BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034314
(98 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 84/91 (92%), Gaps = 2/91 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FRE YKK+HPKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN+
Sbjct: 48 MEDFRETYKKEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNK 107
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGS 91
+ EG P+E+EES+KS+SEVNDEDD E+GS
Sbjct: 108 KLEEG--PKEDEESDKSVSEVNDEDDAEDGS 136
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/82 (84%), Positives = 78/82 (95%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFREQYKKDHPKNKSVAAVGKAGG+KWKS+SEA+KAPYVAKAEKRKVEYEK+MK YN+
Sbjct: 46 MEEFREQYKKDHPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYEKNMKAYNK 105
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
RQAEG K +E+ ES+KS+SEVN
Sbjct: 106 RQAEGPK-DEDVESDKSVSEVN 126
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 83/91 (91%), Gaps = 2/91 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR YK++HPKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN+
Sbjct: 46 MEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNK 105
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGS 91
+ EG P+E+EES+KS+SEVNDEDD E+GS
Sbjct: 106 KLEEG--PKEDEESDKSVSEVNDEDDAEDGS 134
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 87/97 (89%), Gaps = 3/97 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FRE +KK++PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN+
Sbjct: 49 MEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNK 108
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDD 97
+ EG P+E+EES+KS+SEVNDEDD E+GS EEDDD
Sbjct: 109 KLEEG--PKEDEESDKSVSEVNDEDDAEDGS-EEDDD 142
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/83 (80%), Positives = 77/83 (92%), Gaps = 1/83 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+QYK+ HP NKSV+ VGKAGG+KWKSMSEA+KAPYVAKAEKRKVEYEK+MK YN+
Sbjct: 55 MEEFRKQYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNK 114
Query: 61 RQAEGTK-PEEEEESEKSMSEVN 82
+QAEGTK EEE+ESEKS+SEVN
Sbjct: 115 KQAEGTKVVEEEDESEKSLSEVN 137
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 82/91 (90%), Gaps = 2/91 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FRE +KK++PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN+
Sbjct: 426 MEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNK 485
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGS 91
+ EG P+E+EES+KS+SEVNDEDD E+GS
Sbjct: 486 KLEEG--PKEDEESDKSVSEVNDEDDAEDGS 514
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 75/82 (91%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR YK++HPKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN+
Sbjct: 567 MEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNK 626
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG P+E+EES+KS+SEVN
Sbjct: 627 KLEEG--PKEDEESDKSVSEVN 646
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 69/82 (84%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+QYK+ HP NKSV+ VGKAGG+KWKS+SEA+KAPYVAKAEKRK EY K M+ YN+
Sbjct: 58 MEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNK 117
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
R AEG EEEES+KS SEVN
Sbjct: 118 RMAEGPTAAEEEESDKSRSEVN 139
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 69/82 (84%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+QYK+ HP NKSV+ VGKAGG+KWKS+SEA+KAPYVAKAEKRK EY K M+ YN+
Sbjct: 56 MEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNK 115
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
R AEG EEEES+KS SEVN
Sbjct: 116 RMAEGPTAAEEEESDKSRSEVN 137
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 75/82 (91%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FRE +KK+HPKNKSVAAVGKA G+KWKS+S+A+KAPYVAKAEKRKV+YEK+MK YN+
Sbjct: 49 MEDFRETFKKEHPKNKSVAAVGKAAGDKWKSLSDAEKAPYVAKAEKRKVDYEKNMKAYNK 108
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG P+E+EES+KS+SEVN
Sbjct: 109 KLEEG--PKEDEESDKSVSEVN 128
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 75/82 (91%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR YK++HPKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN+
Sbjct: 46 MEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNK 105
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG P+E+EES+KS+SEVN
Sbjct: 106 KLEEG--PKEDEESDKSVSEVN 125
>gi|449455609|ref|XP_004145545.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449511984|ref|XP_004164108.1| PREDICTED: HMG1/2-like protein-like isoform 1 [Cucumis sativus]
gi|449511988|ref|XP_004164109.1| PREDICTED: HMG1/2-like protein-like isoform 2 [Cucumis sativus]
Length = 146
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 73/82 (89%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+++ +++P NK+V+AVGKA G+KWKSMS+A+KAPY+AKA+KRKVEYEK+MK YN+
Sbjct: 50 MEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNK 109
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+QA G EE+ESEKSMSEVN
Sbjct: 110 KQASGANAAEEDESEKSMSEVN 131
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 74/82 (90%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFRE YKK+HP NKSVAAVGKAGG+KWKS+S+++KAPY AKA+KRKVEYEK+M YN+
Sbjct: 46 MEEFRETYKKEHPNNKSVAAVGKAGGQKWKSLSDSEKAPYQAKADKRKVEYEKNMNAYNK 105
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q EG P+E+EES+KS+SEV+
Sbjct: 106 KQEEG--PKEDEESDKSVSEVH 125
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 62/65 (95%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFREQYKK+HPKNKSVAAVGKAGGEKWKS+S+A+KAPY+AKAEKRKVEYEK+MK Y +
Sbjct: 50 MEEFREQYKKEHPKNKSVAAVGKAGGEKWKSLSDAEKAPYIAKAEKRKVEYEKNMKAYTK 109
Query: 61 RQAEG 65
RQAE
Sbjct: 110 RQAEA 114
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 62/65 (95%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFREQYKK+HPKNKSVAAVGKAGG+KWKS+SEA+K PYV KAEKRKVEYEK+MK YN+
Sbjct: 50 MEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSEAEKRPYVDKAEKRKVEYEKNMKAYNK 109
Query: 61 RQAEG 65
RQAEG
Sbjct: 110 RQAEG 114
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 62/65 (95%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFREQYKK+HPKNKSVAAVGKAGG+KWKS+SEA+KAPYVAKAEKRKVEYEK +K YN+
Sbjct: 50 MEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYEKKLKAYNK 109
Query: 61 RQAEG 65
QAEG
Sbjct: 110 GQAEG 114
>gi|194466165|gb|ACF74313.1| high mobility group protein 2 [Arachis hypogaea]
Length = 153
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 72/82 (87%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+ KDHP+NK+V+AVGKA G KWK MS+A+KAPYVAK+EKRK +YEK+M+ YN+
Sbjct: 56 MEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNK 115
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+QAEG +EEES+KS+SEVN
Sbjct: 116 KQAEGPTGGDEEESDKSISEVN 137
>gi|148250187|gb|ABQ53545.1| HMG1 protein [Arachis diogoi]
Length = 141
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 72/82 (87%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+ KDHP+NK+V+AVGKA G KWK MS+A+KAPYVAK+EKRK +YEK+M+ YN+
Sbjct: 44 MEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNK 103
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+QAEG +EEES+KS+SEVN
Sbjct: 104 KQAEGPTGGDEEESDKSISEVN 125
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 74/82 (90%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FRE +KK++PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN+
Sbjct: 49 MEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNK 108
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG P+E+EES+KS+SEVN
Sbjct: 109 KLEEG--PKEDEESDKSVSEVN 128
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 74/82 (90%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FRE +KK++PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN+
Sbjct: 49 MEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNK 108
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG P+E+EES+KS+SEVN
Sbjct: 109 KLEEG--PKEDEESDKSVSEVN 128
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFREQYKK+HPKNKSVAAVGKAGG+KWKS+S A+KAPYVAKA+KRKVEYEK MK YN+
Sbjct: 54 MEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNK 113
Query: 61 RQAEG 65
QAEG
Sbjct: 114 EQAEG 118
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFREQYKK+HPKNKSVAAVGKAGG+KWKS+S A+KAPYVAKA+KRKVEYEK MK YN+
Sbjct: 54 MEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNK 113
Query: 61 RQAEG 65
QAEG
Sbjct: 114 EQAEG 118
>gi|255539248|ref|XP_002510689.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223551390|gb|EEF52876.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 145
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 62/65 (95%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFREQYKK+HPKNKSVAAVGKAGG++WKSMSE++KAP+VAKAEKRK+EYEK +K YN+
Sbjct: 49 MEEFREQYKKEHPKNKSVAAVGKAGGDRWKSMSESEKAPFVAKAEKRKIEYEKKLKAYNK 108
Query: 61 RQAEG 65
QAEG
Sbjct: 109 GQAEG 113
>gi|224083306|ref|XP_002306980.1| high mobility group family [Populus trichocarpa]
gi|222856429|gb|EEE93976.1| high mobility group family [Populus trichocarpa]
Length = 160
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 65/75 (86%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFREQYK++HPKNKSVAAVGKAGG+KWKS+SEA+KAP+VAKA+KRKVEYEK MK YN+
Sbjct: 55 MEEFREQYKREHPKNKSVAAVGKAGGDKWKSLSEAEKAPFVAKADKRKVEYEKKMKAYNK 114
Query: 61 RQAEGTKPEEEEESE 75
Q +G + + S+
Sbjct: 115 EQLKGPRKKRSLRSQ 129
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 67/82 (81%), Gaps = 4/82 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+QYK+ HP NKSVAAVGKAGG+KWKS+SEA+KAPY AKAEKRK EY KDM YN+
Sbjct: 50 MEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEYNKDMAAYNK 109
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
R A G ++ES+KS SEVN
Sbjct: 110 RLAGGN----DDESDKSKSEVN 127
>gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFREQYKK+HP NKSVA VGKAGG+KWKS+S+A+KAP+VA+AEK+K EY+K + YNR
Sbjct: 48 MSEFREQYKKEHPTNKSVAVVGKAGGDKWKSLSDAEKAPFVARAEKKKEEYDKSILAYNR 107
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG P EEE+S+KS SEVN
Sbjct: 108 K-LEGKNPSEEEKSDKSKSEVN 128
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%), Gaps = 4/82 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+QYK+ HP NKSVAAVGKAGG+KWKS+SEA+KAP+ AKAEKRK EY KDM YN+
Sbjct: 50 MEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPFAAKAEKRKFEYNKDMAAYNK 109
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
R A G ++ES+KS SEVN
Sbjct: 110 RLAGGN----DDESDKSKSEVN 127
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 74/82 (90%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YKKDHP NKSVAAVGKAGGEKWKS+S+++KAP+VAKA+KRKVEYEK MK YN+
Sbjct: 49 MEDFRQTYKKDHPNNKSVAAVGKAGGEKWKSLSDSEKAPFVAKADKRKVEYEKTMKAYNK 108
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG K E+EEES+KS+SEVN
Sbjct: 109 KLEEGPK-EDEEESDKSVSEVN 129
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 70/82 (85%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+QYKK+HP NKSVAAVGKAGG+KWKSMS+A+KAPY+ KAEKRK EY K M+ YN+
Sbjct: 49 MEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNK 108
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
R AEG EEEES+KS SEVN
Sbjct: 109 RIAEGGNGAEEEESDKSKSEVN 130
>gi|351725757|ref|NP_001235312.1| uncharacterized protein LOC100499992 [Glycine max]
gi|255628371|gb|ACU14530.1| unknown [Glycine max]
Length = 139
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFREQ+KK+HP NKSVA VGKAGGEKWKS+S+A+KAP+VA AEK+K EYEK + YN
Sbjct: 48 MSEFREQFKKEHPNNKSVAVVGKAGGEKWKSLSDAEKAPFVATAEKKKQEYEKTISAYN- 106
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q EG K EE+ES+KS SEVN
Sbjct: 107 KQLEG-KNSEEDESDKSKSEVN 127
>gi|1052956|gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 69/82 (84%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YK+ HP NKSVAAVGKAGG+KWK +++A+KAP++AKAEKRK EYEK M+ YNR
Sbjct: 47 MEDFRKTYKEKHPNNKSVAAVGKAGGDKWKQLTDAEKAPFIAKAEKRKQEYEKSMQAYNR 106
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+QA + +EEES+KS SEVN
Sbjct: 107 KQA--GEAADEEESDKSRSEVN 126
>gi|388511193|gb|AFK43658.1| unknown [Lotus japonicus]
Length = 92
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 63/82 (76%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR Q+KKD+P NKSVAAVGKA G KWKSM++A+KAPYVA+AEK K EYEK ++ YN
Sbjct: 1 MSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPYVARAEKAKEEYEKTLRAYNN 60
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
AE EEE S+KS SEVN
Sbjct: 61 GLAESKGSAEEEGSDKSKSEVN 82
>gi|115480551|ref|NP_001063869.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|50726318|dbj|BAD33893.1| putative HMGd1 [Oryza sativa Japonica Group]
gi|113632102|dbj|BAF25783.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|213959176|gb|ACJ54922.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215694881|dbj|BAG90072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 127
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 5/94 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YK+ HP K V+ +GKAGG+KWKSM++ADKAP+V KAEK K EY K + YN
Sbjct: 39 MEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDADKAPFVTKAEKLKAEYTKKIDAYNN 98
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE 94
+QA G P +S+KS SEVNDED EGSG+E
Sbjct: 99 KQAGG--PATSGDSDKSKSEVNDED---EGSGDE 127
>gi|351723773|ref|NP_001235499.1| uncharacterized protein LOC100305957 [Glycine max]
gi|255627099|gb|ACU13894.1| unknown [Glycine max]
Length = 142
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFREQ+KK+HP NKSVA VGKAGG+KWKS+S+A+KAP+VA AEK+K EYEK + YN+
Sbjct: 48 MSEFREQFKKEHPNNKSVAVVGKAGGDKWKSLSDAEKAPFVATAEKKKQEYEKTILAYNK 107
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG K EE+ES+KS SEVN
Sbjct: 108 K-LEG-KNSEEDESDKSKSEVN 127
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 66/82 (80%), Gaps = 3/82 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP NKSVAAVGKAGG+ WK +SEA+KAPY AKAEKRK EY+K+M YNR
Sbjct: 47 MEEFRKTYKEKHPNNKSVAAVGKAGGDAWKKLSEAEKAPYQAKAEKRKAEYQKNMDAYNR 106
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+QA EE+ES+KS SEV+
Sbjct: 107 KQAGDA---EEDESDKSKSEVH 125
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 61/75 (81%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR YK++HPKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN+
Sbjct: 46 MEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNK 105
Query: 61 RQAEGTKPEEEEESE 75
+ + S+
Sbjct: 106 KLVIALRKMRNLTSQ 120
>gi|729736|sp|P40619.1|HMGL_IPONI RecName: Full=HMG1/2-like protein
Length = 144
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 74/88 (84%), Gaps = 2/88 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YK+ HP NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN+
Sbjct: 47 MEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNK 106
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDE 88
+QA G EEEES+KS SEVND+D+D+
Sbjct: 107 KQAAGA--AEEEESDKSRSEVNDDDEDQ 132
>gi|388497528|gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 58/65 (89%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+Q+KKD+P NK+V+AVGKA G KWKS+SEA+KAPY AKAEKRK EYEK MK YN+
Sbjct: 56 MEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNK 115
Query: 61 RQAEG 65
+QAEG
Sbjct: 116 KQAEG 120
>gi|388497036|gb|AFK36584.1| unknown [Medicago truncatula]
Length = 155
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 58/65 (89%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+Q+KKD+P NK+V+AVGKA G KWKS+SEA+KAPY AKAEKRK EYEK MK YN+
Sbjct: 56 MEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNK 115
Query: 61 RQAEG 65
+QAEG
Sbjct: 116 KQAEG 120
>gi|351725567|ref|NP_001236841.1| HMG1/2-like protein [Glycine max]
gi|123379|sp|P26585.1|HMGL_SOYBN RecName: Full=HMG1/2-like protein; AltName: Full=Protein SB11
gi|18645|emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
Length = 152
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 60/65 (92%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ + K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN+
Sbjct: 55 MEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNK 114
Query: 61 RQAEG 65
+QAEG
Sbjct: 115 KQAEG 119
>gi|116778852|gb|ABK21026.1| unknown [Picea sitchensis]
gi|116782574|gb|ABK22556.1| unknown [Picea sitchensis]
gi|116782678|gb|ABK22606.1| unknown [Picea sitchensis]
gi|116782786|gb|ABK22657.1| unknown [Picea sitchensis]
gi|116782898|gb|ABK22712.1| unknown [Picea sitchensis]
gi|116791878|gb|ABK26144.1| unknown [Picea sitchensis]
gi|148907501|gb|ABR16881.1| unknown [Picea sitchensis]
gi|224284566|gb|ACN40016.1| unknown [Picea sitchensis]
gi|224285212|gb|ACN40332.1| unknown [Picea sitchensis]
gi|224286734|gb|ACN41070.1| unknown [Picea sitchensis]
Length = 157
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YK+ +P KSV+ VGKAGG+KWKSMSEADKAPYVAKA KRK EYEK+M YN
Sbjct: 63 MEDFRKTYKEKNPNVKSVSVVGKAGGDKWKSMSEADKAPYVAKAGKRKTEYEKNMAAYNN 122
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q T + EES+KS SEVN
Sbjct: 123 KQTS-TAGDSAEESDKSKSEVN 143
>gi|356508616|ref|XP_003523051.1| PREDICTED: HMG1/2-like protein-like [Glycine max]
Length = 152
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 59/65 (90%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ + K+HP NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN+
Sbjct: 55 MEEFRKVFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNK 114
Query: 61 RQAEG 65
+QAEG
Sbjct: 115 KQAEG 119
>gi|297836478|ref|XP_002886121.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
gi|297331961|gb|EFH62380.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 71/98 (72%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++ +P NKSVA VGKA G +WKSM+E DKAPYVAKAE RK EY K M+ YN
Sbjct: 46 LEDFRKEFNLANPNNKSVATVGKAAGARWKSMTEEDKAPYVAKAESRKTEYLKTMQQYNM 105
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 98
+ A GT EE++S+KS SEV++ +E EE+DD+
Sbjct: 106 KLASGTNRGEEDDSDKSKSEVDEAGSEEVFMQEEEDDD 143
>gi|225448398|ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera]
gi|147854340|emb|CAN83423.1| hypothetical protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ YK++HP K+V+AVGKAGGEKWKS+SEADKAPY AKA KRK +YEK M YN+
Sbjct: 67 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNK 126
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q E ++EEES++S SEVN
Sbjct: 127 KQ-ESMADDDEEESDRSKSEVN 147
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 66/82 (80%), Gaps = 3/82 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+QYK+ +P N+SV+AVGKAGGEKWKSM++A+KAPYV KAEKRK EY K M+ YN
Sbjct: 49 MEEFRKQYKEANPDNRSVSAVGKAGGEKWKSMTDAEKAPYVQKAEKRKSEYNKKMQAYNL 108
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ A G ++ES+KS SEVN
Sbjct: 109 KLAGGG---NDDESDKSKSEVN 127
>gi|255574381|ref|XP_002528104.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223532493|gb|EEF34283.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 171
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ +KK++P SVAAVGKAGG KWKSMS A+KAPY AKA K+K EY K M YN+
Sbjct: 66 LEEFRKTFKKENPSVTSVAAVGKAGGAKWKSMSSAEKAPYEAKAAKKKDEYGKLMNAYNK 125
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDD 86
+Q E T + EEES++S SEVNDEDD
Sbjct: 126 KQ-ESTADDGEEESDRSKSEVNDEDD 150
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 54/61 (88%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+QYK+ HP NKSV+ VGKAGG+KWKS+SEA+KAPYVAKAEKRK EY K M+ YN+
Sbjct: 58 MEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNK 117
Query: 61 R 61
R
Sbjct: 118 R 118
>gi|297819892|ref|XP_002877829.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
gi|297323667|gb|EFH54088.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 69/93 (74%), Gaps = 8/93 (8%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+KAPY KA KRK EYEK M YN+
Sbjct: 64 LEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNK 123
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGE 93
EG+ +ESEKS SEVNDED E SGE
Sbjct: 124 NMEEGS-----DESEKSRSEVNDED---EASGE 148
>gi|42572635|ref|NP_974413.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|222423104|dbj|BAH19531.1| AT3G51880 [Arabidopsis thaliana]
gi|332645335|gb|AEE78856.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 185
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 69/93 (74%), Gaps = 8/93 (8%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+KAPY KA KRK EYEK M YN+
Sbjct: 64 LEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNK 123
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGE 93
EG+ +ESEKS SE+NDED E SGE
Sbjct: 124 NLEEGS-----DESEKSRSEINDED---EASGE 148
>gi|388522261|gb|AFK49192.1| unknown [Lotus japonicus]
Length = 173
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 73/94 (77%), Gaps = 3/94 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+ +K ++P K V+AVGKAGGEKWKS+++A+KAPY AKA KRK EYEK + YN
Sbjct: 61 LEDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKAEYEKLINAYNN 120
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE 94
+QA T + +EES+KS SE+NDE+D E SG+E
Sbjct: 121 KQAS-TADDVDEESDKSKSEINDEED--EASGQE 151
>gi|449461783|ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 169
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 69/86 (80%), Gaps = 2/86 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR++YK+++P K+V+AVGKAGGEKWKS+S A+KAPY AKA KRK EYEK M+ Y+
Sbjct: 66 LEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDS 125
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDD 86
++ ++EESE+S SEVNDED+
Sbjct: 126 KKVASA--ADDEESERSKSEVNDEDE 149
>gi|351725417|ref|NP_001235556.1| uncharacterized protein LOC100305961 [Glycine max]
gi|255627113|gb|ACU13901.1| unknown [Glycine max]
Length = 169
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 67/86 (77%), Gaps = 3/86 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ +K ++P K+V+ VGKAGGEKWKS+S A+KAPY AKA KRK EYEK +K Y +
Sbjct: 64 LEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEK 123
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDD 86
+QA +++ES+KS SEVNDEDD
Sbjct: 124 KQASSA---DDDESDKSKSEVNDEDD 146
>gi|226505018|ref|NP_001151148.1| LOC100284781 [Zea mays]
gi|195644628|gb|ACG41782.1| HMG1/2-like protein [Zea mays]
Length = 127
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP K V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN
Sbjct: 39 MEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNN 98
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEG 90
+Q+ G P +S+KS SEVN D DEEG
Sbjct: 99 KQSGGG-PTLSGDSDKSKSEVN--DGDEEG 125
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 58/65 (89%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ + K++P+NK+V+AVGKA G KWKSMSEA+KAPYVAKAEKRK +YEK MK YN+
Sbjct: 55 MEDFRKIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNK 114
Query: 61 RQAEG 65
+QAEG
Sbjct: 115 KQAEG 119
>gi|238013344|gb|ACR37707.1| unknown [Zea mays]
gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like protein [Zea mays]
Length = 127
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP K V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN
Sbjct: 39 MEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNN 98
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEG 90
+Q+ G P +S+KS SEVN D DEEG
Sbjct: 99 KQSGGG-PTLSGDSDKSKSEVN--DGDEEG 125
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 65/82 (79%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP NKSVA VGKAGG+KWK +S+ +KAPY AKAEKRK EY+K+M YN+
Sbjct: 47 MEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKNMDAYNK 106
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ A G ++EES+KS SEV+
Sbjct: 107 KLAAGD--ADDEESDKSKSEVH 126
>gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 57/65 (87%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+Q+KK + NK+V+AVGKA G KWKSM+EA+KAPY AKAEKRK EYEK MK+YN+
Sbjct: 56 MEDFRKQFKKGNADNKAVSAVGKAAGAKWKSMTEAEKAPYAAKAEKRKAEYEKSMKSYNK 115
Query: 61 RQAEG 65
+QAEG
Sbjct: 116 KQAEG 120
>gi|15231065|ref|NP_190756.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|145332807|ref|NP_001078269.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|75274976|sp|O49595.1|HMGB1_ARATH RecName: Full=High mobility group B protein 1; AltName: Full=High
mobility group protein A; Short=AtHMGalpha; Short=HMG
alpha; AltName: Full=Nucleosome/chromatin assembly
factor group D 01; Short=Nucleosome/chromatin assembly
factor group D 1
gi|2832357|emb|CAA74400.1| HMG protein [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|21360557|gb|AAM47475.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|332645334|gb|AEE78855.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645336|gb|AEE78857.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 178
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 68/92 (73%), Gaps = 8/92 (8%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+KAPY KA KRK EYEK M YN+
Sbjct: 64 LEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNK 123
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSG 92
EG+ +ESEKS SE+NDED E SG
Sbjct: 124 NLEEGS-----DESEKSRSEINDED---EASG 147
>gi|21592453|gb|AAM64404.1| putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 71/97 (73%), Gaps = 4/97 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++ +P NKSVA VGKA G +WKSM++ DKAPYVAKAE RK EY K+++ YN
Sbjct: 46 LEDFRKEFNLANPNNKSVATVGKAAGARWKSMTDEDKAPYVAKAESRKTEYIKNVQQYNL 105
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDD 97
+ A GT EE++S+KS SEV++ +EE EDDD
Sbjct: 106 KLASGTN-REEDDSDKSKSEVDEAVSEEEA---EDDD 138
>gi|2832355|emb|CAA74403.1| HMG protein [Arabidopsis thaliana]
Length = 138
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 71/97 (73%), Gaps = 4/97 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++ +P NKSVA VGKA G +WKSM++ DKAPYVAKAE RK EY K+++ YN
Sbjct: 46 LEDFRKEFNLANPNNKSVATVGKAAGARWKSMTDEDKAPYVAKAESRKTEYIKNVQQYNL 105
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDD 97
+ A GT EE++S+KS SEV++ +EE EDDD
Sbjct: 106 KLASGTN-REEDDSDKSKSEVDEAVSEEEA---EDDD 138
>gi|357484151|ref|XP_003612362.1| HMG1/2-like protein [Medicago truncatula]
gi|355513697|gb|AES95320.1| HMG1/2-like protein [Medicago truncatula]
Length = 140
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFRE++KK++P NKSVA VGKAGG++WK++S+ADKAP++AKA+K K EYEK M+ YN
Sbjct: 47 MSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDADKAPFIAKADKLKEEYEKTMRAYNM 106
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
E EEE SEKS SEVN
Sbjct: 107 GITEKNA-SEEEGSEKSKSEVN 127
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+++K+ +PKNKSVAAVGKAGGE+WKSMS+A+KAP+V KAEK K EYEK M YN+
Sbjct: 21 MEDFRKEFKEKNPKNKSVAAVGKAGGERWKSMSDAEKAPFVKKAEKLKAEYEKKMVAYNK 80
Query: 61 --RQAEGTKPEEEEESEKSMSEVN 82
+ + EEEES+KS SEVN
Sbjct: 81 GEKVKDDNADVEEEESDKSKSEVN 104
>gi|125564627|gb|EAZ10007.1| hypothetical protein OsI_32309 [Oryza sativa Indica Group]
Length = 139
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 69/106 (65%), Gaps = 17/106 (16%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA------------DKAPYVAKAEKRK 48
ME+FR+ YK+ HP K V+ +GKAGG+KWKSM++A DKAP+V KAEK K
Sbjct: 39 MEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDAIGGYVVVAVPCKDKAPFVTKAEKLK 98
Query: 49 VEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE 94
EY K + YN +QA G P +S+KS SEVNDED EGSG+E
Sbjct: 99 AEYTKKIDAYNNKQAGG--PATSGDSDKSKSEVNDED---EGSGDE 139
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
gi|224286844|gb|ACN41125.1| unknown [Picea sitchensis]
gi|294461904|gb|ADE76508.1| unknown [Picea sitchensis]
Length = 151
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
++EFR++YK+ +P SV+AVGKAGGEKW+++S+A+KAPYVAKAEK+K EYEK M YN+
Sbjct: 57 LDEFRKEYKQANPNANSVSAVGKAGGEKWRALSDAEKAPYVAKAEKKKAEYEKSMATYNK 116
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
++ T+ E EES+KS SEVN
Sbjct: 117 QKDSNTE-EVAEESDKSKSEVN 137
>gi|217075707|gb|ACJ86213.1| unknown [Medicago truncatula]
gi|388513073|gb|AFK44598.1| unknown [Medicago truncatula]
Length = 142
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 63/82 (76%), Gaps = 3/82 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M +FREQYKKDHP NKSVAAVGKA GE WKSMSE DKAPY A+A K+K EYE + YN+
Sbjct: 48 MSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDKAPYAARALKKKEEYEVATQAYNK 107
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG +EE+ S+KS SEVN
Sbjct: 108 K-LEGK--DEEDGSDKSKSEVN 126
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 66/90 (73%), Gaps = 4/90 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP K V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN
Sbjct: 39 MEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNN 98
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEG 90
+Q+ P +S+KS SEVNDE DEEG
Sbjct: 99 KQS--GDPTASGDSDKSKSEVNDE--DEEG 124
>gi|222642048|gb|EEE70180.1| hypothetical protein OsJ_30257 [Oryza sativa Japonica Group]
Length = 139
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 69/106 (65%), Gaps = 17/106 (16%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA------------DKAPYVAKAEKRK 48
ME+FR+ YK+ HP K V+ +GKAGG+KWKSM++A DKAP+V KAEK K
Sbjct: 39 MEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDAIRGYVVVAVPCKDKAPFVTKAEKLK 98
Query: 49 VEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE 94
EY K + YN +QA G P +S+KS SEVNDED EGSG+E
Sbjct: 99 AEYTKKIDAYNNKQAGG--PATSGDSDKSKSEVNDED---EGSGDE 139
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 66/90 (73%), Gaps = 4/90 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP K V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN
Sbjct: 39 MEEFRKDYKEKHPNVKQVSLIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNN 98
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEG 90
+Q+ P +S+KS SEVNDE DEEG
Sbjct: 99 KQS--GDPTASGDSDKSKSEVNDE--DEEG 124
>gi|15227862|ref|NP_179347.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|145323080|ref|NP_001031364.2| high mobility group B4 protein [Arabidopsis thaliana]
gi|310947092|sp|Q42344.1|HMGB4_ARATH RecName: Full=High mobility group B protein 4; AltName: Full=High
mobility group protein G; Short=AtHMGgamma; Short=HMG
gamma; AltName: Full=Nucleosome/chromatin assembly
factor group D 04; Short=Nucleosome/chromatin assembly
factor group D 4
gi|13926177|gb|AAK49570.1|AF370562_1 putative HMG protein [Arabidopsis thaliana]
gi|4914377|gb|AAD32913.1| putative HMG protein [Arabidopsis thaliana]
gi|23297615|gb|AAN12992.1| putative HMG protein [Arabidopsis thaliana]
gi|330251557|gb|AEC06651.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|330251558|gb|AEC06652.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 138
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 71/97 (73%), Gaps = 4/97 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++ +P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN
Sbjct: 46 LEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNL 105
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDD 97
+ A GT EE++S+KS SEV++ +EE EDDD
Sbjct: 106 KLASGTN-REEDDSDKSKSEVDEAVSEEEA---EDDD 138
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ +KK++P K+V+AVGKAGGEKWKS+++A+KAPY AKA KRK EYEK M YN+
Sbjct: 110 LEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDAEKAPYEAKAAKRKSEYEKLMNAYNK 169
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q E + E +E SEKS SEV+
Sbjct: 170 KQ-ESSADEADEGSEKSRSEVH 190
>gi|145328748|ref|NP_001077909.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|222423535|dbj|BAH19737.1| AT2G17560 [Arabidopsis thaliana]
gi|330251559|gb|AEC06653.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 134
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 68/90 (75%), Gaps = 4/90 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++ +P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN
Sbjct: 46 LEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNL 105
Query: 61 RQAEGTKPEEEEESEKSMSEVND---EDDD 87
+ A GT EE++S+KS SEV++ EDDD
Sbjct: 106 KLASGTN-REEDDSDKSKSEVDEAEAEDDD 134
>gi|729737|sp|P40620.1|HMGL_VICFA RecName: Full=HMG1/2-like protein
Length = 149
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 65/82 (79%), Gaps = 3/82 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE ++ YN+
Sbjct: 56 MADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNK 115
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG ++EE S+KS SEVN
Sbjct: 116 K-LEGK--DDEEGSDKSKSEVN 134
>gi|357159916|ref|XP_003578598.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 128
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME FR+ YK+ HP K V+ VGKAGG +WKS+S+A+KAP+VAKAEK K EY K M YN
Sbjct: 39 MEGFRKDYKEKHPDVKQVSVVGKAGGAEWKSLSDAEKAPFVAKAEKLKAEYNKKMVAYNN 98
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEE 89
QA G E +S+KS SEVNDE D E
Sbjct: 99 PQAGGQ--EASGDSDKSKSEVNDEADGSE 125
>gi|168032698|ref|XP_001768855.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168032700|ref|XP_001768856.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679967|gb|EDQ66408.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679968|gb|EDQ66409.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 69/91 (75%), Gaps = 4/91 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ EFRE +K+++P K V AVGKAGGEKWKSMSEA+K P++ KA ++K EY+K + YN+
Sbjct: 23 LNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQPFMTKAVQKKSEYDKTISAYNK 82
Query: 61 RQ-AEGTKPEEEEESEKSMSEVNDEDDDEEG 90
+Q AE E EES+KS SE+ND++D+E G
Sbjct: 83 KQDAEEV---EAEESDKSKSEINDDEDEEVG 110
>gi|13877775|gb|AAK43965.1|AF370150_1 putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 70/97 (72%), Gaps = 4/97 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++ +P NKSVA VGKA G +WK+M++ DKAPYVAKAE K EY K+++ YN
Sbjct: 46 LEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESIKTEYIKNVQQYNL 105
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDD 97
+ A GT EE++S+KS SEV++ +EE EDDD
Sbjct: 106 KLASGTN-REEDDSDKSKSEVDEAVSEEEA---EDDD 138
>gi|312281849|dbj|BAJ33790.1| unnamed protein product [Thellungiella halophila]
Length = 185
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 63/82 (76%), Gaps = 5/82 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+ +KK++P K+V+AVGKAGG+KWKSMS+A+KAPY KA KRK EYEK M YN+
Sbjct: 64 LEDFRQTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKLMDAYNK 123
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
EG+ +ESEKS SEVN
Sbjct: 124 NMEEGS-----DESEKSRSEVN 140
>gi|224112525|ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
gi|222865260|gb|EEF02391.1| high mobility group family [Populus trichocarpa]
Length = 176
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 6/91 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ YK++HP K+V+AVGKAGGEKWKS+S A+KAPY AKA KRK +YEK M YN+
Sbjct: 67 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKSDYEKLMTAYNK 126
Query: 61 RQAEGTKPEEE------EESEKSMSEVNDED 85
+Q +++ E+S KS SEVN ++
Sbjct: 127 KQDTDDGDDDDNDDDNIEQSHKSKSEVNGQN 157
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFREQYKK+HP NKSVA VGKAGG++WKSMS+ADKAPY AKAEK+K EYE+ M+ YN+
Sbjct: 47 MSEFREQYKKEHPNNKSVAVVGKAGGDRWKSMSDADKAPYQAKAEKKKEEYERTMQAYNK 106
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q E EE+ES+KS SEVN
Sbjct: 107 KQ-ESKGASEEDESDKSKSEVN 127
>gi|357136925|ref|XP_003570053.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 144
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ +HP NKSVA V KA GEKW+SMS+ADKAPYV KA ++K +YEK +++
Sbjct: 45 MSEFRQEYQAEHPNNKSVANVSKAAGEKWRSMSDADKAPYVEKAGQKKQDYEKTKATFDK 104
Query: 61 RQAEG---TKPEEEEESEKSMSEVNDED 85
+++ TK +++E S+KS SEV+DED
Sbjct: 105 KESTSSKKTKTQDDEGSDKSKSEVDDED 132
>gi|225448400|ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 53/62 (85%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ YK++HP K+V+AVGKAGGEKWKS+SEADKAPY AKA KRK +YEK M YN+
Sbjct: 67 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNK 126
Query: 61 RQ 62
+Q
Sbjct: 127 KQ 128
>gi|407971018|ref|NP_001238631.1| uncharacterized protein LOC100499704 [Glycine max]
gi|255625939|gb|ACU13314.1| unknown [Glycine max]
Length = 166
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 64/82 (78%), Gaps = 3/82 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ +K ++P K+V+ VGKAGGEKWKS+S A+KAPY +KA KRK EYEK +K Y++
Sbjct: 64 LEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSAEKAPYESKAAKRKAEYEKLIKAYDK 123
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+QA ++EES+KS SEVN
Sbjct: 124 KQASSA---DDEESDKSKSEVN 142
>gi|334185909|ref|NP_001190062.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645337|gb|AEE78858.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 161
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 62/82 (75%), Gaps = 5/82 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+KAPY KA KRK EYEK M YN+
Sbjct: 64 LEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNK 123
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
EG+ +ESEKS SE+N
Sbjct: 124 NLEEGS-----DESEKSRSEIN 140
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME FR+++K +PKNKS+AAVGKAGGE+WKSMS+++KAP+V+KAEK K EY K M +N+
Sbjct: 44 MEGFRKEFKDKNPKNKSIAAVGKAGGERWKSMSDSEKAPFVSKAEKLKAEYGKKMNAHNK 103
Query: 61 --RQAEGTKPEEEEESEKSMSEVN 82
+ + EEEES+KS SEVN
Sbjct: 104 GEKLRDDNAELEEEESDKSKSEVN 127
>gi|346467231|gb|AEO33460.1| hypothetical protein [Amblyomma maculatum]
Length = 115
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 63/82 (76%), Gaps = 5/82 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME FR+QYK+ HPKNKSVA VGKAGGEKWKS+SE++KA +++KAEK + EY+K + Y +
Sbjct: 23 MEGFRKQYKEAHPKNKSVAVVGKAGGEKWKSLSESEKAVFLSKAEKLRSEYQKKIDAYEK 82
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
Q +EEES+KS SEVN
Sbjct: 83 GQH-----VDEEESDKSKSEVN 99
>gi|414590133|tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP K V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN
Sbjct: 59 MEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNN 118
Query: 61 RQAEGTKPEEEEESEKSMSE 80
+Q+ G P +S+KS SE
Sbjct: 119 KQSGGG-PTLSGDSDKSKSE 137
>gi|346467547|gb|AEO33618.1| hypothetical protein [Amblyomma maculatum]
Length = 146
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 69/86 (80%), Gaps = 6/86 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
++EFR+++K+ +P+NKSVAAV KAGG +WKSMS+ADK PYV+KA+K KVEY+K +K Y +
Sbjct: 53 LDEFRKEFKEKNPENKSVAAVTKAGGARWKSMSDADKEPYVSKADKLKVEYQKKVKAYEK 112
Query: 61 RQAEGTKPEE----EEESEKSMSEVN 82
QA +PE+ +EES+KS SEVN
Sbjct: 113 GQAH--EPEDNAEMDEESDKSKSEVN 136
>gi|116781378|gb|ABK22074.1| unknown [Picea sitchensis]
gi|224284710|gb|ACN40086.1| unknown [Picea sitchensis]
Length = 154
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 59/82 (71%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ +K+ HP K V AVGKA G+KWK MSEA+KAPY+AKA +++ EY+ M Y +
Sbjct: 59 LEEFRKTFKQKHPDVKGVTAVGKACGDKWKEMSEAEKAPYLAKAAQKRAEYDVTMTAYKK 118
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q G + EESEKS SE+N
Sbjct: 119 KQEVGVQSATPEESEKSKSELN 140
>gi|414590134|tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP K V+ +GKAGG+ WKS+S+A+KAPYV+KAEK KVEY K M YN
Sbjct: 39 MEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNN 98
Query: 61 RQAEGTKPEEEEESEKSMSE 80
+Q+ G P +S+KS SE
Sbjct: 99 KQSGGG-PTLSGDSDKSKSE 117
>gi|302754440|ref|XP_002960644.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
gi|300171583|gb|EFJ38183.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
Length = 134
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 63/85 (74%), Gaps = 3/85 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ YKKDHP K VAA+GKAGG+ WKS+S+ +K PY AKA KRK +Y+KD++ YN+
Sbjct: 47 LEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAAKRKADYDKDLEAYNK 106
Query: 61 RQAEGTKPEEEEESEKSMSEVNDED 85
++ +G+ E E KS S ND+D
Sbjct: 107 KKEDGSAGESE---VKSKSAGNDDD 128
>gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+
Sbjct: 63 MEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 122
Query: 61 RQAEGTK 67
++ K
Sbjct: 123 GESTAAK 129
>gi|413935042|gb|AFW69593.1| high mobility group protein1 [Zea mays]
Length = 220
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+
Sbjct: 52 MEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
Query: 61 RQAEGTK 67
++ K
Sbjct: 112 GESTAAK 118
>gi|293335943|ref|NP_001167650.1| high mobility group protein1 [Zea mays]
gi|123378|sp|P27347.1|MNB1B_MAIZE RecName: Full=DNA-binding protein MNB1B; AltName: Full=HMG1-like
protein
gi|22329|emb|CAA41220.1| high mobility group protein [Zea mays]
gi|5441502|emb|CAB46752.1| HMGa protein [Zea mays]
gi|22347617|gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
gi|194701148|gb|ACF84658.1| unknown [Zea mays]
gi|194702316|gb|ACF85242.1| unknown [Zea mays]
gi|194703290|gb|ACF85729.1| unknown [Zea mays]
gi|195606194|gb|ACG24927.1| DNA-binding protein MNB1B [Zea mays]
gi|195612638|gb|ACG28149.1| DNA-binding protein MNB1B [Zea mays]
gi|195618138|gb|ACG30899.1| DNA-binding protein MNB1B [Zea mays]
gi|195618904|gb|ACG31282.1| DNA-binding protein MNB1B [Zea mays]
gi|195619012|gb|ACG31336.1| DNA-binding protein MNB1B [Zea mays]
gi|195619124|gb|ACG31392.1| DNA-binding protein MNB1B [Zea mays]
gi|195638824|gb|ACG38880.1| DNA-binding protein MNB1B [Zea mays]
gi|195642004|gb|ACG40470.1| DNA-binding protein MNB1B [Zea mays]
gi|223972731|gb|ACN30553.1| unknown [Zea mays]
gi|223972797|gb|ACN30586.1| unknown [Zea mays]
gi|223973279|gb|ACN30827.1| unknown [Zea mays]
gi|223974975|gb|ACN31675.1| unknown [Zea mays]
gi|413935043|gb|AFW69594.1| high mobility group protein1 [Zea mays]
Length = 157
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+
Sbjct: 52 MEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
Query: 61 RQAEGTK 67
++ K
Sbjct: 112 GESTAAK 118
>gi|302803281|ref|XP_002983394.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
gi|300149079|gb|EFJ15736.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
Length = 123
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 10/93 (10%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ YKKDHP K VAA+GKAGG+ WKS+S+ +K PY AKA KRK +Y+KD++ YN+
Sbjct: 33 LEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSDKEKEPYHAKAAKRKADYDKDLEAYNK 92
Query: 61 RQAEGTKPEEEEESEKSMSEVNDE----DDDEE 89
++ EEEE+ SEV + DDDEE
Sbjct: 93 KK------EEEEDGSAGESEVKSKSAGNDDDEE 119
>gi|295913696|gb|ADG58089.1| transcription factor [Lycoris longituba]
Length = 183
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS A+KAPY AKA KRKV+Y K M YN+
Sbjct: 78 MEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAAKRKVDYNKTMVAYNK 137
Query: 61 RQAEG 65
+ A+G
Sbjct: 138 KLADG 142
>gi|115470082|ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein [Oryza sativa Japonica Group]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica Group]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa Japonica Group]
gi|113596680|dbj|BAF20554.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa Japonica Group]
gi|215692803|dbj|BAG88247.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 51/60 (85%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+++K+ +PKNKSVAAVGKA G++WKS++EADKAPYVAKA K K EY K + YN+
Sbjct: 53 MEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNK 112
>gi|224098541|ref|XP_002311212.1| high mobility group family [Populus trichocarpa]
gi|222851032|gb|EEE88579.1| high mobility group family [Populus trichocarpa]
Length = 179
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ YK++HP K+V+AVGKAGGEKWKSMS A+KAPY AKA +K +Y K M Y++
Sbjct: 67 LEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLMTAYSK 126
Query: 61 RQ----AEGTKPEEEEESEKSMSEVNDEDDDEEGSG 92
+Q + ++ + S +S SEV+ +DD +E G
Sbjct: 127 KQETDDGGADEEDDYKHSHRSKSEVDGQDDSDESVG 162
>gi|118484946|gb|ABK94338.1| unknown [Populus trichocarpa]
Length = 171
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ YK++HP K+V+AVGKAGGEKWKSMS A+KAPY AKA +K +Y K M Y++
Sbjct: 67 LEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLMTAYSK 126
Query: 61 RQ----AEGTKPEEEEESEKSMSEVNDEDDDEEGSG 92
+Q + ++ + S +S SEV+ +DD +E G
Sbjct: 127 KQETDDGGADEEDDYKHSHRSKSEVDGQDDSDESVG 162
>gi|295913307|gb|ADG57910.1| transcription factor [Lycoris longituba]
Length = 138
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 52/66 (78%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS A+KAPY AKA KRKV+Y K M YN+
Sbjct: 33 MEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAAKRKVDYNKTMVAYNK 92
Query: 61 RQAEGT 66
+ A+G
Sbjct: 93 KLADGA 98
>gi|295913393|gb|ADG57949.1| transcription factor [Lycoris longituba]
Length = 162
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS A+KAPY AKA KRKV+Y K M YN+
Sbjct: 57 MEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEKAPYEAKAAKRKVDYNKTMVAYNK 116
Query: 61 RQAEG 65
+ A+G
Sbjct: 117 KLADG 121
>gi|195619220|gb|ACG31440.1| HMG1/2-like protein [Zea mays]
Length = 139
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 70/100 (70%), Gaps = 6/100 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR+QY+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K +YEK N+++
Sbjct: 44 MSEFRQQYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDK 103
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE--DDDE 98
+++ +K + E+ + S SEV+DED GS +E DDDE
Sbjct: 104 KESTSSKKAKTEDEDGSKSEVDDED----GSSDEENDDDE 139
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 50/58 (86%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
ME FR+++K+ +PKNKSVAAVGKAGGEKWKSMS+A+KAP+V KAEK K EYEK M Y
Sbjct: 51 MEGFRKEFKEKNPKNKSVAAVGKAGGEKWKSMSDAEKAPFVKKAEKLKAEYEKKMVAY 108
>gi|357123079|ref|XP_003563240.1| PREDICTED: DNA-binding protein MNB1B-like [Brachypodium distachyon]
Length = 160
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 51/60 (85%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M+EFR+++K+ +PKNKSVAAVGKA GE+WK++SE+DKAPYVAKA K K EY K + YN+
Sbjct: 53 MDEFRKEFKEKNPKNKSVAAVGKAAGERWKTLSESDKAPYVAKANKLKAEYNKAIAAYNK 112
>gi|255571919|ref|XP_002526902.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223533801|gb|EEF35533.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 190
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 52/62 (83%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+ YK++HP K+V+AVGKAGGEKWKSMS A+K+P+ AKA KRK +YEK M YN+
Sbjct: 67 LEDFRKVYKQEHPNVKAVSAVGKAGGEKWKSMSNAEKSPFEAKAAKRKSDYEKLMTAYNK 126
Query: 61 RQ 62
+Q
Sbjct: 127 KQ 128
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP K V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN
Sbjct: 39 MEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNN 98
Query: 61 RQAEGTKPEEEEESEKSMSE 80
+Q+ P +S+KS SE
Sbjct: 99 KQS--GDPTASGDSDKSKSE 116
>gi|295913708|gb|ADG58095.1| transcription factor [Lycoris longituba]
Length = 190
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN+
Sbjct: 85 MEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNK 144
Query: 61 RQAEG 65
+ A+G
Sbjct: 145 KLADG 149
>gi|295913458|gb|ADG57979.1| transcription factor [Lycoris longituba]
Length = 179
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN+
Sbjct: 75 MEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNK 134
Query: 61 RQAEG 65
+ A+G
Sbjct: 135 KLADG 139
>gi|125583208|gb|EAZ24139.1| hypothetical protein OsJ_07880 [Oryza sativa Japonica Group]
Length = 170
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 4/90 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ HP NKSVAAV KA GEKW++MSE +KAPYV KA ++K +YEK N+++
Sbjct: 69 MSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDK 128
Query: 61 RQAEGTK----PEEEEESEKSMSEVNDEDD 86
+++ +K ++ E S+KS SEV+D+ D
Sbjct: 129 KESTSSKKAKTHDDGEGSDKSKSEVDDDQD 158
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 50/60 (83%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFRE++K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K + YN+
Sbjct: 53 MGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
>gi|357506009|ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
gi|355498308|gb|AES79511.1| HMG1/2-like protein [Medicago truncatula]
gi|388511215|gb|AFK43669.1| unknown [Medicago truncatula]
Length = 170
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 70/92 (76%), Gaps = 5/92 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+ +K ++P K+V+AVGKAGGEKWKS+++A+KAPY AKA KRKVEYEK M YN
Sbjct: 62 LEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLMNAYNN 121
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSG 92
+ + ++EEES+K SEVN+ED E SG
Sbjct: 122 KPSSAD--DDEEESDKDNSEVNNED---EASG 148
>gi|18700443|dbj|BAB85204.1| high mobility group box protein 2 [Oryza sativa Japonica Group]
gi|125540625|gb|EAY87020.1| hypothetical protein OsI_08417 [Oryza sativa Indica Group]
Length = 145
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 4/90 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ HP NKSVAAV KA GEKW++MSE +KAPYV KA ++K +YEK N+++
Sbjct: 44 MSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDK 103
Query: 61 RQAEGTKP----EEEEESEKSMSEVNDEDD 86
+++ +K ++ E S+KS SEV+D+ D
Sbjct: 104 KESTSSKKAKTHDDGEGSDKSKSEVDDDQD 133
>gi|157382900|gb|ABV48885.1| high mobility group protein B3 [Physcomitrella patens]
Length = 158
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 61/82 (74%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ EFRE +K+++P K V AVGKAGGEKWKSMSEA+K P++ KA ++K EY+K + YN+
Sbjct: 64 LNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEAEKQPFMTKAVQKKSEYDKTISAYNK 123
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q E + E EES+K SE+N
Sbjct: 124 KQDEDAEEVEAEESDKCKSEIN 145
>gi|295913526|gb|ADG58011.1| transcription factor [Lycoris longituba]
Length = 171
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN+
Sbjct: 70 MEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNK 129
Query: 61 RQAEG 65
+ A+G
Sbjct: 130 KLADG 134
>gi|413938186|gb|AFW72737.1| hypothetical protein ZEAMMB73_544458 [Zea mays]
Length = 96
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 70/100 (70%), Gaps = 6/100 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K +YEK N+++
Sbjct: 1 MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDK 60
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE--DDDE 98
+++ +K + E+ + S SEV+DED GS +E DDDE
Sbjct: 61 KESTSSKKAKTEDEDGSKSEVDDED----GSSDEENDDDE 96
>gi|115447831|ref|NP_001047695.1| Os02g0670400 [Oryza sativa Japonica Group]
gi|50251344|dbj|BAD28320.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|50252158|dbj|BAD28154.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|113537226|dbj|BAF09609.1| Os02g0670400 [Oryza sativa Japonica Group]
Length = 145
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 4/90 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ HP NKSVAAV KA GEKW++MSE +KAPYV KA ++K +YEK N+++
Sbjct: 44 MSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDK 103
Query: 61 RQAEGTKP----EEEEESEKSMSEVNDEDD 86
+++ +K ++ E S+KS SEV+D+ D
Sbjct: 104 KESTSSKKAKTHDDGEGSDKSKSEVDDDQD 133
>gi|295913700|gb|ADG58091.1| transcription factor [Lycoris longituba]
Length = 162
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN+
Sbjct: 57 MEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNK 116
Query: 61 RQAEG 65
+ A+G
Sbjct: 117 KLADG 121
>gi|295913475|gb|ADG57987.1| transcription factor [Lycoris longituba]
Length = 162
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK EY K M YN+
Sbjct: 57 MEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAEYNKTMVAYNK 116
Query: 61 RQAEG 65
+ A+G
Sbjct: 117 KLADG 121
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP K V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN
Sbjct: 39 MEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNN 98
Query: 61 RQAEGTKP 68
+Q P
Sbjct: 99 KQVHLETP 106
>gi|1845195|emb|CAA69605.1| HMGc1 [Zea mays]
gi|5441504|emb|CAB46753.1| HMGc1 protein [Zea mays]
gi|194690322|gb|ACF79245.1| unknown [Zea mays]
gi|194704052|gb|ACF86110.1| unknown [Zea mays]
gi|219885481|gb|ACL53115.1| unknown [Zea mays]
gi|413938184|gb|AFW72735.1| HMG-like nucleosome/chromatin assembly factor D isoform 1 [Zea
mays]
gi|413938185|gb|AFW72736.1| HMG-like nucleosome/chromatin assembly factor D isoform 2 [Zea
mays]
Length = 139
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 70/100 (70%), Gaps = 6/100 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K +YEK N+++
Sbjct: 44 MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDK 103
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE--DDDE 98
+++ +K + E+ + S SEV+DED GS +E DDDE
Sbjct: 104 KESTSSKKAKTEDEDGSKSEVDDED----GSSDEENDDDE 139
>gi|162461550|ref|NP_001105075.1| high mobility group box protein2 [Zea mays]
gi|17017394|gb|AAL33651.1|AF440222_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 139
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 70/100 (70%), Gaps = 6/100 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K +YEK N+++
Sbjct: 44 MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDK 103
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE--DDDE 98
+++ +K + E+ + S SEV+DED GS +E DDDE
Sbjct: 104 KESTSSKKAKTEDEDGSKSEVDDED----GSSDEENDDDE 139
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ HP K V+ +GKAGG+KWKS+S+A+KAPYV+KAEK K EY K + YN
Sbjct: 39 MEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNN 98
Query: 61 RQAEGTKP 68
+Q P
Sbjct: 99 KQVHLETP 106
>gi|297798364|ref|XP_002867066.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312902|gb|EFH43325.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 125
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+++FR ++ +P NKSVA+VGKA G+KWKSM+E DKAP+VAKA+ +K EY M+ YN
Sbjct: 45 LDDFRREFNLANPDNKSVASVGKAAGKKWKSMTEEDKAPFVAKAKSKKTEYAATMQQYNM 104
Query: 61 RQAEGTKPEEEEESE 75
A GTK ++E +
Sbjct: 105 ELANGTKTAGDDEKQ 119
>gi|4468042|emb|CAB37859.1| unnamed protein product [Vicia faba var. minor]
Length = 74
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
M +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE ++ Y
Sbjct: 17 MADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAY 74
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+++K+ +PKNKSVAAVGKA G++WKS++EADKAPYVAKA K K EY + + R
Sbjct: 53 MEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNRPLLPTTR 112
>gi|255566393|ref|XP_002524182.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223536551|gb|EEF38197.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 155
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 52/62 (83%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M+EFR+ +K+ +P NK+V+AVGKAGGEKWKS+SE DKAPY+ KA KRK EYEK ++ Y +
Sbjct: 59 MDEFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYKQ 118
Query: 61 RQ 62
++
Sbjct: 119 QK 120
>gi|449468356|ref|XP_004151887.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449517965|ref|XP_004166014.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
Length = 142
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 56/92 (60%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ YK+ P K+ VGK GGEKWKSMS+A+KAPY KA KRK EYE ++ Y
Sbjct: 50 MEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKN 109
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSG 92
ES+KS SEVND+ + E S
Sbjct: 110 NLNCPQNHRMPTESQKSTSEVNDDTEQEASSS 141
>gi|168028752|ref|XP_001766891.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681870|gb|EDQ68293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ EFRE +KK++P K VAAVGKAGGEKWKSMSEA+K PY+ KA ++K EY+K + YN+
Sbjct: 68 LNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAVQKKSEYDKTLSAYNK 127
Query: 61 RQ 62
+Q
Sbjct: 128 KQ 129
>gi|388497798|gb|AFK36965.1| unknown [Medicago truncatula]
Length = 170
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 69/92 (75%), Gaps = 5/92 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+ +K ++P K+V+AVGKAGG KWKS+++A+KAPY AKA KRKVEYEK M YN
Sbjct: 62 LEDFRKTFKAENPNVKAVSAVGKAGGGKWKSLTKAEKAPYEAKAVKRKVEYEKLMDAYNN 121
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSG 92
+ + ++EEES+K SEVN+ED E SG
Sbjct: 122 KPSSAD--DDEEESDKDNSEVNNED---EASG 148
>gi|157382898|gb|ABV48884.1| high mobility group protein B2 [Physcomitrella patens]
Length = 165
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ EFRE +KK++P K VAAVGKAGGEKWKSMSEA+K PY+ KA ++K EY+K + YN+
Sbjct: 68 LNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEAEKQPYMQKAVQKKSEYDKTLSAYNK 127
Query: 61 RQAEGTKPEEEEESE--KSMSEVNDE 84
+Q + + EE E E KS SE+ND+
Sbjct: 128 KQDDDEEDEEVEAEESDKSKSEINDD 153
>gi|371721822|gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ +K+ +P NK V+AVGKA G+KWKS++ A+KAPY AKA KRK EY K M YN+
Sbjct: 13 MEDFRKIFKEKNPDNKQVSAVGKAAGDKWKSLTAAEKAPYEAKAAKRKAEYTKTMAAYNK 72
Query: 61 RQAEG 65
+ ++G
Sbjct: 73 KLSDG 77
>gi|359386154|gb|AEV43366.1| group B HMG-box protein [Citrus sinensis]
Length = 165
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ YK++HP K+V+AVGKAGGEKWKS+++A+KAP+ AKA KRK++YEK M YN+
Sbjct: 67 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126
Query: 61 RQAEGTKPEEEEESEKSMSEVNDE 84
+Q E+EEESEKS SEV+D+
Sbjct: 127 KQESTED-EDEEESEKSKSEVHDD 149
>gi|950053|emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 68/93 (73%), Gaps = 10/93 (10%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFRE++K+ +PKNKSVAAVGKA GE+WKS+SE++KAP+VAKA K K EY K + +YN+
Sbjct: 53 MGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPFVAKANKLKGEYNKAIASYNK 112
Query: 61 RQAEGTKPEE----------EEESEKSMSEVND 83
++ P++ EEES+KS SE+ND
Sbjct: 113 GESTTAAPKKASSKEVEEEDEEESDKSKSEIND 145
>gi|47027098|gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+Q+K+ +P NK V+ VGKA KWK+MS A+KAP+ A+A KRK +Y K M YN+
Sbjct: 54 MEDFRKQFKEKNPNNKQVSVVGKACWGKWKTMSAAEKAPFEARAAKRKADYNKVMVAYNK 113
Query: 61 RQAEG 65
+Q+EG
Sbjct: 114 KQSEG 118
>gi|449534501|ref|XP_004174200.1| PREDICTED: high mobility group B protein 3-like [Cucumis sativus]
Length = 66
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 45/51 (88%)
Query: 32 MSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 82
MS+A+KAPY+AKA+KRKVEYEK+MK YN++QA G EE+ESEKSMSEVN
Sbjct: 1 MSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVN 51
>gi|357508231|ref|XP_003624404.1| High mobility group protein [Medicago truncatula]
gi|355499419|gb|AES80622.1| High mobility group protein [Medicago truncatula]
Length = 144
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M +FR +++K++P NK V+ VGKA GEKW+SMS+ DKAPYVA AEK+K+EY K + YN+
Sbjct: 24 MSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSD-DKAPYVADAEKKKMEYVKAIHAYNK 82
Query: 61 R 61
+
Sbjct: 83 K 83
>gi|413923415|gb|AFW63347.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 95
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ HP NKSVAAV KA GEKW+SMSE +K PYV +A ++K +YEK N
Sbjct: 1 MSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEKTKANI-E 59
Query: 61 RQAEGTKPEEEEESEKSMSEV 81
+++ +K + ++ + S SEV
Sbjct: 60 KESTSSKKAKTDDDDGSKSEV 80
>gi|15237040|ref|NP_195282.1| high mobility group B5 protein [Arabidopsis thaliana]
gi|75219649|sp|O49597.1|HMGB5_ARATH RecName: Full=High mobility group B protein 5; AltName: Full=High
mobility group protein D; Short=AtHMGdelta; Short=HMG
delta; AltName: Full=Nucleosome/chromatin assembly
factor group D 05; Short=Nucleosome/chromatin assembly
factor group D 5
gi|2832363|emb|CAA74404.1| HMG protein [Arabidopsis thaliana]
gi|3367575|emb|CAA20027.1| HMG delta protein [Arabidopsis thaliana]
gi|7270508|emb|CAB80273.1| HMG delta protein [Arabidopsis thaliana]
gi|21553743|gb|AAM62836.1| HMG delta protein [Arabidopsis thaliana]
gi|98961063|gb|ABF59015.1| At4g35570 [Arabidopsis thaliana]
gi|222423786|dbj|BAH19859.1| AT4G35570 [Arabidopsis thaliana]
gi|332661132|gb|AEE86532.1| high mobility group B5 protein [Arabidopsis thaliana]
Length = 125
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+++FR+++ +P NKSV VG+A G+KWK+M+E ++AP+VAK++ +K EY M+ YN
Sbjct: 45 LDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNM 104
Query: 61 RQAEGTKPEEEEESE 75
A G K ++E +
Sbjct: 105 ELANGNKTTGDDEKQ 119
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ HP NKSVAAV KA GEKW+SMSE +K PYV +A ++K +YEK N
Sbjct: 45 MSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEKTKANI-E 103
Query: 61 RQAEGTKPEEEEESEKSMSEV 81
+++ +K + ++ + S SEV
Sbjct: 104 KESTSSKKAKTDDDDGSKSEV 124
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFR++Y+ HP NKSVAAV KA GEKW+SMSE +K PYV +A ++K +YEK N +
Sbjct: 45 MSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEKTKANIEK 104
Query: 61 RQAEGTKPEEEEESEKSMSEV 81
+ +K + ++ + S SEV
Sbjct: 105 --STSSKKAKTDDDDGSKSEV 123
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 50
MEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS +KAPY AKA KRK E
Sbjct: 57 MEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSATEKAPYEAKAAKRKAE 106
>gi|302796105|ref|XP_002979815.1| hypothetical protein SELMODRAFT_18312 [Selaginella
moellendorffii]
gi|302807533|ref|XP_002985461.1| hypothetical protein SELMODRAFT_18313 [Selaginella
moellendorffii]
gi|300146924|gb|EFJ13591.1| hypothetical protein SELMODRAFT_18313 [Selaginella
moellendorffii]
gi|300152575|gb|EFJ19217.1| hypothetical protein SELMODRAFT_18312 [Selaginella
moellendorffii]
Length = 84
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 44/61 (72%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E FR+QYK+DHP K VAAVGKA G+KW MSE++KA YV KA + + +Y + M Y +
Sbjct: 24 LESFRQQYKEDHPDVKGVAAVGKAAGDKWSKMSESEKAVYVNKAAQLRADYAESMAAYKK 83
Query: 61 R 61
+
Sbjct: 84 K 84
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
ME FR+++K +P K V A KAGGEKW SMSE +KAPYVA+A RK +YE+ M Y
Sbjct: 148 METFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVAEASVRKGQYEQAMTAY 205
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
M +FR++YK +HP NKSV+AV K GGE+WKSMS+ DK PY+ KA + K EY
Sbjct: 103 MSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEY 153
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
M +FR++YK +HP NKSV+AV K GGE+WKSMS+ DK PY+ KA + K EY
Sbjct: 103 MSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEY 153
>gi|302790391|ref|XP_002976963.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
gi|300155441|gb|EFJ22073.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
Length = 156
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 49/71 (69%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EE+R+ +K HP K VAAVGKAGG+ WK ++E +K PY KA ++K +YEK + Y +
Sbjct: 66 LEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPYHDKAAQKKADYEKTLTEYKK 125
Query: 61 RQAEGTKPEEE 71
+Q E K E+E
Sbjct: 126 KQEEDAKNEKE 136
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 46/59 (77%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
M++FR++YK+ +P +K+V+ V K GGEKWKSM++ +K PYV KA + K EY+K M+ YN
Sbjct: 110 MDDFRKEYKESNPDSKNVSVVAKEGGEKWKSMTDEEKKPYVDKAAELKAEYDKAMETYN 168
>gi|339716048|gb|AEJ88271.1| putative HMG DNA-binding protein [Wolffia arrhiza]
Length = 148
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 61/82 (74%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR++YK+ HP NKSVAAVGKA G KW+SMS++DKAPYV K+ KRK E +K +
Sbjct: 52 LEEFRKEYKEKHPDNKSVAAVGKAAGAKWRSMSDSDKAPYVNKSNKRKAEVQKTAAVNAK 111
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q ++ +++S+KS SEVN
Sbjct: 112 KQETSSRAAADDDSDKSKSEVN 133
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M++FR+ YK+ +P K A VGK GG KWK+MS+ DK PY+ KA + K EYEK M Y +
Sbjct: 119 MDDFRKTYKETNPDVKGAAQVGKEGGLKWKAMSDEDKKPYLEKAAELKAEYEKAMSKYQQ 178
Query: 61 -RQAEGTKPEEEEESEKSMS----EVNDEDDDEEGSGE 93
+ E K + E E + S +VNDE+ + G GE
Sbjct: 179 DLKDEAAKSSDGGEDEVAKSDADGDVNDEEANSNGDGE 216
>gi|168050181|ref|XP_001777538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671023|gb|EDQ57581.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 41/58 (70%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
ME FR+++K +P K V A KAGGEKW SMSE +KAPYVA+A RK +YE+ M Y
Sbjct: 204 METFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVAEASVRKGQYEQAMTAY 261
>gi|359481661|ref|XP_002279947.2| PREDICTED: high mobility group B protein 1-like [Vitis vinifera]
gi|147815135|emb|CAN74566.1| hypothetical protein VITISV_023651 [Vitis vinifera]
gi|297740214|emb|CBI30396.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ +KK++P K+V+AVGKAGGE+WKS+SEA+KAPY AKA K+K EYEK M YN+
Sbjct: 67 LEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEAEKAPYEAKAAKKKAEYEKIMNAYNK 126
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q E T + +EES++S SEVN
Sbjct: 127 KQ-ESTADDGDEESDRSKSEVN 147
>gi|302797885|ref|XP_002980703.1| hypothetical protein SELMODRAFT_38818 [Selaginella
moellendorffii]
gi|300151709|gb|EFJ18354.1| hypothetical protein SELMODRAFT_38818 [Selaginella
moellendorffii]
Length = 83
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EE+R+ +K HP K VAAVGKAGG+ WK ++E +K PY KA ++K +YEK + Y +
Sbjct: 22 LEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPYHDKAAQKKADYEKTLTEYKK 81
Query: 61 RQ 62
+Q
Sbjct: 82 KQ 83
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
M++FR+++K HP NKSVA V K GGE+WKSM++ +K PY+ KA + K E E
Sbjct: 103 MDDFRKEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELKAEAE 154
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
M++FR+++K HP NKSVA V K GGEKWKSM++ +K PYV KA + K + E
Sbjct: 108 MDDFRKEFKAAHPDNKSVATVAKEGGEKWKSMTDEEKKPYVEKAAELKAQAE 159
>gi|293333310|ref|NP_001168929.1| uncharacterized protein LOC100382741 [Zea mays]
gi|223973791|gb|ACN31083.1| unknown [Zea mays]
Length = 204
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 49
M EFR++Y+ HP NKSVA V KA GEKW++MS+ +K PYV +A ++K+
Sbjct: 44 MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKL 92
>gi|162462896|ref|NP_001105076.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|17017396|gb|AAL33652.1|AF440223_1 HMG type nucleosome/chromatin assembly factor D [Zea mays]
gi|22135475|gb|AAM93218.1|AF527617_1 nucleasome/chromatin assembly factor D protein NFD106 [Zea mays]
Length = 154
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
M++FR+++K HP NKSVA V K GGE+WKSM++ +K PY+ KA + K E E
Sbjct: 45 MDDFRKEFKATHPDNKSVATVAKEGGERWKSMTDEEKKPYIEKAAELKAEAE 96
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 42/55 (76%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
M++FR++YK+ HP NKSVA+V K GGE+W+SM+ +K PY +A + K EY K++
Sbjct: 115 MDDFRKEYKELHPDNKSVASVAKEGGERWRSMTIEEKKPYTDRAAELKAEYVKEI 169
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 44/59 (74%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+++FR+++K+ +P +K V VGK GGEKW++M++ +K PY+ K + K EYEK M NYN
Sbjct: 113 LDDFRKEFKEANPGSKDVKRVGKEGGEKWRAMTDEEKKPYLEKVAELKEEYEKAMANYN 171
>gi|359486418|ref|XP_003633441.1| PREDICTED: high mobility group B protein 1 [Vitis vinifera]
Length = 151
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 16/82 (19%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+EEFR+ YK++HP K+V+A DKAPY AKA KRK +YEK M YN+
Sbjct: 67 LEEFRKVYKQEHPNVKAVSA---------------DKAPYEAKAAKRKSDYEKLMAAYNK 111
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+Q E ++EEES++S SEVN
Sbjct: 112 KQ-ESMADDDEEESDRSKSEVN 132
>gi|297736623|emb|CBI25494.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 35
+EEFR+ YK++HP K+V+AVGKAGGEKWKS+SEA
Sbjct: 91 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEA 125
>gi|357165293|ref|XP_003580334.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 135
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK---AEKRKVEYEKDMKN 57
+ EFR QY + HP+ K VAAV KA GEKW+SMS+ +KA Y K ++ K +K+ +
Sbjct: 38 LAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSDEEKAKYGGKKQEVQENKAAKKKESTS 97
Query: 58 YNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDD 97
+ + +G + EE E S+KS S+V D D +E+G+ EED+D
Sbjct: 98 SKKAKTDGDE-EEGEGSDKSKSDVED-DGEEDGANEEDED 135
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 40
M++FR ++K HP K VAAVGKA GEKW+SM+E +K PY
Sbjct: 112 MKDFRVEFKTSHPDEKGVAAVGKAAGEKWRSMTEEEKKPY 151
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+++FR+ +K+ +P +K V VGK GEKW+SM++ +K PY+ K + K EYEK M++Y
Sbjct: 114 LDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVAELKAEYEKAMESY 171
>gi|357135842|ref|XP_003569517.1| PREDICTED: high mobility group B protein 14-like [Brachypodium
distachyon]
Length = 127
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+++K ++P KS+ +G+A GEKW M+ +K Y A +R+ E+EK M YN+
Sbjct: 54 MEDFRDKFKAENPSVKSMQDIGRACGEKWNKMAFEEKVKYYDLATERRAEFEKAMAQYNK 113
Query: 61 RQAEG 65
++ G
Sbjct: 114 KKISG 118
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
M++FR+ YK+ +P +K V V K GGEKWKSM++ +K PY KA + K EYEK +++ N
Sbjct: 122 MDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESRN 180
>gi|357484153|ref|XP_003612363.1| HMG1/2-like protein [Medicago truncatula]
gi|355513698|gb|AES95321.1| HMG1/2-like protein [Medicago truncatula]
Length = 94
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 35
M EFRE++KK++P NKSVA VGKAGG++WK++S+A
Sbjct: 47 MSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDA 81
>gi|413935044|gb|AFW69595.1| high mobility group protein1 [Zea mays]
Length = 97
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 33/35 (94%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 35
MEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+
Sbjct: 52 MEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSES 86
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+++FR+ +K+ +P +K V VGK GEKW+SM++ +K PY+ K + K EYEK M++Y
Sbjct: 114 LDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVAELKEEYEKAMESY 171
>gi|427794389|gb|JAA62646.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 604
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M +FR++ P+ VAA+ K GGE+W+SMSE DK PYV + + K++YE++M+ Y R
Sbjct: 269 MGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYVERQNEEKMKYEQNMEEYRR 327
Query: 61 RQ 62
+Q
Sbjct: 328 KQ 329
>gi|427793707|gb|JAA62305.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 529
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M +FR++ P+ VAA+ K GGE+W+SMSE DK PYV + + K++YE++M+ Y R
Sbjct: 290 MGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYVERQNEEKMKYEQNMEEYRR 348
Query: 61 RQ 62
+Q
Sbjct: 349 KQ 350
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 39/52 (75%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
M++FR ++K HP K V+AVGKA G KWK+M++ +K PY+ +A++ K +++
Sbjct: 112 MKDFRLEFKASHPDEKGVSAVGKAAGVKWKAMTDEEKKPYLDQAKELKAKFD 163
>gi|427793709|gb|JAA62306.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 640
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M +FR++ P+ VAA+ K GGE+W+SMSE DK PYV + + K++YE++M+ Y R
Sbjct: 305 MGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYVERQNEEKMKYEQNMEEYRR 363
Query: 61 RQ 62
+Q
Sbjct: 364 KQ 365
>gi|213959194|gb|ACJ54931.1| HMG protein [Oryza sativa Japonica Group]
Length = 131
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK---AEKRKVEYEKDMKN 57
+ EFR QY + HP K VAAV KA GEKW++MS+ +KA Y K E + K
Sbjct: 36 LAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKPDGESKPAAASKKKST 95
Query: 58 YNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE 94
+++ +E E S+KS S+V EDD+ +GSGE+
Sbjct: 96 SSKKAKTDGAEQEGEGSDKSKSDV--EDDENDGSGED 130
>gi|427780835|gb|JAA55869.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 508
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M +FR++ P+ VAA+ K GGE+W+SMSE DK PYV + + K++YE++M+ Y R
Sbjct: 269 MGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSEEDKRPYVERQNEEKMKYEQNMEEYRR 327
Query: 61 RQ 62
+Q
Sbjct: 328 KQ 329
>gi|291228964|ref|XP_002734447.1| PREDICTED: structure specific recognition protein-like
[Saccoglossus kowalevskii]
Length = 259
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E RE KK P SVA + K GE WK M+E+DK Y A A + K++YE MK Y R
Sbjct: 86 LNEKRESIKKSLP-GSSVAEISKRAGELWKKMTESDKKKYTALAAEEKIKYEDAMKVYKR 144
Query: 61 RQAEG 65
+QA+G
Sbjct: 145 KQADG 149
>gi|449521910|ref|XP_004167972.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 112
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 35
+EEFR++YK+++P K+V+AVGKAGGEKWKS+S A
Sbjct: 66 LEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHA 100
>gi|242053921|ref|XP_002456106.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
gi|241928081|gb|EES01226.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
Length = 109
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YK++ P KS+ +GKA GEKW +M+ +K Y A +++ E+EK M YN+
Sbjct: 36 MEDFRKVYKQEKPSVKSMQEIGKACGEKWNTMAFEEKVKYYDIATEKRAEFEKAMIEYNK 95
Query: 61 RQAEG 65
++ G
Sbjct: 96 KKKNG 100
>gi|162460188|ref|NP_001105108.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|4995921|emb|CAB44297.1| HMG1 protein [Zea mays]
Length = 123
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y + ++ +K+ + +
Sbjct: 30 LAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKASKKENTSSKK 89
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 98
+A+ + +E E S KS SEV D++ D G ED+DE
Sbjct: 90 AKADVREGDEAEGSNKSKSEVEDDEQD----GNEDEDE 123
>gi|195627962|gb|ACG35811.1| HMG1/2-like protein [Zea mays]
Length = 123
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y + ++ +K+ + +
Sbjct: 30 LAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGSSKKQDGKASKKENTSSKK 89
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 98
+A+ + +E E S KS SEV D++ D G ED+DE
Sbjct: 90 AKADIREGDEAEGSNKSKSEVEDDEQD----GNEDEDE 123
>gi|115459940|ref|NP_001053570.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|38345400|emb|CAE03091.2| OSJNBa0017B10.6 [Oryza sativa Japonica Group]
gi|113565141|dbj|BAF15484.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|116309704|emb|CAH66751.1| H0409D10.9 [Oryza sativa Indica Group]
gi|116309707|emb|CAH66753.1| OSIGBa0158F05.2 [Oryza sativa Indica Group]
gi|125549359|gb|EAY95181.1| hypothetical protein OsI_16998 [Oryza sativa Indica Group]
gi|149391231|gb|ABR25633.1| hmg1/2-like protein [Oryza sativa Indica Group]
gi|213959192|gb|ACJ54930.1| HMG protein [Oryza sativa Japonica Group]
gi|215767864|dbj|BAH00093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629376|gb|EEE61508.1| hypothetical protein OsJ_15798 [Oryza sativa Japonica Group]
gi|323388963|gb|ADX60286.1| HMG transcription factor [Oryza sativa Japonica Group]
Length = 132
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 8/99 (8%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK-----AEKRKVEYEKDM 55
+ EFR QY + HP K VAAV KA GEKW++MS+ +KA Y K ++ +K+
Sbjct: 36 LAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKPDGESKPAAASKKKES 95
Query: 56 KNYNRRQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEE 94
+ + + +G + +E E S+KS S+V EDD+ +GSGE+
Sbjct: 96 TSSKKAKTDGAE-QEGEGSDKSKSDV--EDDENDGSGED 131
>gi|414585862|tpg|DAA36433.1| TPA: HMG1 protein [Zea mays]
Length = 123
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y ++ +K+ + +
Sbjct: 30 LAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKASKKENTSSKK 89
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 98
+A+ + +E E S KS SEV D++ D G ED+DE
Sbjct: 90 AKADVREGDEAEGSNKSKSEVEDDEQD----GNEDEDE 123
>gi|18403553|ref|NP_565788.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|75219838|sp|O64702.2|HMG14_ARATH RecName: Full=High mobility group B protein 14; AltName:
Full=Nucleosome/chromatin assembly factor group D 14
gi|20197083|gb|AAC26692.2| putative HMG protein [Arabidopsis thaliana]
gi|20197160|gb|AAM14948.1| putative HMG protein [Arabidopsis thaliana]
gi|21536857|gb|AAM61189.1| putative HMG protein [Arabidopsis thaliana]
gi|26452914|dbj|BAC43535.1| putative HMG protein [Arabidopsis thaliana]
gi|28973511|gb|AAO64080.1| putative HMG protein [Arabidopsis thaliana]
gi|330253881|gb|AEC08975.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 151
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+++FR+QY++++P KS+ +GK GEKWK+M+ +K Y A +++ E+ + M Y +
Sbjct: 74 LDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTK 133
Query: 61 RQAEGTKPEEEEESEKS 77
R G E E +S+ S
Sbjct: 134 RMESGAHDESETDSDYS 150
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 22/98 (22%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
++EFR+ +K+ +P +K V V K GEKWK+M++ +K PY KA + K EY+K + N
Sbjct: 111 LDEFRKTFKEANPDSKDVKRVAKEAGEKWKAMTDEEKKPYADKATELKAEYDKALGEVN- 169
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 98
N E+ D+EG E+DD E
Sbjct: 170 ---------------------NAENKDDEGGSEKDDAE 186
>gi|356524949|ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 148
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++++ +P KS+ +GKA GEKWK+M+ +K Y A K++ E++ M +N+
Sbjct: 71 LEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATKKREEFDNAMAEFNK 130
Query: 61 RQAEGTKPEEEEESE 75
+ G E ++ESE
Sbjct: 131 KMENGEFDETDDESE 145
>gi|225463454|ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
gi|297740668|emb|CBI30850.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 45/65 (69%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++++ +P KS+ +GKA GEKWK+M+ +K Y A +++ E+++ M +Y +
Sbjct: 99 LEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMADYIK 158
Query: 61 RQAEG 65
RQ G
Sbjct: 159 RQESG 163
>gi|226503761|ref|NP_001151622.1| HMG1/2-like protein [Zea mays]
gi|195648164|gb|ACG43550.1| HMG1/2-like protein [Zea mays]
gi|414881086|tpg|DAA58217.1| TPA: HMG1/2-like protein [Zea mays]
Length = 115
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YK++ P KS+ +GKA GEKW +M+ +K Y A +++ E+EK M YN+
Sbjct: 52 MEDFRKIYKQEKPSVKSMQEIGKACGEKWNTMTFEEKVKYYDIATEKRAEFEKAMIEYNK 111
Query: 61 RQ 62
++
Sbjct: 112 KK 113
>gi|351724833|ref|NP_001237839.1| uncharacterized protein LOC100305607 [Glycine max]
gi|255626057|gb|ACU13373.1| unknown [Glycine max]
Length = 150
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++++ +P +S+ +GKA GEKWK+M+ +K Y A K++ E++ M +N+
Sbjct: 73 LEDFRKEFQEQNPDVRSMRDIGKACGEKWKTMTYEEKVQYYDIATKKREEFDSAMAEFNK 132
Query: 61 RQAEGTKPEEEEESE 75
+ G E ++ESE
Sbjct: 133 KMENGEFDETDDESE 147
>gi|449433698|ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
gi|449505924|ref|XP_004162605.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
Length = 161
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+++FR+++++ +P K++ VGKA GEKWK+M+ +K Y A +++ E++K M Y +
Sbjct: 84 LDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMTEYKK 143
Query: 61 RQAEGTKPEEEEE 73
R G E EE+
Sbjct: 144 RMESGIDQESEED 156
>gi|414585863|tpg|DAA36434.1| TPA: hypothetical protein ZEAMMB73_396569 [Zea mays]
Length = 119
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ EFR QY + HP+ K V V KA GEKW+SMS+ +KA Y ++ +K+ + +
Sbjct: 30 LAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEKAKYGGSKKQDGKASKKENTSSKK 89
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSG 92
+A+ + +E E S KS SEV EDD+++G G
Sbjct: 90 AKADVREGDEAEGSNKSKSEV--EDDEQDGRG 119
>gi|125527178|gb|EAY75292.1| hypothetical protein OsI_03182 [Oryza sativa Indica Group]
Length = 133
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YK+++P KS+ VGKA GEKW +M+ ++ Y A +++ EYEK + +++
Sbjct: 60 MEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKRAEYEKPVAEFDK 119
Query: 61 RQAEG 65
++ G
Sbjct: 120 KKESG 124
>gi|356528116|ref|XP_003532651.1| PREDICTED: high mobility group protein B2-like [Glycine max]
Length = 234
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 42/59 (71%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
ME+FR+++++ +P KS+ +GKA GEKWK+M+ +K Y A ++++E+++ M +N
Sbjct: 60 MEDFRKEFQEQNPDIKSMYDIGKACGEKWKTMTYEEKVKYYDIASEKRIEFDRAMAKFN 118
>gi|297597325|ref|NP_001043799.2| Os01g0666200 [Oryza sativa Japonica Group]
gi|56202161|dbj|BAD73639.1| HMG protein-like [Oryza sativa Japonica Group]
gi|125527174|gb|EAY75288.1| hypothetical protein OsI_03176 [Oryza sativa Indica Group]
gi|215693961|dbj|BAG89148.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673529|dbj|BAF05713.2| Os01g0666200 [Oryza sativa Japonica Group]
Length = 133
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YK+++P KS+ VGKA GEKW +M+ ++ Y A +++ EYEK + +++
Sbjct: 60 MEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKRAEYEKAVAEFDK 119
Query: 61 RQAEG 65
++ G
Sbjct: 120 KKESG 124
>gi|297826905|ref|XP_002881335.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327174|gb|EFH57594.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 1 MEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+E+FR+QY++++P+ KS+ +GK GEKWK+M+ +K Y A +++ E+ + M Y
Sbjct: 75 LEDFRKQYQEENPEVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYT 134
Query: 60 RRQAEGTKPEEEEESEKS 77
+R G E E +SE S
Sbjct: 135 KRMESGGYDESETDSEYS 152
>gi|222619008|gb|EEE55140.1| hypothetical protein OsJ_02931 [Oryza sativa Japonica Group]
Length = 157
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
E+FR+ YK+++P KS+ VGKA GEKW +M+ ++ Y A +++ EYEK + ++++
Sbjct: 85 EDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKRAEYEKAVAEFDKK 144
Query: 62 QAEGTKPEE 70
+ G EE
Sbjct: 145 KESGELSEE 153
>gi|66840992|emb|CAI64395.1| putative high mobility group protein [Triticum aestivum]
Length = 112
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPY 40
+ EFR QY + HP+ K VAAV KA GEKW+SMS+ +KA Y
Sbjct: 34 LAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSDEEKAKY 73
>gi|79324303|ref|NP_001031480.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|330253882|gb|AEC08976.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 1 MEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+++FR+QY++++P KS+ +GK GEKWK+M+ +K Y A +++ E+ + M Y
Sbjct: 74 LDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYT 133
Query: 60 RRQAEGTKPEEEEESEKS 77
+R G E E +S+ S
Sbjct: 134 KRMESGAHDESETDSDYS 151
>gi|255557355|ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 198
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+ ++K +P KS+ +GKA GEKWK M+ +K Y A +++ E++K M Y +
Sbjct: 121 LEDFRKDFQKQNPDVKSMREIGKACGEKWKMMTYEEKVKYYDIATEKRAEFDKAMAEYIK 180
Query: 61 RQAEGTKPEEEEESE 75
++ G E E++SE
Sbjct: 181 KKESGEFEEVEDDSE 195
>gi|224080027|ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
gi|222848960|gb|EEE86507.1| high mobility group family [Populus trichocarpa]
Length = 165
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++++ +P KS+ VGKA GEKWK+M+ +K Y A +++ E+++ Y +
Sbjct: 88 LEDFRKEFQEQNPDVKSMREVGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRATSEYIK 147
Query: 61 RQAEG 65
R+ G
Sbjct: 148 RKESG 152
>gi|283462216|gb|ADB22402.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 241
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + KK HP N V V KA GE+WK++S ADKA Y +A K K+ YEKDM+ Y
Sbjct: 140 RAEVKKVHP-NWGVGDVAKALGEQWKNVSAADKAKYEKEAAKEKIRYEKDMEAY 192
>gi|388501678|gb|AFK38905.1| unknown [Medicago truncatula]
Length = 152
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++K +P KS+ +GKA GEKWK+M+ +K Y A +++ E+++ YN+
Sbjct: 75 LEDFRKEFKDQNPDVKSMRDIGKACGEKWKTMTFEEKVQYYDIATEKRAEFDRATTEYNK 134
Query: 61 RQAEG 65
+ G
Sbjct: 135 KMESG 139
>gi|237845111|ref|XP_002371853.1| high mobility group protein [Toxoplasma gondii ME49]
gi|211969517|gb|EEB04713.1| high mobility group protein [Toxoplasma gondii ME49]
gi|221480801|gb|EEE19228.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221501467|gb|EEE27242.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 302
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
RE+ + +P+ KS +A VGK GE W +S+A K PY +KA K YE++M Y +
Sbjct: 243 REEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKKPYESKAVADKARYEREMIAYKK 299
>gi|296317265|ref|NP_001171733.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 215
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + KK HP N V V KA GE+WK++S ADKA Y +A K K+ YEKDM+ Y
Sbjct: 114 RAEVKKVHP-NWGVGDVAKALGEQWKNVSAADKAKYEKEAAKEKIRYEKDMEAY 166
>gi|47497872|dbj|BAD20056.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|50252043|dbj|BAD27975.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|125581537|gb|EAZ22468.1| hypothetical protein OsJ_06136 [Oryza sativa Japonica Group]
Length = 504
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
K+V +G+ GE+WK+MSEA+KAP+ A A K++ EY+ +M Y +R
Sbjct: 308 KNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYRQR 353
>gi|115445389|ref|NP_001046474.1| Os02g0258200 [Oryza sativa Japonica Group]
gi|113536005|dbj|BAF08388.1| Os02g0258200, partial [Oryza sativa Japonica Group]
Length = 269
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
K+V +G+ GE+WK+MSEA+KAP+ A A K++ EY+ +M Y +R
Sbjct: 73 KNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYRQR 118
>gi|125538867|gb|EAY85262.1| hypothetical protein OsI_06634 [Oryza sativa Indica Group]
Length = 504
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
K+V +G+ GE+WK+MSEA+KAP+ A A K++ EY+ +M Y +R
Sbjct: 308 KNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYRQR 353
>gi|242064692|ref|XP_002453635.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
gi|241933466|gb|EES06611.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
Length = 488
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
K+V +GK GE+WK+M+EA KAPY A K+K EY+K M+ Y +++ E
Sbjct: 311 KNVPEIGKITGEEWKNMTEAQKAPYEKVARKQKEEYQKQMEVYKQKKIE 359
>gi|226530710|ref|NP_001144208.1| hypothetical protein [Zea mays]
gi|195638446|gb|ACG38691.1| hypothetical protein [Zea mays]
gi|413936487|gb|AFW71038.1| hypothetical protein ZEAMMB73_874920 [Zea mays]
Length = 487
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE 75
K+V +GK GE+WK+M+E +APY A K+K EY K M+ Y +++AE E+EE E
Sbjct: 310 KNVPEIGKITGEEWKNMTEGQRAPYEEVARKQKEEYHKQMEVYKQKKAEEAASLEKEEQE 369
>gi|281202543|gb|EFA76745.1| PHD zinc finger-containing protein [Polysphondylium pallidum PN500]
Length = 604
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E RE KK+ P + S++ + K G KWK+M+E +KAPY K++ K YE ++ YNR
Sbjct: 218 LNENREIEKKNQP-DMSLSEISKLLGNKWKAMNEEEKAPYFEKSQDDKRRYEVEIVEYNR 276
Query: 61 RQAE 64
+ E
Sbjct: 277 KIKE 280
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
M++FR++YK+ +P +K V V K GG +WKSM++ +K YV KA + K E +K +++ N
Sbjct: 116 MDDFRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKAAELKAENDKALESDN 174
>gi|388495062|gb|AFK35597.1| unknown [Lotus japonicus]
Length = 162
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 42/63 (66%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR++++ +P K++ +GK+ GEKWK+M+ +K Y A +++ E+++ M YN+
Sbjct: 81 LEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNK 140
Query: 61 RQA 63
+
Sbjct: 141 KMV 143
>gi|326499588|dbj|BAJ86105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
K+V +GK GE+WK M+EA KAPY A K+K Y+K M+ YN+++
Sbjct: 357 KTVPEIGKITGEEWKGMTEAQKAPYEEAARKQKEAYQKQMEVYNQKK 403
>gi|444730168|gb|ELW70558.1| High mobility group protein B3 [Tupaia chinensis]
Length = 369
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K G+ W ++S+++K PY+ KA K K +YEKD+ NY
Sbjct: 105 SEFRPKIKSTNP-GISIGDVAKKLGDMWNNLSDSEKQPYITKAAKLKEKYEKDVANY 160
>gi|357139210|ref|XP_003571177.1| PREDICTED: high mobility group B protein 13-like [Brachypodium
distachyon]
Length = 537
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 67
K+V +GK GE+WKSM++A KAPY A K+K EY K M+ Y +++ E T+
Sbjct: 352 KNVPEIGKITGEEWKSMTDAQKAPYEEVASKQKEEYHKQMEVYKQKKLEETQ 403
>gi|361127235|gb|EHK99210.1| putative Non-histone chromosomal protein 6 [Glarea lozoyensis
74030]
Length = 100
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++S+ + PY AKA+ K+ YE++ NYN
Sbjct: 38 RENVREENP-GISFGQVGKVLGERWKALSDTQRKPYAAKADADKIRYEEEKANYN 91
>gi|297736622|emb|CBI25493.3| unnamed protein product [Vitis vinifera]
Length = 70
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 36 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVN 82
DKAPY AKA KRK +YEK M YN++Q E ++EEES++S SEVN
Sbjct: 6 DKAPYEAKAAKRKSDYEKLMAAYNKKQ-ESMADDDEEESDRSKSEVN 51
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
M +FR+ +K +H N S+A K GGEKWKS++E +K Y+ KA + K EY K +
Sbjct: 111 MSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 164
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
M +FR+ +K +H N S+A K GGEKWKS++E +K Y+ KA + K EY K +
Sbjct: 126 MSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 179
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
M +FR+ +K +H N S+A K GGEKWKS++E +K Y+ KA + K EY K +
Sbjct: 126 MNDFRKTFKTEH--NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 179
>gi|313225328|emb|CBY06802.1| unnamed protein product [Oikopleura dioica]
Length = 448
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ K G KW SMSE +KAPYVAKA + +V++EK ++ Y
Sbjct: 232 ITKRAGSKWNSMSEEEKAPYVAKALETRVKWEKQLQIY 269
>gi|397788063|gb|AFO66680.1| SoxB [Sycon ciliatum]
Length = 366
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R+Q+ +++PK + + + GEKWK ++E ++APYV KA + E+ K +Y R
Sbjct: 20 EERKQFAQENPKMHN-SEISTKLGEKWKRLTEEERAPYVDKARSIRTEHMKKFPDYKYR- 77
Query: 63 AEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDD 97
P+ + ++ + S V + D+E + D
Sbjct: 78 -----PKRKPKTISATSRVPTTNHDDESGPDSPPD 107
>gi|351715334|gb|EHB18253.1| High mobility group protein B3, partial [Heterocephalus glaber]
Length = 151
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 55 FSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 111
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
ME FR+ YK +P++K VAA KAGGEKWK M+E ++APY AE RK+ YE+ M NY
Sbjct: 122 MESFRKTYKDANPESKGVAAAAKAGGEKWKQMTEEERAPYNKDAEARKLNYEQAMTNY 179
>gi|395857208|ref|XP_003800997.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 225
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P SV V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISVGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|291410190|ref|XP_002721383.1| PREDICTED: high-mobility group box 3 [Oryctolagus cuniculus]
Length = 215
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 121 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 175
>gi|348551110|ref|XP_003461373.1| PREDICTED: high mobility group protein B3-like [Cavia porcellus]
Length = 202
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|354495940|ref|XP_003510086.1| PREDICTED: high mobility group protein B3-like [Cricetulus griseus]
gi|344249016|gb|EGW05120.1| High mobility group protein B3 [Cricetulus griseus]
Length = 200
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|348538096|ref|XP_003456528.1| PREDICTED: high mobility group protein B2-like [Oreochromis
niloticus]
Length = 196
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + K+D+P S+ + K GE W + S DKAPY AKA + K +YEKD+ Y +
Sbjct: 110 RPKIKEDNP-GISIGDIAKKLGEMWATQSAKDKAPYEAKAARLKEKYEKDVAAYRAKGGS 168
Query: 65 GTKP 68
G KP
Sbjct: 169 GKKP 172
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K + A+ KV Y+++MK Y
Sbjct: 23 REEHKKKHPGTSVNFAEFSKKCSERWKTMSPKEKGKFEEMAKNDKVRYDREMKTY 77
>gi|171848939|pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From
High Mobility Group Protein B3
Length = 81
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 21 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 77
>gi|341900759|gb|EGT56694.1| hypothetical protein CAEBREN_25379 [Caenorhabditis brenneri]
Length = 699
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
SVA V K GG+KWK+MS DK + AK EK KV YE +MK Y +
Sbjct: 580 SVADVAKKGGQKWKTMSADDKKEWEAKYEKEKVRYEAEMKEYKK 623
>gi|397788083|gb|AFO66690.1| SoxB [Leucosolenia complicata]
Length = 305
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 26 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDE 84
G++WKS++E DKAP++ +A + + +++ D +Y R KP S MS +DE
Sbjct: 43 GDEWKSLAEQDKAPFIEEARRLRAQHQADHPDYKYRPRRKPKPPMGPSSRMPMSNRSDE 101
>gi|392575401|gb|EIW68534.1| hypothetical protein TREMEDRAFT_32029 [Tremella mesenterica DSM
1558]
Length = 116
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++++R + K DHP + S GK GEKWK+MS A+K P+ A K K+ EKD K Y
Sbjct: 42 VQDYRPKIKNDHP-DVSFGETGKLLGEKWKAMSAAEKKPFEDLAAKDKLRAEKDKKAY 98
>gi|148694630|gb|EDL26577.1| mCG10155, isoform CRA_d [Mus musculus]
Length = 220
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PYV KA K K +YEKD+ +Y
Sbjct: 124 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 180
>gi|346986304|ref|NP_001069753.2| high mobility group protein B3 isoform 1 [Bos taurus]
Length = 274
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 180 EFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 234
>gi|426258242|ref|XP_004022724.1| PREDICTED: high mobility group protein B3 [Ovis aries]
Length = 248
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 175 CSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 231
>gi|297813579|ref|XP_002874673.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
gi|297320510|gb|EFH50932.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 74
NKSV V K GE+WK++SE KAPY A+K+K Y ++M+ Y + E T +++EE
Sbjct: 270 NKSVIEVAKMTGEEWKNLSEEQKAPYDQMAKKKKEIYLQEMEGYKITKEEETMSQKKEEE 329
Query: 75 E 75
E
Sbjct: 330 E 330
>gi|148682307|gb|EDL14254.1| mCG114640 [Mus musculus]
Length = 200
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PYV KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 160
>gi|384246550|gb|EIE20040.1| hypothetical protein COCSUDRAFT_83556 [Coccomyxa subellipsoidea
C-169]
Length = 140
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
M EFRE++K DHP+ V+ VG A GE W+S++ KA Y ++ K Y ++ Y
Sbjct: 31 MAEFREKWKVDHPEVNRVSDVGVAAGEAWRSLTPEQKAVYEEQSVGSKATYAAEIAEY 88
>gi|15237042|ref|NP_192846.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266789|sp|Q9T012.1|HMG13_ARATH RecName: Full=High mobility group B protein 13; AltName:
Full=Nucleosome/chromatin assembly factor group D 13
gi|4850287|emb|CAB43043.1| 98b like protein [Arabidopsis thaliana]
gi|7267807|emb|CAB81209.1| 98b like protein [Arabidopsis thaliana]
gi|22136604|gb|AAM91621.1| putative 98b protein [Arabidopsis thaliana]
gi|332657570|gb|AEE82970.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 446
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 74
NKSV V K GE+WK++SE KAPY A+K K Y ++M+ Y R + E +++EE
Sbjct: 268 NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEE 327
Query: 75 E 75
E
Sbjct: 328 E 328
>gi|6680231|ref|NP_032279.1| high mobility group protein B3 [Mus musculus]
gi|20138160|sp|O54879.3|HMGB3_MOUSE RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|2738989|gb|AAC16925.1| high mobility group protein homolog HMG4 [Mus musculus]
gi|15030059|gb|AAH11276.1| Hmgb3 protein [Mus musculus]
gi|26327985|dbj|BAC27733.1| unnamed protein product [Mus musculus]
gi|54035419|gb|AAH83352.1| High mobility group box 3 [Mus musculus]
gi|74146994|dbj|BAE27437.1| unnamed protein product [Mus musculus]
gi|74186760|dbj|BAE34835.1| unnamed protein product [Mus musculus]
gi|74192972|dbj|BAE34988.1| unnamed protein product [Mus musculus]
gi|74194280|dbj|BAE24671.1| unnamed protein product [Mus musculus]
gi|148694626|gb|EDL26573.1| mCG10155, isoform CRA_a [Mus musculus]
gi|148694628|gb|EDL26575.1| mCG10155, isoform CRA_a [Mus musculus]
gi|187957408|gb|AAI58038.1| High mobility group box 3 [Mus musculus]
Length = 200
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PYV KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 160
>gi|350588033|ref|XP_003482539.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
gi|350588037|ref|XP_003482541.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 196
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160
>gi|359062996|ref|XP_003585778.1| PREDICTED: high mobility group protein B3-like, partial [Bos
taurus]
Length = 186
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160
>gi|148694627|gb|EDL26574.1| mCG10155, isoform CRA_b [Mus musculus]
Length = 206
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PYV KA K K +YEKD+ +Y
Sbjct: 112 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 166
>gi|221220328|gb|ACM08825.1| High mobility group protein B3 [Salmo salar]
Length = 203
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K HP N + V K GE W ++++++K PY+AKA K K +Y+KD+ +Y
Sbjct: 110 RPKIKAQHP-NFGIGDVAKKLGEMWNNLTDSNKQPYLAKANKLKEKYQKDVADY 162
>gi|221220618|gb|ACM08970.1| High mobility group protein B3 [Salmo salar]
gi|223646914|gb|ACN10215.1| High mobility group protein B3 [Salmo salar]
gi|223672777|gb|ACN12570.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K HP N + V K GE W ++++++K PY+AKA K K +Y+KD+ +Y
Sbjct: 110 RPKIKAQHP-NFGIGDVAKKLGEMWNNLTDSNKQPYLAKANKLKEKYQKDVADY 162
>gi|221219912|gb|ACM08617.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K HP N + V K GE W ++++++K PY+AKA K K +Y+KD+ +Y
Sbjct: 110 RPKIKAQHP-NFGIGDVAKKLGEMWNNLTDSNKQPYLAKANKLKEKYQKDVADY 162
>gi|45935025|gb|AAS79547.1| At4g11080 [Arabidopsis thaliana]
gi|46367464|emb|CAG25858.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 74
NKSV V K GE+WK++SE KAPY A+K K Y ++M+ Y R + E +++EE
Sbjct: 272 NKSVIEVAKITGEEWKNLSEEQKAPYDKMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEE 331
Query: 75 E 75
E
Sbjct: 332 E 332
>gi|311277128|ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 202
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160
>gi|81673590|gb|AAI09794.1| High-mobility group box 3 [Bos taurus]
gi|296471156|tpg|DAA13271.1| TPA: high mobility group protein B3 isoform 1 [Bos taurus]
Length = 236
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 142 EFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 196
>gi|355782652|gb|EHH64573.1| hypothetical protein EGM_17820, partial [Macaca fascicularis]
Length = 159
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 63 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 119
>gi|332267288|ref|XP_003282615.1| PREDICTED: high mobility group protein B3-like, partial [Nomascus
leucogenys]
Length = 103
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 7 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 63
>gi|403305854|ref|XP_003943467.1| PREDICTED: high mobility group protein B3 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|440910877|gb|ELR60625.1| High mobility group protein B3 [Bos grunniens mutus]
Length = 236
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 140 CSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 196
>gi|410256410|gb|JAA16172.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|2285963|emb|CAA71143.1| high mobility group protein 2a [Homo sapiens]
Length = 200
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|355705241|gb|EHH31166.1| hypothetical protein EGK_21042 [Macaca mulatta]
Length = 200
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKLKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|384489718|gb|EIE80940.1| hypothetical protein RO3G_05645 [Rhizopus delemar RA 99-880]
Length = 176
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + +HP K++ + K GE W +SE +KAPY+ +AEK K+ +EK+ +Y
Sbjct: 70 RPKVAAEHPDMKAIE-IAKLVGEMWNKLSEKEKAPYIKQAEKEKIRFEKENASY 122
>gi|355562304|gb|EHH18898.1| hypothetical protein EGK_19468, partial [Macaca mulatta]
Length = 159
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 63 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 119
>gi|403295522|ref|XP_003938690.1| PREDICTED: high mobility group protein B3-like [Saimiri boliviensis
boliviensis]
Length = 202
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|395754558|ref|XP_002832281.2| PREDICTED: high mobility group protein B3 isoform 2 [Pongo abelii]
Length = 199
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|397466921|ref|XP_003805186.1| PREDICTED: high mobility group protein B3 [Pan paniscus]
gi|410057106|ref|XP_001135676.3| PREDICTED: high mobility group protein B3 isoform 1 [Pan
troglodytes]
gi|426397737|ref|XP_004065063.1| PREDICTED: high mobility group protein B3 isoform 2 [Gorilla
gorilla gorilla]
gi|119619804|gb|EAW99398.1| high-mobility group box 3, isoform CRA_b [Homo sapiens]
Length = 220
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 126 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 180
>gi|410219302|gb|JAA06870.1| high mobility group box 3 [Pan troglodytes]
Length = 199
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|296236643|ref|XP_002763412.1| PREDICTED: high mobility group protein B3-like [Callithrix jacchus]
Length = 203
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|167773205|gb|ABZ92037.1| high-mobility group box 3 [synthetic construct]
Length = 198
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|109132602|ref|XP_001091672.1| PREDICTED: high mobility group protein B3-like isoform 3 [Macaca
mulatta]
gi|109132606|ref|XP_001091441.1| PREDICTED: high mobility group protein B3-like isoform 1 [Macaca
mulatta]
gi|402911729|ref|XP_003918461.1| PREDICTED: high mobility group protein B3 isoform 1 [Papio anubis]
gi|402911731|ref|XP_003918462.1| PREDICTED: high mobility group protein B3 isoform 2 [Papio anubis]
Length = 201
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|71143137|ref|NP_005333.2| high mobility group protein B3 [Homo sapiens]
gi|426397735|ref|XP_004065062.1| PREDICTED: high mobility group protein B3 isoform 1 [Gorilla
gorilla gorilla]
gi|426397739|ref|XP_004065064.1| PREDICTED: high mobility group protein B3 isoform 3 [Gorilla
gorilla gorilla]
gi|85701353|sp|O15347.4|HMGB3_HUMAN RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|47124341|gb|AAH70482.1| HMGB3 protein [Homo sapiens]
gi|117645316|emb|CAL38124.1| hypothetical protein [synthetic construct]
gi|117646384|emb|CAL38659.1| hypothetical protein [synthetic construct]
gi|119619803|gb|EAW99397.1| high-mobility group box 3, isoform CRA_a [Homo sapiens]
gi|410351655|gb|JAA42431.1| high mobility group box 3 [Pan troglodytes]
gi|410351657|gb|JAA42432.1| high mobility group box 3 [Pan troglodytes]
Length = 200
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|164450473|ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus]
gi|146324910|sp|Q32L31.2|HMGB3_BOVIN RecName: Full=High mobility group protein B3
gi|296471157|tpg|DAA13272.1| TPA: high mobility group protein B3 isoform 2 [Bos taurus]
gi|399227521|gb|AFP36466.1| HMGB3 transcript variant 1/2 [Bos taurus]
gi|399227522|gb|AFP36467.1| HMGB3 transcript variant 3 [Bos taurus]
Length = 200
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160
>gi|392354293|ref|XP_003751730.1| PREDICTED: high mobility group protein B3-like isoform 1 [Rattus
norvegicus]
Length = 241
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 145 CSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADY 201
>gi|356510782|ref|XP_003524113.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 165
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR++++ +P KS +GKA +KWK+M+ +KA Y A K+ E++ M +N+
Sbjct: 78 LEDFRKEFQVRNPDVKSKRDIGKASAKKWKTMTYEEKAQYFDIATKKHDEFDSAMAEFNK 137
Query: 61 RQAEGT 66
+
Sbjct: 138 KMISNL 143
>gi|290560936|ref|NP_001166812.1| high mobility group box 3 [Rattus norvegicus]
gi|392354295|ref|XP_003751731.1| PREDICTED: high mobility group protein B3-like isoform 2 [Rattus
norvegicus]
gi|149027076|gb|EDL82825.1| rCG56793 [Rattus norvegicus]
gi|165971283|gb|AAI58740.1| Hmgb3 protein [Rattus norvegicus]
Length = 200
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADY 160
>gi|393236123|gb|EJD43674.1| hypothetical protein AURDEDRAFT_114700 [Auricularia delicata
TFB-10046 SS5]
Length = 125
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54
++++RE+ K+++P + + +GK G KWK MS+ DK PYV +AE+ KV EKD
Sbjct: 39 VKDWRERIKEENP-DAAFGEIGKLMGAKWKEMSDEDKQPYVEQAEEDKVRAEKD 91
>gi|389611269|dbj|BAM19246.1| high mobility group protein D [Papilio polytes]
Length = 120
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+ REQ K D+P K V + K GGE W+SM DK+ + AKA K K +Y KD+++YN
Sbjct: 16 LNSAREQIKADNPGLK-VTEIAKKGGEIWRSME--DKSVWEAKAAKAKEQYTKDLESYN 71
>gi|432951224|ref|XP_004084757.1| PREDICTED: high mobility group protein B2-like [Oryzias latipes]
Length = 221
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + K+D+P S+ + K GE W + S DKAPY AKA K K +YEKD+ Y +
Sbjct: 133 RPKIKEDNP-GISIGDIAKKLGELWATQSAKDKAPYEAKAAKLKEKYEKDVAAYRAKGGS 191
Query: 65 G 65
G
Sbjct: 192 G 192
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K + A+ K Y+++MK Y
Sbjct: 46 REEHKKKHPGTSVNFAEFSKKCSERWKTMSSKEKVKFDELAKTDKARYDREMKTY 100
>gi|291403518|ref|XP_002718101.1| PREDICTED: high mobility group box 3-like [Oryctolagus cuniculus]
Length = 197
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S++DK Y+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSDKQQYITKAAKLKEKYEKDVTDY 160
>gi|414869181|tpg|DAA47738.1| TPA: hypothetical protein ZEAMMB73_864709 [Zea mays]
Length = 198
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 31
M EFR++Y+ HP NKS+ V K GEKW +
Sbjct: 165 MSEFRQEYQVQHPGNKSIVVVSKTAGEKWHA 195
>gi|145540136|ref|XP_001455758.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423566|emb|CAK88361.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 76
+ + + G+KW SMSE +K PYV + + K +Y+ D+K YN + T ++ ++SEK
Sbjct: 69 LTQISQMAGQKWNSMSEEEKQPYVDQYNEAKNKYDGDLKVYNDKHGLNTNEKKRKKSEK 127
>gi|320580355|gb|EFW94578.1| high-mobility group non-histone chromosomal protein, putative
[Ogataea parapolymorpha DL-1]
Length = 91
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK GEKWK++ EA KAPY AKAE K YE + Y + QA
Sbjct: 49 IGKLLGEKWKALDEAGKAPYEAKAEADKKRYELEKSEYTKSQA 91
>gi|3551257|dbj|BAA32827.1| 98b [Daucus carota]
Length = 502
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---AEGTKPEEEE 72
K+V VGK GE+WK+M+E +KAPY A+K K +Y + M+ Y +++ A + EEEE
Sbjct: 313 KNVLEVGKITGEEWKNMTEKEKAPYEEMAKKNKNQYLQQMEVYKKKKDEEAASLQKEEEE 372
Query: 73 ES 74
S
Sbjct: 373 LS 374
>gi|355762621|gb|EHH62030.1| hypothetical protein EGM_20207 [Macaca fascicularis]
Length = 201
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVPKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|255537735|ref|XP_002509934.1| transcription factor, putative [Ricinus communis]
gi|223549833|gb|EEF51321.1| transcription factor, putative [Ricinus communis]
Length = 514
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---AEGTKPEEE 71
NK+V V K GE+WK+M+E K PY A++ K+ Y ++M+ Y +++ A K EEE
Sbjct: 333 NKNVREVAKIAGEQWKNMTEEQKGPYEEMAKRNKLRYMQEMEAYKQKKDEEAMNLKKEEE 392
Query: 72 E 72
E
Sbjct: 393 E 393
>gi|67983563|ref|XP_669154.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56482946|emb|CAH96342.1| hypothetical protein PB000724.01.0 [Plasmodium berghei]
Length = 108
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65
K VA VGK GE W ++ A KAPY KAE KV Y K++K + EG
Sbjct: 51 KEVAQVGKLIGEAWGQLTPAQKAPYEKKAELDKVRYSKEIKLIDTVDLEG 100
>gi|609551|gb|AAA58771.1| HMG-1 [Oncorhynchus mykiss]
Length = 204
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA K K +YEKD+ Y
Sbjct: 107 DFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAY 161
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++M++Y
Sbjct: 19 VQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSY 77
>gi|1085210|pir||S48708 high-mobility-group-1 protein - trout
Length = 204
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA K K +YEKD+ Y
Sbjct: 107 DFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAY 161
>gi|351712970|gb|EHB15889.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 677
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
RE K +HP S+A + K GE WK MS+ K + KAE ++EYEK +K Y R
Sbjct: 561 REMIKSEHP-GISIANLSKKAGEIWKGMSKTMKEEWGHKAEDVRLEYEKAVKEYER 615
>gi|145480005|ref|XP_001426025.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393097|emb|CAK58627.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
+ + + G+KW+SMSE +K PYV + + K +Y D+K YN +Q
Sbjct: 69 LIQISQMAGQKWQSMSEQEKQPYVDQYNQAKSKYNDDVKEYNEKQ 113
>gi|431920081|gb|ELK18129.1| High mobility group protein B3 [Pteropus alecto]
Length = 255
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y
Sbjct: 158 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 212
>gi|389608535|dbj|BAM17877.1| high mobility group protein D [Papilio xuthus]
Length = 121
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+ REQ K D+P + V + K GGE W+SM DK+ + AKA K K +Y KD+++YN
Sbjct: 16 LNSAREQIKADNPGLR-VTEIAKKGGEIWRSME--DKSVWEAKAAKAKEQYTKDLESYN 71
>gi|62321053|dbj|BAD94127.1| recombination signal sequence recognition protein [Arabidopsis
thaliana]
Length = 208
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
R+ KK+HP + VGK G+KW+ MS DK PY AKA+ K Y+ ++ +Y Q
Sbjct: 139 RDNIKKEHP-GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQ 195
>gi|358410870|ref|XP_003581858.1| PREDICTED: high mobility group protein B3-like [Bos taurus]
Length = 197
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLXEKYEKDVADY 160
>gi|440911425|gb|ELR61099.1| High mobility group protein B3, partial [Bos grunniens mutus]
Length = 192
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-NRR 61
EF + K HP S+ V K GE W ++S+++K PY+ KA K K +YEKD+ ++ +R
Sbjct: 107 EFHPKIKSTHP-GISIRDVAKKLGEMWNNLSDSEKQPYINKAAKLK-KYEKDVADHKSRG 164
Query: 62 QAEGTK 67
+ +GTK
Sbjct: 165 KFDGTK 170
>gi|15228471|ref|NP_189515.1| FACT complex subunit SSRP1 [Arabidopsis thaliana]
gi|26454672|sp|Q05153.2|SSRP1_ARATH RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=High mobility group B protein 8; AltName:
Full=Nucleosome/chromatin assembly factor group D 08;
Short=Nucleosome/chromatin assembly factor group D 8;
AltName: Full=Recombination signal sequence recognition
protein 1
gi|11994780|dbj|BAB03170.1| structure-specific recognition protein 1 (HMG1 DNA-binding protein)
[Arabidopsis thaliana]
gi|27311803|gb|AAO00867.1| recombination signal sequence recognition protein, putative
[Arabidopsis thaliana]
gi|332643963|gb|AEE77484.1| FACT complex subunit SSRP1 [Arabidopsis thaliana]
Length = 646
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
R+ KK+HP + VGK G+KW+ MS DK PY AKA+ K Y+ ++ +Y Q
Sbjct: 577 RDNIKKEHP-GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQ 633
>gi|291235047|ref|XP_002737457.1| PREDICTED: sox11-like protein-like [Saccoglossus kowalevskii]
Length = 296
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + + HP + A + K G++WK + E +K PYV +AE+ ++ + ++ +Y R +
Sbjct: 76 RRKISEHHPDMHN-AEISKRLGKRWKMLIEDEKHPYVEEAERLRLLHMQEYPDYKYRPRK 134
Query: 65 GTKPEEEEESEK 76
KP + E + +
Sbjct: 135 KAKPSKPESNSR 146
>gi|229365968|gb|ACQ57964.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE++KK HP + + A K E+WK+MS+ +K + A+ KV YE+DMKNY+
Sbjct: 19 VQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKEKGKFEDMAKLDKVRYERDMKNYD 78
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR + K +HP ++ K GE W S S +K PY KA K K +Y+KD+ Y
Sbjct: 107 DFRPKVKSEHP-GLTIGDTAKKLGEMWNSSSAENKQPYERKAAKLKEKYDKDIVAY 161
>gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]
Length = 204
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
R + K HP + + V K GE W +++++ K PY+AKA K K +Y KD+ +Y R
Sbjct: 110 RPKIKAQHP-SFGIGDVAKKLGEAWNNLTDSSKQPYLAKANKLKEKYRKDVADYKR 164
>gi|124512426|ref|XP_001349346.1| high mobility group protein [Plasmodium falciparum 3D7]
gi|23499115|emb|CAD51195.1| high mobility group protein [Plasmodium falciparum 3D7]
Length = 99
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
K VA VGK GE W +S A KAPY KA+ KV Y K+++ Y ++ E
Sbjct: 51 KDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKNQE 99
>gi|302762326|ref|XP_002964585.1| hypothetical protein SELMODRAFT_166865 [Selaginella moellendorffii]
gi|300168314|gb|EFJ34918.1| hypothetical protein SELMODRAFT_166865 [Selaginella moellendorffii]
Length = 647
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE KK P S V K GE+WK+MS+ +K P+ ++A K Y K M+ YN+ A
Sbjct: 579 RENLKKSTP-GISFKDVAKTLGERWKAMSKDEKEPFESQARVDKERYTKQMQGYNKGNAG 637
Query: 65 GTKPEEE 71
G+ ++E
Sbjct: 638 GSTADDE 644
>gi|302814252|ref|XP_002988810.1| hypothetical protein SELMODRAFT_159743 [Selaginella moellendorffii]
gi|300143381|gb|EFJ10072.1| hypothetical protein SELMODRAFT_159743 [Selaginella moellendorffii]
Length = 647
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE KK P S V K GE+WK+MS+ +K P+ ++A K Y K M+ YN+ A
Sbjct: 579 RENLKKSTP-GISFKDVAKTLGERWKAMSKDEKEPFESQARVDKERYTKQMQGYNKGNAG 637
Query: 65 GTKPEEE 71
G+ ++E
Sbjct: 638 GSTADDE 644
>gi|213515010|ref|NP_001133971.1| High mobility group protein B3 [Salmo salar]
gi|209156012|gb|ACI34238.1| High mobility group protein B3 [Salmo salar]
gi|223648118|gb|ACN10817.1| High mobility group protein B3 [Salmo salar]
Length = 206
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K HP + + V K GE+W ++++A K PY+ KA K K +Y+KD+ +Y
Sbjct: 108 RPKIKAQHP-SLGIGDVAKKLGEQWNNLTDATKQPYLIKANKLKDKYQKDVADY 160
>gi|185135647|ref|NP_001118186.1| high mobility group-T protein [Oncorhynchus mykiss]
gi|123382|sp|P07746.2|HMGT_ONCMY RecName: Full=High mobility group-T protein; Short=HMG-T; AltName:
Full=HMG-T1; Short=HMG-1
gi|64328|emb|CAA26500.1| unnamed protein product [Oncorhynchus mykiss]
Length = 204
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA + K +YEKD+ Y
Sbjct: 107 DFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAY 161
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + + K E+WK+MS +K + A+ KV YE++M++Y
Sbjct: 23 REEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSY 77
>gi|410932269|ref|XP_003979516.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
gi|410933007|ref|XP_003979884.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
Length = 209
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
EFR + K +HP ++ V K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 110 CSEFRPKVKGEHP-GLTIGEVAKKLGELWNNTNSEDKQPYEKKASKLKEKYEKDVAAYRQ 168
Query: 61 RQAEGT 66
+ G+
Sbjct: 169 KTKGGS 174
>gi|68061725|ref|XP_672863.1| high mobility group protein [Plasmodium berghei strain ANKA]
gi|68076125|ref|XP_679982.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490279|emb|CAI01706.1| high mobility group protein, putative [Plasmodium berghei]
gi|56500842|emb|CAH99000.1| hypothetical protein PB001601.02.0 [Plasmodium berghei]
Length = 98
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
K VA VGK GE W ++ A KAPY KAE KV Y K+++ Y +
Sbjct: 51 KEVAQVGKLIGEAWGQLTPAQKAPYEKKAELDKVRYSKEIEEYRK 95
>gi|223649496|gb|ACN11506.1| High mobility group protein B3 [Salmo salar]
Length = 207
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K HP + + V K GE+W ++++A K PY+ KA K K +Y+KD+ +Y
Sbjct: 108 RPKIKAQHP-SLGIGDVAKKLGEQWNNLTDATKQPYLIKANKLKDKYQKDVADY 160
>gi|15236607|ref|NP_194111.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266376|sp|Q9SUP7.1|HMGB6_ARATH RecName: Full=High mobility group B protein 6; AltName:
Full=Nucleosome/chromatin assembly factor group D 06;
Short=Nucleosome/chromatin assembly factor group D 6;
AltName: Full=WRKY transcription factor 53;
Short=AtWRKY53; Short=WRKY DNA-binding protein 53
gi|4454049|emb|CAA23046.1| 98b like protein [Arabidopsis thaliana]
gi|7269229|emb|CAB81298.1| 98b like protein [Arabidopsis thaliana]
gi|18377799|gb|AAL67049.1| putative 98b protein [Arabidopsis thaliana]
gi|20465867|gb|AAM20038.1| putative 98b protein [Arabidopsis thaliana]
gi|22022506|gb|AAM83212.1| putative 98b protein [Arabidopsis thaliana]
gi|332659407|gb|AEE84807.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 456
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
NKSV V K GE+WK++S+ KAPY A+K K Y + M+ Y R
Sbjct: 277 NKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKR 322
>gi|334186863|ref|NP_001190816.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|332659408|gb|AEE84808.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 450
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
NKSV V K GE+WK++S+ KAPY A+K K Y + M+ Y R
Sbjct: 277 NKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKR 322
>gi|70953373|ref|XP_745792.1| high mobility group protein [Plasmodium chabaudi chabaudi]
gi|56526224|emb|CAH87922.1| high mobility group protein, putative [Plasmodium chabaudi
chabaudi]
Length = 98
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
K VA VGK GE W ++ A KAPY KAE KV Y K+++ Y +
Sbjct: 51 KEVAQVGKLIGEAWGQLTPAQKAPYEKKAELDKVRYSKEIEEYKK 95
>gi|221221482|gb|ACM09402.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA + K +YEKD+ Y
Sbjct: 107 DFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKAARLKEKYEKDITAY 161
>gi|170784871|ref|NP_001116308.1| wu:fk52f12 [Danio rerio]
Length = 213
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R Q K +P + + V K GE W +++A+K P++ KA K K +Y+KD+ +Y +
Sbjct: 105 EHRPQIKAQYP-SLGIGDVAKKLGEMWNGLTDANKQPFLMKANKLKDKYQKDVADYKTKS 163
Query: 63 AEG 65
G
Sbjct: 164 KAG 166
>gi|281338637|gb|EFB14221.1| hypothetical protein PANDA_014002 [Ailuropoda melanoleuca]
Length = 168
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
>gi|237842875|ref|XP_002370735.1| high mobility group protein, putative [Toxoplasma gondii ME49]
gi|211968399|gb|EEB03595.1| high mobility group protein, putative [Toxoplasma gondii ME49]
Length = 644
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
R + K P KS + VGK GE+W +S + K Y KAE+ K+ Y+++M YN+++
Sbjct: 586 RAEILKKQPTLKSDIGKVGKMIGEEWAKLSSSQKMTYQKKAEQEKIRYQREMSLYNKKK 644
>gi|239606992|gb|EEQ83979.1| nucleosome binding protein [Ajellomyces dermatitidis ER-3]
Length = 105
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN-RRQAE 64
S VGK GE+WK+++E +APY AKA K YE + +YN RR+A+
Sbjct: 50 SFGQVGKVLGERWKALNEKQRAPYEAKAAADKKRYEDEKASYNARRKAQ 98
>gi|395545985|ref|XP_003774876.1| PREDICTED: high mobility group protein B3-like [Sarcophilus
harrisii]
Length = 201
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
>gi|156843619|ref|XP_001644876.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156115528|gb|EDO17018.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R+ K ++P + S VG+ GEKWK+M++ DK P+ AKAE K YE + + YN +
Sbjct: 34 ETRDIVKAENP-DVSFGQVGRILGEKWKAMTDEDKQPFDAKAEADKKRYESEKELYNATR 92
Query: 63 A 63
A
Sbjct: 93 A 93
>gi|149410917|ref|XP_001509199.1| PREDICTED: high mobility group protein B3-like isoform 1
[Ornithorhynchus anatinus]
gi|345306624|ref|XP_003428488.1| PREDICTED: high mobility group protein B3-like isoform 2
[Ornithorhynchus anatinus]
Length = 201
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
>gi|410256408|gb|JAA16171.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +P SV V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 106 EIRPKIKSTNP-GISVGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
>gi|229367676|gb|ACQ58818.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE++KK HP + + A K E+WK+MS+ K + A+ KV YE+DMKNY+
Sbjct: 19 VQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKGKGKFEDMAKLDKVRYERDMKNYD 78
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR + K +HP ++ K GE W S S +K PY KA K K +Y+KD+ Y
Sbjct: 107 DFRPKVKSEHP-GLTIGDTAKKLGEMWNSSSAENKQPYERKAAKLKEKYDKDIVAY 161
>gi|221485710|gb|EEE23991.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221502922|gb|EEE28632.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 651
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
R + K P KS + VGK GE+W +S + K Y KAE+ K+ Y+++M YN+++
Sbjct: 593 RAEILKKQPSLKSDIGKVGKMIGEEWAKLSSSQKMTYQKKAEQEKIRYQREMSLYNKKK 651
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 53
M +FR+ +K +H N S A K GGEKW S++E +K Y+ KA + K EY K
Sbjct: 123 MNDFRKTFKTEH--NGSFAKDAAKIGGEKWMSLTEDEKKVYLDKAAELKAEYNK 174
>gi|239792337|dbj|BAH72522.1| ACYPI006576 [Acyrthosiphon pisum]
Length = 197
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E RE+ K D+P S + K GGE WK MS +DK+ Y KA K K EY + MK +
Sbjct: 4 FNEAREEIKSDNP-GISFVDIAKKGGELWKKMSTSDKSKYEEKAAKSKEEYIEAMKEF 60
>gi|392333067|ref|XP_003752781.1| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
gi|392353165|ref|XP_001067503.2| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
Length = 212
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 120 EFRPKIKSANP-GISIEDVVKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADY 174
>gi|443724197|gb|ELU12309.1| hypothetical protein CAPTEDRAFT_56147, partial [Capitella teleta]
Length = 196
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+ FR + K P NK + +A GE WK ++E +KAPY AE + +YE+ M+ YN
Sbjct: 110 LAGFRTRMKDKIPVNKELL---RAAGEHWKRLTEVEKAPYEQMAEGERRKYEEAMRQYN 165
>gi|196009331|ref|XP_002114531.1| hypothetical protein TRIADDRAFT_58452 [Trichoplax adhaerens]
gi|190583550|gb|EDV23621.1| hypothetical protein TRIADDRAFT_58452 [Trichoplax adhaerens]
Length = 543
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 8 YKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 67
YKK++ K KS + +G EKW ++S +K Y + +KRK EYE +++ + + T
Sbjct: 410 YKKNNVKGKSFSDIGVTLREKWNNLSTEEKTYYEQELQKRKQEYETNLREFLQ-----TV 464
Query: 68 PEEEEESEKSMSEV 81
PE E + + MS+V
Sbjct: 465 PENERDKTEKMSKV 478
>gi|298706788|emb|CBJ29711.1| ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription
factor [Ectocarpus siliculosus]
Length = 84
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
R K+++P K V + K G +W+ M + DKAP+ KA+K K Y+K+M YN ++A
Sbjct: 8 RAVVKQENPDMK-VTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKA 65
>gi|349604600|gb|AEQ00107.1| High mobility group protein B3-like protein, partial [Equus
caballus]
Length = 118
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y
Sbjct: 21 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 77
>gi|344243983|gb|EGW00087.1| High mobility group protein B4 [Cricetulus griseus]
Length = 106
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 7 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
Q K D+P N SV V KA G+ W S DK PY KA + +Y +D++NY R+Q +
Sbjct: 36 QLKHDNP-NWSVVQVAKATGKMWSMTSNVDKQPYEQKAALLRAKYFEDVENY-RKQFQ 91
>gi|395844161|ref|XP_003794831.1| PREDICTED: uncharacterized protein LOC100953571 [Otolemur
garnettii]
Length = 357
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W S+S+++K PY+ KA + K + EKD+ +Y
Sbjct: 270 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNSLSDSEKQPYITKAAQLKEKDEKDVADY 326
>gi|358337037|dbj|GAA55457.1| structure-specific recognition protein 1 [Clonorchis sinensis]
Length = 723
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
E R++ K SVA V KA GE+W+++ KA Y A+ ++ K YE +M+ Y
Sbjct: 590 FNEHRDEISKSIGNPTSVAEVAKAAGERWRNIDSETKAKYQARVDELKKNYESEMRIYRN 649
Query: 61 RQAEG 65
+ A G
Sbjct: 650 KIASG 654
>gi|354476918|ref|XP_003500670.1| PREDICTED: high mobility group protein B4-like [Cricetulus griseus]
Length = 180
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 7 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
Q K D+P N SV V KA G+ W S DK PY KA + +Y +D++NY R+Q +
Sbjct: 110 QLKHDNP-NWSVVQVAKATGKMWSMTSNVDKQPYEQKAALLRAKYFEDVENY-RKQFQ 165
>gi|410989557|ref|XP_004001438.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Felis catus]
Length = 201
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
>gi|448079731|ref|XP_004194450.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359375872|emb|CCE86454.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VGK GEKWK+MS DK PY KAE K YEK+ Y ++ +
Sbjct: 45 SFGQVGKLLGEKWKAMSSEDKTPYETKAEADKKRYEKEKAEYAKKNS 91
>gi|430813402|emb|CCJ29242.1| unnamed protein product [Pneumocystis jirovecii]
Length = 80
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 2 EEFREQYKKDHPK-----NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
+E RE K ++P N S+ +GK GE+WK+MS D+ PY +A+K K +E
Sbjct: 5 QENRESVKTENPHATFVINMSIGQIGKILGERWKTMSVKDRQPYENRAKKDKQRFE 60
>gi|384496847|gb|EIE87338.1| hypothetical protein RO3G_12049 [Rhizopus delemar RA 99-880]
Length = 157
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + +HP K++ + K GE W +SE +K PYV +A+K KV +EK+ +Y
Sbjct: 61 RPKVVAEHPDMKAIE-IAKFVGEMWNKLSEKEKMPYVKQAQKEKVRFEKENASY 113
>gi|258563818|ref|XP_002582654.1| nonhistone chromosomal protein 6A [Uncinocarpus reesii 1704]
gi|237908161|gb|EEP82562.1| nonhistone chromosomal protein 6A [Uncinocarpus reesii 1704]
Length = 115
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE ++++P S VGK GE+WK++S+ +APY KA K YE + +YN+
Sbjct: 40 RENVREENP-GISFGQVGKLLGERWKALSDKQRAPYEEKAAADKKRYEDEKASYNQ---- 94
Query: 65 GTKPEEEEES 74
PEE+EES
Sbjct: 95 --APEEDEES 102
>gi|168021929|ref|XP_001763493.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685286|gb|EDQ71682.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 483
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 74
NK V + K GE+WKSMS + +AP+ A K K Y +++ Y + +AE + E
Sbjct: 285 NKPVTEIAKILGEEWKSMSPSKRAPFEEIAAKEKERYSVELETYKKNKAEDLSTLDREAE 344
Query: 75 EKS 77
EKS
Sbjct: 345 EKS 347
>gi|57112857|ref|XP_538194.1| PREDICTED: high mobility group protein B3 [Canis lupus familiaris]
gi|338729649|ref|XP_001505130.3| PREDICTED: high mobility group protein B3-like isoform 1 [Equus
caballus]
Length = 201
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
>gi|417396975|gb|JAA45521.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 200
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
>gi|301778413|ref|XP_002924621.1| PREDICTED: high mobility group protein B3-like [Ailuropoda
melanoleuca]
Length = 201
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY 160
>gi|56384901|gb|AAV85889.1| high mobility group 1 protein [Pelodiscus sinensis]
Length = 202
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
>gi|547652|sp|P36194.2|HMGB1_CHICK RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|391636|dbj|BAA03260.1| HMG-1 [Gallus gallus]
Length = 201
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 105 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 159
>gi|444726553|gb|ELW67082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 111
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 57 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAAGDKQPYGKKAAKLKEKYEKDIAAY 111
>gi|449269345|gb|EMC80131.1| High mobility group protein B3 [Columba livia]
Length = 202
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
>gi|349802605|gb|AEQ16775.1| putative high mobility group box 3 [Pipa carvalhoi]
Length = 149
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W +++E +K PY KA K K +YEKD+ +Y
Sbjct: 79 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNEGEKQPYNNKAAKLKEKYEKDVADY 135
>gi|82753906|ref|XP_727864.1| high mobility group protein [Plasmodium yoelii yoelii 17XNL]
gi|23483924|gb|EAA19429.1| high mobility group protein [Plasmodium yoelii yoelii]
Length = 126
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
K VA VGK GE W ++ A KAPY KAE KV Y K+++ Y +
Sbjct: 79 KEVAQVGKLIGEAWGQLTPAQKAPYEKKAELDKVRYSKEIEEYRK 123
>gi|224098124|ref|XP_002198052.1| PREDICTED: high mobility group protein B3 isoform 1 [Taeniopygia
guttata]
gi|326924638|ref|XP_003208532.1| PREDICTED: high mobility group protein B3-like [Meleagris
gallopavo]
gi|449498655|ref|XP_004177286.1| PREDICTED: high mobility group protein B3 isoform 2 [Taeniopygia
guttata]
Length = 202
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
>gi|302847869|ref|XP_002955468.1| hypothetical protein VOLCADRAFT_76727 [Volvox carteri f.
nagariensis]
gi|300259310|gb|EFJ43539.1| hypothetical protein VOLCADRAFT_76727 [Volvox carteri f.
nagariensis]
Length = 645
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
RE+ K ++P + +GK GE+WK M +KAPY A K KV Y + MK Y R
Sbjct: 570 REKVKAENP-GIAFGEIGKMLGERWKGMGADEKAPYEQMAAKDKVRYAEAMKAYKER 625
>gi|302684321|ref|XP_003031841.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
gi|300105534|gb|EFI96938.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
Length = 114
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN-R 60
+++RE+ K ++P + S +GK G KWK M E +K PYVAKA K K E D Y+ +
Sbjct: 43 QDWRERVKAENP-DASFGELGKILGAKWKEMDEDEKKPYVAKAAKDKERAEADKAAYDEK 101
Query: 61 RQAEGTKPEEEEE 73
+ AE ++ +E++E
Sbjct: 102 KSAEASEADEDDE 114
>gi|401412468|ref|XP_003885681.1| High mobility group protein 1, related [Neospora caninum
Liverpool]
gi|325120101|emb|CBZ55655.1| High mobility group protein 1, related [Neospora caninum
Liverpool]
Length = 98
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
R + K P KS + VGK GE+W +S + K Y KAE+ K+ Y+++M YN+++
Sbjct: 40 RAEILKKQPSLKSDIGKVGKMIGEEWAKLSSSQKLTYQKKAEQEKIRYQREMSLYNKKK 98
>gi|729728|sp|P40618.2|HMGB3_CHICK RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|63494|emb|CAA45065.1| HMG2a [Gallus gallus]
Length = 202
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
>gi|145541886|ref|XP_001456631.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424443|emb|CAK89234.1| unnamed protein product [Paramecium tetraurelia]
Length = 235
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESE-- 75
+ + + G KW SMSE +K PYV + K +YE+++K+YN + T ++ ++SE
Sbjct: 78 LTQISQMAGNKWSSMSEQEKKPYVDQYNAAKEKYEQELKDYNEKNGIETNDKKRKKSEKV 137
Query: 76 --KSMSEVNDEDDDE 88
KSM D + D+
Sbjct: 138 DDKSMKSALDHNIDD 152
>gi|312281655|dbj|BAJ33693.1| unnamed protein product [Thellungiella halophila]
Length = 646
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R+ KK HP + VGK G+KW+ MS +K PY AKA+ K Y+ ++ +Y Q
Sbjct: 577 RDNIKKTHP-GIAFGEVGKVLGDKWRQMSAEEKEPYEAKAQVDKKRYKDEISDYKNPQPM 635
Query: 65 GTKPEEEEES 74
E E +S
Sbjct: 636 LVDSENESDS 645
>gi|302755040|ref|XP_002960944.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
gi|300171883|gb|EFJ38483.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
Length = 457
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
N V +GK GE+W+SM E +APY A K Y +M+ YN+++A+
Sbjct: 272 NLKVPQIGKILGEEWRSMDEKARAPYEKIATDAKATYLTEMEAYNKKKAQ 321
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ + +P N + + GE WKS+SE +K PY +K K EY K + +R+AE
Sbjct: 145 REKVRAQNP-NAGIKELSSIFGELWKSVSEEEKKPYEEIYQKNKEEYLKQLVGKEKREAE 203
Query: 65 GTKPEEEEESEKSMSEVNDE 84
K ++E++ K E+ D+
Sbjct: 204 ALKLLQDEKNRKLSKEILDQ 223
>gi|302767286|ref|XP_002967063.1| hypothetical protein SELMODRAFT_144662 [Selaginella moellendorffii]
gi|300165054|gb|EFJ31662.1| hypothetical protein SELMODRAFT_144662 [Selaginella moellendorffii]
Length = 430
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
N V +GK GE+W+SM E +APY A K Y +M+ YN+++A+
Sbjct: 242 NLKVPQIGKILGEEWRSMDEKARAPYEKIATDAKATYLTEMEAYNKKKAQ 291
>gi|355694844|gb|AER99804.1| high-mobility group box 3 [Mustela putorius furo]
Length = 197
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 106 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 162
>gi|85000895|ref|XP_955166.1| high-mobility-group (HMG) protein [Theileria annulata strain
Ankara]
gi|65303312|emb|CAI75690.1| high-mobility-group (HMG) protein, putative [Theileria annulata]
Length = 94
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
R + +D+P + VAAVGK G W S+ E++KAPY AE + YEK+ YN+
Sbjct: 38 RAELVRDNPDLARDVAAVGKLVGAAWNSLDESEKAPYEKLAEADRARYEKEKAAYNK 94
>gi|169409528|gb|ACA57879.1| High mobility group protein B3 (predicted) [Callicebus moloch]
Length = 193
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
EFR + K + S+ V K GE W +++++ K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTN-LGISIGDVAKKLGEMWNNLNDSKKQPYITKAAKLKEKYEKDVADYKS 162
Query: 61 R-QAEGTK 67
+ + +GTK
Sbjct: 163 KGKFDGTK 170
>gi|347921933|ref|NP_990626.2| high mobility group protein B3 [Gallus gallus]
Length = 217
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 121 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 175
>gi|126333240|ref|XP_001376238.1| PREDICTED: FACT complex subunit SSRP1 [Monodelphis domestica]
Length = 712
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK MS+ K + KAE+ K EYEK MK Y+
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEEAKREYEKAMKEYS 615
>gi|156369656|ref|XP_001628091.1| predicted protein [Nematostella vectensis]
gi|156215058|gb|EDO36028.1| predicted protein [Nematostella vectensis]
Length = 180
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R+ KKD+P N S A+ K GE W M++ DK Y A+K KV YE +MK +
Sbjct: 108 RDDVKKDNP-NASGGALSKVLGEMWSKMTDDDKTQYQDMAKKDKVRYESEMKAF 160
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S+A K EKWK+MSE +K +V KA K K ++++M++Y
Sbjct: 29 SLADFSKVSAEKWKNMSEEEKETFVQKAGKDKERFKEEMQSYT 71
>gi|253314412|ref|NP_001156579.1| structure specific recognition protein-like [Acyrthosiphon pisum]
Length = 755
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K D+P S + K GGE WK MS +DK+ Y KA K K EY + MK +
Sbjct: 566 REEIKSDNP-GISFVDIAKKGGELWKKMSTSDKSKYEEKAAKSKEEYIEAMKEF 618
>gi|367043490|ref|XP_003652125.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
gi|346999387|gb|AEO65789.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
Length = 103
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE ++++P S VGK GE+WK++S+ +APY AKA K YE + + YN QA+
Sbjct: 39 RENVREENP-GVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN-AQAD 96
Query: 65 GTKPEEEEES 74
G +EEE S
Sbjct: 97 G---DEEESS 103
>gi|148235321|ref|NP_001089163.1| high mobility group box 3 [Xenopus laevis]
gi|55824420|gb|AAV66347.1| high mobility group B3b protein [Xenopus laevis]
gi|114108280|gb|AAI23148.1| LOC734200 protein [Xenopus laevis]
Length = 201
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ + K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDIAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
>gi|297815172|ref|XP_002875469.1| high mobility group, structure-specific recognition protein 1
[Arabidopsis lyrata subsp. lyrata]
gi|297321307|gb|EFH51728.1| high mobility group, structure-specific recognition protein 1
[Arabidopsis lyrata subsp. lyrata]
Length = 645
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
R+ KK+HP + VGK G+KW+ MS +K PY AKA+ K Y+ ++ +Y Q
Sbjct: 576 RDNIKKEHP-GIAFGEVGKVLGDKWRQMSAEEKEPYEAKAQVDKQRYKDEISDYKNPQ 632
>gi|395544035|ref|XP_003773918.1| PREDICTED: FACT complex subunit SSRP1 [Sarcophilus harrisii]
Length = 712
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK MS+ K + KAE+ K EYEK MK Y+
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKDKKEEWDRKAEEAKREYEKAMKEYS 615
>gi|154284354|ref|XP_001542972.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|150406613|gb|EDN02154.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|240273630|gb|EER37150.1| nucleosome binding protein [Ajellomyces capsulatus H143]
gi|325087527|gb|EGC40837.1| nucleosome binding protein [Ajellomyces capsulatus H88]
Length = 102
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK+++E +APY AKA K YE + +YN
Sbjct: 40 RENVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKAAADKKRYEDEKASYN 93
>gi|403217000|emb|CCK71495.1| hypothetical protein KNAG_0H00800 [Kazachstania naganishii CBS
8797]
Length = 118
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
R+ K ++P N + +GK GEKWK+MS DK PY AKA K YE + + YN
Sbjct: 60 RDIVKSENP-NATFGQLGKLLGEKWKNMSTEDKEPYDAKAAADKKRYESEKELYN 113
>gi|448084218|ref|XP_004195549.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359376971|emb|CCE85354.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VGK GEKWK+M+ DK PY +KAE K YEK+ Y ++ +
Sbjct: 45 SFGQVGKLLGEKWKAMTSDDKTPYESKAEADKKRYEKEKAEYAKKNS 91
>gi|46105649|ref|XP_380561.1| hypothetical protein FG00385.1 [Gibberella zeae PH-1]
gi|110287687|sp|Q4IQX3.1|NHP6_GIBZE RecName: Full=Non-histone chromosomal protein 6
gi|408400690|gb|EKJ79767.1| hypothetical protein FPSE_00047 [Fusarium pseudograminearum
CS3096]
Length = 101
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK+++E +APY AKA K YE + + YN
Sbjct: 39 RENVREENP-GISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYN 92
>gi|242215849|ref|XP_002473736.1| predicted protein [Postia placenta Mad-698-R]
gi|220727131|gb|EED81060.1| predicted protein [Postia placenta Mad-698-R]
Length = 578
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 4 FREQYKKDHPKNKSVAA----VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
FR +Y + H + A + K GE WK +S+A+K PY +AE+ + ++++ Y
Sbjct: 120 FRSEYSRKHAHGGTNKAEEKTLSKRAGETWKLLSDAEKKPYKLRAEQERADHQRRNPGYK 179
Query: 60 RRQAEG 65
R G
Sbjct: 180 YRPRRG 185
>gi|253756810|gb|ACT35162.1| HmgB3y, partial [Monodelphis domestica]
Length = 193
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 101 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAAKLKEKYEKDVADY 157
>gi|254826706|ref|NP_001157151.1| high mobility group protein B3 [Monodelphis domestica]
gi|253756818|gb|ACT35166.1| HmgB3x [Monodelphis domestica]
Length = 201
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAAKLKEKYEKDVADY 160
>gi|225556517|gb|EEH04805.1| non-histone chromosomal protein 6 [Ajellomyces capsulatus G186AR]
Length = 102
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK+++E +APY AKA K YE + +YN
Sbjct: 40 RENVREENP-GISFGQVGKVLGERWKALNEKQRAPYEAKAAADKKRYEDEKASYN 93
>gi|118343940|ref|NP_001071792.1| transcription factor protein [Ciona intestinalis]
gi|70570753|dbj|BAE06615.1| transcription factor protein [Ciona intestinalis]
Length = 310
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 4 FREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
F ++K++P K+ + K GE W S+S+A+K PY A+ + ++E+D++ Y +
Sbjct: 140 FLADFRKNYPGKSDPAKEITKKAGEAWNSLSDAEKTPYYRSAQLVRAKWEQDLEAYKQSV 199
Query: 63 AEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 98
GT S + + D E GE DE
Sbjct: 200 KCGTL--------SRASSIQSDHDPVEMVGEVGLDE 227
>gi|195382183|ref|XP_002049810.1| GJ20542 [Drosophila virilis]
gi|194144607|gb|EDW61003.1| GJ20542 [Drosophila virilis]
Length = 397
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
M + REQ +++HP N++ K GE+W ++E KAPY+ A K K Y++ M +
Sbjct: 94 MNDRREQLRREHP-NRTALEHTKMIGEEWHQLTEDRKAPYMEAAAKDKALYQEQMHKF 150
>gi|351706443|gb|EHB09362.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 226
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K P ++ V K GE W ++S+++K PY+ K K K ++EKD+ +Y
Sbjct: 125 EFRPKIKSTKP-GITIGDVAKKLGEMWNNLSDSEKQPYITKVAKLKEKHEKDVADY 179
>gi|225708606|gb|ACO10149.1| High mobility group protein B2 [Osmerus mordax]
Length = 216
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + K +HP S+ + K GE W + DK PY AKA K K +YEKD+ Y +
Sbjct: 111 RARIKGEHP-GISIGDIAKKLGELWSKQTPKDKVPYEAKAGKLKEKYEKDVAAYRAKSGA 169
Query: 65 G 65
G
Sbjct: 170 G 170
>gi|56756695|gb|AAW26520.1| SJCHGC07008 protein [Schistosoma japonicum]
Length = 213
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E RE+ K SVA V KAGGE W++M K+ Y ++ ++ K +Y++D++ Y
Sbjct: 140 FNENREKIAKSLSGQNSVAEVAKAGGELWRNMDSETKSTYQSRVDELKKKYQEDLRVY 197
>gi|322786659|gb|EFZ13043.1| hypothetical protein SINV_01828 [Solenopsis invicta]
Length = 309
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R++ +K +PK + + + K GE+WK ++E K PY+ +A+ +++++KD +Y R
Sbjct: 80 RKEIQKKNPKMHN-SDISKILGEEWKKLTEEAKGPYIDQAKILRIQHQKDYPDYKYR 135
>gi|359472717|ref|XP_003631191.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group B protein
6-like [Vitis vinifera]
Length = 502
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65
K+V + K GE+WK+M+E K PY A+K K +Y+++MK Y +++ E
Sbjct: 371 KNVLEITKIAGEEWKNMTEKQKRPYEEIAKKNKAKYQEEMKLYKQQKDEA 420
>gi|156097921|ref|XP_001614993.1| high mobility group protein [Plasmodium vivax Sal-1]
gi|148803867|gb|EDL45266.1| high mobility group protein, putative [Plasmodium vivax]
Length = 171
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
K VA VGK GE W +S A K PY KA+ KV Y K+++ Y + + E
Sbjct: 123 KDVAQVGKLVGEAWGQLSAAQKTPYEKKAQLDKVRYSKEIEEYRKTKKE 171
>gi|147815173|emb|CAN65655.1| hypothetical protein VITISV_040565 [Vitis vinifera]
Length = 277
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---AEGTKPEEEE 72
K+V + K GE+WK+M+E K PY A+K K +Y+++M+ Y +++ AE K EEE
Sbjct: 146 KNVLEIAKIAGEEWKNMTEKQKPPYEEIAKKNKAKYQEEMELYKQQKDEAAENLKKGEEE 205
Query: 73 E 73
+
Sbjct: 206 Q 206
>gi|344248925|gb|EGW05029.1| hypothetical protein I79_015964 [Cricetulus griseus]
Length = 164
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 57 EYRPKTKGEHP-GLSLGDVAKKLGEMWNNTAAGDKQPYEKKAAKLKEQYEKDIAAY 111
>gi|443726517|gb|ELU13637.1| hypothetical protein CAPTEDRAFT_158220 [Capitella teleta]
Length = 198
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE++KK HP V A K E+WK+MS +K + AEK K YEKDM Y
Sbjct: 19 VQTCREEHKKKHPGESVVFAEFSKKCAERWKTMSAKEKKRFEEMAEKDKARYEKDMAGYT 78
>gi|355687725|gb|EHH26309.1| hypothetical protein EGK_16239 [Macaca mulatta]
Length = 209
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP++ + A K E+WK+MS +K+ + A+ KV Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEGMAKSDKVRYDREMKNY 78
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
>gi|75218951|sp|O04235.1|SSRP1_VICFA RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein 1
gi|2104679|emb|CAA66480.1| transcription factor [Vicia faba var. minor]
Length = 642
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
RE KK +P S VG+ GEKWK++S +K PY AKA+ K Y+ ++ Y Q
Sbjct: 573 RENLKKTNP-GISFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQ 629
>gi|391638|dbj|BAA03261.1| ORF1 [Gallus gallus]
Length = 298
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 149 REKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 202
>gi|300122042|emb|CBK22616.2| unnamed protein product [Blastocystis hominis]
Length = 224
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E REQ KK++P+ K + + K GEKWK +SE +K PY E K +Y+ M+ Y +
Sbjct: 39 EQREQVKKENPELK-LTEISKVLGEKWKELSEEEKKPYQDAYEADKEKYDLQMEEYKKTH 97
Query: 63 AEGTK 67
G K
Sbjct: 98 PTGKK 102
>gi|118344422|ref|NP_001072036.1| transcription factor protein [Ciona intestinalis]
gi|70570508|dbj|BAE06614.1| transcription factor protein [Ciona intestinalis]
Length = 447
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 4 FREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
F ++K++P K+ + K GE W S+S+A+K PY A+ + ++E+D++ Y +
Sbjct: 277 FLADFRKNYPGKSDPAKEITKKAGEAWNSLSDAEKTPYYRSAQLVRAKWEQDLEAYKQSV 336
Query: 63 AEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDDE 98
GT S + + D E GE DE
Sbjct: 337 KCGTL--------SRASSIQSDHDPVEMVGEVGLDE 364
>gi|226479042|emb|CAX73016.1| structure specific recognition protein 1 [Schistosoma japonicum]
Length = 679
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K SVA V KAGGE W++M K+ Y ++ ++ K +Y++D++ Y
Sbjct: 610 REKIAKSLSGQNSVAEVAKAGGELWRNMDSETKSTYQSRVDELKKKYQEDLRVY 663
>gi|449505047|ref|XP_004162361.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group B protein
13-like [Cucumis sativus]
Length = 500
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---AEGTKPEEE 71
NK+V + K GE+WK+M+E K PY A+K K +Y ++M+ Y +++ A K EEE
Sbjct: 310 NKNVVELAKIAGEEWKNMTEEQKGPYEEMAKKNKEKYMQEMEIYEQKKEEEAAILKKEEE 369
Query: 72 EE 73
E+
Sbjct: 370 EQ 371
>gi|119187239|ref|XP_001244226.1| hypothetical protein CIMG_03667 [Coccidioides immitis RS]
gi|303317166|ref|XP_003068585.1| Nonhistone chromosomal protein 6B, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108266|gb|EER26440.1| Nonhistone chromosomal protein 6B, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038503|gb|EFW20438.1| nucleosome binding protein Nhp6a [Coccidioides posadasii str.
Silveira]
gi|392870942|gb|EAS32789.2| non-histone chromosomal protein 6 [Coccidioides immitis RS]
Length = 102
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++S+ +APY KA K YE + NYN
Sbjct: 40 RENVREENP-GISFGQVGKLLGERWKALSDKQRAPYEEKAAADKKRYEDEKANYN 93
>gi|389582482|dbj|GAB65220.1| high mobility group protein putative [Plasmodium cynomolgi strain
B]
Length = 194
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
K VA VGK GE W +S A K PY KA+ KV Y K+++ Y + + E
Sbjct: 146 KDVAQVGKLVGEAWGKLSAAQKTPYEKKAQLDKVRYSKEIEEYRKTKKE 194
>gi|344299188|ref|XP_003421269.1| PREDICTED: high mobility group protein B3-like [Loxodonta africana]
Length = 200
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAAKLKEKYEKDVADY 160
>gi|342874398|gb|EGU76412.1| hypothetical protein FOXB_13090 [Fusarium oxysporum Fo5176]
Length = 102
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK+++E +APY AKA K YE + + YN
Sbjct: 40 RENVREENP-GISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYN 93
>gi|449464074|ref|XP_004149754.1| PREDICTED: high mobility group B protein 13-like [Cucumis sativus]
Length = 500
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---AEGTKPEEE 71
NK+V + K GE+WK+M+E K PY A+K K +Y ++M+ Y +++ A K EEE
Sbjct: 310 NKNVVELAKIAGEEWKNMTEEQKGPYEEMAKKNKEKYMQEMEIYEQKKEEEAAILKKEEE 369
Query: 72 EE 73
E+
Sbjct: 370 EQ 371
>gi|1806648|gb|AAB41544.1| structure-specific recognition protein 1 [Bos taurus]
Length = 460
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP SV + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 313 REKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 365
>gi|45361297|ref|NP_989226.1| high mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|38969943|gb|AAH63332.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89267209|emb|CAJ81415.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89272910|emb|CAJ82928.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
Length = 211
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
EFR + K +HP ++ + K GE W + + DK PY KA K K +YEKD+ Y +
Sbjct: 108 EFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPYERKAAKLKEKYEKDVAAY---R 163
Query: 63 AEGTKPE 69
A+G KPE
Sbjct: 164 AKG-KPE 169
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMAKADKVRYEREMKTY 78
>gi|388522281|gb|AFK49202.1| unknown [Lotus japonicus]
Length = 187
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
EQ+ KDH NK+ + G EKWKSMS+ K PY A K EY D+
Sbjct: 83 EQFMKDH-DNKNYIEADRMGFEKWKSMSKQVKLPYTFHAFALKNEYVDDL 131
>gi|432113411|gb|ELK35821.1| FACT complex subunit SSRP1 [Myotis davidii]
Length = 709
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK+MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKAMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|340373479|ref|XP_003385269.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator chromatin subfamily E member 1-like
[Amphimedon queenslandica]
Length = 290
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E +KK + V VGK G+KW+ +S+ DK PY + E KV Y+++MK Y
Sbjct: 49 EHFKKSEGTDLKVWEVGKIIGQKWRELSDEDKQPYFDEYEAEKVVYDENMKAY 101
>gi|226288855|gb|EEH44367.1| hypothetical protein PADG_00656 [Paracoccidioides brasiliensis
Pb18]
Length = 66
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S VGK GE+WK+++E +APY AKA K YE + +YN
Sbjct: 15 SFGQVGKVLGERWKALNEKQRAPYEAKAAADKKRYEDEKASYN 57
>gi|410910282|ref|XP_003968619.1| PREDICTED: high mobility group-T protein-like isoform 1 [Takifugu
rubripes]
Length = 196
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|397524101|ref|XP_003832048.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 130
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-N 59
EF + K +P S+ V K GE W ++++++K PYV K K K +YEKD+ +Y +
Sbjct: 40 CSEFCPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLK-KYEKDVADYKS 97
Query: 60 RRQAEGTK 67
+ + +GTK
Sbjct: 98 KGKLDGTK 105
>gi|296200444|ref|XP_002747606.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 210
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKASKLKEKYEKDIAAY-- 162
Query: 61 RQAEG 65
QA+G
Sbjct: 163 -QAKG 166
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKVRYEREMKTY 78
>gi|74628491|sp|Q7S045.1|NHP6_NEUCR RecName: Full=Non-histone chromosomal protein 6
gi|336464617|gb|EGO52857.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2508]
gi|350296712|gb|EGZ77689.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2509]
Length = 103
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++S+ +APY AKA K YE + + YN
Sbjct: 41 RENVREENP-GVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 94
>gi|444726589|gb|ELW67113.1| High mobility group protein B1, partial [Tupaia chinensis]
Length = 219
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E+R + K +HP S+ V K GE W + + D PY KA K K +YEKD+ Y Q
Sbjct: 114 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAAGDTQPYENKAAKLKEKYEKDIAAY---Q 169
Query: 63 AEG 65
A+G
Sbjct: 170 AKG 172
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + S + + K E+WK+MS +K + A+ K YE++MK Y
Sbjct: 26 VQTCREEHKKKHPDASVSFSELSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 84
>gi|302926833|ref|XP_003054372.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
gi|256735313|gb|EEU48659.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
Length = 101
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK+++E +APY AKA K YE + + YN
Sbjct: 39 RENVREENP-GISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYN 92
>gi|261194046|ref|XP_002623428.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|239588442|gb|EEQ71085.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|327354542|gb|EGE83399.1| nonhistone chromosomal protein 6A [Ajellomyces dermatitidis ATCC
18188]
Length = 101
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S VGK GE+WK+++E +APY AKA K YE + +YN
Sbjct: 50 SFGQVGKVLGERWKALNEKQRAPYEAKAAADKKRYEDEKASYN 92
>gi|167384542|ref|XP_001736998.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900416|gb|EDR26737.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 112
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+ E R K++HP K V + K E+WK++ E +K Y AKA+ K +Y+KDM+ Y
Sbjct: 37 LHEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQAKADAAKEQYKKDMEKYT 94
>gi|397475678|ref|XP_003809257.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
Length = 165
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
E R + K +P SV V K GE W ++++++K PY+ KA K K +YEKD+
Sbjct: 83 EIRPKIKSTNP-GISVGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDV 134
>gi|195123073|ref|XP_002006034.1| GI20809 [Drosophila mojavensis]
gi|193911102|gb|EDW09969.1| GI20809 [Drosophila mojavensis]
Length = 388
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
M + REQ +++HP N++ K GE+W +++ KAPY+ A K K Y++ M +
Sbjct: 75 MNDRREQLRREHP-NRTALEHTKMIGEEWHQLTDERKAPYLEAAAKDKALYQEQMHKF 131
>gi|47227840|emb|CAG09003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 199
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|444515932|gb|ELV11007.1| High mobility group protein B3 [Tupaia chinensis]
Length = 212
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K +P S+ V K E W + S+++K PY+ KA K K +Y+KD+ NY
Sbjct: 106 EFHLKIKSTNP-GISIGDVAKKLVEMWNNFSDSEKQPYITKAAKLKEKYKKDVANY 160
>gi|295671102|ref|XP_002796098.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284231|gb|EEH39797.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 103
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S VGK GE+WK+++E +APY AKA K YE + +YN
Sbjct: 52 SFGQVGKVLGERWKALNEKQRAPYEAKAAADKKRYEDEKASYN 94
>gi|211520|gb|AAA48685.1| HMG box (bp. 1499..1757), partial [Gallus gallus]
Length = 669
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 523 REKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 576
>gi|40642799|emb|CAD58843.1| SoxF protein [Ciona intestinalis]
Length = 458
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSM 78
A + K G+KWK MS DK PY+ +AEK ++++ ++ +Y R KP+E +
Sbjct: 208 AELSKMLGKKWKEMSNEDKRPYITEAEKLRMKHMQEHPDYKYRPRR--KPKEPKSRRGKT 265
Query: 79 SEVNDE 84
+ +D+
Sbjct: 266 TAADDK 271
>gi|426245460|ref|XP_004023562.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Ovis
aries]
Length = 703
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP SV + K GE WK MS+ K + KAE+ + EYEK MK Y
Sbjct: 556 REKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWDRKAEEARREYEKAMKEY 608
>gi|57524786|ref|NP_001005796.1| FACT complex subunit SSRP1 [Gallus gallus]
gi|110283005|sp|Q04678.2|SSRP1_CHICK RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53128417|emb|CAG31300.1| hypothetical protein RCJMB04_4n20 [Gallus gallus]
Length = 706
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 560 REKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|225681708|gb|EEH19992.1| nucleosome binding protein [Paracoccidioides brasiliensis Pb03]
Length = 103
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S VGK GE+WK+++E +APY AKA K YE + +YN
Sbjct: 52 SFGQVGKVLGERWKALNEKQRAPYEAKAAADKKRYEDEKASYN 94
>gi|440298630|gb|ELP91261.1| HMG (high mobility group) box domain containing protein, partial
[Entamoeba invadens IP1]
Length = 214
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E RE++++ P+ K + + K E W+ M E DK Y+ KA+K +Y ++MK YN
Sbjct: 129 LNEHREEFREKFPELK-ITEIAKKAAEIWRDMKEEDKQVYLDKAKKATEKYLEEMKTYNE 187
Query: 61 R 61
R
Sbjct: 188 R 188
>gi|410910284|ref|XP_003968620.1| PREDICTED: high mobility group-T protein-like isoform 2 [Takifugu
rubripes]
Length = 184
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSPKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|367020358|ref|XP_003659464.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila
ATCC 42464]
gi|347006731|gb|AEO54219.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila
ATCC 42464]
Length = 101
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++S+ +APY AKA K YE + + YN
Sbjct: 39 RENVREENP-GVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 92
>gi|354488105|ref|XP_003506211.1| PREDICTED: FACT complex subunit SSRP1-like isoform 1 [Cricetulus
griseus]
gi|354488107|ref|XP_003506212.1| PREDICTED: FACT complex subunit SSRP1-like isoform 2 [Cricetulus
griseus]
gi|344253527|gb|EGW09631.1| FACT complex subunit SSRP1 [Cricetulus griseus]
Length = 709
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|54020668|ref|NP_112383.1| FACT complex subunit SSRP1 [Rattus norvegicus]
gi|83305804|sp|Q04931.2|SSRP1_RAT RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53734496|gb|AAH83588.1| Structure specific recognition protein 1 [Rattus norvegicus]
gi|149022436|gb|EDL79330.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149022437|gb|EDL79331.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 709
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|335281869|ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa]
Length = 709
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|155371817|ref|NP_001094511.1| FACT complex subunit SSRP1 [Bos taurus]
gi|151554654|gb|AAI49986.1| SSRP1 protein [Bos taurus]
gi|440894802|gb|ELR47155.1| FACT complex subunit SSRP1 [Bos grunniens mutus]
Length = 709
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP SV + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|111154063|ref|NP_892035.2| FACT complex subunit SSRP1 [Mus musculus]
gi|209862973|ref|NP_001129553.1| FACT complex subunit SSRP1 [Mus musculus]
gi|110283006|sp|Q08943.2|SSRP1_MOUSE RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|74138726|dbj|BAE27178.1| unnamed protein product [Mus musculus]
gi|74144584|dbj|BAE27280.1| unnamed protein product [Mus musculus]
gi|74144625|dbj|BAE27299.1| unnamed protein product [Mus musculus]
gi|74177273|dbj|BAE34555.1| unnamed protein product [Mus musculus]
Length = 708
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|218117885|dbj|BAH03305.1| structure-specific recognition protein 1 [Gallus gallus]
Length = 706
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 560 REKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|297297620|ref|XP_001106417.2| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 210
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP++ + A K E+WK+MS +K+ + A+ KV Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEGMAKSDKVCYDREMKNY 78
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S K GE W S DK PY KA K K +Y+KD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSTGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYQKDIAAY 162
>gi|125851650|ref|XP_001337702.1| PREDICTED: transcription factor SOX-18 [Danio rerio]
Length = 431
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSM 78
A + K G+ WK++S DK P+V +AE+ ++++ +D NY R +P++ + E +
Sbjct: 122 AVLSKMLGQSWKALSTLDKRPFVEEAERLRLQHLQDHPNYKYRPRRKKQPKKMKRVEPGL 181
>gi|82658290|ref|NP_001032501.1| high mobility group protein B2 [Danio rerio]
gi|81294190|gb|AAI07992.1| Zgc:123215 [Danio rerio]
Length = 213
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + K D+P S+ + K GE W +S +K+PY KA K K +YEKD+ Y +A+
Sbjct: 110 RPKVKGDNP-GISIGDIAKKLGEMWSKLSPKEKSPYEQKAMKLKEKYEKDVAAY---RAK 165
Query: 65 GTKPE 69
G KP+
Sbjct: 166 GVKPD 170
>gi|326920276|ref|XP_003206400.1| PREDICTED: FACT complex subunit SSRP1-like [Meleagris gallopavo]
Length = 706
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 560 REKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>gi|147904471|ref|NP_001079045.1| transcription factor Sox-12 [Xenopus laevis]
gi|82133659|sp|Q8AXQ4.1|SOX12_XENLA RecName: Full=Transcription factor Sox-12; AltName: Full=Sox-K1
protein; Short=XSox-K1; AltName: Full=Transcription
factor Sox-33; Short=xSox-33; Short=xSox33
gi|26005788|dbj|BAC41346.1| xSox-K1 ptotein [Xenopus laevis]
gi|213623402|gb|AAI69697.1| Sox-K1 protein [Xenopus laevis]
gi|213627766|gb|AAI69671.1| Sox-K1 protein [Xenopus laevis]
Length = 244
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + ++ G++WK + + DK PYV +AE+ ++++ D NY R
Sbjct: 59 ADISRSLGQRWKLLQDTDKIPYVREAERLRLKHMADYPNYKYR 101
>gi|224058355|ref|XP_002299486.1| high mobility group family [Populus trichocarpa]
gi|222846744|gb|EEE84291.1| high mobility group family [Populus trichocarpa]
Length = 498
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
NK+V V K GE+WK+M+E K PY A+K K +Y ++M+ Y
Sbjct: 321 NKNVLEVAKIAGEEWKNMTEKQKRPYEEIAKKNKEKYTQEMEAY 364
>gi|224072172|ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
gi|222841068|gb|EEE78615.1| high mobility group family [Populus trichocarpa]
Length = 480
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---AEGTKPEEE 71
NKSV V K GE+WK+M+E + PY A+K + +Y ++M+ Y + + A K EEE
Sbjct: 295 NKSVLEVAKIAGEEWKNMTEKRRGPYEEVAKKNREKYMQEMEAYKQTKDEEAMNLKKEEE 354
Query: 72 E 72
E
Sbjct: 355 E 355
>gi|52345682|ref|NP_001004888.1| high mobility group box 3 [Xenopus (Silurana) tropicalis]
gi|49522962|gb|AAH75290.1| MGC88931 protein [Xenopus (Silurana) tropicalis]
gi|89267024|emb|CAJ81774.1| high-mobility group box 3 [Xenopus (Silurana) tropicalis]
Length = 202
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++ +K PY KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDGEKQPYNNKAAKLKEKYEKDVADY 160
>gi|82594869|ref|XP_725606.1| high mobility group protein [Plasmodium yoelii yoelii 17XNL]
gi|23480678|gb|EAA17171.1| high mobility group protein [Plasmodium yoelii yoelii]
Length = 105
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E +D +K VA VGK GE W + E +KAPY KA++ K+ YEK+ Y
Sbjct: 47 EIITRDPSLSKDVATVGKMIGEAWNKLDEREKAPYEKKAQEDKIRYEKEKMEY 99
>gi|348556930|ref|XP_003464273.1| PREDICTED: FACT complex subunit SSRP1-like [Cavia porcellus]
Length = 709
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|296479522|tpg|DAA21637.1| TPA: structure specific recognition protein 1 [Bos taurus]
Length = 709
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP SV + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISVTDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|50548527|ref|XP_501733.1| YALI0C11671p [Yarrowia lipolytica]
gi|74635076|sp|Q6CC79.1|NHP6_YARLI RecName: Full=Non-histone chromosomal protein 6
gi|49647600|emb|CAG82043.1| YALI0C11671p [Yarrowia lipolytica CLIB122]
Length = 103
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R+ + D+P + VGKA GEKWK++++A+K PY KA K YE + Y AE
Sbjct: 40 RDAIRADNP-GIAFGQVGKALGEKWKTLTDAEKVPYEEKATADKKRYEDEKAAYKANAAE 98
>gi|326475470|gb|EGD99479.1| nucleosome binding protein [Trichophyton tonsurans CBS 112818]
Length = 102
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
N + VGK GE+WK++S+ + PY KA K YE + YN RQ
Sbjct: 49 NITFGQVGKVLGERWKALSDKQRVPYEEKAATDKQRYEDEKAAYNSRQ 96
>gi|38047781|gb|AAR09793.1| similar to Drosophila melanogaster HmgZ, partial [Drosophila
yakuba]
Length = 104
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KKD+P +K V + K GGE W+ + DK + KA K K EY K +K Y
Sbjct: 17 LNETREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKAVKEY 71
>gi|71027705|ref|XP_763496.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350449|gb|EAN31213.1| high mobility group protein, putative [Theileria parva]
Length = 94
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
VAAVGK G W S+ E++KAPY AE + YEK+ YN+
Sbjct: 52 VAAVGKLVGAAWNSLDESEKAPYEKLAEADRARYEKEKAAYNK 94
>gi|355563197|gb|EHH19759.1| hypothetical protein EGK_02478, partial [Macaca mulatta]
Length = 121
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K +P S+ V K GE WK++++++K PYV K K ++YEKD+ +Y
Sbjct: 43 EFHPKMKSTNP-GISIGDVAKKLGEMWKNLNDSEKQPYVTKVAKL-MKYEKDVADY 96
>gi|226443200|ref|NP_001140081.1| High mobility group-T protein [Salmo salar]
gi|223649418|gb|ACN11467.1| High mobility group-T protein [Salmo salar]
Length = 345
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA K K +YEKD+ Y
Sbjct: 249 DFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 303
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++M++Y
Sbjct: 161 VQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSY 219
>gi|168047021|ref|XP_001775970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672628|gb|EDQ59162.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 635
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
S GK+ GEKW++MS +DKAPY A A+ + Y+K M Y
Sbjct: 593 SFGEFGKSLGEKWRNMSASDKAPYEADAKVDQERYKKAMAGY 634
>gi|27502780|gb|AAH42502.1| Ssrp1 protein [Mus musculus]
Length = 711
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|8170740|gb|AAB19500.2| HMG1-related DNA-binding protein [Mus sp.]
Length = 708
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|119596659|gb|EAW76253.1| hCG2042470 [Homo sapiens]
Length = 118
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-N 59
EF + K +P S+ V K GE W ++++++K PYV K K K +YEKD+ +Y +
Sbjct: 28 CSEFCPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLK-KYEKDVADYKS 85
Query: 60 RRQAEGTK 67
+ + +GTK
Sbjct: 86 KGKLDGTK 93
>gi|406602438|emb|CCH45979.1| hypothetical protein BN7_5566 [Wickerhamomyces ciferrii]
Length = 90
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
S VGK GE+WK++ + K PY AKAE K YE++ NY +Q
Sbjct: 41 SFGGVGKLLGERWKALDDEGKKPYNAKAEADKKRYEEEKANYQAQQ 86
>gi|281343903|gb|EFB19487.1| hypothetical protein PANDA_011742 [Ailuropoda melanoleuca]
Length = 607
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + E
Sbjct: 545 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGE 603
Query: 65 GTK 67
+K
Sbjct: 604 SSK 606
>gi|405964900|gb|EKC30339.1| Putative transcription factor SOX-14 [Crassostrea gigas]
Length = 339
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 37/59 (62%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKS 77
A + K G++WK+++E D+ P++ +AE+ ++ + ++ +Y R + KP + ES+ S
Sbjct: 63 AEISKRLGKRWKTLNETDRQPFIEEAERLRLLHMQEYPDYKYRPRKKAKPVTKSESKVS 121
>gi|296218242|ref|XP_002755324.1| PREDICTED: FACT complex subunit SSRP1 [Callithrix jacchus]
Length = 709
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|444705434|gb|ELW46861.1| FACT complex subunit SSRP1 [Tupaia chinensis]
Length = 704
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 557 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 609
>gi|72164888|ref|XP_798084.1| PREDICTED: transcription factor Sox-11-B-like [Strongylocentrotus
purpuratus]
Length = 367
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSM 78
A + K G +WK++ E K+PYV +AE+ ++ + +Y R + +KP + E+ K+
Sbjct: 86 AEISKRLGRRWKTLDEVAKSPYVEEAERLRLLHMAQYPDYKYRPRKKSKPTTKPEAAKTT 145
Query: 79 S 79
S
Sbjct: 146 S 146
>gi|344299407|ref|XP_003421377.1| PREDICTED: FACT complex subunit SSRP1 [Loxodonta africana]
Length = 709
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|395858039|ref|XP_003801382.1| PREDICTED: FACT complex subunit SSRP1 [Otolemur garnettii]
Length = 710
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|410973949|ref|XP_003993410.1| PREDICTED: FACT complex subunit SSRP1 [Felis catus]
Length = 709
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|383872505|ref|NP_001244820.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|402893460|ref|XP_003909913.1| PREDICTED: FACT complex subunit SSRP1 [Papio anubis]
gi|355566511|gb|EHH22890.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
mulatta]
gi|355752113|gb|EHH56233.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
fascicularis]
gi|380784229|gb|AFE63990.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|383421069|gb|AFH33748.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|384949008|gb|AFI38109.1| FACT complex subunit SSRP1 [Macaca mulatta]
Length = 709
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|417404085|gb|JAA48818.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 709
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|268575214|ref|XP_002642586.1| C. briggsae CBR-HMG-4 protein [Caenorhabditis briggsae]
Length = 696
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
SVA V K G KWK++ DK + AKAEK K YE +MK Y +
Sbjct: 582 SVADVAKKAGAKWKTLGAEDKKEWEAKAEKDKTRYETEMKEYRK 625
>gi|301774634|ref|XP_002922750.1| PREDICTED: FACT complex subunit SSRP1-like [Ailuropoda melanoleuca]
Length = 709
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|351710199|gb|EHB13118.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 191
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
EF + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+
Sbjct: 104 CSEFHPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDV 157
>gi|170042638|ref|XP_001849025.1| dalao [Culex quinquefasciatus]
gi|167866152|gb|EDS29535.1| dalao [Culex quinquefasciatus]
Length = 694
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
VGK G++W+ + E+DK ++ + E K+EYEK++K Y+ A
Sbjct: 105 VGKIIGQQWRDLPESDKEEFITEYEAEKLEYEKNLKAYHASPA 147
>gi|327296079|ref|XP_003232734.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS
118892]
gi|326465045|gb|EGD90498.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS
118892]
Length = 102
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
N + VGK GE+WK++S+ + PY KA K YE + YN RQ
Sbjct: 49 NITFGQVGKVLGERWKALSDKQRVPYEEKAATDKQRYEDEKAAYNSRQ 96
>gi|392343502|ref|XP_003754903.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65
E+ K+ HP N +VA V KA G W SEADK PY +A + +Y ++ + Y ++ G
Sbjct: 109 EEIKEQHP-NWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYQQCQRG 167
>gi|270268863|gb|ACZ65967.1| Sox8b [Misgurnus anguillicaudatus]
Length = 414
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN--YNRRQAEGTKPEEEEESEK 76
A + K G+ W+ +SE +K P+V +AE+ +V+++KD + Y R+ + KP++ E EK
Sbjct: 119 AELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSMKPDQSEPDEK 178
>gi|340520749|gb|EGR50985.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++++ +APY AKA K YE + + YN
Sbjct: 22 RENVREENP-GISFGQVGKLLGERWKALNDKQRAPYEAKAAADKKRYEDEKQAYN 75
>gi|326918606|ref|XP_003205579.1| PREDICTED: high mobility group protein B2-like [Meleagris
gallopavo]
Length = 246
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K DHP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 144 CSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 200
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A + E+WK+MS +K + A+ K Y+++MKNY
Sbjct: 58 VQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDREMKNY 116
>gi|444725503|gb|ELW66067.1| Trem-like transcript 1 protein [Tupaia chinensis]
Length = 668
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y
Sbjct: 521 REKHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 575
>gi|358372276|dbj|GAA88880.1| nucleosome binding protein (Nhp6a) [Aspergillus kawachii IFO
4308]
Length = 104
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ ++++P S VGK GE+WK++S+ D+ PY KA K YE + +YN
Sbjct: 41 REKVREENP-GISFGQVGKMLGERWKALSDTDRRPYEEKAAADKKRYEDEKASYN 94
>gi|340992807|gb|EGS23362.1| hypothetical protein CTHT_0010300 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 104
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65
S VGK GE+WK++++ +APY AKA K YE + + YN QA+G
Sbjct: 51 SFGQVGKILGERWKALTDKQRAPYEAKAAADKKRYEDEKQAYN-AQADG 98
>gi|156837652|ref|XP_001642846.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113421|gb|EDO14988.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S VG+ GEKWK+++ DK P+ AKAE K YE + + YN
Sbjct: 47 SFGQVGRILGEKWKALTPEDKVPFEAKAEADKKRYESEKELYN 89
>gi|148229870|ref|NP_001080585.1| high mobility group box 3 [Xenopus laevis]
gi|27882654|gb|AAH44009.1| Hmgb3-prov protein [Xenopus laevis]
Length = 202
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P ++ V K GE W ++S+++K PY K K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GITIGDVAKKLGEMWNNLSDSEKQPYNNKGAKLKEKYEKDVADY 160
>gi|241952671|ref|XP_002419057.1| HMG-like DNA binding protein, putative; high mobility group
protein, putative; non-histone DNA-binding protein,
putative [Candida dubliniensis CD36]
gi|223642397|emb|CAX42640.1| HMG-like DNA binding protein, putative [Candida dubliniensis CD36]
Length = 312
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
+E+ K+D P + + + K+ E WKS+SE + PY E ++ Y+++M YN+++
Sbjct: 163 KERIKQDDP---NASDLSKSMTEAWKSLSEERRRPYYKLYEDDRIRYQREMAEYNQKKGN 219
Query: 65 GTKP 68
G +P
Sbjct: 220 GGEP 223
>gi|448530095|ref|XP_003869985.1| Nhp6a non-histone chromatin component [Candida orthopsilosis Co
90-125]
gi|354547725|emb|CCE44460.1| hypothetical protein CPAR2_402610 [Candida parapsilosis]
gi|380354339|emb|CCG23854.1| Nhp6a non-histone chromatin component [Candida orthopsilosis]
Length = 93
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VGKA G+KWK++S DK PY KAE K YEK+ Y ++ +
Sbjct: 46 SFGQVGKALGDKWKALSAEDKVPYENKAEADKKRYEKEKAEYAKKNS 92
>gi|310793467|gb|EFQ28928.1| HMG box protein [Glomerella graminicola M1.001]
Length = 103
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE ++++P S VGK GE+WK++++ +APY AKA K YE + + YN Q E
Sbjct: 41 RENVREENP-GISFGQVGKILGERWKALNDKQRAPYEAKAATDKKRYEDEKQAYNAEQEE 99
>gi|729729|sp|P40622.1|HMG1A_CHITE RecName: Full=Mobility group protein 1A
gi|156587|gb|AAA21712.1| high mobility group protein 1a [Chironomus tentans]
Length = 114
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
RE KK++P K V + K GGE W+ M DK+ + AKA K K EYEK MK + R
Sbjct: 20 RESIKKENPDFK-VTEIAKKGGELWRGMK--DKSEWEAKAAKMKEEYEKAMKEFER 72
>gi|395526464|ref|XP_003765383.1| PREDICTED: high mobility group protein B4 [Sarcophilus harrisii]
Length = 207
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 5 REQYKK---DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
RE Y K D+P + SV V K GE W SE DK PY KA + + +Y +++ Y
Sbjct: 108 REHYTKIKSDNP-HWSVVQVAKLLGEMWSKKSEQDKQPYEEKAARLRAKYHQELMTYRVN 166
Query: 62 QAEGT 66
+G
Sbjct: 167 HGQGC 171
>gi|148673204|gb|EDL05151.1| mCG5336 [Mus musculus]
Length = 216
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAVYDKQPYGKKAAKLKEKYEKDIAAY 162
>gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
Length = 633
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|68063985|ref|XP_673987.1| high mobility group protein [Plasmodium berghei strain ANKA]
gi|56492229|emb|CAH99818.1| high mobility group protein, putative [Plasmodium berghei]
Length = 96
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E +D +K VA VGK GE W + E +KAPY KA++ K+ YEK+ Y
Sbjct: 38 EIITRDPSLSKDVATVGKMIGEAWNKLDEREKAPYEKKAQEDKIRYEKEKMEY 90
>gi|186701221|gb|ACC91248.1| high mobility group HMG1/2 family protein [Arabidopsis halleri]
Length = 456
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+KSV V K GE+WK++S+ KAPY A+K K Y + M+ Y R
Sbjct: 277 SKSVVEVAKITGEEWKNLSDKKKAPYEEVAKKNKETYLQAMEEYKR 322
>gi|345783817|ref|XP_859953.2| PREDICTED: FACT complex subunit SSRP1 isoform 4 [Canis lupus
familiaris]
Length = 711
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 564 REKIKADHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 616
>gi|336272321|ref|XP_003350917.1| hypothetical protein SMAC_04223 [Sordaria macrospora k-hell]
gi|380090684|emb|CCC04854.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 103
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P + VGK GE+WK++S+ +APY AKA K YE + + YN
Sbjct: 41 RENVREENP-GVTFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 94
>gi|242003301|ref|XP_002422686.1| High mobility group protein B2, putative [Pediculus humanus
corporis]
gi|212505508|gb|EEB09948.1| High mobility group protein B2, putative [Pediculus humanus
corporis]
Length = 187
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE++KK HP +N A K E+WK+M + +K + AEK K+ Y+ +M+NY
Sbjct: 21 VQTCREEHKKKHPDENVVFAEFSKKCAERWKTMLDKEKRRFHEMAEKDKLRYDSEMQNYV 80
Query: 60 RRQAE 64
+AE
Sbjct: 81 PSKAE 85
>gi|164422576|ref|XP_957906.2| hypothetical protein NCU09995 [Neurospora crassa OR74A]
gi|157069727|gb|EAA28670.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 95
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++S+ +APY AKA K YE + + YN
Sbjct: 41 RENVREENP-GVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 94
>gi|296810682|ref|XP_002845679.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
gi|238843067|gb|EEQ32729.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
Length = 103
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
N + VGK GE+WK++S+ + PY KA K YE + YN RQ E
Sbjct: 50 NITFGQVGKVLGERWKALSDKQRVPYEEKAATDKQRYEDEKAAYNSRQEE 99
>gi|256080078|ref|XP_002576310.1| structure specific recognition protein [Schistosoma mansoni]
gi|350646026|emb|CCD59303.1| structure specific recognition protein,putative [Schistosoma
mansoni]
Length = 632
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K+ SVA V KA GE W++M K+ Y ++ ++ K +Y++D++ Y
Sbjct: 561 REKIAKNLGGQNSVAEVAKAAGEIWRNMDSTAKSSYQSRVDELKKKYQEDLRIYQSNLGS 620
Query: 65 GTKPEEEEES 74
+P+ +S
Sbjct: 621 NKEPDLSSDS 630
>gi|145233003|ref|XP_001399874.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|317026969|ref|XP_003188583.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|134056796|emb|CAK37704.1| unnamed protein product [Aspergillus niger]
gi|350634700|gb|EHA23062.1| hypothetical protein ASPNIDRAFT_206990 [Aspergillus niger ATCC
1015]
Length = 103
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ ++++P S VGK GE+WK++S+ D+ PY KA K YE + +YN
Sbjct: 40 REKVREENP-GISFGQVGKMLGERWKALSDTDRRPYEEKAAADKKRYEDEKASYN 93
>gi|221053558|ref|XP_002258153.1| high mobility group protein (HMG protein) [Plasmodium knowlesi
strain H]
gi|193807986|emb|CAQ38690.1| high mobility group protein (HMG protein),putative [Plasmodium
knowlesi strain H]
Length = 99
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
++VA VGK GE W +S A K PY KA+ KV Y K+++ Y +
Sbjct: 51 RNVAQVGKLVGEAWGKLSAAQKTPYEKKAQLDKVRYSKEIEEYRK 95
>gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum]
Length = 712
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E R++ K D+P K + + K GGE WK + DK+ + KA K K EY K MK Y
Sbjct: 564 LNEMRDKIKADNPGIK-ITEIAKKGGEMWKELK--DKSEWEGKAAKAKEEYNKAMKEY-- 618
Query: 61 RQAEGTKPEEEEESEK 76
+ G+K E+++ SEK
Sbjct: 619 EASGGSKSEDKKSSEK 634
>gi|332260744|ref|XP_003279440.1| PREDICTED: uncharacterized protein LOC100604184 [Nomascus
leucogenys]
Length = 414
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVG---KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
EFR + K +P + G K GE WK++++++K P++ +A K K +YEKD+
Sbjct: 104 CSEFRPKIKSTNPGKTGIFGFGDVAKKLGEMWKNLNDSEKQPHITQAAKLKEKYEKDV 161
>gi|313227606|emb|CBY22753.1| unnamed protein product [Oikopleura dioica]
Length = 372
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R+ K PK + + + + GEKW+ ++E +K P+V +A++ + ++ K+ +Y R
Sbjct: 21 EQRKILSKQFPKMHN-SEISRNLGEKWRQLNEDEKVPFVDEAKRLRAQHMKEHPDYKYRP 79
Query: 63 AEGTKPEEEEESEKSMSEV 81
+P + ++E + +E+
Sbjct: 80 RRRQRPSDSSKTEAARTEL 98
>gi|118488333|gb|ABK95985.1| unknown [Populus trichocarpa]
Length = 232
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
NK+V V K GE+WK+M+E K PY A+K K +Y ++M+ Y
Sbjct: 55 NKNVLEVAKIAGEEWKNMTEKQKRPYEEIAKKNKEKYTQEMEAY 98
>gi|402077455|gb|EJT72804.1| non-histone chromosomal protein 6 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 101
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++S+ +APY AKA K YE + YN
Sbjct: 39 RENVREENP-GVSFGQVGKILGERWKALSDKQRAPYDAKAAADKKRYEDEKAAYN 92
>gi|298706803|emb|CBJ29726.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 645
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R Q K D+P+ K V + K GEKW + E K PY KA++ K Y+++ Y+ ++A
Sbjct: 568 RAQVKTDNPELK-VTEISKVLGEKWGKLDETQKKPYQDKADEDKARYKRERDAYDSKKA- 625
Query: 65 GTKPEEEEESEKS 77
T+P ++ +S S
Sbjct: 626 ATEPPQQSDSNDS 638
>gi|296418046|ref|XP_002838655.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634611|emb|CAZ82846.1| unnamed protein product [Tuber melanosporum]
Length = 103
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE + D+P + VGK GE+WK++SE + PY AKA K YE + YN
Sbjct: 38 RENVRNDNP-GIAFGQVGKVLGERWKALSEKQRQPYEAKAAADKKRYEDEKAAYN 91
>gi|410917315|ref|XP_003972132.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 214
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K+D+P S+ + K GE W + DKAPY A+A K K +YEKD+ Y
Sbjct: 110 RPKIKEDNP-GISIGDIAKKLGELWSTQGPKDKAPYEARAAKLKEKYEKDVAAY 162
>gi|345320167|ref|XP_001521836.2| PREDICTED: FACT complex subunit SSRP1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK M++ K + KAE+ K EYEK MK Y+
Sbjct: 142 REKIKADHP-GISITDLSKKAGEIWKGMTKEKKEEWDRKAEEAKREYEKAMKEYS 195
>gi|448516014|ref|XP_003867470.1| Nhp10 protein [Candida orthopsilosis Co 90-125]
gi|380351809|emb|CCG22032.1| Nhp10 protein [Candida orthopsilosis]
Length = 335
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
E R+Q ++D P+N + + KA E WK++SE D+ P+ E+ +V Y+K+M YN++
Sbjct: 182 ERLRQQQQED-PENNT-RDLSKAMTEAWKALSEEDRKPFYKLYEEDRVRYQKEMAEYNQK 239
>gi|170068627|ref|XP_001868941.1| brahma-associated protein 111kD [Culex quinquefasciatus]
gi|167864604|gb|EDS27987.1| brahma-associated protein 111kD [Culex quinquefasciatus]
Length = 214
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
VGK G++W+ + E+DK ++ + E K+EYEK++K Y+ A
Sbjct: 105 VGKIIGQQWRDLPESDKEEFITEYEAEKLEYEKNLKAYHASPA 147
>gi|148234528|ref|NP_001080836.1| high mobility group box 1 [Xenopus laevis]
gi|32450384|gb|AAH54148.1| Hmgb1-prov protein [Xenopus laevis]
Length = 211
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +HP ++ + K GE W + + DK P+ KA K K +YEKD+ Y
Sbjct: 108 EFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPFERKAAKLKEKYEKDVAAY 162
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMAKADKVRYEREMKTY 78
>gi|297742312|emb|CBI34461.3| unnamed protein product [Vitis vinifera]
Length = 386
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---AEGTKPEEEE 72
K+V + K GE+WK+M+E K PY A+K K +Y+++M+ Y +++ AE K EEE
Sbjct: 200 KNVLEIAKIAGEEWKNMTEKQKRPYEEIAKKNKAKYQEEMELYKQQKDEEAEDLKKGEEE 259
Query: 73 E 73
+
Sbjct: 260 Q 260
>gi|449272347|gb|EMC82325.1| FACT complex subunit SSRP1 [Columba livia]
Length = 704
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK+MS+ K + KAE + +YEK MK Y+
Sbjct: 560 RERIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDARRDYEKAMKEYS 613
>gi|389585513|dbj|GAB68243.1| high mobility group protein [Plasmodium cynomolgi strain B]
Length = 107
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54
+K VA VGK GE W + E +KAPY KA++ KV YE++
Sbjct: 57 SKDVATVGKMIGEAWNKLDELEKAPYEKKAQEDKVRYERE 96
>gi|171680363|ref|XP_001905127.1| hypothetical protein [Podospora anserina S mat+]
gi|170939808|emb|CAP65034.1| unnamed protein product [Podospora anserina S mat+]
Length = 98
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++S+ +APY AKA K YE + + YN
Sbjct: 41 RENVREENP-GVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 94
>gi|449270893|gb|EMC81539.1| High mobility group protein B2 [Columba livia]
Length = 207
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K DHP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A + E+WK+MS +K + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDREMKNY 78
>gi|392883890|gb|AFM90777.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NYN
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNYN 79
>gi|37779034|gb|AAP20177.1| high mobility group protein [Pagrus major]
Length = 200
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K + A+ KV YE++MKNY
Sbjct: 19 VQTCREEHKKKHPEASVNFAEFSKRCSERWKTMSPKEKGKFEDMAKLDKVRYEREMKNY 77
>gi|355691926|gb|EHH27111.1| hypothetical protein EGK_17228 [Macaca mulatta]
Length = 196
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
EF + K +P S+ + K GE WK++++++K PY+ KA K K +YEKD+
Sbjct: 93 EFCPKMKSTNP-GISIGDMVKKLGEMWKNLNDSEKQPYITKAAKLKEKYEKDV 144
>gi|24657271|ref|NP_726106.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|24657274|ref|NP_726107.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|194882002|ref|XP_001975102.1| GG20749 [Drosophila erecta]
gi|195346531|ref|XP_002039811.1| GM15692 [Drosophila sechellia]
gi|195486382|ref|XP_002091485.1| HmgZ [Drosophila yakuba]
gi|195585528|ref|XP_002082533.1| GD25171 [Drosophila simulans]
gi|729741|sp|Q06943.1|HMGZ_DROME RecName: Full=High mobility group protein Z; Short=HMG-Z
gi|296945|emb|CAA50469.1| Hmg-Z protein [Drosophila melanogaster]
gi|7291329|gb|AAF46758.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|21064429|gb|AAM29444.1| RE28596p [Drosophila melanogaster]
gi|21645314|gb|AAM70934.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|190658289|gb|EDV55502.1| GG20749 [Drosophila erecta]
gi|194135160|gb|EDW56676.1| GM15692 [Drosophila sechellia]
gi|194177586|gb|EDW91197.1| HmgZ [Drosophila yakuba]
gi|194194542|gb|EDX08118.1| GD25171 [Drosophila simulans]
gi|220948296|gb|ACL86691.1| HmgZ-PA [synthetic construct]
Length = 111
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KKD+P +K V + K GGE W+ + DK + KA K K EY K +K Y
Sbjct: 17 LNETREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKAVKEY 71
>gi|384491850|gb|EIE83046.1| hypothetical protein RO3G_07751 [Rhizopus delemar RA 99-880]
Length = 101
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
R K+++PK S +GK GE+WK++SE +K PY+ KAE K YE
Sbjct: 48 RPTVKEENPKA-SFGEIGKILGERWKALSEEEKKPYLKKAEDDKKRYE 94
>gi|109511234|ref|XP_228669.3| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|109514134|ref|XP_001066357.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|392356064|ref|XP_003752207.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 9 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
K+ HP N +VA V KA G W SEADK PY +A + +Y
Sbjct: 112 KEQHP-NWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153
>gi|401402785|ref|XP_003881334.1| high mobility group protein, related [Neospora caninum Liverpool]
gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool]
Length = 94
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
RE+ + +P+ KS +A VGK GE W +S+A K PY +KA K YE++M Y +
Sbjct: 35 REEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKKPYESKAVADKARYEREMIAYKK 91
>gi|426397135|ref|XP_004064781.1| PREDICTED: high mobility group protein B3-like [Gorilla gorilla
gorilla]
Length = 221
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ + K GE W + S+ +K PY+ KA K +YEKD+ +Y
Sbjct: 123 CSEFRPKIKSTNP-GISIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADY 179
>gi|444518140|gb|ELV11977.1| High mobility group protein B3 [Tupaia chinensis]
Length = 198
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
EFR + K +P S+ V K G+ W ++S+++K PY+ KA K K +YEKD+
Sbjct: 108 EFRLKIKSTNP-GISIGDVAKKLGDVWNNLSDSEKQPYITKAAKLK-KYEKDV 158
>gi|211929|gb|AAA48819.1| high-mobility group-2 protein [Gallus gallus]
Length = 207
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K DHP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
>gi|255720981|ref|XP_002545425.1| hypothetical protein CTRG_00206 [Candida tropicalis MYA-3404]
gi|240135914|gb|EER35467.1| hypothetical protein CTRG_00206 [Candida tropicalis MYA-3404]
Length = 66
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VGK GEKWK+++ DK PY KAE K YEK+ Y ++ +
Sbjct: 19 SFGQVGKLLGEKWKALTPEDKTPYENKAEADKKRYEKEKAEYAKKNS 65
>gi|145536343|ref|XP_001453899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421632|emb|CAK86502.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 76
+ + + G KW SMSE +K PY+ + K +Y++++K+YN + T ++ ++SEK
Sbjct: 79 LTQISQMAGNKWTSMSEQEKKPYLDQYNAAKEKYDQELKDYNEKNGIETNDKKRKKSEK 137
>gi|303282319|ref|XP_003060451.1| high mobility group family B protein [Micromonas pusilla CCMP1545]
gi|226457922|gb|EEH55220.1| high mobility group family B protein [Micromonas pusilla CCMP1545]
Length = 922
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + K++P+ K+ + A G KWK++ DKA Y AKA K +Y+++ K+Y +A
Sbjct: 823 RAKVVKENPEMKATEIIA-AIGAKWKAIGAKDKAKYEAKATAAKEKYDEEKKSYEASKAA 881
Query: 65 GTKPEEEEESE 75
GT+ E EE +E
Sbjct: 882 GTESESEEPAE 892
>gi|407926962|gb|EKG19868.1| High mobility group HMG1/HMG2 [Macrophomina phaseolina MS6]
Length = 106
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+ R++ ++++P K VGK GE+WK++SE +APY AKA K YE + YN
Sbjct: 40 DMRDKVREENPGIK-FGEVGKILGERWKALSEKQRAPYEAKAANDKKRYEDEKAAYN 95
>gi|403254821|ref|XP_003920153.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 679 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 731
>gi|71662243|ref|XP_818131.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70883364|gb|EAN96280.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
F ++K HP + SV KA G WK++S+ K PY A A+K K Y+++M
Sbjct: 215 FVSDFRKKHP-DLSVTETSKAAGAAWKALSDDMKKPYEAMAQKDKERYQREM 265
>gi|270014157|gb|EFA10605.1| hypothetical protein TcasGA2_TC012866 [Tribolium castaneum]
Length = 840
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E R++ K D+P K + + K GGE WK + DK+ + KA K K EY K MK Y
Sbjct: 692 LNEMRDKIKADNPGIK-ITEIAKKGGEMWKELK--DKSEWEGKAAKAKEEYNKAMKEY-- 746
Query: 61 RQAEGTKPEEEEESEK 76
+ G+K E+++ SEK
Sbjct: 747 EASGGSKSEDKKSSEK 762
>gi|221220042|gb|ACM08682.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA K K +YEKD+ Y
Sbjct: 107 DFRPQVKVETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 161
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++M++Y
Sbjct: 19 VQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSY 77
>gi|449501868|ref|XP_004174468.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1
[Taeniopygia guttata]
Length = 705
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK+MS+ K + KAE + +YEK MK Y+
Sbjct: 560 REKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDARRDYEKAMKEYS 613
>gi|118343938|ref|NP_001071793.1| transcription factor protein [Ciona intestinalis]
gi|70570759|dbj|BAE06616.1| transcription factor protein [Ciona intestinalis]
Length = 164
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
M + R++ K++P + S+ + K G+KW+ S DK P+ KA K + EY K ++ YN
Sbjct: 32 MNDCRQKVIKENP-SLSITEISKLVGKKWRETSTKDKEPFNKKAAKLREEYNKKLEKYN 89
>gi|387016392|gb|AFJ50315.1| High mobility group protein B1 [Crotalus adamanteus]
Length = 215
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + S DK P+ KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTSSEDKQPFEKKAGKLKEKYEKDIAAY 162
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMARADKVRYEREMKTY 78
>gi|225426010|ref|XP_002273198.1| PREDICTED: high mobility group B protein 13-like [Vitis vinifera]
Length = 505
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ---AEGTKPEEEE 72
K+V + K GE+WK+M+E K PY A+K K +Y+++M+ Y +++ AE K EEE
Sbjct: 319 KNVLEIAKIAGEEWKNMTEKQKRPYEEIAKKNKAKYQEEMELYKQQKDEEAEDLKKGEEE 378
Query: 73 E 73
+
Sbjct: 379 Q 379
>gi|221221758|gb|ACM09540.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA K K +YEKD+ Y
Sbjct: 107 DFRPQVKVETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 161
>gi|293351259|ref|XP_002727736.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 9 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
K+ HP N +VA V KA G W SEADK PY +A + +Y
Sbjct: 112 KEQHP-NWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153
>gi|429860623|gb|ELA35353.1| nucleosome binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 103
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++++ +APY AKA K YE + + YN
Sbjct: 41 RENVREENP-GISFGQVGKILGERWKALNDKQRAPYEAKAAADKKRYEDEKQAYN 94
>gi|62638360|ref|XP_574279.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|109460525|ref|XP_001074365.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K EYEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEEYEKDIAAY 162
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++K HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
>gi|402882719|ref|XP_003904882.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Papio anubis]
Length = 132
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K +P S+ V K GE WK++++++K PYV K K ++YEKD+ +Y
Sbjct: 41 CSEFHPKMKSTNP-GISIGDVAKKLGEMWKNLNDSEKQPYVTKVAKL-MKYEKDVADY 96
>gi|332026217|gb|EGI66359.1| SWI/SNF-related matrix-associated actin-dependent regulator
chromatin subfamily E member 1 [Acromyrmex echinatior]
Length = 756
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK G+ W+ + E DK ++ + E KVEYEK +K Y+ A
Sbjct: 106 IGKIIGQMWRDLPEEDKTEFIEEYETEKVEYEKSLKTYHNSPA 148
>gi|395753165|ref|XP_003779555.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
Length = 215
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAVKLKEKYEKDIAAY 162
>gi|358379174|gb|EHK16855.1| hypothetical protein TRIVIDRAFT_217092 [Trichoderma virens
Gv29-8]
Length = 102
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++++ +APY AKA K YE + + YN
Sbjct: 41 RENVREENP-GISFGQVGKLLGERWKALNDKQRAPYEAKAAADKKRYEDEKQAYN 94
>gi|320091041|gb|ADW08807.1| high mobility group box X [Lethenteron camtschaticum]
Length = 225
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
+FR Q K D+P + + K GE W + +KAPY KA K +Y+KD+ Y R
Sbjct: 112 DFRPQIKADNP-GMVIGTIAKRLGEMWGRQTNENKAPYEHKANILKEKYKKDVAAYQRSG 170
Query: 63 AEGT 66
A +
Sbjct: 171 ASAS 174
>gi|50421411|ref|XP_459256.1| DEHA2D17710p [Debaryomyces hansenii CBS767]
gi|74631679|sp|Q6BRB4.1|NHP6_DEBHA RecName: Full=Non-histone chromosomal protein 6
gi|49654923|emb|CAG87430.1| DEHA2D17710p [Debaryomyces hansenii CBS767]
Length = 92
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VGK GEKWK+++ DK PY KA+ K YEK+ Y ++ A
Sbjct: 45 SFGQVGKLLGEKWKALTPEDKIPYENKADTDKKRYEKEKAEYAKKNA 91
>gi|391345046|ref|XP_003746804.1| PREDICTED: high mobility group protein DSP1-like [Metaseiulus
occidentalis]
Length = 186
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1 MEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE+YKK HP N A K E+WK+M+E +K + A K K YE +M Y
Sbjct: 18 VQTCREEYKKMHPNENVVFAEFSKKCAERWKTMNEPEKQRFQLMAAKDKKRYEDEMSTYV 77
Query: 60 RRQA 63
++A
Sbjct: 78 PKEA 81
>gi|148922135|gb|AAI46745.1| Zgc:165618 protein [Danio rerio]
Length = 165
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|225195617|gb|ACN82086.1| high-mobility group box 1 [Carassius auratus]
gi|225195619|gb|ACN82087.1| high-mobility group box 1 [Megalobrama amblycephala]
gi|225195623|gb|ACN82089.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + K E+WK+MS +K + A++ KV YE++MKNY
Sbjct: 8 VQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYEREMKNY 66
>gi|221221148|gb|ACM09235.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA K K +YEKD+ Y
Sbjct: 107 DFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 161
>gi|70946314|ref|XP_742884.1| high mobility group protein [Plasmodium chabaudi chabaudi]
gi|56522109|emb|CAH79930.1| high mobility group protein, putative [Plasmodium chabaudi
chabaudi]
Length = 102
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E +D +K VA VGK GE W + E +KAPY KA++ K+ YEK+ Y
Sbjct: 44 EIITRDPSLSKDVATVGKMIGEAWNKLDEREKAPYEKKAQEDKLRYEKEKMEY 96
>gi|440298682|gb|ELP91313.1| hypothetical protein EIN_153200 [Entamoeba invadens IP1]
Length = 185
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E R + K+ P K V V K GE WK+M E DK PY KA+K K ++ +MK Y
Sbjct: 111 LNEHRAEIKEKFPDMK-VTEVAKKAGENWKAMGEEDKKPYQDKADKAKETWKTEMKKY 167
>gi|347441690|emb|CCD34611.1| similar to transcription factor HMG [Botryotinia fuckeliana]
Length = 101
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S VGK GE+WK+++E + PY A K K YE++ NYN
Sbjct: 50 SFGQVGKVLGERWKALNEKQRGPYEESAAKDKKRYEEEKANYN 92
>gi|223646906|gb|ACN10211.1| High mobility group-T protein [Salmo salar]
gi|223672769|gb|ACN12566.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA K K +YEKD+ Y
Sbjct: 107 DFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 161
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++M++Y
Sbjct: 19 VQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSY 77
>gi|116206850|ref|XP_001229234.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183315|gb|EAQ90783.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 96
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S VGK GE+WK++S+ +APY AKA K YE + + YN
Sbjct: 51 SFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 93
>gi|358391632|gb|EHK41036.1| hypothetical protein TRIATDRAFT_259074 [Trichoderma atroviride
IMI 206040]
Length = 101
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++++ +APY AKA K YE + + YN
Sbjct: 40 RENVREENP-GISFGQVGKLLGERWKALNDKQRAPYEAKAAADKKRYEDEKQAYN 93
>gi|119491564|ref|XP_001263303.1| nucleosome binding protein (Nhp6a), putative [Neosartorya
fischeri NRRL 181]
gi|119411463|gb|EAW21406.1| nucleosome binding protein (Nhp6a), putative [Neosartorya
fischeri NRRL 181]
Length = 104
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
S VGK GE+WK++S+ D+ PY KA K YE + +YN Q E
Sbjct: 51 SFGQVGKMLGERWKALSDTDRRPYEEKAAADKKRYEDEKASYNAAQDE 98
>gi|432889764|ref|XP_004075350.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 194
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|363755760|ref|XP_003648095.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892131|gb|AET41278.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
Length = 94
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VG+ GEKWK++S+ +K PY AKAE K YE + + YN +A
Sbjct: 47 SFGQVGRVLGEKWKALSDDEKQPYEAKAEADKKRYESEKELYNATKA 93
>gi|254580675|ref|XP_002496323.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
gi|238939214|emb|CAR27390.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
Length = 98
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VG+ GEKWK+++ +K PY AKAE K YE + + YN +A
Sbjct: 47 TFGQVGRILGEKWKALTPDEKTPYEAKAEADKKRYESEKELYNATRA 93
>gi|45187563|ref|NP_983786.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|74694642|sp|Q75B82.1|NHP6_ASHGO RecName: Full=Non-histone chromosomal protein 6
gi|44982301|gb|AAS51610.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|374106998|gb|AEY95906.1| FADL310Wp [Ashbya gossypii FDAG1]
Length = 94
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VG+ GEKWK++S+ +K PY AKAE K YE + + YN +A
Sbjct: 47 SFGQVGRVLGEKWKALSDDEKQPYEAKAEADKKRYESEKELYNATKA 93
>gi|383862615|ref|XP_003706779.1| PREDICTED: uncharacterized protein LOC100879979 [Megachile
rotundata]
Length = 767
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK G+ W+ + E DK ++ + E KVEYEK +K Y+ A
Sbjct: 106 IGKIIGQMWRDLPEEDKTEFIEEYEAEKVEYEKSLKTYHNSPA 148
>gi|380014712|ref|XP_003691364.1| PREDICTED: uncharacterized protein LOC100865252 [Apis florea]
Length = 716
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK G+ W+ + E DK ++ + E KVEYEK +K Y+ A
Sbjct: 106 IGKIIGQMWRDLPEEDKTEFIEEYEAEKVEYEKSLKTYHNSPA 148
>gi|328716392|ref|XP_003245920.1| PREDICTED: hypothetical protein LOC100572600 [Acyrthosiphon pisum]
Length = 346
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY----NRRQAEGTKPEEEEES 74
A + K G+ W+ +S DK P++ +AEK +V ++ +Y RR+A P+ +++S
Sbjct: 104 AELSKTLGQLWRLLSGDDKQPFIEEAEKLRVLHKNRYPDYKYQPRRRKAAKGIPKIQDKS 163
Query: 75 EKSMSEVND 83
+ SEVND
Sbjct: 164 KHDKSEVND 172
>gi|213513415|ref|NP_001133101.1| high mobility group protein B1 [Salmo salar]
gi|197631937|gb|ACH70692.1| high-mobility group box 1 [Salmo salar]
Length = 203
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA K K +YEKD+ Y
Sbjct: 107 DFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAY 161
>gi|350413525|ref|XP_003490017.1| PREDICTED: hypothetical protein LOC100744180 [Bombus impatiens]
Length = 753
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK G+ W+ + E DK ++ + E KVEYEK +K Y+ A
Sbjct: 106 IGKIIGQMWRDLPEEDKTEFIEEYEAEKVEYEKSLKTYHNSPA 148
>gi|313217077|emb|CBY38259.1| unnamed protein product [Oikopleura dioica]
Length = 340
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 35/56 (62%)
Query: 26 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEV 81
GEKW+ ++E +K P+V +A++ + ++ K+ +Y R +P + ++E + +E+
Sbjct: 11 GEKWRQLNEDEKVPFVDEAKRLRAQHMKEHPDYKYRPRRRQRPSDSSKTEAARTEL 66
>gi|195431780|ref|XP_002063906.1| GK15658 [Drosophila willistoni]
gi|194159991|gb|EDW74892.1| GK15658 [Drosophila willistoni]
Length = 112
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KKD+P +K V + K GGE W+ + DK + KA K+K EY K +K Y
Sbjct: 17 LNENREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKQKEEYNKAVKEY 71
>gi|3126870|gb|AAC16000.1| Sox9 homolog [Calotes versicolor]
Length = 258
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 116 AQLSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 175
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 176 SEQTHISPN 184
>gi|49258306|pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 79
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 22 EYRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 76
>gi|431918516|gb|ELK17735.1| 182 kDa tankyrase-1-binding protein [Pteropus alecto]
Length = 2600
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKLDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>gi|409043132|gb|EKM52615.1| hypothetical protein PHACADRAFT_164552 [Phanerochaete carnosa
HHB-10118-sp]
Length = 115
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+++RE+ K ++P + S +GK G KWK + E +K PY+ +AE+ K E++ K+Y+
Sbjct: 42 QDWRERVKAENP-DASFGELGKLLGTKWKELDEEEKKPYIEQAERDKARAEREKKDYD 98
>gi|340710108|ref|XP_003393638.1| PREDICTED: hypothetical protein LOC100651274 [Bombus terrestris]
Length = 747
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK G+ W+ + E DK ++ + E KVEYEK +K Y+ A
Sbjct: 106 IGKIIGQMWRDLPEEDKTEFIEEYEAEKVEYEKSLKTYHNSPA 148
>gi|307187667|gb|EFN72639.1| SWI/SNF-related matrix-associated actin-dependent regulator
chromatin subfamily E member 1 [Camponotus floridanus]
Length = 741
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK G+ W+ + E DK ++ + E KVEYEK +K Y+ A
Sbjct: 106 IGKIIGQMWRDLPEEDKTEFIEEYEAEKVEYEKSLKTYHNSPA 148
>gi|149245546|ref|XP_001527250.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449644|gb|EDK43900.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 187
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
+E+ K D P++K ++ + E WKS+SE ++ PY E +V Y+++M YNR++ +
Sbjct: 86 KERLKLDDPESKDLS---RTMTEAWKSLSEEERRPYYKLYEDDRVRYQREMDEYNRKKEQ 142
Query: 65 GTK 67
TK
Sbjct: 143 KTK 145
>gi|290986470|ref|XP_002675947.1| predicted protein [Naegleria gruberi]
gi|284089546|gb|EFC43203.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
+ +R+ ++P K V V K GEKW M++A+KAPYV KA + K Y + Y+
Sbjct: 132 QTYRKSLVAENPTLK-VTEVAKLVGEKWGKMNDAEKAPYVNKAAELKAAYNIEKSKYDAT 190
Query: 62 Q 62
Q
Sbjct: 191 Q 191
>gi|302309760|ref|XP_002999554.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049084|emb|CAR57991.1| unnamed protein product [Candida glabrata]
Length = 93
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ +G+ GE+WK+++ DK PY AKAE K YE + + YN +A
Sbjct: 47 TFGQIGRLLGERWKALTAEDKQPYEAKAEADKKRYESEKELYNATRA 93
>gi|307195541|gb|EFN77427.1| SWI/SNF-related matrix-associated actin-dependent regulator
chromatin subfamily E member 1 [Harpegnathos saltator]
Length = 777
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK G+ W+ + E DK ++ + E KVEYEK +K Y+ A
Sbjct: 106 IGKIIGQMWRDLPEEDKTEFIEEYEAEKVEYEKSLKTYHNSPA 148
>gi|157129203|ref|XP_001655323.1| high mobility group B1, putative [Aedes aegypti]
gi|108872320|gb|EAT36545.1| AAEL011380-PA [Aedes aegypti]
Length = 278
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP+ + + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 51 VQTCREEHKKKHPEEQVIFAEFSRKCAERWKTMLDKEKQRFHEMAEKDKQRYELEMQNY 109
>gi|392356036|ref|XP_003752196.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65
E+ K+ HP N VA V KA G W SEADK PY +A + +Y ++ + Y ++ G
Sbjct: 109 EEIKEQHP-NWPVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYQQCQRG 167
>gi|328780490|ref|XP_395543.4| PREDICTED: hypothetical protein LOC412077 [Apis mellifera]
Length = 718
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK G+ W+ + E DK ++ + E KVEYEK +K Y+ A
Sbjct: 106 IGKIIGQMWRDLPEEDKTEFIEEYEAEKVEYEKSLKTYHNSPA 148
>gi|410966739|ref|XP_003989887.1| PREDICTED: high mobility group protein B4 [Felis catus]
Length = 193
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 7 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66
Q K+++P N SV V KA G+ W + + A+K PY +A + +Y++D++ Y R+Q +
Sbjct: 112 QLKRENP-NWSVVQVAKASGKMWSATTGAEKQPYEQRAALLRAKYQEDLEIY-RKQRKAN 169
Query: 67 KPEEEEESEKSMSEVNDEDDDEEGS 91
K + S K+ E D +GS
Sbjct: 170 K--GHQRSAKNQRRGKMESDKADGS 192
>gi|449269673|gb|EMC80424.1| High mobility group protein B1 [Columba livia]
Length = 209
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ K+ YEK+MKNY
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNY 78
>gi|19114226|ref|NP_593314.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74627097|sp|P87057.1|NHP6_SCHPO RecName: Full=Non-histone chromosomal protein 6
gi|2058376|emb|CAB08172.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe]
Length = 108
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K D+P + + +G G++WK ++ ++ PY KA + K YE++ K Y+ + A
Sbjct: 31 REKMKTDNP-DATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERYERERKEYDTKLAN 89
Query: 65 GTK 67
G K
Sbjct: 90 GEK 92
>gi|297688746|ref|XP_002821837.1| PREDICTED: FACT complex subunit SSRP1 isoform 2 [Pongo abelii]
Length = 709
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|322699087|gb|EFY90852.1| nucleosome binding protein [Metarhizium acridum CQMa 102]
gi|322708956|gb|EFZ00533.1| nucleosome binding protein [Metarhizium anisopliae ARSEF 23]
Length = 92
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
RE + ++P N + VGK GE+WK++++ +APY AKA K YE
Sbjct: 33 RENVRAENP-NITFGQVGKVLGERWKALNDKQRAPYEAKAAADKKRYE 79
>gi|123445154|ref|XP_001311340.1| HMG box family protein [Trichomonas vaginalis G3]
gi|121893145|gb|EAX98410.1| HMG box family protein [Trichomonas vaginalis G3]
Length = 96
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54
R Q K ++P S + K GE WK+MSE +K PY+ KAE K E++ D
Sbjct: 14 RPQVKAENP-GISFGDIAKKLGEMWKNMSEEEKKPYIEKAEAEKAEHKDD 62
>gi|334348387|ref|XP_003342057.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Monodelphis domestica]
Length = 208
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYNNKAAKLKEKYEKDV 157
>gi|4507241|ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]
gi|397512296|ref|XP_003826485.1| PREDICTED: FACT complex subunit SSRP1 [Pan paniscus]
gi|426368405|ref|XP_004051198.1| PREDICTED: FACT complex subunit SSRP1 [Gorilla gorilla gorilla]
gi|730840|sp|Q08945.1|SSRP1_HUMAN RecName: Full=FACT complex subunit SSRP1; AltName:
Full=Chromatin-specific transcription elongation factor
80 kDa subunit; AltName: Full=Facilitates chromatin
transcription complex 80 kDa subunit; Short=FACT 80 kDa
subunit; Short=FACTp80; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; Short=hSSRP1; AltName: Full=T160
gi|184242|gb|AAA58660.1| high mobility group box [Homo sapiens]
gi|13477285|gb|AAH05116.1| Structure specific recognition protein 1 [Homo sapiens]
gi|119594140|gb|EAW73734.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|119594141|gb|EAW73735.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|123993967|gb|ABM84585.1| structure specific recognition protein 1 [synthetic construct]
gi|123998313|gb|ABM86758.1| structure specific recognition protein 1 [synthetic construct]
gi|410226712|gb|JAA10575.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410226714|gb|JAA10576.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262712|gb|JAA19322.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262714|gb|JAA19323.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305268|gb|JAA31234.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305270|gb|JAA31235.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351021|gb|JAA42114.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351025|gb|JAA42116.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 709
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|406862701|gb|EKD15750.1| nucleosome binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 102
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P + VGK GE+WK++++ + PY AKA + K YE + +YN
Sbjct: 40 RENVREENP-GITFGQVGKVLGERWKALNDKQRTPYEAKAAQDKKRYEDEKASYN 93
>gi|221059780|ref|XP_002260535.1| High mobility group protein [Plasmodium knowlesi strain H]
gi|193810609|emb|CAQ42507.1| High mobility group protein, putative [Plasmodium knowlesi strain
H]
Length = 104
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54
+K VA VGK GE W + E +KAPY KA++ KV YE++
Sbjct: 54 SKDVATVGKMIGEAWNKLDEREKAPYEKKAQEDKVRYERE 93
>gi|297706944|ref|XP_002830283.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pongo abelii]
Length = 125
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-N 59
EF + K +P S+ V K GE W ++++++K PYV K K K +YEKD+ +Y +
Sbjct: 40 CSEFCPKIKSTNP-GISIGDVVKKLGEMWNNLNDSEKQPYVTKVAKLK-KYEKDVADYKS 97
Query: 60 RRQAEGTK 67
+ + +GTK
Sbjct: 98 KGKLDGTK 105
>gi|145356938|ref|XP_001422680.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582923|gb|ABP00997.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 622
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEE 71
V V KA GEKWK++++ +K+ Y +A++ K+ YE++M+ Y +A G++P+ E
Sbjct: 550 VTDVAKALGEKWKTITDEEKSVYQQQADEDKIRYEREMEAY---RAGGSQPKVE 600
>gi|410057780|ref|XP_003954279.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Pan
troglodytes]
Length = 709
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|410351023|gb|JAA42115.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 712
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y
Sbjct: 565 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEY 617
>gi|148238271|ref|NP_001081794.1| high mobility group protein-1 [Xenopus laevis]
gi|709959|gb|AAC59859.1| high mobility group protein-1 [Xenopus laevis]
Length = 210
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR + K +HP ++ + K GE W + + DK PY +A K K +YEKD+ Y
Sbjct: 105 CSDFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPYERRAAKLKEKYEKDVAAY 161
>gi|366998295|ref|XP_003683884.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS
4417]
gi|357522179|emb|CCE61450.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS
4417]
Length = 93
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
E R+ K ++P + S VG+ GEKWK+++ +K P+ AKAE K YE + YN +
Sbjct: 34 ETRDIVKAENP-DVSFGQVGRILGEKWKALTAEEKIPFEAKAEADKKRYESEKALYNATK 92
Query: 63 A 63
A
Sbjct: 93 A 93
>gi|49115548|gb|AAH73449.1| HMG-1 protein [Xenopus laevis]
Length = 210
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR + K +HP ++ + K GE W + + DK PY +A K K +YEKD+ Y
Sbjct: 105 CSDFRPKIKGEHP-GSTIGDIAKKLGEMWNNTATDDKLPYERRAAKLKEKYEKDVAAY 161
>gi|367006853|ref|XP_003688157.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS
4417]
gi|357526464|emb|CCE65723.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS
4417]
Length = 93
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S +G+ GEKW+++++ DK P+ AKA+ K YE + + YN +A
Sbjct: 47 SFGQIGRLLGEKWRALTDEDKGPFEAKAQADKKRYESEKELYNATKA 93
>gi|347966953|ref|XP_321065.4| AGAP001994-PA [Anopheles gambiae str. PEST]
gi|333469825|gb|EAA01245.4| AGAP001994-PA [Anopheles gambiae str. PEST]
Length = 763
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
VGK G++W+ + E++K Y+A+ E K E+EK+MK Y+ A
Sbjct: 100 VGKIIGQQWRLLPESEKEEYIAEYELEKAEHEKNMKAYHNSPA 142
>gi|339715208|ref|NP_001092721.2| high-mobility group box 1b [Danio rerio]
Length = 197
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|326930889|ref|XP_003211570.1| PREDICTED: transcription factor SOX-9-like [Meleagris gallopavo]
Length = 316
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQSEQEEG 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|332252411|ref|XP_003275348.1| PREDICTED: FACT complex subunit SSRP1 [Nomascus leucogenys]
Length = 709
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|289741165|gb|ADD19330.1| high mobility group protein D [Glossina morsitans morsitans]
gi|289741169|gb|ADD19332.1| nucleosome-binding factor SPN POB3 subunit [Glossina morsitans
morsitans]
Length = 111
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KKD+P +K V + K GGE W+++ DK + KA K K EY K +K Y
Sbjct: 17 LNENREQIKKDNPGSK-VTDIAKRGGELWRAIK--DKTEWEQKAVKMKEEYNKAVKEY 71
>gi|444724258|gb|ELW64868.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY K K K +YEKD+ Y
Sbjct: 44 CSEYRPKIKGEHP-GLSIGGVAKKLGEVWNNTAADDKQPYEKKPAKLKEKYEKDIAAY 100
>gi|255725950|ref|XP_002547901.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133825|gb|EER33380.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 358
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPE 69
+ ++ E W+++SE D+ PY E+ ++ Y+++M Y++R+ EG +PE
Sbjct: 178 ISRSMTEAWRNLSEEDRRPYFKLYEEDRIRYQREMTEYHQRK-EGGEPE 225
>gi|226372550|gb|ACO51900.1| High mobility group protein B2 [Rana catesbeiana]
Length = 212
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + S A K E+WK+MS K + A+ KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDSSVSFAEFSKKCSERWKTMSAKGKGKFEDLAKGDKVRYEREMKTY 78
>gi|429855225|gb|ELA30193.1| hmg box [Colletotrichum gloeosporioides Nara gc5]
Length = 313
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
++ KA GE+W +++EA+KAPY+A A+ YE+D+ N R+ E
Sbjct: 261 AIGPATKAIGEEWNNLTEAEKAPYLALAKSDMERYERDVSNVLGREVE 308
>gi|395847762|ref|XP_003796535.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 255
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K +P S+ V K E W ++S ++K PY+ KA + + +YEKD+ +Y
Sbjct: 127 CSEFHPKIKSTNP-GISIGDVAKKLSEMWSNLSGSEKQPYITKAAQLREKYEKDVADY 183
>gi|356506416|ref|XP_003521979.1| PREDICTED: FACT complex subunit SSRP1-like [Glycine max]
Length = 614
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
RE KK +P S VG+ GEKWK +S +K PY AKA + K Y ++ Y Q
Sbjct: 545 RENLKKTNP-GISFTDVGRVLGEKWKKLSAEEKEPYEAKAREDKKRYMDEISGYKNPQ 601
>gi|146412508|ref|XP_001482225.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
gi|146392989|gb|EDK41147.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
Length = 90
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
VGK GEKWK+M+ +K PY KAE K YEK+ Y +R +
Sbjct: 47 VGKLLGEKWKAMNADEKVPYETKAEADKKRYEKEKAEYAKRNS 89
>gi|115396468|ref|XP_001213873.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
gi|114193442|gb|EAU35142.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
Length = 101
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
R++ ++++P + VGK GEKWK++SE D+ PY KA K YE + +YN
Sbjct: 38 RDKVREENP-GITFGQVGKMLGEKWKALSEDDRRPYEEKAAADKKRYEDEKASYN 91
>gi|395857899|ref|XP_003801318.1| PREDICTED: high mobility group protein B4 [Otolemur garnettii]
Length = 187
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 7 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66
Q K+++P N SV V KA G+ W + A+K PY +A + +Y+++++ Y RRQ
Sbjct: 110 QLKRENP-NWSVVQVAKASGKMWSLSTNAEKQPYEERAALLRAKYQEELQIY-RRQCNAR 167
Query: 67 K 67
K
Sbjct: 168 K 168
>gi|393219482|gb|EJD04969.1| HMG-box [Fomitiporia mediterranea MF3/22]
Length = 114
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
+++RE+ K ++P + VGK G KWK M E++K PY+ +A + K E++ NY ++
Sbjct: 45 QDWRERVKAENP-DAGFGEVGKLLGAKWKEMDESEKRPYIEQAARDKARAEEEKANYEKK 103
Query: 62 QA 63
A
Sbjct: 104 SA 105
>gi|45360483|ref|NP_988904.1| high mobility group box 2 [Xenopus (Silurana) tropicalis]
gi|38181929|gb|AAH61601.1| high-mobility group box 2 [Xenopus (Silurana) tropicalis]
Length = 212
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEEMAKNDKVRYEREMKTY 78
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R Q K + P S+ K GE W + DK PY KA K K +YEKD+ Y
Sbjct: 107 CSEHRPQIKSESP-GLSIGDTAKKLGEMWSEQTPKDKLPYEQKAAKLKEKYEKDVAAY 163
>gi|109510329|ref|XP_001076590.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|293351208|ref|XP_002727725.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 9 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65
K+ HP N +V V KA G W SEADK PY +A + +Y ++ + Y+++ G
Sbjct: 112 KEQHP-NWTVGQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYHQQCQRG 167
>gi|60552474|gb|AAH91486.1| SSRP1 protein, partial [Homo sapiens]
Length = 633
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>gi|241954210|ref|XP_002419826.1| high-mobility group non-histone chromosomal protein, putative
[Candida dubliniensis CD36]
gi|223643167|emb|CAX42041.1| high-mobility group non-histone chromosomal protein, putative
[Candida dubliniensis CD36]
Length = 92
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VGK GEKWK+++ DK PY KAE K YEK+ Y ++ +
Sbjct: 45 SFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91
>gi|205539816|sp|P0C6E5.1|HG3BL_HUMAN RecName: Full=Putative high mobility group protein B3-like protein
Length = 187
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K +P + V K GE WK++++++K PY+ +A K K +YEKD+ Y
Sbjct: 103 CSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVY 159
>gi|167536391|ref|XP_001749867.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771582|gb|EDQ85246.1| predicted protein [Monosiga brevicollis MX1]
Length = 197
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 14 KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+N +VA + K G +WK +S+A K PY +A++ K +Y+K+++ Y
Sbjct: 149 RNATVADIAKIIGAEWKDLSDAVKKPYQDRADRLKSQYQKEVELY 193
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ R Q+ KD+P +K + V K G W+ MS+A K PY A + K Y+ M Y
Sbjct: 50 QKVRPQFSKDNP-DKKMTDVSKLIGAAWREMSDAAKKPYEEMARRDKQRYQHQMATY 105
>gi|71416266|ref|XP_810170.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70874664|gb|EAN88319.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
F ++K HP + SV KA G WK +S+ K PY A A+K K Y+++M
Sbjct: 215 FVSDFRKKHP-DLSVTETSKAAGAAWKELSDEMKKPYEAMAQKDKERYQREM 265
>gi|74638955|sp|Q9UVL1.1|NHP6_CANAL RecName: Full=Non-histone chromosomal protein 6
gi|6273391|gb|AAF06350.1|AF196333_1 nonhistone protein 6 [Candida albicans]
gi|238881668|gb|EEQ45306.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 92
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VGK GEKWK+++ DK PY KAE K YEK+ Y ++ +
Sbjct: 45 SFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91
>gi|392878832|gb|AFM88248.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEGLAKNDKVRYDREMRNY 78
>gi|449269918|gb|EMC80655.1| Transcription factor Sox-9, partial [Columba livia]
Length = 225
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQSEQEEG 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|444712158|gb|ELW53089.1| Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Tupaia
chinensis]
Length = 371
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 13 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 57
P S+ V K GE W ++S+++K PY+ K K K + EKD+ N
Sbjct: 299 PSLASLGDVAKKLGEMWNNLSDSEKQPYITKVTKLKEKSEKDVAN 343
>gi|440804471|gb|ELR25348.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 205
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+E R Q K DHP VGK GE W ++ + DK Y A K K+ Y+K+ Y
Sbjct: 24 QEKRTQIKTDHP-TVGFGQVGKLLGEAWAALPDGDKRKYNELAAKDKIRYQKEAAQY 79
>gi|441639466|ref|XP_004090212.1| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 131
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K +P S+ V K GE W ++++++K PYV K K K +YEKD+ +Y
Sbjct: 42 CSEFCPEIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLK-KYEKDVADY 97
>gi|289741167|gb|ADD19331.1| high mobility group protein D [Glossina morsitans morsitans]
Length = 111
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KKD+P +K V + K GGE W+++ DK + KA K K EY K +K Y
Sbjct: 17 LNENREQIKKDNPGSK-VTDIAKRGGELWRAIK--DKTEWEQKAVKMKEEYNKAVKEY 71
>gi|452839855|gb|EME41794.1| hypothetical protein DOTSEDRAFT_74007 [Dothistroma septosporum
NZE10]
Length = 108
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
R++ + D+P K VGK GEKWK +SE KAPY AKA K YE++ Y
Sbjct: 45 RDKVRDDNPGIK-FGEVGKQLGEKWKGLSEKQKAPYEAKAAADKKRYEEEKAAYT 98
>gi|351707228|gb|EHB10147.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 709
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK M + K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMPKEKKEEWDHKAEDARREYEKAMKEY 614
>gi|421991544|gb|AFX73410.1| transcription factor Sox9, partial [Salvelinus alpinus]
Length = 256
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+QY HP N A + K G+ W+ ++E +K P+V +AE+ +V+++KD +Y
Sbjct: 110 LADQYP--HPHN---AELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDY 159
>gi|407404609|gb|EKF29994.1| high mobility group protein, putative [Trypanosoma cruzi
marinkellei]
Length = 361
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
F ++K HP + SV KA G WK +S+ K PY A A+K K Y+++M
Sbjct: 306 FASDFRKKHP-DLSVTETSKAAGAAWKELSDEMKKPYEAMAQKDKERYQREM 356
>gi|412992276|emb|CCO19989.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 94
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 53
M + R + K +P K V VGK GE W++MS+++K PY KA+ KV YEK
Sbjct: 35 MNDQRAKVVKANPDMK-VTEVGKKLGELWRAMSDSEKVPYNKKADADKVRYEK 86
>gi|50304233|ref|XP_452066.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636989|sp|Q6CVH3.1|NHP6_KLULA RecName: Full=Non-histone chromosomal protein 6
gi|49641198|emb|CAH02459.1| KLLA0B12056p [Kluyveromyces lactis]
Length = 93
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAE--KRKVEYEKDMKNYNRRQAE 64
+ VG+ GEKWK+++E +KAPY AKAE K++ E EK++ + Q+E
Sbjct: 44 TFGQVGRILGEKWKALNEDEKAPYEAKAEADKKRYESEKELYIATKAQSE 93
>gi|67484144|ref|XP_657292.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474548|gb|EAL51913.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 114
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E R K++HP + + K E+WK++ E +K Y KA+ K +Y+KDM+ YN
Sbjct: 40 LNEHRASIKEEHP-DIRFTEISKVASEQWKALGEEEKKEYQTKADAAKEQYKKDMEKYNN 98
Query: 61 RQ 62
++
Sbjct: 99 KK 100
>gi|291415373|ref|XP_002723927.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 44 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSEKARYDREMKNY 102
>gi|157127700|ref|XP_001661139.1| hypothetical protein AaeL_AAEL010903 [Aedes aegypti]
gi|108872838|gb|EAT37063.1| AAEL010903-PA [Aedes aegypti]
Length = 689
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
VGK G++W+ + E++K ++ + E K+EYEK++K Y+ A
Sbjct: 102 VGKIIGQQWRDLPESEKEEFITEYEAEKLEYEKNLKAYHSSPA 144
>gi|402221853|gb|EJU01921.1| HMG-box [Dacryopinax sp. DJM-731 SS1]
Length = 128
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ + + WK++SE DK PY AK++K K +E++MK Y
Sbjct: 80 IMRILADMWKNLSEQDKEPYKAKSQKDKTRFEREMKAY 117
>gi|402875874|ref|XP_003901718.1| PREDICTED: high mobility group protein B2-like, partial [Papio
anubis]
Length = 248
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++K+ HP + A K E+WK+MS +K+ + A+ KV Y+++MKNY
Sbjct: 55 VQTCREEHKEKHPDSSVGFAEFSKKCSERWKTMSAKEKSKFEGMAKSGKVRYDREMKNY 113
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 141 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSQQSAKDKQPYEQKAAKLKEKYEKDIAAY 197
>gi|254771200|gb|ACT82009.1| Sox9 [Lepidochelys olivacea]
Length = 486
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|384247648|gb|EIE21134.1| SSrecog-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 659
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 53
R++ KK++P + S VGKA G+KWK++S +KA Y A+K KV Y K
Sbjct: 579 RDEVKKENP-DISFGEVGKALGDKWKNISATEKAKYDEMAKKDKVRYAK 626
>gi|449544041|gb|EMD35015.1| hypothetical protein CERSUDRAFT_85760 [Ceriporiopsis subvermispora
B]
Length = 118
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
+++RE+ K ++P + +GK G KWK + E++K PY+ +A + K E++ +Y+ R
Sbjct: 44 QDWRERIKAENP-DAGFGEIGKLLGAKWKELDESEKKPYIEQAARDKARAEQEKTDYDGR 102
Query: 62 QA 63
+A
Sbjct: 103 KA 104
>gi|124805429|ref|XP_001350438.1| high mobility group protein [Plasmodium falciparum 3D7]
gi|6525222|gb|AAF15357.1|AF201952_1 high mobility group protein [Plasmodium falciparum]
gi|23496560|gb|AAN36118.1|AE014844_29 high mobility group protein [Plasmodium falciparum 3D7]
Length = 97
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+K VA VGK GE W + E +KAP+ KA++ K+ YEK+ Y
Sbjct: 47 SKDVATVGKMIGEAWNKLGEKEKAPFEKKAQEDKLRYEKEKAEY 90
>gi|291415754|ref|XP_002724114.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 132 EHRPEIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 186
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 44 VQMCREEHKKKHPDSSINFAEFSKKCSERWKTMSAKEKSKFENMAKSDKARYDREMKNY 102
>gi|2506521|sp|P48434.2|SOX9_CHICK RecName: Full=Transcription factor SOX-9
gi|1589736|gb|AAB09663.1| Sox9 transcription factor [Gallus gallus]
Length = 494
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 134 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKTVKNGQSEQEEG 193
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 194 SEQTHISPN 202
>gi|5815432|gb|AAD52670.1|AF178849_1 high mobility group protein HMG1 [Gallus gallus]
Length = 214
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ K+ YEK+MKNY
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNY 78
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|380083124|gb|AFD33645.1| high mobility group box 1, partial [Gallus gallus]
Length = 185
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ K+ YEK+MKNY
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNY 78
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|4336832|gb|AAD17974.1| SOX9 [Alligator mississippiensis]
Length = 495
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQSEQEEG 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|45382473|ref|NP_990233.1| high mobility group protein B1 [Gallus gallus]
gi|326914268|ref|XP_003203448.1| PREDICTED: high mobility group protein B1-like [Meleagris
gallopavo]
gi|4140289|emb|CAA76978.1| high mobility group 1 protein [Gallus gallus]
gi|60098903|emb|CAH65282.1| hypothetical protein RCJMB04_15a21 [Gallus gallus]
Length = 215
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ K+ YEK+MKNY
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNY 78
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|444517137|gb|ELV11379.1| High mobility group protein B1 [Tupaia chinensis]
Length = 204
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 57
++ F+E++KK HP + S + K EKWK+MS +K + +A+ K YE+DMK
Sbjct: 20 VQTFQEEHKKQHPDASVSFSEFPKKCSEKWKAMSAKEKGKFEDRAKADKASYERDMKT 77
>gi|405963576|gb|EKC29138.1| FACT complex subunit SSRP1 [Crassostrea gigas]
Length = 757
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ KKD P + S+ + K GE WK M + DK + KA + K EYEK M+ Y ++ E
Sbjct: 575 REELKKDTP-DISITDLSKKAGEVWKQMEDTDKTEWNEKAAEAKKEYEKAMEEYKAKKKE 633
Query: 65 G 65
Sbjct: 634 A 634
>gi|344300446|gb|EGW30767.1| Non-histone chromosomal protein 6 [Spathaspora passalidarum NRRL
Y-27907]
Length = 93
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
S VGK GEKWK+++ +K PY KAE K YEK+ Y +R
Sbjct: 46 SFGQVGKLLGEKWKALTADEKVPYENKAETDKKRYEKEKAEYAKR 90
>gi|790198|gb|AAC41606.1| high mobility group protein [Plasmodium falciparum]
Length = 97
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+K VA VGK GE W + E +KAP+ KA++ K+ YEK+ Y
Sbjct: 47 SKDVATVGKMIGEAWNKLGEKEKAPFEKKAQEDKLRYEKEKAEY 90
>gi|365762037|gb|EHN03653.1| Nhp6bp [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841847|gb|EJT44170.1| NHP6B-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 102
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VG+ GEKWK+++ DK PY +KA+ K YE + + YN +A
Sbjct: 56 TFGQVGRILGEKWKALTAEDKQPYESKAQADKKRYESEKELYNATRA 102
>gi|224043266|ref|XP_002194652.1| PREDICTED: high mobility group protein B1 [Taeniopygia guttata]
Length = 215
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ K+ YEK+MKNY
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNY 78
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|156101624|ref|XP_001616505.1| high mobility group protein [Plasmodium vivax Sal-1]
gi|148805379|gb|EDL46778.1| high mobility group protein, putative [Plasmodium vivax]
Length = 107
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54
+K VA VGK GE W + E +KAPY KA++ K+ YE++
Sbjct: 57 SKDVATVGKMIGEAWNKLDEREKAPYEKKAQEDKLRYERE 96
>gi|392337480|ref|XP_003753270.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343959|ref|XP_003748829.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY A K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWTNTAADDKQPYGKMAAKLKEKYEKDIAAY 162
>gi|357608070|gb|EHJ65807.1| mobility group protein 1B [Danaus plexippus]
Length = 180
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
REQ K ++P K V + K GGE W+SM DK + KA K K +Y KD+++YN
Sbjct: 80 REQIKSENPGLK-VTEIAKKGGEIWRSMK--DKTVWEEKAAKAKEQYTKDLESYN 131
>gi|348543650|ref|XP_003459296.1| PREDICTED: high mobility group protein B2-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R K+ +P S+ K GE W +S+++K PY KA+K + +Y++DM Y
Sbjct: 108 CSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKLSQSEKQPYEEKAQKLREKYDRDMVAY 164
>gi|300677966|gb|ADK27290.1| high-mobility-group B1a [Gekko japonicus]
Length = 215
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++MKNY
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEEMAKGDKVRYEREMKNYI 79
Query: 60 RRQAEGTK 67
+ E K
Sbjct: 80 PPKGESKK 87
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +HP S+ V K GE W + + DK P+ KA K K +YEKD+ Y
Sbjct: 106 CSEFRPKIKGEHP-GLSIGDVAKKLGEMWNNTAGDDKQPFEKKAAKLKEKYEKDIAAY 162
>gi|432953329|ref|XP_004085352.1| PREDICTED: high mobility group protein B2-like isoform 1 [Oryzias
latipes]
Length = 200
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R K+ +P S+ K GE W +S+++K PY KA+K + +Y++DM Y
Sbjct: 108 CSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKLSQSEKQPYEEKAQKLREKYDRDMVAY 164
>gi|62860563|gb|AAY16523.1| SRY sex determining region Y-box 9 [Coturnix japonica]
Length = 495
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQSEQEEG 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|291399740|ref|XP_002716281.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 243
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD Y
Sbjct: 108 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYERKAAKLKGKYEKDTAAY 162
>gi|451847653|gb|EMD60960.1| hypothetical protein COCSADRAFT_98214 [Cochliobolus sativus
ND90Pr]
Length = 106
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ ++D+P K VGK GEKWK+++E + PY AKA K YE++ Y
Sbjct: 43 REKVREDNPGIK-FGEVGKLLGEKWKALNEKQRQPYEAKAALDKKRYEQEKAAYT 96
>gi|196128947|gb|ACG70782.1| HMG-box containing protein 9 [Trachemys scripta]
Length = 492
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQSEQEEG 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|351706098|gb|EHB09017.1| E3 ubiquitin-protein ligase RFWD2 [Heterocephalus glaber]
Length = 734
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + + K E+WK+MS +K + AE K YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDTSVNFSELPKKCSERWKTMSAKEKGTFEDMAEVDKARYEREMKTY 78
>gi|348525340|ref|XP_003450180.1| PREDICTED: high mobility group-T protein-like isoform 2
[Oreochromis niloticus]
Length = 184
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A++ K+ YE++MKNY
Sbjct: 19 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFEDMAKQDKLRYEREMKNY 77
>gi|332245567|ref|XP_003271930.1| PREDICTED: high mobility group protein B3 [Nomascus leucogenys]
Length = 177
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 22 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
GK GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 101 GKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 137
>gi|238486744|ref|XP_002374610.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
gi|317144043|ref|XP_003189559.1| non-histone chromosomal protein 6 [Aspergillus oryzae RIB40]
gi|220699489|gb|EED55828.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
Length = 104
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
RE+ ++++P S VGK GEKWK++SEAD+ PY KA K Y
Sbjct: 40 REKVREENP-GISFGQVGKMLGEKWKALSEADRRPYEDKAAADKKRY 85
>gi|56788496|gb|AAW29969.1| unknown [Sus scrofa]
gi|56792880|gb|AAW30632.1| unknown [Sus scrofa]
Length = 193
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY A K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKXAAKLKEKYEKDIAAY 162
>gi|255506305|gb|ACU12296.1| Sox9 [Crocodylus palustris]
Length = 494
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQSEQEEG 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|353351504|emb|CBX36444.1| high-mobility-group-1 protein [Plecoglossus altivelis]
Length = 204
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++MKNY
Sbjct: 19 VQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMKNY 77
>gi|45383572|ref|NP_989612.1| transcription factor SOX-9 [Gallus gallus]
gi|2982740|dbj|BAA25296.1| SOX9 [Gallus gallus]
Length = 494
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQSEQEEG 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|229367846|gb|ACQ58903.1| High mobility group protein B2 [Anoplopoma fimbria]
Length = 213
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R + K+++P S+ + K GE W + + DK PY A+A K K +YEKD+ Y +
Sbjct: 111 RPRIKEENP-GISIGDIAKKLGEFWSTQTSKDKVPYEARAGKLKEKYEKDVAAYKAKSGL 169
Query: 65 G 65
G
Sbjct: 170 G 170
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + A K E+WK+MS +K + A+ KV YE++MK Y
Sbjct: 23 REEHKKKHPGVSVGFAEFSKKCSERWKTMSAKEKVKFEDLAKNDKVRYEREMKTY 77
>gi|62860559|gb|AAY16521.1| SRY sex determining region Y-box 9 [Anas platyrhynchos]
Length = 489
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQSEQEEG 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|346324407|gb|EGX94004.1| nucleosome binding protein [Cordyceps militaris CM01]
Length = 96
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S VGK GE+WK++SE + PY AKA K YE + YN
Sbjct: 52 SFGQVGKILGERWKALSEKQRVPYEAKAAADKKRYEDEKAAYN 94
>gi|195436362|ref|XP_002066137.1| GK22092 [Drosophila willistoni]
gi|194162222|gb|EDW77123.1| GK22092 [Drosophila willistoni]
Length = 730
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ K+D P K V + K GGE WK + DK+ + A K K Y+ +MKNY
Sbjct: 566 LNETREQIKRDSPGIK-VTEIAKKGGEMWKELK--DKSKWENLAAKDKQRYQDEMKNY 620
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 48
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K
Sbjct: 92 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDSEKQPYITKAAKLK 138
>gi|121705796|ref|XP_001271161.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
clavatus NRRL 1]
gi|119399307|gb|EAW09735.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
clavatus NRRL 1]
Length = 104
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
S VGK GE+WK++S++++ PY KA K YE + +YN Q E
Sbjct: 51 SFGQVGKMLGERWKALSDSERRPYEEKAATDKKRYEDEKASYNAAQEE 98
>gi|225706046|gb|ACO08869.1| High mobility group-T protein [Osmerus mordax]
Length = 204
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++MKNY
Sbjct: 19 VQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMKNY 77
>gi|32335|emb|CAA78938.1| HMG2B [Homo sapiens]
Length = 186
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 83 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 139
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 1 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 55
>gi|441618163|ref|XP_003271355.2| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 206
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K P S+ V K GE W ++++++K PY+ KA K K YEKD+ +Y
Sbjct: 112 EFCLKIKSTKP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLK--YEKDVADY 164
>gi|444323521|ref|XP_004182401.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
gi|387515448|emb|CCH62882.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
Length = 94
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
VGK GE+WK++S +K PY KAE K YE + + YN +A
Sbjct: 51 VGKILGERWKALSAEEKVPYETKAEADKKRYESEKELYNATRA 93
>gi|260794186|ref|XP_002592090.1| hypothetical protein BRAFLDRAFT_84959 [Branchiostoma floridae]
gi|229277305|gb|EEN48101.1| hypothetical protein BRAFLDRAFT_84959 [Branchiostoma floridae]
Length = 565
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
EQ K HP K + +GK G+ W+ ++E K Y+ E K+EY ++MK Y+
Sbjct: 68 EQVKAQHPDLK-LWEIGKIIGQMWRDLTEEKKQEYLDDYEAEKIEYNENMKAYH 120
>gi|449500530|ref|XP_002187513.2| PREDICTED: high mobility group protein B2 [Taeniopygia guttata]
Length = 145
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 57 EHRPKIKNEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 111
>gi|425767422|gb|EKV05996.1| Non-histone chromosomal protein 6 [Penicillium digitatum PHI26]
gi|425779648|gb|EKV17689.1| Non-histone chromosomal protein 6 [Penicillium digitatum Pd1]
Length = 189
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
S VGK G+KWK++SE D+ PY AKA K YE
Sbjct: 135 SFGQVGKQLGDKWKALSETDRKPYDAKAAADKKRYE 170
>gi|354484377|ref|XP_003504365.1| PREDICTED: high mobility group protein B2-like [Cricetulus griseus]
Length = 264
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 160 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 216
>gi|12838247|dbj|BAB24141.1| unnamed protein product [Mus musculus]
Length = 181
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
M FR ++K+ P + EKW+S+S+ +KA Y A AE K Y+++M NY
Sbjct: 20 MLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAEHDKARYQQEMMNY 78
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 76
+V V KA G+ W + EA+K PY KA + +Y ++ + Y R Q +G K E ++
Sbjct: 119 TVVQVAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFEEQEAY-RNQCQGRKGNFLESAKT 177
Query: 77 SMSE 80
S+ +
Sbjct: 178 SLKQ 181
>gi|348525338|ref|XP_003450179.1| PREDICTED: high mobility group-T protein-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A++ K+ YE++MKNY
Sbjct: 19 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFEDMAKQDKLRYEREMKNY 77
>gi|344235655|gb|EGV91758.1| High mobility group protein B2 [Cricetulus griseus]
Length = 159
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 55 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 111
>gi|303304752|emb|CBD77423.1| high mobility group box 2 protein [Plecoglossus altivelis]
Length = 215
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 67
S+ + K GE W + DK PY AKA K K +YEKD+ Y + G K
Sbjct: 122 SIGDIAKKLGELWSKQTPKDKQPYEAKAGKLKEKYEKDVAAYRAKSGAGGK 172
>gi|307105669|gb|EFN53917.1| hypothetical protein CHLNCDRAFT_136125 [Chlorella variabilis]
Length = 101
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
R + KK P + S+ VGKA G WK +S+ +K PY KA+K K YEK+ Y ++
Sbjct: 46 RVEMKKSDP-SLSLGEVGKATGAAWKELSDKEKEPYQKKADKDKARYEKEKAAYEKK 101
>gi|291413747|ref|XP_002723128.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 132 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 186
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K + A+ K Y+++MKNY
Sbjct: 44 VQMCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKPKFEDMAKSDKARYDREMKNY 102
>gi|221221710|gb|ACM09516.1| High mobility group protein B1 [Salmo salar]
Length = 179
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ R ++KK HP + + A K E+WK MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|403295709|ref|XP_003938773.1| PREDICTED: high mobility group protein B2 [Saimiri boliviensis
boliviensis]
Length = 158
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 57 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 111
>gi|147903143|ref|NP_001079387.1| high mobility group box 2 [Xenopus laevis]
gi|80479234|gb|AAI08500.1| MGC52825 protein [Xenopus laevis]
Length = 211
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K + A+ KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMAKGDKVRYEREMKTY 78
>gi|380476672|emb|CCF44585.1| non-histone chromosomal protein 6 [Colletotrichum higginsianum]
Length = 96
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK+++E + PY AKA K YE + + YN
Sbjct: 41 RENVREENP-GISFGQVGKILGERWKALNEKQRQPYEAKAATDKKRYEDEKQAYN 94
>gi|194666188|ref|XP_875720.3| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|297473608|ref|XP_002686711.1| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|296488702|tpg|DAA30815.1| TPA: high-mobility group box 2-like [Bos taurus]
Length = 283
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 182 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 236
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 94 INTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 152
>gi|27370889|gb|AAH41262.1| MGC52825 protein [Xenopus laevis]
Length = 212
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K + A+ KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMAKGDKVRYEREMKTY 78
>gi|392351997|ref|XP_003751090.1| PREDICTED: high mobility group protein B2-like, partial [Rattus
norvegicus]
Length = 154
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
>gi|301763549|ref|XP_002917185.1| PREDICTED: high mobility group protein B4-like [Ailuropoda
melanoleuca]
Length = 193
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 7 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
Q K+++P N SV V KA G+ W + ++A+K PY +A + +Y+++++ Y +++
Sbjct: 112 QLKRENP-NWSVVQVAKASGKMWSATTDAEKQPYEQRAALLRAKYQEELEIYRKQR 166
>gi|118792222|ref|XP_001238271.1| AGAP012334-PA [Anopheles gambiae str. PEST]
gi|116116797|gb|EAU75768.1| AGAP012334-PA [Anopheles gambiae str. PEST]
Length = 111
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
REQ KK++P K V + K GGE W+ M DK+ + KA K K EY K M+++ R
Sbjct: 20 REQIKKENPGIK-VTEIAKKGGELWRGMK--DKSEWEYKAAKMKDEYNKQMQDFER 72
>gi|159476440|ref|XP_001696319.1| high mobility group protein [Chlamydomonas reinhardtii]
gi|158282544|gb|EDP08296.1| high mobility group protein [Chlamydomonas reinhardtii]
Length = 179
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE K ++P + VGK GEKWK +S DK Y KA K K Y+K+M++Y
Sbjct: 75 IRESVKSENP-GIAFGEVGKVIGEKWKGLSADDKKEYDEKAAKDKERYQKEMESYG 129
>gi|327279949|ref|XP_003224717.1| PREDICTED: transcription factor SOX-9-like [Anolis carolinensis]
Length = 526
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 159 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 218
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 219 SEQTHISPN 227
>gi|194755944|ref|XP_001960239.1| GF11622 [Drosophila ananassae]
gi|190621537|gb|EDV37061.1| GF11622 [Drosophila ananassae]
Length = 111
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KKD+P +K V + K GGE W+ + DK+ + KA K K +Y K +K Y
Sbjct: 17 LNENREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKSEWEQKAIKMKEDYNKAVKEY 71
>gi|8393536|ref|NP_058883.1| high mobility group protein B2 [Rattus norvegicus]
gi|293340790|ref|XP_001063065.2| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|293352163|ref|XP_573272.3| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|1708260|sp|P52925.2|HMGB2_RAT RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|1304193|dbj|BAA12350.1| HMG2 [Rattus norvegicus]
gi|51259308|gb|AAH78866.1| Hmgb2 protein [Rattus norvegicus]
gi|58476482|gb|AAH89854.1| Hmgb2 protein [Rattus norvegicus]
gi|77567606|gb|AAI07456.1| Hmgb2 protein [Rattus norvegicus]
gi|149032266|gb|EDL87172.1| rCG59188 [Rattus norvegicus]
Length = 210
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
>gi|440631791|gb|ELR01710.1| non-histone chromosomal protein 6 [Geomyces destructans 20631-21]
Length = 101
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
S VGK GE+WK++++ + PY KA++ K YE + +YN
Sbjct: 51 SFGQVGKVLGERWKALNDKQRTPYETKAQEDKKRYEDEKASYN 93
>gi|355766483|gb|EHH62519.1| hypothetical protein EGM_20887 [Macaca fascicularis]
Length = 198
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
+F + K +P S+ + K GE WK++++++K PY+ KA K K +YEKD+
Sbjct: 93 KFCPKMKSTNP-GISIGDMVKKLGEMWKNLNDSEKQPYITKAAKLKDKYEKDV 144
>gi|366988547|ref|XP_003674040.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
gi|342299903|emb|CCC67659.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
Length = 101
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R+ K ++P N + VGK GEKWK+++ +K PY AKA+ K YE + + Y Q
Sbjct: 35 RDIVKAENP-NITFGQVGKVLGEKWKALTAEEKEPYEAKAKADKKRYESEKELYMATQVH 93
Query: 65 GTKPEEE 71
EEE
Sbjct: 94 ADDEEEE 100
>gi|321478856|gb|EFX89813.1| hypothetical protein DAPPUDRAFT_232871 [Daphnia pulex]
Length = 190
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP +N + K E+WK+MS+ +K + AE+ KV ++ +M++Y
Sbjct: 22 VQTCREEHKKKHPDENVVFSEFSKKCAERWKTMSDKEKKRFQEMAERDKVRFDDEMRHY 80
>gi|195123163|ref|XP_002006078.1| GI18750 [Drosophila mojavensis]
gi|193911146|gb|EDW10013.1| GI18750 [Drosophila mojavensis]
Length = 734
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ K+D+P K V + K GGE WK + DK+ + A K K Y+ M+NY
Sbjct: 572 LSETREQIKRDNPGIK-VTEIAKKGGEMWKELK--DKSKWEELASKDKQRYQDAMRNY 626
>gi|149060359|gb|EDM11073.1| rCG63620 [Rattus norvegicus]
Length = 198
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 94 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 150
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 8 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 66
>gi|321476548|gb|EFX87508.1| hypothetical protein DAPPUDRAFT_306496 [Daphnia pulex]
Length = 191
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ R K+ HP+ ++ + K G +W +A KA Y AKAE+ + YE+DM Y +
Sbjct: 113 CHDLRGHVKEQHPEY-TLGEIAKELGRRWGVSDDATKAQYAAKAEQDRARYERDMNAYKK 171
Query: 61 RQAE 64
+ E
Sbjct: 172 SKLE 175
>gi|417397133|gb|JAA45600.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 208
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|390336841|ref|XP_790476.2| PREDICTED: high mobility group protein 20A-like [Strongylocentrotus
purpuratus]
Length = 372
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
++E RE+ ++D+P N S A + K +W MS DK ++ +A++ K Y K+++ Y +
Sbjct: 130 LKEGREKVREDNP-NMSFAEITKLLAGQWSKMSAVDKQRFLDEADRDKERYAKELQQYQQ 188
Query: 61 RQA 63
+A
Sbjct: 189 TEA 191
>gi|344252855|gb|EGW08959.1| TRAF family member-associated NF-kappa-B activator [Cricetulus
griseus]
Length = 427
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R ++K +HP S+ V K GE W + + DK PY KA K K ++EKD+ Y
Sbjct: 319 CSEYRPKFKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKHEKDIAAY 375
>gi|225703866|gb|ACO07779.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ R ++KK HP + + A K E+WK MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|221221922|gb|ACM09622.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ R ++KK HP + + A K E+WK MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|221219434|gb|ACM08378.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ R ++KK HP + + A K E+WK MS +K + A++ KV YE++MKNY
Sbjct: 19 VQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDMAKQDKVRYEREMKNY 77
>gi|47522942|ref|NP_999228.1| high mobility group protein B2 [Sus scrofa]
gi|123375|sp|P17741.2|HMGB2_PIG RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|164492|gb|AAA31051.1| non-histone protein HMG2 precursor [Sus scrofa]
Length = 210
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|391344136|ref|XP_003746359.1| PREDICTED: high mobility group protein DSP1-like isoform 3
[Metaseiulus occidentalis]
Length = 202
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP N A K E+WK+M+E +K + A K K YE +M Y
Sbjct: 33 VQTCREEHKKKHPNENVVFAEFSKKCAERWKTMNEPEKQRFHLMAAKDKKRYENEMSTY 91
>gi|291413749|ref|XP_002723129.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 219
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
>gi|431918327|gb|ELK17554.1| High mobility group protein B2 [Pteropus alecto]
Length = 209
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|426220609|ref|XP_004004507.1| PREDICTED: high mobility group protein B2 [Ovis aries]
Length = 205
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|73993609|ref|XP_543194.2| PREDICTED: high mobility group protein B2 isoform 1 [Canis lupus
familiaris]
gi|301753755|ref|XP_002912713.1| PREDICTED: high mobility group protein B2-like [Ailuropoda
melanoleuca]
gi|410956554|ref|XP_003984907.1| PREDICTED: high mobility group protein B2 [Felis catus]
gi|281338293|gb|EFB13877.1| hypothetical protein PANDA_000462 [Ailuropoda melanoleuca]
Length = 210
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|11321591|ref|NP_002120.1| high mobility group protein B2 [Homo sapiens]
gi|83035095|ref|NP_001032705.1| high mobility group protein B2 [Bos taurus]
gi|194688133|ref|NP_001124160.1| high mobility group protein B2 [Homo sapiens]
gi|194688135|ref|NP_001124161.1| high mobility group protein B2 [Homo sapiens]
gi|332820789|ref|XP_517538.3| PREDICTED: high mobility group protein B2 isoform 2 [Pan
troglodytes]
gi|332820791|ref|XP_003310651.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan
troglodytes]
gi|397505874|ref|XP_003823467.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan paniscus]
gi|397505876|ref|XP_003823468.1| PREDICTED: high mobility group protein B2 isoform 2 [Pan paniscus]
gi|397505878|ref|XP_003823469.1| PREDICTED: high mobility group protein B2 isoform 3 [Pan paniscus]
gi|410038949|ref|XP_003950520.1| PREDICTED: high mobility group protein B2 [Pan troglodytes]
gi|123374|sp|P26583.2|HMGB2_HUMAN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|109940084|sp|P40673.3|HMGB2_BOVIN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|32333|emb|CAA44395.1| HMG-2 [Homo sapiens]
gi|184236|gb|AAA58659.1| high mobility group 2 protein [Homo sapiens]
gi|12654471|gb|AAH01063.1| High-mobility group box 2 [Homo sapiens]
gi|54696426|gb|AAV38585.1| high-mobility group box 2 [Homo sapiens]
gi|61358840|gb|AAX41628.1| high-mobility group box 2 [synthetic construct]
gi|71679685|gb|AAI00020.1| HMGB2 protein [Homo sapiens]
gi|81674324|gb|AAI09756.1| High-mobility group box 2 [Bos taurus]
gi|119625163|gb|EAX04758.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|119625164|gb|EAX04759.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|123982946|gb|ABM83214.1| high-mobility group box 2 [synthetic construct]
gi|123997623|gb|ABM86413.1| high-mobility group box 2 [synthetic construct]
gi|189053183|dbj|BAG34805.1| unnamed protein product [Homo sapiens]
gi|208966462|dbj|BAG73245.1| high-mobility group box 2 [synthetic construct]
gi|296484972|tpg|DAA27087.1| TPA: high mobility group protein B2 [Bos taurus]
gi|380785663|gb|AFE64707.1| high mobility group protein B2 [Macaca mulatta]
gi|383417929|gb|AFH32178.1| high mobility group protein B2 [Macaca mulatta]
gi|383417931|gb|AFH32179.1| high mobility group protein B2 [Macaca mulatta]
gi|383417933|gb|AFH32180.1| high mobility group protein B2 [Macaca mulatta]
gi|384941858|gb|AFI34534.1| high mobility group protein B2 [Macaca mulatta]
gi|384946750|gb|AFI36980.1| high mobility group protein B2 [Macaca mulatta]
gi|410212048|gb|JAA03243.1| high-mobility group box 2 [Pan troglodytes]
gi|410212050|gb|JAA03244.1| high-mobility group box 2 [Pan troglodytes]
gi|410253758|gb|JAA14846.1| high-mobility group box 2 [Pan troglodytes]
gi|410253760|gb|JAA14847.1| high-mobility group box 2 [Pan troglodytes]
gi|410304294|gb|JAA30747.1| high-mobility group box 2 [Pan troglodytes]
gi|410304296|gb|JAA30748.1| high-mobility group box 2 [Pan troglodytes]
gi|410337391|gb|JAA37642.1| high-mobility group box 2 [Pan troglodytes]
gi|410337393|gb|JAA37643.1| high-mobility group box 2 [Pan troglodytes]
gi|410337395|gb|JAA37644.1| high mobility group box 2 [Pan troglodytes]
gi|440908504|gb|ELR58513.1| High mobility group protein B2 [Bos grunniens mutus]
gi|738688|prf||2001363A high mobility group protein 2
Length = 209
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|395840000|ref|XP_003792858.1| PREDICTED: high mobility group protein B2 [Otolemur garnettii]
Length = 209
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKNDKARYDREMKNY 78
>gi|383417927|gb|AFH32177.1| high mobility group protein B2 [Macaca mulatta]
Length = 206
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|351701092|gb|EHB04011.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 215
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 107 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 163
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|344245608|gb|EGW01712.1| High mobility group protein B1 [Cricetulus griseus]
Length = 162
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 12 HPKNK------SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
HPK K S+ K GE W S + DK PY KA K K +YEKD+ +Y
Sbjct: 59 HPKIKGERPGLSIGDAAKKLGETWNSTAAEDKQPYETKAAKLKEQYEKDIADY 111
>gi|296195168|ref|XP_002745261.1| PREDICTED: high mobility group protein B2-like isoform 2
[Callithrix jacchus]
Length = 205
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|291385922|ref|XP_002709517.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
gi|344288245|ref|XP_003415861.1| PREDICTED: high mobility group protein B2-like [Loxodonta africana]
Length = 210
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|297674678|ref|XP_002815340.1| PREDICTED: high mobility group protein B2 isoform 1 [Pongo abelii]
gi|297674680|ref|XP_002815341.1| PREDICTED: high mobility group protein B2 isoform 2 [Pongo abelii]
gi|395735499|ref|XP_003776594.1| PREDICTED: high mobility group protein B2 [Pongo abelii]
gi|402870856|ref|XP_003899415.1| PREDICTED: high mobility group protein B2 isoform 1 [Papio anubis]
gi|402870858|ref|XP_003899416.1| PREDICTED: high mobility group protein B2 isoform 2 [Papio anubis]
gi|402871219|ref|XP_003899573.1| PREDICTED: high mobility group protein B2-like [Papio anubis]
gi|90086209|dbj|BAE91657.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|332217748|ref|XP_003258025.1| PREDICTED: high mobility group protein B2 [Nomascus leucogenys]
gi|426346003|ref|XP_004040680.1| PREDICTED: high mobility group protein B2 isoform 1 [Gorilla
gorilla gorilla]
gi|426346005|ref|XP_004040681.1| PREDICTED: high mobility group protein B2 isoform 2 [Gorilla
gorilla gorilla]
gi|426346007|ref|XP_004040682.1| PREDICTED: high mobility group protein B2 isoform 3 [Gorilla
gorilla gorilla]
gi|54696428|gb|AAV38586.1| high-mobility group box 2 [Homo sapiens]
Length = 208
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|302828472|ref|XP_002945803.1| hypothetical protein VOLCADRAFT_72419 [Volvox carteri f.
nagariensis]
gi|300268618|gb|EFJ52798.1| hypothetical protein VOLCADRAFT_72419 [Volvox carteri f.
nagariensis]
Length = 199
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R++ K D+P S VGK GEKWKS+ +K+ Y KA+K K Y K+M+ Y
Sbjct: 96 RDKVKTDNP-GVSFGEVGKLLGEKWKSLGANEKSEYEEKAKKDKERYAKEMEAY 148
>gi|302851253|ref|XP_002957151.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
gi|300257558|gb|EFJ41805.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
Length = 94
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ RE+ K ++P SV +GK GE WK +SE DK Y+ +AE K Y K+ YN+
Sbjct: 37 DMRERVKAENP-GMSVTDIGKRLGELWKEVSEEDKKKYLKQAEDDKERYNKEAAAYNK 93
>gi|255552860|ref|XP_002517473.1| structure-specific recognition protein, putative [Ricinus communis]
gi|223543484|gb|EEF45015.1| structure-specific recognition protein, putative [Ricinus communis]
Length = 640
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE KK +P + VGK G+KWK +S +K PY AKA K Y++++ Y Q
Sbjct: 571 RENVKKSNP-GIAFGDVGKILGDKWKKLSAEEKEPYEAKARADKKRYKEEVSGYKNPQPM 629
Query: 65 GTKPEEEEESE 75
E +SE
Sbjct: 630 DIDSGNESDSE 640
>gi|148277100|ref|NP_081312.2| high mobility group protein B4 [Mus musculus]
gi|81892334|sp|Q6P8W9.1|HMGB4_MOUSE RecName: Full=High mobility group protein B4
gi|38174595|gb|AAH61030.1| High-mobility group box 4 [Mus musculus]
gi|148698295|gb|EDL30242.1| high-mobility group box 4 [Mus musculus]
Length = 181
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
M FR ++K+ P N + + EKW+S+S+ +KA Y A AE K Y+++M NY
Sbjct: 20 MLNFRNKFKEQQP-NTYLGFKEFSRKCSEKWRSISKHEKAKYEALAELDKARYQQEMMNY 78
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 76
+V V KA G+ W + EA+K PY KA + +Y ++ + Y R Q +G K E ++
Sbjct: 119 TVVQVAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFEEQEAY-RNQCQGRKGNFLESAKT 177
Query: 77 SMSE 80
S+ +
Sbjct: 178 SLKQ 181
>gi|302411796|ref|XP_003003731.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|261357636|gb|EEY20064.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|346978438|gb|EGY21890.1| nucleosome binding protein [Verticillium dahliae VdLs.17]
Length = 102
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK+++E + PY AKA K YE + YN
Sbjct: 40 RENVREENP-GISFGQVGKLLGERWKALNEKQRGPYEAKAVADKKRYEDEKAAYN 93
>gi|392343469|ref|XP_003754892.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|392351669|ref|XP_003750991.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|392356176|ref|XP_003752256.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 9 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
K+ HP N +V V KA G W SEADK PY +A + +Y
Sbjct: 112 KEQHP-NWTVGQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153
>gi|11640611|gb|AAG39300.1| HMG-like protein [Heterodera glycines]
Length = 47
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
SVA V KA G +W MS ADK + KA K YE++M Y RQ
Sbjct: 1 SVAEVAKAAGVEWGRMSAADKTLWEQKAADDKKRYEQEMTQYRARQ 46
>gi|355778495|gb|EHH63531.1| hypothetical protein EGM_16518 [Macaca fascicularis]
Length = 210
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP++ + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPESSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
>gi|355757722|gb|EHH61247.1| hypothetical protein EGM_19210, partial [Macaca fascicularis]
Length = 185
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 12 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
HPK KS G + G+ K + E +K PY+ KA K K EYEKD+ Y
Sbjct: 108 HPKIKSTNP-GISIGDVTKKLGEIEKQPYIIKAAKLKEEYEKDVAEY 153
>gi|194208319|ref|XP_001498869.2| PREDICTED: high mobility group protein B2-like [Equus caballus]
Length = 210
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|167396118|ref|XP_001741910.1| non-histone chromosomal protein [Entamoeba dispar SAW760]
gi|165893321|gb|EDR21615.1| non-histone chromosomal protein, putative [Entamoeba dispar
SAW760]
Length = 111
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN- 59
+ E R K++HP K + K E+WK++ E +K Y AKA+ + +Y+KDM+ Y
Sbjct: 37 LNEHRASIKEEHPDIK-FTEISKVASEQWKALGEEEKKEYQAKADAAREQYKKDMEKYTG 95
Query: 60 RRQA 63
++QA
Sbjct: 96 KKQA 99
>gi|348566777|ref|XP_003469178.1| PREDICTED: high mobility group protein B2-like [Cavia porcellus]
Length = 211
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 107 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 163
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|74153177|dbj|BAB27638.3| unnamed protein product [Mus musculus]
Length = 191
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 110 RPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
>gi|291413997|ref|XP_002723251.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|91091658|ref|XP_971261.1| PREDICTED: similar to predicted protein [Tribolium castaneum]
gi|270000885|gb|EEZ97332.1| hypothetical protein TcasGA2_TC011144 [Tribolium castaneum]
Length = 452
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65
+ K G KW ++S +K PY+AKAE+ K Y +++K Y RQ++
Sbjct: 211 ITKVIGNKWSNLSLEEKRPYLAKAEEDKRRYREELKQY--RQSDA 253
>gi|453083241|gb|EMF11287.1| HMG_box-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 109
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
R++ ++D+P K VGK GE+WK+++E KAPY AKA K YE++ Y
Sbjct: 45 RDKVREDNPGIK-FGEVGKLLGERWKALNEKQKAPYEAKAAADKKRYEEEKAAYT 98
>gi|49258307|pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 78
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 21 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 75
>gi|269994370|dbj|BAI50349.1| SRY-box 9 [Leiolepis reevesii rubritaeniata]
Length = 200
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 48 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 107
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 108 SEQTHISPN 116
>gi|334323271|ref|XP_003340370.1| PREDICTED: high mobility group protein B1-like [Monodelphis
domestica]
Length = 216
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
E+R + K +HP S+ V K GE W + + DK PY KA K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAILKEKYEKDIAAYRT 164
Query: 61 R 61
+
Sbjct: 165 K 165
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFQDMAKADKVHYEREMKTY 78
>gi|401623234|gb|EJS41340.1| nhp6ap [Saccharomyces arboricola H-6]
Length = 93
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
VGK GEKWK+++ +K PY AKA+ K YE + + YN A
Sbjct: 51 VGKKLGEKWKALTPEEKLPYEAKAQADKKRYESEKELYNATLA 93
>gi|62660600|ref|XP_573625.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|392333089|ref|XP_003752789.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
>gi|119610319|gb|EAW89913.1| hCG1647425 [Homo sapiens]
Length = 254
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 10 KDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
K+HP S++ V K GE W ++E DK PY KA K K +YEKD+ +
Sbjct: 141 KEHP-GLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFG 189
>gi|45382755|ref|NP_990817.1| high mobility group protein B2 [Gallus gallus]
gi|123373|sp|P26584.2|HMGB2_CHICK RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|211927|gb|AAA48818.1| non-histone chromosomal protein [Gallus gallus]
Length = 207
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K DHP S+ K GE W DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A + E+WK+MS +K + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDREMKNY 78
>gi|71019847|ref|XP_760154.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
gi|46099871|gb|EAK85104.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
Length = 286
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+ K GGE+WK MS KAPY +A + +Y++D++ YN
Sbjct: 238 ITEFSKRGGERWKQMSAEQKAPYEQRALQALEQYKRDLELYN 279
>gi|426251515|ref|XP_004019467.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|426230076|ref|XP_004009107.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|118343822|ref|NP_001071733.1| transcription factor protein [Ciona intestinalis]
gi|70569841|dbj|BAE06487.1| transcription factor protein [Ciona intestinalis]
Length = 204
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++K+ HP + V A + ++WK M++ +K + AEK + YE++MK+Y
Sbjct: 21 VQTCREEHKRKHPNEQVVFAEFSRKCAKRWKPMTDKEKKTFTDMAEKDRQRYEREMKDY 79
>gi|281349442|gb|EFB25026.1| hypothetical protein PANDA_005395 [Ailuropoda melanoleuca]
Length = 181
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 7 QYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
Q K+++P N SV V KA G+ W + ++A+K PY +A + +Y+++++ Y +++
Sbjct: 110 QLKRENP-NWSVVQVAKASGKMWSATTDAEKQPYEQRAALLRAKYQEELEIYRKQR 164
>gi|109076196|ref|XP_001085665.1| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 321
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 220 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 276
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 134 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 192
>gi|67475910|ref|XP_653586.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|56470556|gb|EAL48200.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|449703217|gb|EMD43706.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica KU27]
Length = 111
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN- 59
+ E R K++HP K V + K E+WK++ E +K Y KA+ K +Y+KD++ Y+
Sbjct: 37 LNEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEYQTKADAAKEQYKKDIEKYDG 95
Query: 60 RRQA 63
++QA
Sbjct: 96 KKQA 99
>gi|452988900|gb|EME88655.1| hypothetical protein MYCFIDRAFT_57980 [Pseudocercospora fijiensis
CIRAD86]
Length = 108
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
VGK GEKWK++ E KAPY AKA K YE++ Y
Sbjct: 60 VGKMLGEKWKALGEKQKAPYEAKAAADKKRYEEEKAAYT 98
>gi|444732758|gb|ELW73033.1| High mobility group protein B2 [Tupaia chinensis]
Length = 234
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 142 EHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 196
>gi|392881260|gb|AFM89462.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|146747219|gb|ABQ44208.1| SRY-box containing gene 9 [Aspidoscelis inornata]
Length = 321
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 55 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 114
Query: 74 SEKSMSEVN 82
+E++ N
Sbjct: 115 TEQTHISPN 123
>gi|392873904|gb|AFM85784.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|328350132|emb|CCA36532.1| Hepatocyte growth factor-regulated tyrosine kinase substrate
[Komagataella pastoris CBS 7435]
Length = 725
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
+GK GEKWK++ KAPY +KAE+ K YE + Y ++Q E
Sbjct: 679 IGKLLGEKWKALDAEGKAPYESKAEEDKKRYELEKAEYFKKQHE 722
>gi|392881066|gb|AFM89365.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|407850184|gb|EKG04681.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
F ++K HP + SV KA G WK +S+ K PY A A+K K Y+++M
Sbjct: 215 FVGDFRKKHP-DLSVTETSKAAGAAWKELSDEMKKPYEAMAQKDKERYQREM 265
>gi|6680229|ref|NP_032278.1| high mobility group protein B2 [Mus musculus]
gi|1708259|sp|P30681.3|HMGB2_MOUSE RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|609169|emb|CAA86727.1| high mobility group 2 protein [Mus musculus]
gi|12834643|dbj|BAB22988.1| unnamed protein product [Mus musculus]
gi|12842629|dbj|BAB25672.1| unnamed protein product [Mus musculus]
gi|12849395|dbj|BAB28323.1| unnamed protein product [Mus musculus]
gi|52789313|gb|AAH83108.1| High mobility group box 2 [Mus musculus]
gi|55777186|gb|AAH46759.1| High mobility group box 2 [Mus musculus]
gi|74179666|dbj|BAE22481.1| unnamed protein product [Mus musculus]
gi|74179668|dbj|BAE22482.1| unnamed protein product [Mus musculus]
gi|74226660|dbj|BAE26982.1| unnamed protein product [Mus musculus]
Length = 210
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 110 RPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
>gi|11527222|gb|AAG36939.1|AF267733_1 high mobility group protein B2 [Mus musculus]
gi|12805183|gb|AAH02050.1| High mobility group box 2 [Mus musculus]
gi|74150328|dbj|BAE32214.1| unnamed protein product [Mus musculus]
gi|148672860|gb|EDL04807.1| mCG4647 [Mus musculus]
Length = 210
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 110 RPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
>gi|70999478|ref|XP_754458.1| nucleosome binding protein (Nhp6a) [Aspergillus fumigatus Af293]
gi|74674416|sp|Q4WY33.1|NHP6_ASPFU RecName: Full=Non-histone chromosomal protein 6
gi|66852095|gb|EAL92420.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
fumigatus Af293]
gi|159127475|gb|EDP52590.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
fumigatus A1163]
Length = 104
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
S VGK GE+WK++S++++ PY KA K YE + +YN Q E
Sbjct: 51 SFGQVGKMLGERWKALSDSERRPYEEKAAADKKRYEDEKASYNAAQDE 98
>gi|400599237|gb|EJP66941.1| HMG box protein [Beauveria bassiana ARSEF 2860]
Length = 96
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++S+ + PY AKA K YE + YN
Sbjct: 41 RENVREENP-GVSFGQVGKILGERWKALSDKQRTPYEAKAAADKKRYEDEKAAYN 94
>gi|391344132|ref|XP_003746357.1| PREDICTED: high mobility group protein DSP1-like isoform 1
[Metaseiulus occidentalis]
gi|391344134|ref|XP_003746358.1| PREDICTED: high mobility group protein DSP1-like isoform 2
[Metaseiulus occidentalis]
Length = 187
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP N A K E+WK+M+E +K + A K K YE +M Y
Sbjct: 18 VQTCREEHKKKHPNENVVFAEFSKKCAERWKTMNEPEKQRFHLMAAKDKKRYENEMSTY 76
>gi|291414887|ref|XP_002723687.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 209
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>gi|195502614|ref|XP_002098301.1| GE10308 [Drosophila yakuba]
gi|194184402|gb|EDW98013.1| GE10308 [Drosophila yakuba]
Length = 138
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE K ++P+ K + V GGE W+SM E DK+ + A + EY+K+++++N
Sbjct: 24 REHIKSEYPEFK-IQEVAVKGGELWRSMPEEDKSVWQESASQAMAEYKKELEHWN 77
>gi|189205162|ref|XP_001938916.1| non-histone chromosomal protein 6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330923152|ref|XP_003300124.1| hypothetical protein PTT_11280 [Pyrenophora teres f. teres 0-1]
gi|187986015|gb|EDU51503.1| non-histone chromosomal protein 6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311325919|gb|EFQ91802.1| hypothetical protein PTT_11280 [Pyrenophora teres f. teres 0-1]
Length = 106
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ ++D+P K VGK GEKWK+++E + PY AKA K YE++ Y
Sbjct: 43 REKVREDNPGIK-FGEVGKLLGEKWKALNEKQRTPYEAKAAADKKRYEEEKAAY 95
>gi|351702997|gb|EHB05916.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 204
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S V K GE W + + DK PY KA + K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSTGDVAKKLGEMWNNTAAGDKQPYEKKAAELKEKYEKDIAAY 162
>gi|392884250|gb|AFM90957.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|392878084|gb|AFM87874.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|392877754|gb|AFM87709.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|392876906|gb|AFM87285.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|387913840|gb|AFK10529.1| high mobility group protein B1-like protein [Callorhinchus milii]
gi|392873522|gb|AFM85593.1| high mobility group protein [Callorhinchus milii]
gi|392873780|gb|AFM85722.1| high mobility group protein [Callorhinchus milii]
gi|392873902|gb|AFM85783.1| high mobility group protein [Callorhinchus milii]
gi|392873908|gb|AFM85786.1| high mobility group protein [Callorhinchus milii]
gi|392873950|gb|AFM85807.1| high mobility group protein [Callorhinchus milii]
gi|392873998|gb|AFM85831.1| high mobility group protein [Callorhinchus milii]
gi|392874244|gb|AFM85954.1| high mobility group protein [Callorhinchus milii]
gi|392874940|gb|AFM86302.1| high mobility group protein [Callorhinchus milii]
gi|392876248|gb|AFM86956.1| high mobility group protein [Callorhinchus milii]
gi|392876254|gb|AFM86959.1| high mobility group protein [Callorhinchus milii]
gi|392876362|gb|AFM87013.1| high mobility group protein [Callorhinchus milii]
gi|392876946|gb|AFM87305.1| high mobility group protein [Callorhinchus milii]
gi|392877468|gb|AFM87566.1| high mobility group protein [Callorhinchus milii]
gi|392877522|gb|AFM87593.1| high mobility group protein [Callorhinchus milii]
gi|392877744|gb|AFM87704.1| high mobility group protein [Callorhinchus milii]
gi|392879776|gb|AFM88720.1| high mobility group protein [Callorhinchus milii]
gi|392880382|gb|AFM89023.1| high mobility group protein [Callorhinchus milii]
gi|392880776|gb|AFM89220.1| high mobility group protein [Callorhinchus milii]
gi|392881032|gb|AFM89348.1| high mobility group protein [Callorhinchus milii]
gi|392881292|gb|AFM89478.1| high mobility group protein [Callorhinchus milii]
gi|392881318|gb|AFM89491.1| high mobility group protein [Callorhinchus milii]
gi|392883640|gb|AFM90652.1| high mobility group protein [Callorhinchus milii]
gi|392883646|gb|AFM90655.1| high mobility group protein [Callorhinchus milii]
gi|392883680|gb|AFM90672.1| high mobility group protein [Callorhinchus milii]
gi|392883988|gb|AFM90826.1| high mobility group protein [Callorhinchus milii]
gi|392884098|gb|AFM90881.1| high mobility group protein [Callorhinchus milii]
gi|392884156|gb|AFM90910.1| high mobility group protein [Callorhinchus milii]
gi|392884178|gb|AFM90921.1| high mobility group protein [Callorhinchus milii]
gi|392884306|gb|AFM90985.1| high mobility group protein [Callorhinchus milii]
gi|392884308|gb|AFM90986.1| high mobility group protein [Callorhinchus milii]
gi|392884314|gb|AFM90989.1| high mobility group protein [Callorhinchus milii]
gi|392884420|gb|AFM91042.1| high mobility group protein [Callorhinchus milii]
gi|392884450|gb|AFM91057.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|343425092|emb|CBQ68629.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 290
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 23 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
K GGE+WK MS KAPY +A + +Y++D++ YN
Sbjct: 247 KRGGERWKQMSAEQKAPYEQRALQALEQYKRDLEIYN 283
>gi|410930542|ref|XP_003978657.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 201
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R K+ +P S+ K GE W +++++K PY KA+K + +Y++DM Y
Sbjct: 108 CSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKLTQSEKQPYEEKAQKLREKYDRDMVAY 164
>gi|392883678|gb|AFM90671.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|392873666|gb|AFM85665.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|195040353|ref|XP_001991052.1| GH12282 [Drosophila grimshawi]
gi|193900810|gb|EDV99676.1| GH12282 [Drosophila grimshawi]
Length = 402
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE++M+NY
Sbjct: 196 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEQEMQNY 254
>gi|392883682|gb|AFM90673.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|255073265|ref|XP_002500307.1| set domain protein [Micromonas sp. RCC299]
gi|226515569|gb|ACO61565.1| set domain protein [Micromonas sp. RCC299]
Length = 1496
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
++AVGK GE+W+ +S+ +K PY KAE+ + EY
Sbjct: 702 ISAVGKLMGERWRKLSDEEKFPYAIKAEEARHEY 735
>gi|409075858|gb|EKM76234.1| hypothetical protein AGABI1DRAFT_16670, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426193694|gb|EKV43627.1| hypothetical protein AGABI2DRAFT_56560, partial [Agaricus bisporus
var. bisporus H97]
Length = 106
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYV--AKAEKRKVEYEKDMKNYN 59
+++RE+ K ++P+ VGK G KWK M E +K PYV A A+K + E EK +
Sbjct: 35 QDWRERIKTENPEA-GFGEVGKLLGAKWKEMDEEEKKPYVEQATADKTRAEKEKASYDSG 93
Query: 60 RRQAEGTKPEEEE 72
++ A G EE+E
Sbjct: 94 KKSASGDDEEEDE 106
>gi|301087307|gb|ADK60865.1| Sox9 [Andrias davidianus]
Length = 243
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E +K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 192
Query: 74 SEKSMSEVN 82
SE + N
Sbjct: 193 SEPTHISPN 201
>gi|6435676|pdb|1CG7|A Chain A, Hmg Protein Nhp6a From Saccharomyces Cerevisiae
Length = 93
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VGK GEKWK+++ +K PY AKA+ K YE + + YN A
Sbjct: 47 TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93
>gi|149236976|ref|XP_001524365.1| hypothetical protein LELG_04337 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451900|gb|EDK46156.1| hypothetical protein LELG_04337 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 93
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VGK GEKWK++ DK PY KAE K YEK+ Y ++ +
Sbjct: 46 TFGQVGKLLGEKWKALGSEDKVPYENKAEADKKRYEKEKAEYAKKNS 92
>gi|335892930|gb|AEH59760.1| high mobility group box 2 [Lethenteron camtschaticum]
Length = 194
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +KA + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSPKEKARFEEMAKADKARYDREMKNY 78
>gi|321453063|gb|EFX64340.1| hypothetical protein DAPPUDRAFT_305068 [Daphnia pulex]
Length = 723
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+GK G+ W+ + + DK +V + E KVEYE+ +K Y+ A
Sbjct: 125 IGKIIGQMWRDLPDGDKQEFVEEYETEKVEYERTLKAYHNSPA 167
>gi|392876742|gb|AFM87203.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|291415825|ref|XP_002724150.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEHSVKDKQPYEQKAAKLKEKYEKDIAAY 162
>gi|291395415|ref|XP_002714100.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSINFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKACYDREMKNY 78
>gi|47190944|emb|CAF93003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R K+ P S+ K GE W +S+++K PY KA+K + +Y++DM Y
Sbjct: 111 CSEYRPSVKQQFP-GLSIGDCAKKLGEMWSKLSQSEKQPYEEKAQKLREKYDRDMVAY 167
>gi|268565525|ref|XP_002639471.1| Hypothetical protein CBG04066 [Caenorhabditis briggsae]
Length = 689
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+V V K GG KWK MS DK + KA + K+ YE +MK Y
Sbjct: 582 TVPEVAKKGGAKWKEMSADDKKEWEQKAAQDKIRYENEMKEY 623
>gi|74185387|dbj|BAE30167.1| unnamed protein product [Mus musculus]
Length = 181
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 110 RPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
>gi|403417437|emb|CCM04137.1| predicted protein [Fibroporia radiculosa]
Length = 117
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
+++RE+ K ++P + +GK G KWK + E++K PY+ +A + K EK+ +Y+
Sbjct: 44 QDWRERIKAENP-DAGFGEIGKLLGAKWKELDESEKKPYIEQAARDKARAEKEKTDYD 100
>gi|123456225|ref|XP_001315850.1| HMG box family protein [Trichomonas vaginalis G3]
gi|121898539|gb|EAY03627.1| HMG box family protein [Trichomonas vaginalis G3]
Length = 100
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
R Q K D+P + + K GE WK++SE +K PY+ KAE K E+
Sbjct: 14 RPQVKADNP-GIAFGDIAKKLGEMWKNLSEEEKKPYIEKAEAEKAEH 59
>gi|397502952|ref|XP_003822100.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
gi|410056873|ref|XP_003317692.2| PREDICTED: high mobility group protein B3-like [Pan troglodytes]
Length = 221
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K +P S+ + K GE W + S+ +K PY+ KA K +YEKD+ +Y
Sbjct: 123 CSEFHPKIKSTNP-GISIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADY 179
>gi|449518465|ref|XP_004166262.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 65
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Query: 46 KRKVEYEKDMKNYNRRQAEGTKPEEEEESEKSMSEVNDED 85
+RK EYEK M+ Y+ ++A ++EESE+S SEVNDED
Sbjct: 7 RRKAEYEKLMRAYDSKKASAA---DDEESERSKSEVNDED 43
>gi|6325309|ref|NP_015377.1| Nhp6ap [Saccharomyces cerevisiae S288c]
gi|128182|sp|P11632.1|NHP6A_YEAST RecName: Full=Non-histone chromosomal protein 6A
gi|24987379|pdb|1J5N|A Chain A, Solution Structure Of The Non-Sequence-Specific Hmgb
Protein Nhp6a In Complex With Sry Dna
gi|24987655|pdb|1LWM|A Chain A, Solution Structure Of The Sequence-Non-Specific Hmgb
Protein Nhp6a
gi|4034|emb|CAA33377.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171883|gb|AAA34754.1| high mobility group non-histone protein [Saccharomyces
cerevisiae]
gi|805034|emb|CAA89171.1| Nhp6ap [Saccharomyces cerevisiae]
gi|1314122|emb|CAA94998.1| Nhp6ap [Saccharomyces cerevisiae]
gi|51013911|gb|AAT93249.1| YPR052C [Saccharomyces cerevisiae]
gi|285815583|tpg|DAA11475.1| TPA: Nhp6ap [Saccharomyces cerevisiae S288c]
gi|392296063|gb|EIW07166.1| Nhp6ap [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 93
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VGK GEKWK+++ +K PY AKA+ K YE + + YN A
Sbjct: 47 TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93
>gi|308238179|ref|NP_001184126.1| structure specific recognition protein 1 [Xenopus (Silurana)
tropicalis]
Length = 695
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K ++P S+ + K GE WKSMS+ K + +AE+ K +YEK MK YN
Sbjct: 556 REKIKSENP-GISITDLSKKAGEIWKSMSKDKKEEWDRRAEEAKRDYEKAMKEYN 609
>gi|395533083|ref|XP_003768593.1| PREDICTED: transcription factor SOX-9-like [Sarcophilus harrisii]
Length = 512
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 192
Query: 74 SEKSMSEVN 82
+E++ N
Sbjct: 193 TEQTHISPN 201
>gi|351697978|gb|EHB00897.1| Transcription factor SOX-9 [Heterocephalus glaber]
Length = 507
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEAEEA 192
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 193 SEQTHISPN 201
>gi|392876622|gb|AFM87143.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 5 REQYKKDHPKNKSV--AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + SV + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHP-DSSVDSSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|126308526|ref|XP_001370056.1| PREDICTED: transcription factor SOX-9 [Monodelphis domestica]
Length = 512
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 192
Query: 74 SEKSMSEVN 82
+E++ N
Sbjct: 193 TEQTHISPN 201
>gi|119623033|gb|EAX02628.1| hCG1644442 [Homo sapiens]
Length = 201
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K +P S+ + K GE W + S+ +K PY+ KA K +YEKD+ +Y
Sbjct: 105 EFHPKIKSTNP-GISIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADY 159
>gi|195134440|ref|XP_002011645.1| GI10980 [Drosophila mojavensis]
gi|193906768|gb|EDW05635.1| GI10980 [Drosophila mojavensis]
Length = 402
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE++M+NY
Sbjct: 194 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEQEMQNY 252
>gi|151942838|gb|EDN61184.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190407991|gb|EDV11256.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256268928|gb|EEU04275.1| Nhp6ap [Saccharomyces cerevisiae JAY291]
gi|259150205|emb|CAY87008.1| Nhp6ap [Saccharomyces cerevisiae EC1118]
gi|349581863|dbj|GAA27020.1| K7_Nhp6ap [Saccharomyces cerevisiae Kyokai no. 7]
Length = 93
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VGK GEKWK+++ +K PY AKA+ K YE + + YN A
Sbjct: 47 TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93
>gi|268577181|ref|XP_002643572.1| Hypothetical protein CBG16279 [Caenorhabditis briggsae]
Length = 241
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ K GE WK M++ DK PY+ +A K K ++EK+ +Y
Sbjct: 94 ISKQLGEVWKGMTDEDKKPYIDEAHKLKADFEKNHPDY 131
>gi|327268628|ref|XP_003219098.1| PREDICTED: high mobility group protein B2-like [Anolis
carolinensis]
Length = 209
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K DHP S+ K GE W + DK P+ KA K K +Y+KD+ Y
Sbjct: 104 CSEHRPKIKSDHP-GLSIGDTAKKLGEMWSLQTAKDKLPFEQKALKLKEKYDKDIAAY 160
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+W++MS +K + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWRTMSAKEKGKFEDMAKGDKARYDREMKNY 78
>gi|223649078|gb|ACN11297.1| FACT complex subunit SSRP1 [Salmo salar]
Length = 711
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K ++P S+ + K GE WK + + DK + KAE+ K YEK MK Y
Sbjct: 558 RERIKSENP-GISITEISKKAGEMWKQIGKEDKEEWDGKAEEAKKNYEKAMKEYRESGGG 616
Query: 65 GTKPEEEEESEKS 77
+ P ++E +K+
Sbjct: 617 SSTPAKKESKKKA 629
>gi|84380305|gb|ABC58685.1| HMG box protein SoxE3 [Petromyzon marinus]
Length = 539
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN---RRQAEGTKPEEEEESE 75
A + K G+ W+ +SE +K P+V +AE+ +V+++KD +Y RR+ G + E +S
Sbjct: 157 AELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSGKNGQSESDSS 216
Query: 76 KSMSEVN 82
+ +
Sbjct: 217 GEQTHIT 223
>gi|449670744|ref|XP_002158984.2| PREDICTED: high mobility group protein 20A-like [Hydra
magnipapillata]
Length = 312
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E RE+++ ++P + V K G+KW S+ +++K Y+ +AEK K +Y K ++ Y +
Sbjct: 64 LNEHREKFRIENP-DMPFHEVTKILGQKWSSLDQSEKQQYLYEAEKDKEKYMKALQGYQQ 122
Query: 61 RQA 63
A
Sbjct: 123 SSA 125
>gi|49250826|gb|AAH74541.1| Ssrp1 protein, partial [Xenopus (Silurana) tropicalis]
Length = 629
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K ++P S+ + K GE WKSMS+ K + +AE+ K +YEK MK YN
Sbjct: 556 REKIKSENP-GISITDLSKKAGEIWKSMSKDKKEEWDRRAEEAKRDYEKAMKEYN 609
>gi|322797840|gb|EFZ19748.1| hypothetical protein SINV_09636 [Solenopsis invicta]
Length = 203
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ R+++KK HP+ K V K +WK+MS+ +K + AEK K Y+ +M+NY
Sbjct: 20 VQTCRQEHKKKHPEEKIVFREFSKKCAMRWKTMSDIEKKRFHEMAEKDKKRYDTEMQNYT 79
>gi|291392907|ref|XP_002712835.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 208
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
E+ + K +HP S+ V K GE W + + DK P KA K KV+YEK + Y
Sbjct: 106 CSEYCPKIKGEHP-GLSIGDVAKKLGEMWNNTAAGDKQPCERKAAKLKVKYEKGIAAY-- 162
Query: 61 RQAEG 65
QA+G
Sbjct: 163 -QAKG 166
>gi|312385331|gb|EFR29858.1| hypothetical protein AND_00899 [Anopheles darlingi]
Length = 174
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ REQ KK++P K V + K GGE W+ M DK+ + KA K K EY K M+++ R
Sbjct: 78 LNSAREQIKKENPGIK-VTEIAKKGGELWRGMK--DKSEWEFKAAKMKDEYNKQMQDFER 134
>gi|222087985|gb|ACM41855.1| high mobility group box 2-like protein [Epinephelus coioides]
Length = 212
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ + RE++K+ HP + A K E+WK+MS +KA + A+ K+ Y+++MK Y
Sbjct: 14 IADCREEHKRKHPGTSVGFAEFSKKCSERWKTMSAKEKAKFEELAKTDKIRYDREMKTY 72
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
E R + K++ P S+ K GE W + S +KAPY AKA K K +YEK++ Y
Sbjct: 102 CSEHRPRIKEECP-GISIGDTAKKLGELWSTQSSKEKAPYEAKAAKLKEKYEKEVAAYRA 160
Query: 61 RQAEG 65
+ G
Sbjct: 161 KGVSG 165
>gi|297303892|ref|XP_002806292.1| PREDICTED: high mobility group-T protein-like [Macaca mulatta]
Length = 159
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 10 KDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
K+HP SV+ V K GE W +E DK PY KA K K +YEKD+ +
Sbjct: 79 KEHP-GLSVSDVAKKLGEMWNYTAEDDKHPYEKKAVKLKEKYEKDIAAF 126
>gi|147866286|emb|CAN79926.1| hypothetical protein VITISV_042446 [Vitis vinifera]
Length = 644
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE KK P + VG+ G+KWK M+ +K PY AKA+ K Y ++ Y
Sbjct: 574 RENIKKSTP-GIAFTEVGRVLGDKWKKMTAEEKEPYEAKAQADKKRYRDEISGY 626
>gi|347962987|ref|XP_311155.4| AGAP000005-PA [Anopheles gambiae str. PEST]
gi|333467412|gb|EAA06432.5| AGAP000005-PA [Anopheles gambiae str. PEST]
Length = 457
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP+ + + A + E+WK+M + +K + AEK K YE +M++Y
Sbjct: 230 VQTCREEHKKKHPEEQVIFAEFSRKCAERWKTMLDKEKQRFHEMAEKDKARYELEMQSY 288
>gi|401839076|gb|EJT42436.1| NHP6A-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 93
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VGK GEKWK+++ +K PY AKA+ K YE + + YN A
Sbjct: 47 TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93
>gi|170056683|ref|XP_001864141.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876428|gb|EDS39811.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 372
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP+ + + A + E+WK+M + +K + AEK K YE +M++Y
Sbjct: 151 VQTCREEHKKKHPEEQVIFAEFSRKCAERWKTMLDKEKQRFHEMAEKDKARYELEMQSY 209
>gi|117307493|dbj|BAF36483.1| SRY-box 9 [Trimeresurus flavoviridis]
Length = 463
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN-----RRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 105 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 164
Query: 74 SEKS 77
SE++
Sbjct: 165 SEQT 168
>gi|203465|gb|AAA40927.1| HMG box (bp. 1168..1428), partial [Rattus norvegicus]
Length = 561
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + K E + EYE+ MK Y
Sbjct: 414 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKGEDARREYEEAMKEY 466
>gi|269931724|gb|ACZ54381.1| SRY-box 9 protein [Monodelphis domestica]
Length = 157
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 74 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 133
Query: 74 SEKSMSEVN 82
+E++ N
Sbjct: 134 TEQTHISPN 142
>gi|195393910|ref|XP_002055595.1| GJ19445 [Drosophila virilis]
gi|194150105|gb|EDW65796.1| GJ19445 [Drosophila virilis]
Length = 403
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 197 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYETEMQNY 255
>gi|189236107|ref|XP_973934.2| PREDICTED: similar to High mobility group protein DSP1 (Protein
dorsal switch 1) [Tribolium castaneum]
Length = 505
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 1 MEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE++KK HP+ N A K E+WK+M + +K + AE K Y+ +MKNY
Sbjct: 318 VQTCREEHKKKHPEENVVFAEFSKKCAERWKTMLDKEKKRFHEMAENDKKRYDDEMKNY- 376
Query: 60 RRQAEGTKPEEEEESEKSMSEVNDED 85
T P+ E++ K +V D +
Sbjct: 377 ------TPPKGEKQRGKKRKQVKDPN 396
>gi|225452706|ref|XP_002282538.1| PREDICTED: FACT complex subunit SSRP1 [Vitis vinifera]
gi|296082859|emb|CBI22160.3| unnamed protein product [Vitis vinifera]
Length = 644
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE KK P + VG+ G+KWK M+ +K PY AKA+ K Y ++ Y
Sbjct: 574 RENIKKSTP-GIAFTEVGRVLGDKWKKMTAEEKEPYEAKAQADKKRYRDEISGY 626
>gi|189409063|ref|NP_001121578.1| SoxF protein [Ciona intestinalis]
gi|70571254|dbj|BAE06709.1| transcription factor protein [Ciona intestinalis]
Length = 796
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + K G+KWK MS DK PY+ +AEK ++++ ++ +Y R
Sbjct: 208 AELSKMLGKKWKEMSNEDKRPYITEAEKLRMKHMQEHPDYKYR 250
>gi|367012149|ref|XP_003680575.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
gi|359748234|emb|CCE91364.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
Length = 93
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VG+ GE+WK+++ +K PY +KAE K YE + + YN +A
Sbjct: 47 TFGQVGRLLGERWKALTPDEKTPYESKAEADKKRYESEKELYNATRA 93
>gi|325303836|tpg|DAA34592.1| TPA_exp: putative HMG-like protein [Amblyomma variegatum]
Length = 145
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP N A K E+WK+MSE +K + A+K K ++ +M +Y
Sbjct: 18 VQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSEGEKKRFHQMADKDKKRFDSEMADY 76
>gi|195025405|ref|XP_001986052.1| GH21151 [Drosophila grimshawi]
gi|193902052|gb|EDW00919.1| GH21151 [Drosophila grimshawi]
Length = 744
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ + REQ K+D+P K V + K GGE WK + DK+ + A K K Y+ +M+NY
Sbjct: 571 LNDTREQIKRDNPGIK-VTEIAKKGGEMWKELK--DKSKWDEAASKDKQRYQDEMRNY 625
>gi|354543436|emb|CCE40155.1| hypothetical protein CPAR2_101930 [Candida parapsilosis]
Length = 315
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
E R+Q ++D P+N + + KA E WK +SE DK P+ E+ ++ Y+K+M Y ++
Sbjct: 182 ERLRQQQQED-PENNT-RDLSKAMTEAWKKLSEEDKQPFYKLYEEDRIRYQKEMVEYTKK 239
Query: 62 Q 62
+
Sbjct: 240 K 240
>gi|302497713|ref|XP_003010856.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
gi|291174401|gb|EFE30216.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
Length = 106
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
N + VGK GE+WK++S+ + PY KA K YE + YN
Sbjct: 48 NITFGQVGKVLGERWKALSDKQRVPYEEKAATDKQRYEDEKAAYN 92
>gi|392883584|gb|AFM90624.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCPERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|195448286|ref|XP_002071591.1| GK25058 [Drosophila willistoni]
gi|194167676|gb|EDW82577.1| GK25058 [Drosophila willistoni]
Length = 406
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 198 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYETEMQNY 256
>gi|323450291|gb|EGB06173.1| hypothetical protein AURANDRAFT_72060 [Aureococcus anophagefferens]
Length = 667
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
R + K+ HP + S+ +G+ G++WK +++ DK PYV A Y+++M Y +Q
Sbjct: 597 RAEVKEQHP-DFSLGDIGRELGKRWKELTDDDKKPYVDLATADAERYDREMAAYKAKQ 653
>gi|193664382|ref|XP_001944154.1| PREDICTED: hypothetical protein LOC100167132 [Acyrthosiphon pisum]
Length = 410
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP +N A K E+WK+M+E +K + A+K K+ Y+ +M++Y
Sbjct: 207 VQTCREEHKKKHPDENVIFAEFSKKCAERWKTMNEKEKKRFHEMADKDKLRYDTEMQSY 265
>gi|171362742|dbj|BAG14376.1| SoxE family protein E3 [Lethenteron camtschaticum]
Length = 401
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN---RRQAEGTKPEEEEESE 75
A + K G+ W+ +SE +K P+V +AE+ +V+++KD +Y RR+ G + E +S
Sbjct: 22 AELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSGKNGQSESDSS 81
Query: 76 KSMSEVN 82
+ +
Sbjct: 82 GEQTHIT 88
>gi|398406589|ref|XP_003854760.1| HMGB family protein [Zymoseptoria tritici IPO323]
gi|339474644|gb|EGP89736.1| HMGB family protein [Zymoseptoria tritici IPO323]
Length = 111
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
VGK GE+WK ++E K PY AKA K YE++ K Y
Sbjct: 59 VGKLLGERWKGLNEKQKTPYEAKAAADKKRYEEEKKAY 96
>gi|260806967|ref|XP_002598355.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
gi|229283627|gb|EEN54367.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
Length = 223
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
R + + HP + V + K G +WK +S++DKA Y KA+ K Y+K++ Y R
Sbjct: 114 RPKVRAAHP-DFQVGEIAKILGRQWKEISDSDKAKYEKKAQTEKARYQKELAEYKR 168
>gi|355757371|gb|EHH60896.1| hypothetical protein EGM_18788, partial [Macaca fascicularis]
Length = 189
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 10 KDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
K+HP SV+ V K GE W +E DK PY KA K K +YEKD+ +
Sbjct: 110 KEHP-GLSVSDVAKKLGEMWNYTAEDDKHPYEKKAVKLKEKYEKDIAAF 157
>gi|294463267|gb|ADE77169.1| unknown [Picea sitchensis]
Length = 482
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
N +V + K GE+WK+M++ ++APY A + K +Y +M+ Y +++AE
Sbjct: 275 NHNVLQIAKILGEEWKNMTKEERAPYEQIAAEAKEKYMGEMELYKQKKAE 324
>gi|141795291|gb|AAI39584.1| Hmgb3a protein [Danio rerio]
Length = 93
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 26 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65
GE W +++A+K P++ KA K K +Y+KD+ +Y + G
Sbjct: 7 GEMWNGLTDANKQPFLMKANKLKDKYQKDVADYKTKSKAG 46
>gi|151301198|ref|NP_001093087.1| mobility group protein 1B [Bombyx mori]
gi|95102634|gb|ABF51255.1| mobility group protein 1B [Bombyx mori]
Length = 119
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
REQ K ++P + V + K GGE WKSM DK + KA K K +Y KD+++Y
Sbjct: 20 REQIKSENPGLR-VTEIAKKGGEIWKSMK--DKTEWEQKAAKAKEQYAKDLESY 70
>gi|109490746|ref|XP_001074778.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392351213|ref|XP_003750876.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 211
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY A K K +YEKD+ Y
Sbjct: 108 EYRPKIKGEHP-GLSIGDVVKKLGEMWTNTAADDKQPYEKMAAKLKEKYEKDIAAY 162
>gi|241122588|ref|XP_002403591.1| DNA-binding protein, putative [Ixodes scapularis]
gi|215493481|gb|EEC03122.1| DNA-binding protein, putative [Ixodes scapularis]
Length = 207
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 1 MEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE++KK HP N A K E+WK+MSE +K + A+K K ++ +M +Y
Sbjct: 18 VQTCREEHKKKHPSENVVFAEFSKKCAERWKTMSEGEKKRFHQMADKDKKRFDSEMADYK 77
Query: 60 RRQAEGTK 67
+ E +K
Sbjct: 78 PPKGEKSK 85
>gi|444712159|gb|ELW53090.1| High mobility group protein B3 [Tupaia chinensis]
Length = 95
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 11 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 57
+ P S+ V K GE W ++S+++K PY+ K K K + EKD+ N
Sbjct: 21 NPPSLASLGDVAKKLGEMWNNLSDSEKQPYITKVTKLKEKSEKDVAN 67
>gi|195537625|dbj|BAG67029.1| SoxE protein [Lethenteron camtschaticum]
Length = 446
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN---RRQAEGTKPEEEEESE 75
A + K G+ W+ +SE +K P+V +AE+ +V+++KD +Y RR+ G + E +S
Sbjct: 69 AELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSGKNGQSESDSS 128
Query: 76 KSMSEVN 82
+ +
Sbjct: 129 GEQTHIT 135
>gi|45551469|ref|NP_727959.2| dorsal switch protein 1, isoform D [Drosophila melanogaster]
gi|45447020|gb|AAN09394.2| dorsal switch protein 1, isoform D [Drosophila melanogaster]
gi|327180774|gb|AEA30996.1| RE44118p [Drosophila melanogaster]
Length = 386
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 183 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 241
>gi|24642472|ref|NP_727960.1| dorsal switch protein 1, isoform A [Drosophila melanogaster]
gi|24642474|ref|NP_727961.1| dorsal switch protein 1, isoform B [Drosophila melanogaster]
gi|24642476|ref|NP_542446.2| dorsal switch protein 1, isoform C [Drosophila melanogaster]
gi|16768340|gb|AAL28389.1| GM02110p [Drosophila melanogaster]
gi|22832356|gb|AAN09395.1| dorsal switch protein 1, isoform A [Drosophila melanogaster]
gi|22832357|gb|AAN09396.1| dorsal switch protein 1, isoform B [Drosophila melanogaster]
gi|22832358|gb|AAF48594.2| dorsal switch protein 1, isoform C [Drosophila melanogaster]
gi|220943192|gb|ACL84139.1| Dsp1-PA [synthetic construct]
gi|220953466|gb|ACL89276.1| Dsp1-PA [synthetic construct]
Length = 385
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 182 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 240
>gi|221329973|ref|NP_001138203.1| dorsal switch protein 1, isoform F [Drosophila melanogaster]
gi|220901792|gb|ACL82935.1| dorsal switch protein 1, isoform F [Drosophila melanogaster]
Length = 397
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 194 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 252
>gi|194893856|ref|XP_001977954.1| GG17955 [Drosophila erecta]
gi|195567092|ref|XP_002107106.1| GD17278 [Drosophila simulans]
gi|190649603|gb|EDV46881.1| GG17955 [Drosophila erecta]
gi|194204505|gb|EDX18081.1| GD17278 [Drosophila simulans]
Length = 393
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 190 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 248
>gi|395542387|ref|XP_003773114.1| PREDICTED: high mobility group protein B2 isoform 1 [Sarcophilus
harrisii]
gi|395542389|ref|XP_003773115.1| PREDICTED: high mobility group protein B2 isoform 2 [Sarcophilus
harrisii]
Length = 207
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY K K K +YEKD+ Y
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGELWSEQSAKDKLPYEQKVAKLKEKYEKDIAAY 162
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLAKGDKARYDREMKNY 78
>gi|126331239|ref|XP_001365344.1| PREDICTED: high mobility group protein B2-like [Monodelphis
domestica]
Length = 207
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY K K K +YEKD+ Y
Sbjct: 108 EHRPKIKSEHP-GLSIGDTAKKLGELWSEQSAKDKLPYEQKVAKLKEKYEKDIAAY 162
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSPVNFAEFSKKCSERWKTMSAKEKSKFEDLAKGDKARYDREMKNY 78
>gi|45555716|ref|NP_996485.1| dorsal switch protein 1, isoform E [Drosophila melanogaster]
gi|17366497|sp|Q24537.1|HMG2_DROME RecName: Full=High mobility group protein DSP1; AltName:
Full=Protein dorsal switch 1
gi|1150375|emb|CAA61938.1| ssrp2 [Drosophila melanogaster]
gi|45447019|gb|AAS65386.1| dorsal switch protein 1, isoform E [Drosophila melanogaster]
Length = 393
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 190 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 248
>gi|260166759|gb|ACX32991.1| RE09522p [Drosophila melanogaster]
Length = 411
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 208 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 266
>gi|194770156|ref|XP_001967163.1| GF19115 [Drosophila ananassae]
gi|190619283|gb|EDV34807.1| GF19115 [Drosophila ananassae]
Length = 387
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 184 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 242
>gi|396490529|ref|XP_003843357.1| hypothetical protein LEMA_P074670.1 [Leptosphaeria maculans JN3]
gi|312219936|emb|CBX99878.1| hypothetical protein LEMA_P074670.1 [Leptosphaeria maculans JN3]
Length = 71
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
RE+ ++D+P K VGK GEKWK+++E + PY AKA K Y
Sbjct: 8 REKVREDNPGIK-FGEVGKVLGEKWKALNEKQRTPYEAKAAADKKRY 53
>gi|158297853|ref|XP_318023.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|158297857|ref|XP_001689081.1| AGAP004789-PA [Anopheles gambiae str. PEST]
gi|157014526|gb|EAA13138.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|157014528|gb|EDO63498.1| AGAP004789-PA [Anopheles gambiae str. PEST]
Length = 324
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
M E RE ++ HP N + V K E+W +SE K PY+ AE K Y K++ Y
Sbjct: 85 MNEHREGVRQKHP-NLTPIEVTKIMAEEWSKLSEERKKPYLEAAEVDKERYNKEISEY 141
>gi|451996730|gb|EMD89196.1| hypothetical protein COCHEDRAFT_1107529 [Cochliobolus
heterostrophus C5]
Length = 105
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ ++D+P K VGK GEKWK++++ + PY AKA K YE++ Y
Sbjct: 42 REKVREDNPGIK-FGEVGKLLGEKWKALNDKQRQPYEAKAALDKKRYEQEKAAYT 95
>gi|356496334|ref|XP_003517023.1| PREDICTED: FACT complex subunit SSRP1-like [Glycine max]
Length = 640
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
RE KK +P S V + GEKWK +S +K PY AKA + K Y+ ++ Y Q
Sbjct: 571 RENLKKTNP-GISFTDVSRVLGEKWKKLSVEEKEPYEAKAREDKKRYKDEISGYKNPQ 627
>gi|195479189|ref|XP_002100798.1| GE17263 [Drosophila yakuba]
gi|194188322|gb|EDX01906.1| GE17263 [Drosophila yakuba]
Length = 394
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 191 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 249
>gi|11526785|gb|AAG36779.1| Sox9 [Eublepharis macularius]
Length = 490
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y
Sbjct: 129 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDY 168
>gi|449478706|ref|XP_002191643.2| PREDICTED: transcription factor Sox-9 [Taeniopygia guttata]
Length = 267
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 133 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEG 192
Query: 74 SEKSMSEVN 82
+E++ N
Sbjct: 193 AEQTHISPN 201
>gi|392876202|gb|AFM86933.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y+++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQRSERWKAMTPKDKGKFEDLAKNDKVRYDREMRNY 78
>gi|340383933|ref|XP_003390470.1| PREDICTED: FACT complex subunit SSRP1-like, partial [Amphimedon
queenslandica]
Length = 410
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
++E R KK HP+ S+ + K G+ WK + DK+ + KA+K K +Y DMK Y R
Sbjct: 292 LQEMRPSLKKKHPE-LSITEMSKKAGQLWKELK--DKSKWEEKAKKLKEQYLIDMKEYER 348
>gi|80973855|gb|ABB53636.1| Sox9 [Petromyzon marinus]
Length = 436
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN---RRQAEGTKPEEEEESE 75
A + K G+ W+ +SE +K P+V +AE+ +V+++KD +Y RR+ G + E +S
Sbjct: 56 AELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSGKNGQSESDSS 115
Query: 76 KSMSEVN 82
+ +
Sbjct: 116 GEQTHIT 122
>gi|148696675|gb|EDL28622.1| mCG11166 [Mus musculus]
Length = 160
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 60 RPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 112
>gi|195130653|ref|XP_002009766.1| GI15536 [Drosophila mojavensis]
gi|193908216|gb|EDW07083.1| GI15536 [Drosophila mojavensis]
Length = 753
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 9 KKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
K HP+ K + +GK G WK +SE ++ Y+ + E K+EYEK +K Y++ A
Sbjct: 116 KAQHPELK-LWELGKKIGVMWKQLSEEERTEYIDEYEAEKLEYEKALKAYHQTPA 169
>gi|29825377|gb|AAO92280.1| putative HMG-like protein [Dermacentor variabilis]
Length = 208
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP N A K E+WK+MSE++K + A+K K ++ +M +Y
Sbjct: 18 VQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSESEKKRFHQMADKDKKRFDTEMADY 76
>gi|340052816|emb|CCC47102.1| putative high mobility group protein [Trypanosoma vivax Y486]
Length = 271
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54
F ++++ HP N S+ KA G W+ +S+ K PY A A+K K YEK+
Sbjct: 216 FSKEFRSKHP-NLSMTEGSKAAGAAWRELSDEKKKPYEAMAQKDKERYEKE 265
>gi|587104|emb|CAA57212.1| unnamed protein product [Drosophila melanogaster]
Length = 328
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 125 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 183
>gi|551090|gb|AAA50238.1| DNA-binding protein [Drosophila melanogaster]
Length = 393
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 190 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 248
>gi|395850201|ref|XP_003797684.1| PREDICTED: high mobility group protein B1 [Otolemur garnettii]
Length = 289
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|444706988|gb|ELW48300.1| High mobility group protein B2 [Tupaia chinensis]
Length = 154
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
E R + K +HP S+ K GE W S DK PY KA K K +Y+KD+ Y+
Sbjct: 94 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYKKDIAAYH 151
>gi|32527711|gb|AAP86257.1| Ac2-008 [Rattus norvegicus]
Length = 234
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE++KK HP + + + K E+WK+MS +K + A+ K YE++MK Y
Sbjct: 148 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 207
Query: 60 RRQAEGTK----PEEEEESEKSM 78
+ E K P +EE S M
Sbjct: 208 PPKGETKKKFKDPCQEETSPIRM 230
>gi|46394418|gb|AAS91553.1| AmphiHMG1/2 [Branchiostoma belcheri tsingtauense]
Length = 222
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
R + + HP + V + K G++WK +S++DKA Y KA+ K Y+K++ Y R
Sbjct: 113 RPKVRAAHP-DFQVGDIAKILGKQWKEISDSDKAKYEKKAQTEKARYQKELAEYKR 167
>gi|345787347|ref|XP_854847.2| PREDICTED: LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E
member 1-related [Canis lupus familiaris]
Length = 362
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E REQ + HP + + K G +W + A+K Y+ +AE+ K +Y K+++ Y +
Sbjct: 81 LNERREQIRTRHP-DLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQ 139
Query: 61 RQA 63
+A
Sbjct: 140 SEA 142
>gi|440800724|gb|ELR21759.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 128
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R + K+D+P + + K KWK MSE +K PY+ A+K K YEK+M Y
Sbjct: 47 RVKVKEDNP-DLGFGDITKQVSAKWKDMSEEEKEPYLTLAKKDKERYEKEMSKY 99
>gi|312070764|ref|XP_003138297.1| HMG box family protein [Loa loa]
gi|307766542|gb|EFO25776.1| HMG box family protein [Loa loa]
Length = 526
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54
A + K G +W+ +S+ +KAPY+A+AE+ +V + K+
Sbjct: 131 AEISKRLGLQWRQLSDTEKAPYIAEAERLRVMHMKE 166
>gi|351698366|gb|EHB01285.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 211
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + + K Y+++MKNY
Sbjct: 20 VQNCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMPKSYKTRYDREMKNY 78
>gi|354496426|ref|XP_003510327.1| PREDICTED: transcription factor SOX-10 [Cricetulus griseus]
gi|344238232|gb|EGV94335.1| Transcription factor SOX-10 [Cricetulus griseus]
Length = 466
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
A + K GE W+ ++E+DK P++ +AE+ +++++KD +Y
Sbjct: 132 AELSKTLGELWRLLNESDKRPFIEEAERLRMQHKKDHPDY 171
>gi|332025497|gb|EGI65660.1| High mobility group protein DSP1 [Acromyrmex echinatior]
Length = 305
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ R+++KK HP+ K V K +WK+MS+ +K + AEK K Y+ +M+NY
Sbjct: 122 VQTCRQEHKKKHPEEKIVFREFSKKCAMRWKTMSDIEKKRFHEMAEKDKKRYDTEMQNYT 181
>gi|126274287|ref|XP_001387507.1| Nonhistone chromosomal protein 6A [Scheffersomyces stipitis CBS
6054]
gi|126213377|gb|EAZ63484.1| Nonhistone chromosomal protein 6A, partial [Scheffersomyces
stipitis CBS 6054]
Length = 85
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
S VGK GEKWK+++ +K PY KAE K YEK+ Y
Sbjct: 44 SFGQVGKLLGEKWKALTGEEKGPYENKAEADKKRYEKEKAEY 85
>gi|444729655|gb|ELW70064.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+ + K++HP + S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 108 EYHPKIKEEHP-DLSIGDVAKILGEMWNNTAADDKQPY-EKAAKLKEKYEKDIAAY 161
>gi|225195621|gb|ACN82088.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + K E+WK+MS +K + A+ K YE++MKNY
Sbjct: 8 VQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNY 66
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K++ P S+ V K GE W S +K PY KA + K +YEKD+ Y
Sbjct: 96 EFRPKVKEETP-GLSIGDVAKKLGEMWNKTSSEEKQPYEKKAARLKEKYEKDITAY 150
>gi|213405987|ref|XP_002173765.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
gi|212001812|gb|EEB07472.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
Length = 316
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 13 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
P S+ K GE WKS+S+ KAP++ A R+ +Y
Sbjct: 184 PAVYSITEFSKKAGEVWKSLSDDIKAPFIEDAATRRAQY 222
>gi|313224463|emb|CBY20253.1| unnamed protein product [Oikopleura dioica]
Length = 671
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 53
RE K+D+P K V V K GE+W+ ++ DKA Y KA K K YE+
Sbjct: 567 RENIKRDNPGIK-VTEVSKIAGERWREINANDKAKYEEKALKDKERYER 614
>gi|312378819|gb|EFR25283.1| hypothetical protein AND_09522 [Anopheles darlingi]
Length = 527
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP+ + + A + E+WK+M + +K + AEK K YE +M++Y
Sbjct: 281 VQTCREEHKKKHPEEQVIFAEFSRKCAERWKTMLDKEKQRFHEMAEKDKQRYELEMQSY 339
>gi|308498523|ref|XP_003111448.1| hypothetical protein CRE_03995 [Caenorhabditis remanei]
gi|308240996|gb|EFO84948.1| hypothetical protein CRE_03995 [Caenorhabditis remanei]
Length = 702
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+VA V K GG KWK M DK + KA K K YE +MK Y
Sbjct: 583 TVADVAKKGGAKWKEMGSDDKKEWEEKAAKDKARYEAEMKEY 624
>gi|410955200|ref|XP_003984245.1| PREDICTED: high mobility group protein B2-like [Felis catus]
Length = 329
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 57
++ RE++KK HP + + A K E+WK+MSE +K+ + A+ K Y+++MKN
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSEKEKSKFEDMAKSDKARYDREMKN 77
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP + + K GE W S DK PY KA K K +Y KD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLPIGDIAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYGKDIAAY 162
>gi|198469582|ref|XP_001355062.2| GA11488 [Drosophila pseudoobscura pseudoobscura]
gi|198146939|gb|EAL32118.2| GA11488 [Drosophila pseudoobscura pseudoobscura]
Length = 393
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + A + E+WK+M + +K + AEK K YE +M+NY
Sbjct: 189 VQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 247
>gi|405975742|gb|EKC40290.1| High mobility group protein DSP1 [Crassostrea gigas]
Length = 201
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ RE++KK P +N A K +KWK MS +K + AE+ K YEKDM NY+
Sbjct: 19 VQTCREEHKKKCPDENVVFAEFTKKCAQKWKEMSAKEKRRFEEMAERDKSRYEKDMANYD 78
>gi|225704132|gb|ACO07912.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ R ++KK HP + + A K E+WK MS +K + A++ KV YE +MKNY
Sbjct: 19 VQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFEDMAKQDKVRYEGEMKNY 77
>gi|384487819|gb|EIE79999.1| hypothetical protein RO3G_04704 [Rhizopus delemar RA 99-880]
Length = 99
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
RE+ K++P+ K +GK G KWK M+E +K P+V KAE K YE
Sbjct: 45 REKVIKENPEAK-FGEIGKILGAKWKEMTEEEKKPFVEKAEADKKRYE 91
>gi|195148932|ref|XP_002015416.1| GL11071 [Drosophila persimilis]
gi|198455718|ref|XP_001357531.2| GA18454 [Drosophila pseudoobscura pseudoobscura]
gi|221222504|sp|Q293F6.2|SSRP1_DROPS RecName: Full=FACT complex subunit Ssrp1; AltName: Full=Facilitates
chromatin transcription complex subunit Ssrp1; AltName:
Full=Recombination signal sequence recognition protein;
AltName: Full=Single-strand recognition protein
gi|194109263|gb|EDW31306.1| GL11071 [Drosophila persimilis]
gi|198135366|gb|EAL24655.2| GA18454 [Drosophila pseudoobscura pseudoobscura]
Length = 727
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ + RE K+++P K V + K GGE WK + DK+ + A K K+ Y+++M+NY
Sbjct: 567 LNDTRESIKRENPGIK-VTEIAKKGGEMWKELK--DKSKWEEAANKDKIRYQEEMRNY 621
>gi|424513152|emb|CCO66736.1| predicted protein [Bathycoccus prasinos]
Length = 486
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 13 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
PK A K G KW+ +SE D+ P+ AK EK K YE +MK +
Sbjct: 417 PKGTHPAETMKLLGRKWQRLSEEDRKPFEAKHEKDKARYEIEMKEW 462
>gi|167998110|ref|XP_001751761.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696859|gb|EDQ83196.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 356
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPY 40
NK V + K GE+WKSMS A +AP+
Sbjct: 215 NKPVTEIAKILGEEWKSMSPAKRAPF 240
>gi|327260386|ref|XP_003215015.1| PREDICTED: FACT complex subunit SSRP1-like [Anolis carolinensis]
Length = 705
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
R++ + + P SV V K GE WK+MS+ K + KAE K +YEK MK YN
Sbjct: 560 RDKIRSESP-GMSVTDVSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYN 613
>gi|320585897|gb|EFW98576.1| nucleosome-binding protein [Grosmannia clavigera kw1407]
Length = 94
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE + ++P S VGK GE+WK+++E + PY AKA K YE YN
Sbjct: 40 RENVRDENP-GISFGQVGKILGERWKALNEKQRTPYEAKAAADKKRYEDAKAAYN 93
>gi|28279681|gb|AAH45917.1| High-mobility group box 1 [Danio rerio]
gi|182891806|gb|AAI65307.1| Hmgb1 protein [Danio rerio]
Length = 205
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + K E+WK+MS +K + A+ K YE++MKNY
Sbjct: 19 VQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNY 77
>gi|42476233|ref|NP_955849.2| high mobility group protein B1 [Danio rerio]
gi|37681827|gb|AAQ97791.1| high-mobility group box 1 [Danio rerio]
gi|45595607|gb|AAH67193.1| High-mobility group box 1 [Danio rerio]
Length = 205
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + K E+WK+MS +K + A+ K YE++MKNY
Sbjct: 19 VQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNY 77
>gi|348541671|ref|XP_003458310.1| PREDICTED: high mobility group-T protein-like [Oreochromis
niloticus]
Length = 206
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
EFR + K + P S+ V K GE W S + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEFRPKVKGESP-GLSIGDVAKRLGEMWNSTAAEDKQPYEKKAAKLKEKYEKDIAAYRA 164
Query: 61 RQAEGT 66
+ G+
Sbjct: 165 KGKPGS 170
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K + A + K YE++M NY
Sbjct: 19 VQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSAKEKGKFEDMARQDKARYEREMMNY 77
>gi|401626897|gb|EJS44815.1| nhp6bp [Saccharomyces arboricola H-6]
Length = 99
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VG+ GE+WK+++ +K PY +KA+ K YE + + YN +A
Sbjct: 53 TFGQVGRILGERWKALTAEEKVPYESKAQADKKRYESEKELYNATRA 99
>gi|294887174|ref|XP_002771995.1| non-histone protein, putative [Perkinsus marinus ATCC 50983]
gi|239875898|gb|EER03811.1| non-histone protein, putative [Perkinsus marinus ATCC 50983]
Length = 61
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 1 MEEFREQYKKDH-PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 53
M++ R++ ++H ++K + + K GE WK+MS+ +KAPY A++ K YE+
Sbjct: 1 MQKNRQKIMEEHGLQSKDIGDIAKKMGEAWKAMSDTEKAPYTKLADEDKKRYER 54
>gi|392876068|gb|AFM86866.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + K E+WK+M+ DK + A+ KV Y ++M+NY
Sbjct: 24 REEHKKKHPDSSVDFSEFSKQCSERWKAMTPKDKGKFEDLAKNDKVRYGREMRNY 78
>gi|383858172|ref|XP_003704576.1| PREDICTED: high mobility group protein DSP1-like [Megachile
rotundata]
Length = 433
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ R++YKK HP+ K V K WK+MS+ +K + AEK K Y+ +M+NY
Sbjct: 254 VQTCRQEYKKKHPEEKIVFREFSKKCAMSWKTMSDKEKKRFHEMAEKDKKRYDAEMQNYT 313
Query: 60 RRQAE 64
+ E
Sbjct: 314 PPKGE 318
>gi|157832121|pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
gi|157832122|pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
Length = 81
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 16 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 72
>gi|391338878|ref|XP_003743782.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily E member 1-like
[Metaseiulus occidentalis]
Length = 366
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
VGK G+ WK + E K Y+ E+ K EY +++KNY+
Sbjct: 99 VGKLIGQMWKELPEESKQVYIDDYEQEKAEYNENLKNYH 137
>gi|55715624|gb|AAV59015.1| HMG-box transcription factor Sox9b [Danio rerio]
Length = 360
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY----NRRQAEGTKPEEEEES 74
A + K G+ W+ ++E +K P+V +AE+ +V+++KD +Y RR++ + E E+
Sbjct: 72 AELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKSGSAESEDG 131
Query: 75 EKSMSEVN 82
E++ N
Sbjct: 132 EQTQISTN 139
>gi|58268918|ref|XP_571615.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112618|ref|XP_774852.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818300|sp|P0CO25.1|NHP6_CRYNB RecName: Full=Non-histone chromosomal protein 6
gi|338818301|sp|P0CO24.1|NHP6_CRYNJ RecName: Full=Non-histone chromosomal protein 6
gi|50257500|gb|EAL20205.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227850|gb|AAW44308.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 116
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 44
++++RE+ K ++P+ + VGK G KW+ M+E +K PY AKA
Sbjct: 39 VQDYRERIKTENPE-ATFGDVGKLLGIKWREMNENEKKPYEAKA 81
>gi|349576469|dbj|GAA21640.1| K7_Nhp6bp [Saccharomyces cerevisiae Kyokai no. 7]
Length = 99
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
+ VG+ GEKWK+++ +K PY +KA+ K YE + + YN +A
Sbjct: 53 TFGQVGRILGEKWKALTAEEKQPYESKAQADKKRYESEKELYNATRA 99
>gi|90103305|gb|ABD85497.1| high mobility group box 1-like [Ictalurus punctatus]
Length = 182
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + + K E+WK+MS +K + A K YE++MKNY
Sbjct: 4 REEHKKKHPDTSVNFSEFSKKCSERWKTMSAKEKGKFEDMARLDKARYEREMKNY 58
>gi|449509245|ref|XP_004163534.1| PREDICTED: FACT complex subunit SSRP1-like, partial [Cucumis
sativus]
Length = 303
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
RE KK +P S +G+ G+KW MS +K PY +KA K Y++++ Y Q
Sbjct: 234 RENIKKSNP-GISFTELGRVLGDKWNKMSAEEKEPYESKARDDKKRYKEEISGYKNPQ 290
>gi|426236471|ref|XP_004012192.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 213
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGNVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|391333632|ref|XP_003741216.1| PREDICTED: transcription factor Sox-9-A-like [Metaseiulus
occidentalis]
Length = 233
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 11 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEE 70
DH KN A + K G+ WK +S+ +K P++ +A++ ++ ++K+ +Y + + EE
Sbjct: 67 DHHKNLHNAELSKTLGKLWKQLSQEEKRPFIEEADRLRILHKKEYPDYKYQPRRRIRKEE 126
Query: 71 EE 72
E
Sbjct: 127 EH 128
>gi|194910996|ref|XP_001982265.1| GG11142 [Drosophila erecta]
gi|190656903|gb|EDV54135.1| GG11142 [Drosophila erecta]
Length = 138
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE K +HP+ K + V GGE W++M + DK+ + A K EY++ M+ +N
Sbjct: 24 REHIKSEHPEFK-IQEVAVKGGELWRTMDDEDKSVWQESANKAMAEYKEKMEQWN 77
>gi|299472000|emb|CBN80083.1| high mobility group protein [Ectocarpus siliculosus]
Length = 242
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
E RE+ K P+ V V K KW+ +SE DK + AKA + K YE+++ Y+
Sbjct: 67 EAREEVKNALPEGSKVTEVMKGIAAKWRELSETDKEEWTAKAAQDKDRYEQELSVYD 123
>gi|148673911|gb|EDL05858.1| mCG144566 [Mus musculus]
Length = 240
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 131 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 187
>gi|62955511|ref|NP_001017769.1| high mobility group protein B3 [Danio rerio]
gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio]
gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio]
Length = 198
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ V K G W ++S+++K P+++ A+K K +Y+KDM Y
Sbjct: 121 IGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFY 161
>gi|351698285|gb|EHB01204.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 215
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDITAY 162
>gi|290998589|ref|XP_002681863.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
gi|284095488|gb|EFC49119.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
Length = 219
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 51
V V K G WK MS+ K PY+A+AEK K Y
Sbjct: 146 VTEVAKKVGALWKKMSDEQKKPYIAQAEKLKAAY 179
>gi|259013518|ref|NP_001158501.1| sox11-like protein [Saccoglossus kowalevskii]
gi|197734711|gb|ACH73251.1| sox11-like protein [Saccoglossus kowalevskii]
Length = 339
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY---NRR 61
R + + HP + A + K G++WK + E +K PYV +AE+ ++ + ++ +Y R+
Sbjct: 76 RRKISEHHPDMHN-AEISKRLGKRWKMLIEDEKHPYVEEAERLRLLHMQEYPDYKYRPRK 134
Query: 62 QAEGTKPE 69
+A+ +KPE
Sbjct: 135 KAKPSKPE 142
>gi|193787044|dbj|BAG51867.1| unnamed protein product [Homo sapiens]
Length = 176
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 69 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 123
>gi|157831385|pdb|1HSM|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
gi|157831386|pdb|1HSN|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
Length = 79
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 14 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 70
>gi|357492685|ref|XP_003616631.1| FACT complex subunit SSRP1 [Medicago truncatula]
gi|355517966|gb|AES99589.1| FACT complex subunit SSRP1 [Medicago truncatula]
Length = 648
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE KK +P S V K GE WK MS +K PY AKA K YE + YN
Sbjct: 578 RENIKKANP-GISFTDVAKLLGENWKKMSAEEKEPYEAKARVDKKRYEDEKIVYN 631
>gi|321461212|gb|EFX72246.1| hypothetical protein DAPPUDRAFT_201206 [Daphnia pulex]
Length = 759
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
REQ KKD+P SV + K GGE W+ + D++ + AKA+ K Y+K MK Y
Sbjct: 598 REQIKKDNP-GISVTDLMKKGGEMWQKVE--DRSIWEAKAKVAKEAYDKAMKEYT 649
>gi|195382097|ref|XP_002049768.1| GJ21774 [Drosophila virilis]
gi|194144565|gb|EDW60961.1| GJ21774 [Drosophila virilis]
Length = 729
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ + REQ K+D+P K V + K GGE WK + DK+ + A K + Y+ +M+NY
Sbjct: 570 LNDTREQIKRDNPGIK-VTEIAKKGGEMWKELK--DKSKWEEIAAKDRQRYQDEMRNY 624
>gi|389626627|ref|XP_003710967.1| non-histone chromosomal protein 6 [Magnaporthe oryzae 70-15]
gi|78192124|gb|ABB30152.1| nonhistone protein 6 [Magnaporthe grisea]
gi|291195731|gb|ADD84582.1| nonhistone chromosomal protein 6B [Magnaporthe oryzae]
gi|351650496|gb|EHA58355.1| non-histone chromosomal protein 6 [Magnaporthe oryzae 70-15]
gi|440463464|gb|ELQ33044.1| nucleosome binding protein [Magnaporthe oryzae Y34]
gi|440481294|gb|ELQ61893.1| nucleosome binding protein [Magnaporthe oryzae P131]
Length = 101
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52
+ VGK GE+WK++S+ +APY AKA K YE
Sbjct: 50 TFGQVGKILGERWKALSDKQRAPYDAKAAADKKRYE 85
>gi|194752689|ref|XP_001958652.1| GF12460 [Drosophila ananassae]
gi|190619950|gb|EDV35474.1| GF12460 [Drosophila ananassae]
Length = 728
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ + RE+ KK++P K V + K GGE WK + DK+ + A K K+ Y+++M+NY
Sbjct: 566 LNDTREKIKKENPGIK-VTEIAKKGGEMWKELK--DKSKWEEAAAKDKLRYQEEMRNY 620
>gi|126327421|ref|XP_001367294.1| PREDICTED: high mobility group protein B1-like isoform 2
[Monodelphis domestica]
Length = 216
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKVRYEREMKTY 78
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|170097113|ref|XP_001879776.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645179|gb|EDR09427.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 114
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY--N 59
+++R++ K ++P + VGK G KWK + E +K PYV +A K K E+ Y N
Sbjct: 43 QDWRDRIKAENP-DAGFGEVGKLLGAKWKELDEEEKKPYVEQASKDKTRAEEAKAAYDSN 101
Query: 60 RRQAEGTKPEEEE 72
++ A G + E+EE
Sbjct: 102 KKSASGDEEEDEE 114
>gi|123975195|ref|XP_001330235.1| HMG box family protein [Trichomonas vaginalis G3]
gi|121896229|gb|EAY01387.1| HMG box family protein [Trichomonas vaginalis G3]
Length = 95
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54
R Q K D+P + + K GE WK++SE +K PYV AEK K E KD
Sbjct: 14 RPQVKADNP-GIAFGDIAKKLGEMWKNLSEEEKKPYVEMAEKEK-ELHKD 61
>gi|169610541|ref|XP_001798689.1| hypothetical protein SNOG_08374 [Phaeosphaeria nodorum SN15]
gi|160702095|gb|EAT84650.2| hypothetical protein SNOG_08374 [Phaeosphaeria nodorum SN15]
Length = 106
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R++ ++D+P K VGK GEKWK+++E + PY AKA K YE++ Y
Sbjct: 43 RDKVREDNPGIK-FGEVGKMLGEKWKALNEKQRTPYEAKAAADKKRYEEEKAAY 95
>gi|444705868|gb|ELW47253.1| High mobility group protein B1 [Tupaia chinensis]
Length = 182
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
R+++KK HP + + + K G E+WK+MS K + +A+ K YE++MK Y
Sbjct: 12 RKEHKKKHPDASVNFSEFSKKGSERWKTMSAKQKGKFEDRAKVDKARYEREMKTY 66
>gi|159162414|pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
gi|159162415|pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 18 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 74
>gi|3342573|gb|AAC27651.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|444723820|gb|ELW64450.1| MKL/myocardin-like protein 1 [Tupaia chinensis]
Length = 1207
Score = 35.0 bits (79), Expect = 6.5, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY---NRRQ 62
E++KK+ + +++ K E+WK+ S + + A+ KV YE++MK Y N
Sbjct: 13 EEHKKNLDASVNLSEFSKKCSERWKTKSAKENGKFEDMAKADKVHYEREMKTYIPPNGET 72
Query: 63 AEGTKPEEEEESEKSM--SEVNDEDDDEEGSGEEDDD 97
TK + + S + S + D G+GE DDD
Sbjct: 73 VATTKAKVDFSSVVCLPPSVIAVNGLDGGGAGENDDD 109
>gi|392878936|gb|AFM88300.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEE 72
S+ + K GEKW +M +K PY +A+K K +Y+KD+ Y + TKP+ E
Sbjct: 137 SIGDIAKKLGEKWNAMGSEEKLPYEQQADKLKEKYKKDVAAYRAK----TKPDSVE 188
>gi|307191141|gb|EFN74839.1| High mobility group protein DSP1 [Camponotus floridanus]
Length = 305
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
++ R+++KK HP+ K V K +WK+MS+ +K + AEK K Y+ +M+NY
Sbjct: 123 VQTCRQEHKKKHPEEKIVFREFSKKCAMRWKTMSDIEKKRFHEMAEKDKKRYDAEMQNYT 182
>gi|395859165|ref|XP_003801914.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 220
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE+YKK HP + S + K E+WK+MS K A+ K YE++MK Y
Sbjct: 41 VQTCREEYKKKHPDASVSFSEFSKKCSERWKTMSPKKKGKCEDMAKADKACYEREMKTY 99
>gi|109469394|ref|XP_001076232.1| PREDICTED: high mobility group protein B1-like [Rattus
norvegicus]
gi|392338825|ref|XP_003753645.1| PREDICTED: high mobility group protein B1-like [Rattus
norvegicus]
Length = 214
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + V K E+WK+MS +K + A+ K YE++MK Y
Sbjct: 20 VQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 78
>gi|355705177|gb|EHH31102.1| hypothetical protein EGK_20957, partial [Macaca mulatta]
Length = 185
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 12 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
HPK KS G + G+ K + E +K PY+ K K K EYEKD+ Y
Sbjct: 108 HPKIKSTNP-GISIGDVKKKLGEIEKQPYIIKVAKLKEEYEKDVAEY 153
>gi|449676214|ref|XP_002161760.2| PREDICTED: uncharacterized protein LOC100204080 [Hydra
magnipapillata]
Length = 325
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+ E RE+++ ++P + V K G+KW S+ +++K Y+ +AEK K +Y K ++ Y +
Sbjct: 64 LNEHREKFRIENP-DMPFHEVTKILGQKWSSLDQSEKQQYLYEAEKDKEKYMKALQGYQQ 122
Query: 61 RQA 63
A
Sbjct: 123 SSA 125
>gi|157820087|ref|NP_001102843.1| high mobility group box 1 like [Rattus norvegicus]
gi|149043247|gb|EDL96779.1| rCG50935 [Rattus norvegicus]
Length = 214
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIPAY 162
>gi|5764680|gb|AAC27653.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|300677968|gb|ADK27291.1| high-mobility-group B1b [Gekko japonicus]
Length = 215
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|478813|pir||S29857 nonhistone chromosomal protein HMG-1 - human
gi|184251|gb|AAA64970.1| HMG-1 [Homo sapiens]
Length = 216
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|405121060|gb|AFR95829.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 116
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 44
++++RE+ K ++P+ + VGK G KW+ M+E +K PY AKA
Sbjct: 39 VQDYRERIKAENPE-ATFGDVGKLLGIKWREMNENEKKPYEAKA 81
>gi|119584724|gb|EAW64320.1| hCG26831 [Homo sapiens]
Length = 212
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|444729709|gb|ELW70116.1| High mobility group protein B1 [Tupaia chinensis]
Length = 215
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|387914026|gb|AFK10622.1| high mobility group box 3 [Callorhinchus milii]
Length = 210
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ V K GE W ++ +K PY AKA K K +YEKD+ +Y
Sbjct: 126 TIGDVAKKLGELWNGCTDEEKKPYNAKAAKLKEKYEKDVADY 167
>gi|123368|sp|P07156.1|HMGB1_CRIGR RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|49483|emb|CAA68441.1| high mobility group protein [Cricetulus griseus]
Length = 180
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 71 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 127
>gi|387914724|gb|AFK10971.1| high mobility group box 1 [Callorhinchus milii]
Length = 226
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
S+ + K GEKW +M +K PY +A+K K +Y+KD+ Y
Sbjct: 137 SIGDIAKKLGEKWNAMGSEEKLPYEQQADKLKEKYKKDVAAY 178
>gi|195123269|ref|XP_002006130.1| GI20867 [Drosophila mojavensis]
gi|193911198|gb|EDW10065.1| GI20867 [Drosophila mojavensis]
Length = 111
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KK++P +K V + K GGE W+ + DK + KA K K +Y K +K Y
Sbjct: 17 LNENREQIKKENPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKMKEDYNKAVKEY 71
>gi|148226156|ref|NP_001084164.1| FACT complex subunit SSRP1 [Xenopus laevis]
gi|82175412|sp|Q9W602.1|SSRP1_XENLA RecName: Full=FACT complex subunit SSRP1; AltName: Full=DNA
unwinding factor 87 kDa subunit; Short=DUF87; AltName:
Full=Facilitates chromatin transcription complex subunit
ssrp1; AltName: Full=Structure-specific recognition
protein 1
gi|4586285|dbj|BAA76333.1| DUF87 [Xenopus laevis]
Length = 693
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K ++P S+ + K GE WK+MS K + +AE+ K +YEK MK YN
Sbjct: 556 REKIKSENP-GISITDLSKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKAMKEYN 609
>gi|296224352|ref|XP_002758030.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390474708|ref|XP_003734829.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 215
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|195381983|ref|XP_002049712.1| GJ20604 [Drosophila virilis]
gi|194144509|gb|EDW60905.1| GJ20604 [Drosophila virilis]
Length = 111
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KK++P +K V + K GGE W+ + DK + KA K K +Y K +K Y
Sbjct: 17 LNENREQIKKENPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKMKEDYNKAVKEY 71
>gi|109098276|ref|XP_001102554.1| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 215
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|148682766|gb|EDL14713.1| mCG116825 [Mus musculus]
Length = 162
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 59 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 113
>gi|148709727|gb|EDL41673.1| mCG9102 [Mus musculus]
Length = 215
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|600761|gb|AAA57042.1| high mobility group 1 protein [Mus musculus]
Length = 215
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|392877702|gb|AFM87683.1| high mobility group box 3 [Callorhinchus milii]
Length = 203
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ V K GE W ++ +K PY AKA K K +YEKD+ +Y
Sbjct: 119 TIGDVAKKLGELWNGCTDEEKKPYNAKAAKLKEKYEKDVADY 160
>gi|291410693|ref|XP_002721624.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 215
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|26350077|dbj|BAC38678.1| unnamed protein product [Mus musculus]
Length = 181
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|83014391|ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|392884154|gb|AFM90909.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
S+ + K GEKW +M +K PY +A+K K +Y+KD+ Y
Sbjct: 137 SIGDIAKKLGEKWNAMGSEEKLPYEQQADKLKEKYKKDVAAY 178
>gi|395520861|ref|XP_003764541.1| PREDICTED: high mobility group protein B1 [Sarcophilus harrisii]
Length = 230
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + + K E+WK+MS +K + A+ KV YE++MK Y
Sbjct: 34 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKVRYEREMKTY 92
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 122 EYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 176
>gi|167744990|pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 113 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 169
>gi|74181373|dbj|BAE29962.1| unnamed protein product [Mus musculus]
Length = 215
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|403267260|ref|XP_003925762.1| PREDICTED: uncharacterized protein LOC101050525 [Saimiri
boliviensis boliviensis]
Length = 645
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 REQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
RE++KK +P+ + A K E+WK+MS +K+ + + KV Y+++M
Sbjct: 180 REEHKKKNPEVPVNFAEFSKKCSERWKTMSRKEKSTFDEMTKVDKVRYDQEM 231
Score = 34.7 bits (78), Expect = 8.2, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
EFR + K +P S+ V K GE+ ++S++ K P + KA K K E+D Y +
Sbjct: 259 EFRPKIKSTNP-GISIGDVAKRLGERRNNLSDSGKQPSITKAAKLKERNEEDGAEYKSK 316
>gi|332863449|ref|XP_001169802.2| PREDICTED: high mobility group protein B1-like, partial [Pan
troglodytes]
Length = 174
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|301757910|ref|XP_002914802.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 215
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|190195542|gb|ACE73639.1| high-mobility group box 1 (predicted) [Sorex araneus]
Length = 215
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|149635755|ref|XP_001508702.1| PREDICTED: high mobility group protein B1-like [Ornithorhynchus
anatinus]
Length = 215
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|417397281|gb|JAA45674.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 216
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 107 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 163
>gi|410057418|ref|XP_003954213.1| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 210
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP SV V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSVGDVAKKLGEMWNNAAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|26342222|dbj|BAC34773.1| unnamed protein product [Mus musculus]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|444707034|gb|ELW48343.1| High mobility group protein B1 [Tupaia chinensis]
Length = 203
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 94 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 150
>gi|432102789|gb|ELK30264.1| High mobility group protein B1 [Myotis davidii]
Length = 245
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|431920962|gb|ELK18731.1| High mobility group protein B1 [Pteropus alecto]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|55639639|ref|XP_509611.1| PREDICTED: high mobility group protein B1 isoform 15 [Pan
troglodytes]
gi|114649261|ref|XP_001140156.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan
troglodytes]
gi|114649265|ref|XP_001140328.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan
troglodytes]
gi|114649269|ref|XP_001140491.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan
troglodytes]
gi|332841128|ref|XP_003314147.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|332841133|ref|XP_003314149.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|397513185|ref|XP_003826902.1| PREDICTED: high mobility group protein B1 isoform 1 [Pan paniscus]
gi|397513187|ref|XP_003826903.1| PREDICTED: high mobility group protein B1 isoform 2 [Pan paniscus]
gi|397513189|ref|XP_003826904.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan paniscus]
gi|397513191|ref|XP_003826905.1| PREDICTED: high mobility group protein B1 isoform 4 [Pan paniscus]
gi|397513193|ref|XP_003826906.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan paniscus]
gi|397513195|ref|XP_003826907.1| PREDICTED: high mobility group protein B1 isoform 6 [Pan paniscus]
gi|397513197|ref|XP_003826908.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan paniscus]
gi|410047671|ref|XP_003952424.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047673|ref|XP_003952425.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047675|ref|XP_003952426.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047677|ref|XP_003952427.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047679|ref|XP_003952428.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047682|ref|XP_003952429.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047686|ref|XP_003952430.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047688|ref|XP_003952431.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|48145843|emb|CAG33144.1| HMGB1 [Homo sapiens]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|620098|emb|CAA56631.1| high mobility group protein [Mus musculus]
gi|71681313|gb|AAI00313.1| High mobility group box 1 [Mus musculus]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|4504425|ref|NP_002119.1| high mobility group protein B1 [Homo sapiens]
gi|50950133|ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris]
gi|126352708|ref|NP_001075304.1| high mobility group protein B1 [Equus caballus]
gi|281182655|ref|NP_001162380.1| high mobility group protein B1 [Papio anubis]
gi|284005385|ref|NP_001164752.1| high mobility group protein B1 [Oryctolagus cuniculus]
gi|388453289|ref|NP_001252735.1| high mobility group protein B1 [Macaca mulatta]
gi|291397530|ref|XP_002715999.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|291399645|ref|XP_002716268.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|296203653|ref|XP_002748994.1| PREDICTED: high mobility group protein B1 isoform 2 [Callithrix
jacchus]
gi|297714815|ref|XP_002833818.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
gi|332242218|ref|XP_003270282.1| PREDICTED: high mobility group protein B1-like isoform 1 [Nomascus
leucogenys]
gi|332242222|ref|XP_003270284.1| PREDICTED: high mobility group protein B1-like isoform 3 [Nomascus
leucogenys]
gi|332242226|ref|XP_003270286.1| PREDICTED: high mobility group protein B1-like isoform 5 [Nomascus
leucogenys]
gi|332242228|ref|XP_003270287.1| PREDICTED: high mobility group protein B1-like isoform 6 [Nomascus
leucogenys]
gi|332242230|ref|XP_003270288.1| PREDICTED: high mobility group protein B1-like isoform 7 [Nomascus
leucogenys]
gi|332242232|ref|XP_003270289.1| PREDICTED: high mobility group protein B1-like isoform 8 [Nomascus
leucogenys]
gi|344284506|ref|XP_003414007.1| PREDICTED: high mobility group protein B1-like [Loxodonta africana]
gi|348583405|ref|XP_003477463.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
gi|426375079|ref|XP_004054375.1| PREDICTED: high mobility group protein B1-like isoform 1 [Gorilla
gorilla gorilla]
gi|426375081|ref|XP_004054376.1| PREDICTED: high mobility group protein B1-like isoform 2 [Gorilla
gorilla gorilla]
gi|426375083|ref|XP_004054377.1| PREDICTED: high mobility group protein B1-like isoform 3 [Gorilla
gorilla gorilla]
gi|426375085|ref|XP_004054378.1| PREDICTED: high mobility group protein B1-like isoform 4 [Gorilla
gorilla gorilla]
gi|426375087|ref|XP_004054379.1| PREDICTED: high mobility group protein B1-like isoform 5 [Gorilla
gorilla gorilla]
gi|426375089|ref|XP_004054380.1| PREDICTED: high mobility group protein B1-like isoform 6 [Gorilla
gorilla gorilla]
gi|426375091|ref|XP_004054381.1| PREDICTED: high mobility group protein B1-like isoform 7 [Gorilla
gorilla gorilla]
gi|426375093|ref|XP_004054382.1| PREDICTED: high mobility group protein B1-like isoform 8 [Gorilla
gorilla gorilla]
gi|441624073|ref|XP_004088962.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624077|ref|XP_004088963.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624084|ref|XP_004088964.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624090|ref|XP_004088965.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624094|ref|XP_004088966.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|123369|sp|P09429.3|HMGB1_HUMAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|61213476|sp|Q6YKA4.3|HMGB1_CANFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|75076928|sp|Q4R844.3|HMGB1_MACFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|119370722|sp|Q08IE6.3|HMGB1_HORSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028296|sp|B0CM99.1|HMGB1_CALJA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028297|sp|B1MTB0.1|HMGB1_CALMO RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028298|sp|A9RA84.1|HMGB1_PAPAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|32327|emb|CAA31110.1| unnamed protein product [Homo sapiens]
gi|1435197|gb|AAB08987.1| non-histone chromatin protein HMG1 [Homo sapiens]
gi|13097234|gb|AAH03378.1| High-mobility group box 1 [Homo sapiens]
gi|21410205|gb|AAH30981.1| High-mobility group box 1 [Homo sapiens]
gi|30582719|gb|AAP35586.1| high-mobility group box 1 [Homo sapiens]
gi|37380997|gb|AAQ91389.1| high mobility group protein 1 [Homo sapiens]
gi|37548602|gb|AAN11296.1| high mobility group protein B1 [Canis lupus familiaris]
gi|37722533|gb|AAN11319.1| high mobility group B1 protein [Canis lupus familiaris]
gi|44890726|gb|AAH66889.1| High-mobility group box 1 [Homo sapiens]
gi|45709178|gb|AAH67732.1| High-mobility group box 1 [Homo sapiens]
gi|51476884|emb|CAH18408.1| hypothetical protein [Homo sapiens]
gi|54697178|gb|AAV38961.1| high-mobility group box 1 [Homo sapiens]
gi|60654989|gb|AAX32058.1| high mobility group box 1 [synthetic construct]
gi|61357252|gb|AAX41359.1| high-mobility group box 1 [synthetic construct]
gi|67968740|dbj|BAE00728.1| unnamed protein product [Macaca fascicularis]
gi|115354285|dbj|BAF33339.1| high-mobility group box 1 [Equus caballus]
gi|119628862|gb|EAX08457.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628864|gb|EAX08459.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628865|gb|EAX08460.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628866|gb|EAX08461.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628867|gb|EAX08462.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|121073803|gb|ABM47301.1| high mobility group box 1 protein [Homo sapiens]
gi|152112978|gb|ABS29271.1| high-mobility group box 1 [Homo sapiens]
gi|158256420|dbj|BAF84183.1| unnamed protein product [Homo sapiens]
gi|162415900|gb|ABX89266.1| high-mobility group box 1 (predicted) [Papio anubis]
gi|165934066|gb|ABY74560.1| high-mobility group box 1 (predicted) [Callithrix jacchus]
gi|169402702|gb|ACA53510.1| high-mobility group box 1 (predicted) [Callicebus moloch]
gi|183396417|gb|ACC62098.1| high-mobility group box 1 (predicted) [Rhinolophus ferrumequinum]
gi|193783763|dbj|BAG53745.1| unnamed protein product [Homo sapiens]
gi|196050399|gb|ACG64310.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
gi|216397586|gb|ACJ72830.1| high-mobility group box 1 (predicted) [Oryctolagus cuniculus]
gi|261858262|dbj|BAI45653.1| high-mobility group box 1 [synthetic construct]
gi|335775462|gb|AEH58580.1| high mobility group protein B1-like protein [Equus caballus]
gi|351700460|gb|EHB03379.1| High mobility group protein B1 [Heterocephalus glaber]
gi|387542840|gb|AFJ72047.1| high mobility group protein B1 [Macaca mulatta]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|402854944|ref|XP_003892110.1| PREDICTED: high mobility group protein B1-like isoform 1 [Papio
anubis]
gi|402854946|ref|XP_003892111.1| PREDICTED: high mobility group protein B1-like isoform 2 [Papio
anubis]
Length = 214
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|397495503|ref|XP_003818592.1| PREDICTED: high mobility group protein B1-like [Pan paniscus]
Length = 209
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|348551709|ref|XP_003461672.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
Length = 214
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|149030113|gb|EDL85190.1| rCG63106 [Rattus norvegicus]
Length = 201
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 94 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 150
>gi|109510563|ref|XP_001059688.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343404|ref|XP_003754879.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|40352857|gb|AAH64790.1| Hmgb1 protein [Mus musculus]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|41386729|ref|NP_788785.1| high mobility group protein B1 [Bos taurus]
gi|410947173|ref|XP_003980327.1| PREDICTED: high mobility group protein B1 [Felis catus]
gi|123367|sp|P10103.3|HMGB1_BOVIN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|417|emb|CAA31284.1| unnamed protein product [Bos taurus]
gi|73586656|gb|AAI02930.1| HMGB1 protein [Bos taurus]
gi|146231904|gb|ABQ13027.1| high-mobility group box 1 [Bos taurus]
gi|296481787|tpg|DAA23902.1| TPA: high mobility group protein B1 [Bos taurus]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|6754208|ref|NP_034569.1| high mobility group protein B1 [Mus musculus]
gi|6981026|ref|NP_037095.1| high mobility group protein B1 [Rattus norvegicus]
gi|407262920|ref|XP_003945388.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
gi|52783618|sp|P63159.2|HMGB1_RAT RecName: Full=High mobility group protein B1; AltName:
Full=Amphoterin; AltName: Full=Heparin-binding protein
p30; AltName: Full=High mobility group protein 1;
Short=HMG-1
gi|52783747|sp|P63158.2|HMGB1_MOUSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|9082303|gb|AAF82799.1|AF275734_1 amphoterin [Rattus norvegicus]
gi|53382|emb|CAA78042.1| non-histone chromosomal high-mobility group 1 protein [Mus
musculus]
gi|56365|emb|CAA68526.1| unnamed protein product [Rattus norvegicus]
gi|202885|gb|AAA40729.1| Amphoterin [Rattus norvegicus]
gi|208488|gb|AAA73006.1| high mobility group 1 protein [synthetic construct]
gi|437102|gb|AAA20508.1| HMG-1 [Mus musculus]
gi|13879238|gb|AAH06586.1| High mobility group box 1 [Mus musculus]
gi|14250281|gb|AAH08565.1| High mobility group box 1 [Mus musculus]
gi|26332344|dbj|BAC29902.1| unnamed protein product [Mus musculus]
gi|26351305|dbj|BAC39289.1| unnamed protein product [Mus musculus]
gi|38512146|gb|AAH61779.1| High mobility group box 1 [Rattus norvegicus]
gi|51859468|gb|AAH81839.1| High mobility group box 1 [Rattus norvegicus]
gi|52789475|gb|AAH83067.1| High mobility group box 1 [Mus musculus]
gi|54648288|gb|AAH85090.1| High mobility group box 1 [Mus musculus]
gi|56788766|gb|AAH88402.1| High mobility group box 1 [Rattus norvegicus]
gi|61403558|gb|AAH91741.1| High mobility group box 1 [Mus musculus]
gi|62739258|gb|AAH94030.1| High mobility group box 1 [Mus musculus]
gi|74186113|dbj|BAE34226.1| unnamed protein product [Mus musculus]
gi|84040262|gb|AAI10668.1| Hmgb1 protein [Mus musculus]
gi|84105496|gb|AAI11469.1| High mobility group box 1 [Mus musculus]
gi|149034811|gb|EDL89531.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034812|gb|EDL89532.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034813|gb|EDL89533.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|195539712|gb|AAI68143.1| High mobility group box 1 [Rattus norvegicus]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|51592117|ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa]
gi|123371|sp|P12682.3|HMGB1_PIG RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|164490|gb|AAA31050.1| non-histone protein HMG1 [Sus scrofa]
Length = 215
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAY 162
>gi|30584163|gb|AAP36330.1| Homo sapiens high-mobility group box 1 [synthetic construct]
gi|54697182|gb|AAV38963.1| high-mobility group box 1 [synthetic construct]
gi|54697184|gb|AAV38964.1| high-mobility group box 1 [synthetic construct]
gi|61367269|gb|AAX42974.1| high-mobility group box 1 [synthetic construct]
gi|61367275|gb|AAX42975.1| high-mobility group box 1 [synthetic construct]
gi|61371572|gb|AAX43692.1| high-mobility group box 1 [synthetic construct]
Length = 216
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|444729656|gb|ELW70065.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+ + K++HP + S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 108 EYHPKIKEEHP-DLSIGDVAKKLGEMWNNTAADDKQPY-EKAAKLKEKYEKDIAAY 161
>gi|3342575|gb|AAC27652.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|5764678|gb|AAC27650.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E+R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
>gi|50513251|pdb|1J3X|A Chain A, Solution Structure Of The N-Terminal Domain Of The Hmgb2
Length = 77
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 57
RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKN
Sbjct: 24 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKN 77
>gi|392876654|gb|AFM87159.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
S+ + K GEKW +M +K PY +A+K K +Y+KD+ Y
Sbjct: 137 SIGDIAKKLGEKWNAMGSEEKLPYEQQADKLKEKYKKDVAAY 178
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.295 0.118 0.313
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,687,111,121
Number of Sequences: 23463169
Number of extensions: 65370795
Number of successful extensions: 1410422
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10677
Number of HSP's successfully gapped in prelim test: 8684
Number of HSP's that attempted gapping in prelim test: 1089893
Number of HSP's gapped (non-prelim): 192994
length of query: 98
length of database: 8,064,228,071
effective HSP length: 67
effective length of query: 31
effective length of database: 6,492,195,748
effective search space: 201258068188
effective search space used: 201258068188
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 69 (31.2 bits)