:HANINAK Uniprot:F1RXE6
Length = 194
Score = 89 (36.4 bits), Expect = 0.00060, P = 0.00060
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+Q K +P K + +GK G W+ +++ +K Y+ + E K+EY + MK Y+ A
Sbjct: 82 DQVKASNPDLK-LWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPA 138
>UNIPROTKB|F6RRS7 [details] [associations]
symbol:SOX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072091 "regulation of stem cell proliferation"
evidence=IEA] [GO:0061028 "establishment of endothelial barrier"
evidence=IEA] [GO:0060956 "endocardial cell differentiation"
evidence=IEA] [GO:0060836 "lymphatic endothelial cell
differentiation" evidence=IEA] [GO:0060214 "endocardium formation"
evidence=IEA] [GO:0048866 "stem cell fate specification"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043534 "blood vessel endothelial cell migration"
evidence=IEA] [GO:0035050 "embryonic heart tube development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0001946 "lymphangiogenesis" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0045892 GO:GO:0043565 GO:GO:0001701 GO:GO:0045944
GO:GO:0003700 GO:GO:0001525 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0001942
GO:GO:0001946 GO:GO:0060836 GO:GO:0043534 GO:GO:0001570
GO:GO:0048469 GO:GO:0035050 GO:GO:0072091 GO:GO:0060956
GO:GO:0060214 GO:GO:0061028 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 GeneTree:ENSGT00670000097649 GO:GO:0048866
OMA:YLNCSRT EMBL:DAAA02036216 EMBL:DAAA02036215 IPI:IPI00717042
Ensembl:ENSBTAT00000015485 Uniprot:F6RRS7
Length = 388
Score = 94 (38.1 bits), Expect = 0.00063, P = 0.00063
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R++ + +P + A + K G+ WK +S A+K P+V +AE+ +V++ +D NY R
Sbjct: 99 RKRLAQQNPDLHN-AVLSKMLGKAWKELSPAEKRPFVEEAERLRVQHLRDHPNYKYR 154
>ZFIN|ZDB-GENE-041008-209 [details] [associations]
symbol:ssrp1b "structure specific recognition
protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
Uniprot:F6NLJ7
Length = 703
Score = 97 (39.2 bits), Expect = 0.00066, P = 0.00066
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R++ K ++P S+ + K GE WK + + K + KAE+ K EY++ M+ Y R++
Sbjct: 558 RDRIKSENP-GISITEISKKAGEMWKQLGKDKKEEWDGKAEEAKKEYDRAMREY--RESG 614
Query: 65 G 65
G
Sbjct: 615 G 615
>UNIPROTKB|P40665 [details] [associations]
symbol:P40665 "SRY-related protein CH1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:M86320 IPI:IPI00574315
PIR:I50190 ProteinModelPortal:P40665 SMR:P40665 STRING:P40665
eggNOG:NOG321816 InParanoid:P40665 OrthoDB:EOG4MPHQV Uniprot:P40665
Length = 54
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 11 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
++PK + + + K G +WK +SEA+K P++ +A++ + + K+ +Y R
Sbjct: 4 ENPKMHN-SEISKRLGAEWKQLSEAEKRPFIDEAKRHRAMHMKEYPDYKYR 53
>UNIPROTKB|P55863 [details] [associations]
symbol:sox3-a "Transcription factor Sox-3-A" species:8355
"Xenopus laevis" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP;IDA] [GO:0001704
"formation of primary germ layer" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0008013 "beta-catenin binding" evidence=IDA] [GO:0030514
"negative regulation of BMP signaling pathway" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IDA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0005737 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0090090 GO:GO:0008013
GO:GO:0030514 GO:GO:0001704 KO:K09267 InterPro:IPR022097
Pfam:PF12336 HOVERGEN:HBG105663 EMBL:AB000825 EMBL:Y07542
EMBL:BC072222 PIR:S22946 RefSeq:NP_001084148.1 UniGene:Xl.22
ProteinModelPortal:P55863 SMR:P55863 GeneID:399335 KEGG:xla:399335
CTD:6658 Xenbase:XB-GENE-484819 Uniprot:P55863
Length = 309
Score = 92 (37.4 bits), Expect = 0.00073, P = 0.00073
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + +++PK + + + K G WK +S++DK P++ +A++ + + KD +Y R
Sbjct: 55 RRKMAQENPKMHN-SEISKRLGADWKLLSDSDKRPFIDEAKRLRAVHMKDYPDYKYRPRR 113
Query: 65 GTK 67
TK
Sbjct: 114 KTK 116
>ZFIN|ZDB-GENE-080725-1 [details] [associations]
symbol:sox18 "SRY-box containing gene 18"
species:7955 "Danio rerio" [GO:0001570 "vasculogenesis"
evidence=IGI] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-080725-1 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001570 InterPro:IPR021934
Pfam:PF12067 PROSITE:PS51516 GeneTree:ENSGT00670000097649 KO:K09270
CTD:54345 EMBL:CR457456 IPI:IPI00632675 RefSeq:XP_001337702.1
UniGene:Dr.88332 Ensembl:ENSDART00000132992 GeneID:797246
KEGG:dre:797246 NextBio:20932931 Bgee:E7F9I2 Uniprot:E7F9I2
Length = 431
Score = 94 (38.1 bits), Expect = 0.00073, P = 0.00073
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKP 68
A + K G+ WK++S DK P+V +AE+ ++++ +D NY R +P
Sbjct: 122 AVLSKMLGQSWKALSTLDKRPFVEEAERLRLQHLQDHPNYKYRPRRKKQP 171
>ZFIN|ZDB-GENE-051113-268 [details] [associations]
symbol:sox14 "SRY-box containing gene 14"
species:7955 "Danio rerio" [GO:0021854 "hypothalamus development"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 ZFIN:ZDB-GENE-051113-268 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
GeneTree:ENSGT00690000101940 HSSP:P48431 CTD:8403 eggNOG:NOG302715
HOGENOM:HOG000231647 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
Pfam:PF12336 EMBL:BC108033 IPI:IPI00511312 RefSeq:NP_001032769.1
UniGene:Dr.52424 ProteinModelPortal:Q32PP9 SMR:Q32PP9 STRING:Q32PP9
Ensembl:ENSDART00000104532 GeneID:557661 KEGG:dre:557661
InParanoid:Q32PP9 OMA:LGCPSQH NextBio:20882094 Bgee:Q32PP9
Uniprot:Q32PP9
Length = 238
Score = 90 (36.7 bits), Expect = 0.00075, P = 0.00074
Identities = 16/57 (28%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R + +++PK + + + K G +WK +SE++K PY+ +A++ + ++ K+ +Y R
Sbjct: 23 RRKMAQENPKMHN-SEISKRLGAEWKLLSESEKRPYIDEAKRLRAQHMKEHPDYKYR 78
>UNIPROTKB|F1MIK5 [details] [associations]
symbol:SOX1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0021884 "forebrain neuron development" evidence=IEA]
[GO:0021521 "ventral spinal cord interneuron specification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0002089 "lens
morphogenesis in camera-type eye" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0001046 "core promoter
sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0001046 GeneTree:ENSGT00690000101940
KO:K09267 InterPro:IPR022097 Pfam:PF12336 OMA:MHRYDMT CTD:6656
EMBL:DAAA02034934 IPI:IPI00693232 RefSeq:XP_002692040.1
RefSeq:XP_875555.1 Ensembl:ENSBTAT00000052847 GeneID:618135
KEGG:bta:618135 NextBio:20901019 Uniprot:F1MIK5
Length = 369
Score = 93 (37.8 bits), Expect = 0.00075, P = 0.00075
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + +++PK + + + K G +WK MSEA+K P++ +A++ + + K+ +Y R
Sbjct: 61 RRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRR 119
Query: 65 GTK 67
TK
Sbjct: 120 KTK 122
>UNIPROTKB|A6PVD3 [details] [associations]
symbol:SOX10 "Transcription factor SOX-10" species:9606
"Homo sapiens" [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA]
[GO:0000980 "RNA polymerase II distal enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0002052 "positive regulation of
neuroblast proliferation" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007422 "peripheral nervous system development" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0014015 "positive regulation of gliogenesis" evidence=IEA]
[GO:0030318 "melanocyte differentiation" evidence=IEA] [GO:0031315
"extrinsic to mitochondrial outer membrane" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048469 "cell maturation" evidence=IEA] [GO:0048484 "enteric
nervous system development" evidence=IEA] [GO:0048546 "digestive
tract morphogenesis" evidence=IEA] [GO:0048589 "developmental
growth" evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
evidence=IEA] [GO:0048863 "stem cell differentiation" evidence=IEA]
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043066 GO:GO:0001755 GO:GO:0001701
GO:GO:0045944 GO:GO:0048863 GO:GO:0007422 GO:GO:0003682
GO:GO:0003705 GO:GO:0000980 GO:GO:0000978 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048589
GO:GO:0090090 GO:GO:0030318 GO:GO:0048709 GO:GO:0031315
GO:GO:0048484 GO:GO:0002052 GO:GO:0048546 GO:GO:0048469
EMBL:AL031587 GO:GO:0014015 HOVERGEN:HBG002061 InterPro:IPR022151
Pfam:PF12444 UniGene:Hs.376984 HGNC:HGNC:11190 IPI:IPI00908479
SMR:A6PVD3 STRING:A6PVD3 Ensembl:ENST00000427770 UCSC:uc010gxj.3
HOGENOM:HOG000070122 Uniprot:A6PVD3
Length = 213
Score = 89 (36.4 bits), Expect = 0.00075, P = 0.00075
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN---RRQAEG 65
A + K G+ W+ ++E+DK P++ +AE+ +++++KD +Y RR+ G
Sbjct: 132 AELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNG 181
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 92 (37.4 bits), Expect = 0.00076, P = 0.00076
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E REQ + HP + + K G +W + A+K Y+ +AEK K +Y K++ Y +
Sbjct: 81 LNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQ 139
Query: 61 RQA 63
+A
Sbjct: 140 SEA 142
>UNIPROTKB|O57401 [details] [associations]
symbol:SOX1 "Transcription factor SOX-1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P48432 KO:K09267 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 EMBL:AB011802 IPI:IPI00597708 RefSeq:NP_989664.1
UniGene:Gga.165 ProteinModelPortal:O57401 SMR:O57401 GeneID:374240
KEGG:gga:374240 CTD:6656 NextBio:20813736 Uniprot:O57401
Length = 373
Score = 93 (37.8 bits), Expect = 0.00076, P = 0.00076
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + +++PK + + + K G +WK MSEA+K P++ +A++ + + K+ +Y R
Sbjct: 63 RRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRR 121
Query: 65 GTK 67
TK
Sbjct: 122 KTK 124
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 92 (37.4 bits), Expect = 0.00076, P = 0.00076
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E REQ + HP + + K G +W + A+K Y+ +AEK K +Y K++ Y +
Sbjct: 81 LNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQ 139
Query: 61 RQA 63
+A
Sbjct: 140 SEA 142
>UNIPROTKB|Q90ZH9 [details] [associations]
symbol:sox17a-b "Transcription factor Sox-17-alpha-B"
species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007442 "hindgut morphogenesis" evidence=IMP] [GO:0007492
"endoderm development" evidence=IMP] [GO:0007494 "midgut
development" evidence=IMP] [GO:0008013 "beta-catenin binding"
evidence=ISS] [GO:0042074 "cell migration involved in gastrulation"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0016055
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 GO:GO:0007494
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0008013 GO:GO:0042074 GO:GO:0007492 GO:GO:0007442 HSSP:P48431
KO:K04495 InterPro:IPR021934 Pfam:PF12067 PROSITE:PS51516
EMBL:AB052691 EMBL:BC060350 RefSeq:NP_001083136.1 UniGene:Xl.11957
ProteinModelPortal:Q90ZH9 SMR:Q90ZH9 GeneID:398765 KEGG:xla:398765
CTD:398765 Xenbase:XB-GENE-6255435 Uniprot:Q90ZH9
Length = 377
Score = 93 (37.8 bits), Expect = 0.00077, P = 0.00077
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R++ + +P + A + K G+ WK++S A+K P+V +AE+ +V++ +D NY R
Sbjct: 73 RKRLAQQNPDLHN-AELSKMLGKSWKALSLAEKRPFVEEAERLRVQHMQDHPNYKYR 128
>UNIPROTKB|Q3KQ35 [details] [associations]
symbol:sox17a-a "Transcription factor Sox-17-alpha-A"
species:8355 "Xenopus laevis" [GO:0005634 "nucleus" evidence=IDA]
[GO:0007440 "foregut morphogenesis" evidence=IMP] [GO:0007442
"hindgut morphogenesis" evidence=IMP] [GO:0007492 "endoderm
development" evidence=IMP] [GO:0007494 "midgut development"
evidence=IMP] [GO:0008013 "beta-catenin binding" evidence=IDA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IDA] [GO:0042074 "cell migration involved in gastrulation"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0008285 GO:GO:0016055 GO:GO:0043565
GO:GO:0045944 GO:GO:0006351 GO:GO:0007494 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0090090
GO:GO:0008013 GO:GO:0042074 GO:GO:0007492 GO:GO:0007440
GO:GO:0007442 HSSP:P48431 EMBL:AJ001730 EMBL:BC106403 EMBL:AB052690
RefSeq:NP_001081631.1 UniGene:Xl.3831 ProteinModelPortal:Q3KQ35
SMR:Q3KQ35 GeneID:397966 KEGG:xla:397966 CTD:397966
Xenbase:XB-GENE-865067 KO:K04495 InterPro:IPR021934 Pfam:PF12067
PROSITE:PS51516 Uniprot:Q3KQ35
Length = 380
Score = 93 (37.8 bits), Expect = 0.00078, P = 0.00078
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R++ + +P + A + K G+ WKS++ A+K P+V +AE+ +V++ +D NY R
Sbjct: 76 RKRLAQQNPDLHN-AELSKMLGKSWKSLTLAEKRPFVEEAERLRVQHMQDHPNYKYR 131
>UNIPROTKB|O00570 [details] [associations]
symbol:SOX1 "Transcription factor SOX-1" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0002089 "lens
morphogenesis in camera-type eye" evidence=IEA] [GO:0021521
"ventral spinal cord interneuron specification" evidence=IEA]
[GO:0021884 "forebrain neuron development" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0001046 "core promoter sequence-specific DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:CH471085 GO:GO:0006325 GO:GO:0001046 eggNOG:NOG321816
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
HOVERGEN:HBG105663 OMA:MHRYDMT CTD:6656 EMBL:Y13436 EMBL:AL138691
IPI:IPI00012162 RefSeq:NP_005977.2 UniGene:Hs.202526
ProteinModelPortal:O00570 SMR:O00570 IntAct:O00570 STRING:O00570
PhosphoSite:O00570 PRIDE:O00570 Ensembl:ENST00000330949 GeneID:6656
KEGG:hsa:6656 UCSC:uc001vsb.1 GeneCards:GC13P112721 HGNC:HGNC:11189
MIM:602148 neXtProt:NX_O00570 PharmGKB:PA36026 InParanoid:O00570
OrthoDB:EOG4DFPQ1 PhylomeDB:O00570 GenomeRNAi:6656 NextBio:25947
Bgee:O00570 CleanEx:HS_SOX1 Genevestigator:O00570
GermOnline:ENSG00000182968 Uniprot:O00570
Length = 391
Score = 93 (37.8 bits), Expect = 0.00082, P = 0.00082
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + +++PK + + + K G +WK MSEA+K P++ +A++ + + K+ +Y R
Sbjct: 66 RRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRR 124
Query: 65 GTK 67
TK
Sbjct: 125 KTK 127
>UNIPROTKB|Q2PG84 [details] [associations]
symbol:sox1 "Transcription factor Sox-1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0007399
"nervous system development" evidence=IMP] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0051091
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 KO:K09267 InterPro:IPR022097
Pfam:PF12336 CTD:6656 EMBL:AB219572 EMBL:EF672727 EMBL:EF192051
EMBL:BC169643 RefSeq:NP_001089143.1 UniGene:Xl.55964
ProteinModelPortal:Q2PG84 SMR:Q2PG84 GeneID:734174 KEGG:xla:734174
Xenbase:XB-GENE-1018276 Uniprot:Q2PG84
Length = 393
Score = 93 (37.8 bits), Expect = 0.00082, P = 0.00082
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + +++PK + + + K G +WK MSEA+K P++ +A++ + + K+ +Y R
Sbjct: 49 RRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRR 107
Query: 65 GTK 67
TK
Sbjct: 108 KTK 110
>WB|WBGene00001973 [details] [associations]
symbol:hmg-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
Length = 689
Score = 96 (38.9 bits), Expect = 0.00083, P = 0.00083
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
R K+D ++ V K G KWKSMS DK + KA + K YE +MK Y +
Sbjct: 576 RNSMKED---GDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKK 628
>UNIPROTKB|A2TED3 [details] [associations]
symbol:sox1 "Transcription factor Sox-1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007399 "nervous system development" evidence=ISS] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007399
GO:GO:0051091 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 eggNOG:NOG321816
HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097 Pfam:PF12336
CTD:6656 EMBL:EF192052 EMBL:BC121846 EMBL:BC159121
RefSeq:NP_001074465.1 UniGene:Str.35422 ProteinModelPortal:A2TED3
SMR:A2TED3 STRING:A2TED3 GeneID:779569 KEGG:xtr:779569
Xenbase:XB-GENE-1018269 Uniprot:A2TED3
Length = 401
Score = 93 (37.8 bits), Expect = 0.00085, P = 0.00085
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + +++PK + + + K G +WK MSEA+K P++ +A++ + + K+ +Y R
Sbjct: 52 RRKMAQENPKMHN-SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRR 110
Query: 65 GTK 67
TK
Sbjct: 111 KTK 113
>FB|FBgn0030093 [details] [associations]
symbol:dalao "dalao" species:7227 "Drosophila melanogaster"
[GO:0003713 "transcription coactivator activity" evidence=IC]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035060 "brahma complex" evidence=NAS;IDA;IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IGI;IPI]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0006338
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0035060 HSSP:P07155 EMBL:AF348329 ProteinModelPortal:Q9BIW6
DIP:DIP-36731N IntAct:Q9BIW6 STRING:Q9BIW6 PRIDE:Q9BIW6
FlyBase:FBgn0030093 InParanoid:Q9BIW6 ArrayExpress:Q9BIW6
Bgee:Q9BIW6 Uniprot:Q9BIW6
Length = 749
Score = 96 (38.9 bits), Expect = 0.00092, P = 0.00092
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ K HP+ K + +GK G WK + E +K ++ + E K+EYEK +K Y++ A
Sbjct: 105 DSVKAKHPELK-LWELGKKIGAMWKLLPEDEKTEFIDEYEAEKLEYEKSLKAYHQTPA 161
>UNIPROTKB|P40671 [details] [associations]
symbol:P40671 "SRY-related protein CH32" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:M86324 IPI:IPI00597041
PIR:I50193 ProteinModelPortal:P40671 SMR:P40671 Uniprot:P40671
Length = 54
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 11 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
++PK + + + + G +WK +SEA+K PY+ +A++ + ++ K+ Y R
Sbjct: 4 ENPKMHN-SEISQRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEYPEYKYR 53
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 91 (37.1 bits), Expect = 0.00097, P = 0.00097
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E REQ + HP + + K G +W + +K Y+ +AE+ K +Y K+++ Y +
Sbjct: 81 LNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQ 139
Query: 61 RQA 63
+A
Sbjct: 140 SEA 142
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.304 0.122 0.338 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 98 70 0.00091 102 3 11 23 0.43 29
29 0.41 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 156
No. of states in DFA: 471 (50 KB)
Total size of DFA: 94 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.91u 0.10s 12.01t Elapsed: 00:00:01
Total cpu time: 11.92u 0.10s 12.02t Elapsed: 00:00:01
Start: Mon May 20 16:06:21 2013 End: Mon May 20 16:06:22 2013
WARNINGS ISSUED: 1