BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034314
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 75/82 (91%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR YK++HPKNKSVAAVGKAGGEKWKS+S+++KAPYVAKA+KRKVEYEK+MK YN+
Sbjct: 46 MEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNK 105
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG P+E+EES+KS+SEVN
Sbjct: 106 KLEEG--PKEDEESDKSVSEVN 125
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 74/82 (90%), Gaps = 2/82 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FRE +KK++PKNKSVA VGKA G+KWKS+S+++KAPYVAKAEKRKVEYEK++K YN+
Sbjct: 49 MEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNK 108
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG P+E+EES+KS+SEVN
Sbjct: 109 KLEEG--PKEDEESDKSVSEVN 128
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 74/88 (84%), Gaps = 2/88 (2%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
ME+FR+ YK+ HP NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN+
Sbjct: 47 MEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNK 106
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDE 88
+QA G EEEES+KS SEVND+D+D+
Sbjct: 107 KQAAGA--AEEEESDKSRSEVNDDDEDQ 132
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 60/65 (92%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+ + K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN+
Sbjct: 55 MEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNK 114
Query: 61 RQAEG 65
+QAEG
Sbjct: 115 KQAEG 119
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 68/92 (73%), Gaps = 8/92 (8%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A+KAPY KA KRK EYEK M YN+
Sbjct: 64 LEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNK 123
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSG 92
EG+ +ESEKS SE+NDED E SG
Sbjct: 124 NLEEGS-----DESEKSRSEINDED---EASG 147
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 71/97 (73%), Gaps = 4/97 (4%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+E+FR+++ +P NKSVA VGKA G +WK+M++ DKAPYVAKAE RK EY K+++ YN
Sbjct: 46 LEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNL 105
Query: 61 RQAEGTKPEEEEESEKSMSEVNDEDDDEEGSGEEDDD 97
+ A GT EE++S+KS SEV++ +EE EDDD
Sbjct: 106 KLASGTN-REEDDSDKSKSEVDEAVSEEEA---EDDD 138
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 65/82 (79%), Gaps = 3/82 (3%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE ++ YN+
Sbjct: 56 MADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNK 115
Query: 61 RQAEGTKPEEEEESEKSMSEVN 82
+ EG ++EE S+KS SEVN
Sbjct: 116 K-LEGK--DDEEGSDKSKSEVN 134
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
MEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K + YN+
Sbjct: 52 MEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
Query: 61 RQAEGTK 67
++ K
Sbjct: 112 GESTAAK 118
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 50/60 (83%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
M EFRE++K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K + YN+
Sbjct: 53 MGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+++FR+++ +P NKSV VG+A G+KWK+M+E ++AP+VAK++ +K EY M+ YN
Sbjct: 45 LDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNM 104
Query: 61 RQAEGTKPEEEEESE 75
A G K ++E +
Sbjct: 105 ELANGNKTTGDDEKQ 119
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
+++FR+QY++++P KS+ +GK GEKWK+M+ +K Y A +++ E+ + M Y +
Sbjct: 74 LDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTK 133
Query: 61 RQAEGTKPEEEEESEKS 77
R G E E +S+ S
Sbjct: 134 RMESGAHDESETDSDYS 150
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAA-VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55
M +FR+ +K +H N S+A K GGEKWKS++E +K Y+ KA + K EY K +
Sbjct: 126 MSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 179
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEES 74
NKSV V K GE+WK++SE KAPY A+K K Y ++M+ Y R + E +++EE
Sbjct: 268 NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEE 327
Query: 75 E 75
E
Sbjct: 328 E 328
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PYV KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 160
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y
Sbjct: 20 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDREMKDY 78
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y
Sbjct: 20 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 78
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y
Sbjct: 104 CSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK +P+ + A K E+WK+MS +K+ + A+ KV Y+++MK+Y
Sbjct: 20 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 78
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1
SV=2
Length = 646
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
R+ KK+HP + VGK G+KW+ MS DK PY AKA+ K Y+ ++ +Y Q
Sbjct: 577 RDNIKKEHP-GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQ 633
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+FR Q K + P S+ V K GEKW +++ DK PY KA + K +YEKD+ Y
Sbjct: 107 DFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAY 161
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE++KK HP + + + K E+WK+MS +K + A+ KV YE++M++Y
Sbjct: 23 REEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSY 77
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 15 NKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
NKSV V K GE+WK++S+ KAPY A+K K Y + M+ Y R
Sbjct: 277 NKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKR 322
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66
A V KWK +SE +K Y KA K Y+K+++ YN++ A T
Sbjct: 407 ATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEAYNKKSAATT 454
>sp|B3DLD3|SOX18_XENTR Transcription factor Sox-18 OS=Xenopus tropicalis GN=sox18 PE=2
SV=1
Length = 362
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + K G+ WK++S A+K P+V +AE+ +V++ +D NY R
Sbjct: 96 AVLSKMLGQSWKNLSSAEKRPFVEEAERLRVQHLQDHPNYKYR 138
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 105 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 159
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK+ + A K E+WK+MS +KA + A+ KV Y+++MK+Y
Sbjct: 20 VQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDREMKDY 77
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y
Sbjct: 106 EFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK +P+ + A K E+WK+MS +KA + A+ KV Y+++MK+Y
Sbjct: 20 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDREMKDY 78
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK+++E +APY AKA K YE + + YN
Sbjct: 39 RENVREENP-GISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYN 92
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62
RE KK +P S VG+ GEKWK++S +K PY AKA+ K Y+ ++ Y Q
Sbjct: 573 RENLKKTNP-GISFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQ 629
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=nhp-6 PE=3 SV=1
Length = 103
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE ++++P S VGK GE+WK++S+ +APY AKA K YE + + YN
Sbjct: 41 RENVREENP-GVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYN 94
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59
RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+
Sbjct: 560 REKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>sp|Q8AXQ4|SOX12_XENLA Transcription factor Sox-12 OS=Xenopus laevis GN=sox12 PE=2 SV=1
Length = 244
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + ++ G++WK + + DK PYV +AE+ ++++ D NY R
Sbjct: 59 ADISRSLGQRWKLLQDTDKIPYVREAERLRLKHMADYPNYKYR 101
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
R+ + D+P + VGKA GEKWK++++A+K PY KA K YE + Y AE
Sbjct: 40 RDAIRADNP-GIAFGQVGKALGEKWKTLTDAEKVPYEEKATADKKRYEDEKAAYKANAAE 98
>sp|Q3KQ35|S17AA_XENLA Transcription factor Sox-17-alpha-A OS=Xenopus laevis GN=sox17a-a
PE=1 SV=1
Length = 380
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + K G+ WKS++ A+K P+V +AE+ +V++ +D NY R
Sbjct: 89 AELSKMLGKSWKSLTLAEKRPFVEEAERLRVQHMQDHPNYKYR 131
>sp|P40622|HMG1A_CHITE Mobility group protein 1A OS=Chironomus tentans GN=HMG1A PE=3
SV=1
Length = 114
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60
RE KK++P K V + K GGE W+ M DK+ + AKA K K EYEK MK + R
Sbjct: 20 RESIKKENPDFK-VTEIAKKGGELWRGMK--DKSEWEAKAAKMKEEYEKAMKEFER 72
>sp|Q90ZH9|S17AB_XENLA Transcription factor Sox-17-alpha-B OS=Xenopus laevis GN=sox17a-b
PE=1 SV=1
Length = 377
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + K G+ WK++S A+K P+V +AE+ +V++ +D NY R
Sbjct: 86 AELSKMLGKSWKALSLAEKRPFVEEAERLRVQHMQDHPNYKYR 128
>sp|Q06943|HMGZ_DROME High mobility group protein Z OS=Drosophila melanogaster GN=HmgZ
PE=1 SV=1
Length = 111
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
+ E REQ KKD+P +K V + K GGE W+ + DK + KA K K EY K +K Y
Sbjct: 17 LNETREQIKKDNPGSK-VTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKAVKEY 71
>sp|Q6BRB4|NHP6_DEBHA Non-histone chromosomal protein 6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=NHP6 PE=3 SV=1
Length = 92
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VGK GEKWK+++ DK PY KA+ K YEK+ Y ++ A
Sbjct: 45 SFGQVGKLLGEKWKALTPEDKIPYENKADTDKKRYEKEKAEYAKKNA 91
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VG+ GEKWK++S+ +K PY AKAE K YE + + YN +A
Sbjct: 47 SFGQVGRVLGEKWKALSDDEKQPYEAKAEADKKRYESEKELYNATKA 93
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64
RE+ K D+P + + +G G++WK ++ ++ PY KA + K YE++ K Y+ + A
Sbjct: 31 REKMKTDNP-DATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERYERERKEYDTKLAN 89
Query: 65 GTK 67
G K
Sbjct: 90 GEK 92
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y
Sbjct: 562 REKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEY 614
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
EF + K +P + V K GE WK++++++K PY+ +A K K +YEKD+ Y
Sbjct: 103 CSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVY 159
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK +PK + A K E+WK+MS+ +K+ + A+ KV Y++++K+Y
Sbjct: 20 VQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQEIKDY 78
>sp|Q28GD5|SOX7_XENTR Transcription factor Sox-7 OS=Xenopus tropicalis GN=sox7 PE=2 SV=1
Length = 362
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + K G+ WK++S A K PYV +AE+ +V++ +D NY R
Sbjct: 70 AELSKMLGKSWKALSPAQKRPYVEEAERLRVQHMQDYPNYKYR 112
>sp|Q9UVL1|NHP6_CANAL Non-histone chromosomal protein 6 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=NHP6 PE=3 SV=1
Length = 92
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63
S VGK GEKWK+++ DK PY KAE K YEK+ Y ++ +
Sbjct: 45 SFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91
>sp|O42342|SOX7_XENLA Transcription factor Sox-7 OS=Xenopus laevis GN=sox7 PE=2 SV=1
Length = 362
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + K G+ WK++S A K PYV +AE+ +V++ +D NY R
Sbjct: 70 AELSKMLGKSWKALSPAQKRPYVEEAERLRVQHMQDYPNYKYR 112
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAE--KRKVEYEKDMKNYNRRQAE 64
+ VG+ GEKWK+++E +KAPY AKAE K++ E EK++ + Q+E
Sbjct: 44 TFGQVGRILGEKWKALNEDEKAPYEAKAEADKKRYESEKELYIATKAQSE 93
>sp|P48434|SOX9_CHICK Transcription factor SOX-9 OS=Gallus gallus GN=SOX9 PE=2 SV=2
Length = 494
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-----NRRQAEGTKPEEEEE 73
A + K G+ W+ ++E++K P+V +AE+ +V+++KD +Y R+ + + E+EE
Sbjct: 134 AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKTVKNGQSEQEEG 193
Query: 74 SEKSMSEVN 82
SE++ N
Sbjct: 194 SEQTHISPN 202
>sp|Q6GLH8|S17B2_XENTR Transcription factor Sox-17-beta.2 OS=Xenopus tropicalis
GN=sox17b.2 PE=2 SV=2
Length = 373
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61
A + K G+ WKS++ A K P+V +AE+ +V++ +D +Y R
Sbjct: 86 AELSKMLGKSWKSLTLASKRPFVKEAERLRVQHIQDYPDYKYR 128
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY 78
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y
Sbjct: 106 CSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
++ RE++KK HP + + A K E+WK+MS +K+ + A+ K Y+++MKNY
Sbjct: 20 VQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 78
>sp|Q6P8W9|HMGB4_MOUSE High mobility group protein B4 OS=Mus musculus GN=Hmgb4 PE=2 SV=1
Length = 181
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 1 MEEFREQYKKDHPKNKSVAA--VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58
M FR ++K+ P N + + EKW+S+S+ +KA Y A AE K Y+++M NY
Sbjct: 20 MLNFRNKFKEQQP-NTYLGFKEFSRKCSEKWRSISKHEKAKYEALAELDKARYQQEMMNY 78
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPEEEEESEK 76
+V V KA G+ W + EA+K PY KA + +Y ++ + Y R Q +G K E ++
Sbjct: 119 TVVQVAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFEEQEAY-RNQCQGRKGNFLESAKT 177
Query: 77 SMSE 80
S+ +
Sbjct: 178 SLKQ 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.295 0.118 0.313
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,366,456
Number of Sequences: 539616
Number of extensions: 1651101
Number of successful extensions: 39046
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 842
Number of HSP's that attempted gapping in prelim test: 18189
Number of HSP's gapped (non-prelim): 11920
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)