Query 034314
Match_columns 98
No_of_seqs 132 out of 1041
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 12:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01388 SOX-TCF_HMG-box SOX-TC 99.7 7.8E-17 1.7E-21 100.4 6.0 58 1-59 13-70 (72)
2 cd01389 MATA_HMG-box MATA_HMG- 99.7 2.6E-16 5.6E-21 99.1 6.5 61 1-62 13-73 (77)
3 PTZ00199 high mobility group p 99.7 4.3E-16 9.3E-21 102.3 7.7 58 1-59 34-93 (94)
4 PF00505 HMG_box: HMG (high mo 99.6 6.3E-15 1.4E-19 89.7 7.2 58 1-59 12-69 (69)
5 smart00398 HMG high mobility g 99.6 1.1E-14 2.4E-19 88.0 7.1 58 1-59 13-70 (70)
6 cd01390 HMGB-UBF_HMG-box HMGB- 99.6 1.4E-14 3E-19 87.3 7.0 54 1-55 12-65 (66)
7 KOG0381 HMG box-containing pro 99.5 1.4E-13 3E-18 89.1 7.8 61 1-62 34-95 (96)
8 PF09011 HMG_box_2: HMG-box do 99.5 3.6E-13 7.8E-18 84.0 7.1 58 1-59 15-73 (73)
9 cd00084 HMG-box High Mobility 99.4 6.8E-13 1.5E-17 79.3 6.6 54 1-55 12-65 (66)
10 COG5648 NHP6B Chromatin-associ 99.4 5.9E-13 1.3E-17 98.7 7.4 66 1-67 82-147 (211)
11 KOG0527 HMG-box transcription 99.4 3E-13 6.5E-18 106.2 5.0 59 2-61 75-133 (331)
12 KOG4715 SWI/SNF-related matrix 98.9 1.1E-09 2.4E-14 86.1 4.7 62 3-65 78-139 (410)
13 KOG0526 Nucleosome-binding fac 98.8 4E-09 8.6E-14 87.2 5.3 56 2-62 548-603 (615)
14 KOG3248 Transcription factor T 98.4 4.4E-07 9.5E-12 72.1 4.2 65 1-66 203-267 (421)
15 KOG0528 HMG-box transcription 98.3 2.4E-07 5.2E-12 75.9 1.2 64 2-66 338-401 (511)
16 PF14887 HMG_box_5: HMG (high 98.2 7.7E-06 1.7E-10 52.8 6.8 63 3-67 17-79 (85)
17 KOG2746 HMG-box transcription 97.3 0.0002 4.4E-09 60.8 3.2 52 2-54 194-247 (683)
18 COG5648 NHP6B Chromatin-associ 97.1 0.00039 8.4E-09 52.0 2.5 54 2-56 156-209 (211)
19 PF08073 CHDNT: CHDNT (NUC034) 95.9 0.017 3.6E-07 34.9 3.9 31 2-33 21-51 (55)
20 PF06382 DUF1074: Protein of u 95.8 0.019 4.1E-07 42.2 4.8 42 4-46 89-130 (183)
21 TIGR03481 HpnM hopanoid biosyn 94.4 0.11 2.5E-06 38.0 5.3 45 16-60 64-110 (198)
22 PRK15117 ABC transporter perip 93.2 0.29 6.3E-06 36.1 5.7 48 13-61 66-115 (211)
23 PF04690 YABBY: YABBY protein; 84.8 1.4 3E-05 32.1 3.5 32 1-33 133-164 (170)
24 PF05494 Tol_Tol_Ttg2: Toluene 82.8 3.6 7.9E-05 28.7 5.0 47 13-60 36-84 (170)
25 PF06244 DUF1014: Protein of u 80.9 2.6 5.7E-05 29.1 3.6 30 4-34 87-116 (122)
26 KOG3223 Uncharacterized conser 74.1 4.7 0.0001 30.3 3.5 37 4-44 179-215 (221)
27 COG2854 Ttg2D ABC-type transpo 73.4 5.7 0.00012 29.7 3.8 43 22-64 77-120 (202)
28 PF01352 KRAB: KRAB box; Inte 70.4 3.7 8E-05 23.0 1.7 28 17-44 2-30 (41)
29 PF13412 HTH_24: Winged helix- 60.9 9.9 0.00022 20.9 2.3 24 8-32 11-34 (48)
30 PF11304 DUF3106: Protein of u 60.8 44 0.00096 22.1 5.8 24 21-44 12-35 (107)
31 PF06945 DUF1289: Protein of u 59.8 14 0.0003 21.4 2.9 24 17-45 23-46 (51)
32 cd08317 Death_ank Death domain 55.0 6.6 0.00014 24.6 1.0 51 13-64 3-60 (84)
33 PRK12750 cpxP periplasmic repr 51.0 75 0.0016 22.8 6.1 34 22-55 127-160 (170)
34 PRK10363 cpxP periplasmic repr 50.1 60 0.0013 23.6 5.4 41 18-59 110-150 (166)
35 PRK10236 hypothetical protein; 48.0 20 0.00044 27.4 2.8 24 20-43 117-140 (237)
36 PF05388 Carbpep_Y_N: Carboxyp 45.9 39 0.00085 22.8 3.7 31 18-48 45-75 (113)
37 PRK09706 transcriptional repre 45.5 71 0.0015 21.3 5.0 44 20-63 87-130 (135)
38 smart00271 DnaJ DnaJ molecular 42.8 48 0.001 18.5 3.3 32 3-34 21-57 (60)
39 PRK12751 cpxP periplasmic stre 42.5 66 0.0014 23.0 4.7 34 19-52 117-150 (162)
40 PF00226 DnaJ: DnaJ domain; I 40.0 34 0.00075 19.6 2.5 36 3-38 20-60 (64)
41 PF04994 TfoX_C: TfoX C-termin 38.4 1E+02 0.0022 19.4 5.1 38 3-41 37-78 (81)
42 PF12650 DUF3784: Domain of un 35.0 28 0.00061 22.1 1.6 16 28-43 25-40 (97)
43 PF06242 DUF1013: Protein of u 34.9 29 0.00062 24.6 1.8 19 8-27 77-95 (140)
44 cd06257 DnaJ DnaJ domain or J- 34.4 82 0.0018 17.1 3.7 31 3-33 20-54 (55)
45 PF02650 HTH_WhiA: WhiA C-term 32.9 30 0.00065 22.2 1.5 22 5-27 45-66 (85)
46 PRK09545 znuA high-affinity zi 31.8 1.9E+02 0.0041 22.3 6.0 53 12-64 144-200 (311)
47 PRK10266 curved DNA-binding pr 30.9 1.2E+02 0.0027 23.2 4.9 39 3-42 24-66 (306)
48 PRK14291 chaperone protein Dna 30.7 1.1E+02 0.0024 24.4 4.6 40 3-43 23-66 (382)
49 PTZ00037 DnaJ_C chaperone prot 30.4 1.2E+02 0.0026 24.8 4.9 41 3-43 48-88 (421)
50 cd01137 PsaA Metal binding pro 30.2 1.7E+02 0.0037 22.1 5.5 52 12-63 116-171 (287)
51 PHA03102 Small T antigen; Revi 30.0 90 0.002 22.2 3.7 35 3-37 27-61 (153)
52 cd07081 ALDH_F20_ACDH_EutE-lik 29.9 1.6E+02 0.0034 24.0 5.5 46 19-64 5-50 (439)
53 cd01670 Death Death Domain: a 29.6 30 0.00065 20.6 1.0 47 18-64 2-54 (79)
54 PF09164 VitD-bind_III: Vitami 29.5 1.3E+02 0.0028 18.8 3.8 24 4-28 18-41 (68)
55 cd08318 Death_NMPP84 Death dom 29.2 31 0.00067 21.8 1.1 49 18-66 10-64 (86)
56 cd01016 TroA Metal binding pro 27.5 1.9E+02 0.0041 21.7 5.3 52 12-63 100-155 (276)
57 PF01297 TroA: Periplasmic sol 26.7 2E+02 0.0043 21.0 5.2 47 18-64 101-147 (256)
58 cd01145 TroA_c Periplasmic bin 26.6 2E+02 0.0044 20.4 5.1 53 12-64 107-163 (203)
59 PRK14299 chaperone protein Dna 26.1 1.6E+02 0.0035 22.4 4.8 40 3-43 24-67 (291)
60 PRK14283 chaperone protein Dna 25.8 1.6E+02 0.0035 23.4 4.8 40 3-43 25-68 (378)
61 cd01018 ZntC Metal binding pro 25.4 2E+02 0.0042 21.4 5.0 53 12-64 111-167 (266)
62 cd08779 Death_PIDD Death Domai 25.3 40 0.00086 21.3 1.1 47 18-64 5-58 (86)
63 cd07133 ALDH_CALDH_CalB Conife 25.1 2.2E+02 0.0047 22.9 5.5 43 18-60 3-45 (434)
64 PF07813 LTXXQ: LTXXQ motif fa 25.0 1.3E+02 0.0029 18.2 3.5 23 20-42 76-98 (100)
65 KOG1610 Corticosteroid 11-beta 24.8 2.6E+02 0.0056 22.4 5.7 31 18-48 218-248 (322)
66 PRK14296 chaperone protein Dna 24.7 1.7E+02 0.0037 23.3 4.7 40 3-43 24-67 (372)
67 PF08367 M16C_assoc: Peptidase 24.6 1.7E+02 0.0036 21.6 4.5 33 18-50 12-44 (248)
68 PF05914 RIB43A: RIB43A; Inte 24.5 14 0.00029 29.9 -1.5 36 7-42 251-287 (379)
69 cd08306 Death_FADD Fas-associa 24.4 40 0.00087 21.3 1.0 49 17-65 4-59 (86)
70 TIGR00787 dctP tripartite ATP- 24.4 1.9E+02 0.0041 21.1 4.7 27 26-52 213-239 (257)
71 PF12550 GCR1_C: Transcription 22.9 1.2E+02 0.0025 18.8 2.9 36 6-42 16-51 (81)
72 PF01710 HTH_Tnp_IS630: Transp 22.7 92 0.002 20.6 2.5 21 5-26 62-82 (119)
73 PRK14281 chaperone protein Dna 22.6 1.5E+02 0.0032 23.8 4.0 40 3-43 23-67 (397)
74 PF06628 Catalase-rel: Catalas 22.6 88 0.0019 18.8 2.2 20 24-43 12-31 (68)
75 PRK14279 chaperone protein Dna 22.4 1.9E+02 0.0041 23.2 4.7 41 3-43 29-73 (392)
76 PF10045 DUF2280: Uncharacteri 22.4 1E+02 0.0023 20.8 2.7 26 19-44 49-74 (104)
77 PRK14285 chaperone protein Dna 22.4 1.7E+02 0.0036 23.3 4.3 41 2-43 22-67 (365)
78 cd08804 Death_ank2 Death domai 22.3 45 0.00098 21.0 0.9 52 16-67 5-63 (84)
79 PRK14280 chaperone protein Dna 21.7 2.1E+02 0.0046 22.7 4.8 40 3-43 24-67 (376)
80 cd07132 ALDH_F3AB Aldehyde deh 21.5 2.6E+02 0.0057 22.5 5.3 45 19-63 4-48 (443)
81 cd08805 Death_ank1 Death domai 21.2 33 0.00071 21.9 0.1 21 16-36 5-25 (84)
82 smart00509 TFS2N Domain in the 21.2 64 0.0014 19.9 1.4 21 11-32 52-72 (75)
83 PRK14295 chaperone protein Dna 21.1 2.4E+02 0.0053 22.5 5.0 41 3-43 29-73 (389)
84 PF03480 SBP_bac_7: Bacterial 20.8 2.1E+02 0.0045 21.2 4.4 26 27-52 214-239 (286)
85 PF15581 Imm35: Immunity prote 20.8 1.5E+02 0.0034 19.5 3.2 22 17-38 31-52 (93)
86 PF13875 DUF4202: Domain of un 20.7 83 0.0018 23.2 2.1 31 4-38 139-169 (185)
87 PF14513 DAG_kinase_N: Diacylg 20.6 1.6E+02 0.0035 20.5 3.5 39 26-64 2-40 (138)
88 TIGR03772 anch_rpt_subst ancho 20.5 3.1E+02 0.0068 22.9 5.6 53 12-64 310-366 (479)
89 cd07136 ALDH_YwdH-P39616 Bacil 20.4 3.9E+02 0.0084 21.7 6.1 46 18-63 3-48 (449)
90 cd07087 ALDH_F3-13-14_CALDH-li 20.4 2.9E+02 0.0062 22.0 5.3 43 19-61 4-46 (426)
91 PRK10455 periplasmic protein; 20.3 2.4E+02 0.0052 20.0 4.4 26 19-44 117-142 (161)
92 PRK14294 chaperone protein Dna 20.3 2.4E+02 0.0053 22.2 4.8 40 3-43 24-68 (366)
93 cd08780 Death_TRADD Death Doma 20.1 59 0.0013 21.4 1.1 20 18-37 5-24 (90)
94 cd07085 ALDH_F6_MMSDH Methylma 20.0 3.1E+02 0.0067 22.2 5.5 38 21-58 46-83 (478)
No 1
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.68 E-value=7.8e-17 Score=100.40 Aligned_cols=58 Identities=29% Similarity=0.468 Sum_probs=56.3
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
|+++|+.|+.+||+ +++++|+++||.+|+.||+++|++|.++|..++.+|.+++++|+
T Consensus 13 ~~~~r~~~~~~~p~-~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~ 70 (72)
T cd01388 13 SKRHRRKVLQEYPL-KENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYK 70 (72)
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999 99999999999999999999999999999999999999999986
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.66 E-value=2.6e-16 Score=99.05 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=58.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|..|+.+||+ +++++||++||.+|+.||+++|.+|.++|..++.+|.+++++|+-..
T Consensus 13 ~~~~r~~~~~~~p~-~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p 73 (77)
T cd01389 13 RQDKHAQLKTENPG-LTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTP 73 (77)
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccC
Confidence 57899999999999 99999999999999999999999999999999999999999997653
No 3
>PTZ00199 high mobility group protein; Provisional
Probab=99.66 E-value=4.3e-16 Score=102.27 Aligned_cols=58 Identities=45% Similarity=0.731 Sum_probs=55.5
Q ss_pred ChHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 1 MEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s--~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
|+++|..|+.+||+ ++ +++|+++||++|++||+++|.+|+.+|..++.+|..+|..|+
T Consensus 34 ~~~~R~~i~~~~P~-~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~Y~ 93 (94)
T PTZ00199 34 AKEKRAEIIAENPE-LAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAEYA 93 (94)
T ss_pred HHHHHHHHHHHCcC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999 65 899999999999999999999999999999999999999995
No 4
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.59 E-value=6.3e-15 Score=89.69 Aligned_cols=58 Identities=38% Similarity=0.649 Sum_probs=56.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
|+++|..|+..||+ +++++|+++||.+|++||+++|.+|...|...+.+|..+|+.|+
T Consensus 12 ~~~~~~~~k~~~p~-~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 12 CKEKRAKLKEENPD-LSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp HHHHHHHHHHHSTT-STHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-cccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56889999999999 99999999999999999999999999999999999999999996
No 5
>smart00398 HMG high mobility group.
Probab=99.57 E-value=1.1e-14 Score=88.02 Aligned_cols=58 Identities=43% Similarity=0.700 Sum_probs=55.8
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
|+++|..++.+||+ +++++|+++||.+|+.||+++|.+|.++|..++.+|...++.|+
T Consensus 13 ~~~~r~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 13 SQENRAKIKAENPD-LSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred HHHHHHHHHHHCcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999 99999999999999999999999999999999999999999884
No 6
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.56 E-value=1.4e-14 Score=87.32 Aligned_cols=54 Identities=50% Similarity=0.724 Sum_probs=52.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~ 55 (98)
|+++|..++..||+ +++++|+++||.+|++||+++|.+|.++|..++.+|..+|
T Consensus 12 ~~~~r~~~~~~~p~-~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 12 SQEQRPKLKKENPD-ASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred HHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999 9999999999999999999999999999999999999876
No 7
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.49 E-value=1.4e-13 Score=89.06 Aligned_cols=61 Identities=41% Similarity=0.644 Sum_probs=57.5
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHH-HHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK-NYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~-~Y~~~~ 62 (98)
|++.|..++.+||+ +++.+|+++||++|++|++++|.+|+..|..++.+|..+|. .|+...
T Consensus 34 ~~~~~~~~k~~~p~-~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 34 SSEQRSKIKAENPG-LSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46789999999999 99999999999999999999999999999999999999999 888754
No 8
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.45 E-value=3.6e-13 Score=83.99 Aligned_cols=58 Identities=41% Similarity=0.713 Sum_probs=51.5
Q ss_pred ChHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 1 MEEFREQYKKD-HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 1 ~qe~R~~vk~e-nP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
|++++..++.. +|. .++.++++.||.+|++||+++|.+|+++|..++.+|..+|..|+
T Consensus 15 ~~~~~~~~k~~G~~~-~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 15 MKEMRKEVKEEGGQK-QSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp HHHHHHHHHHHT-T--SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56889999999 777 88999999999999999999999999999999999999999985
No 9
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.42 E-value=6.8e-13 Score=79.32 Aligned_cols=54 Identities=46% Similarity=0.685 Sum_probs=51.6
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~ 55 (98)
|+++|..++..||+ +++.+|+++||.+|+.|++++|.+|.++|...+.+|...+
T Consensus 12 ~~~~~~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 12 SQEHRAEVKAENPG-LSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred HHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999 9999999999999999999999999999999999999875
No 10
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.42 E-value=5.9e-13 Score=98.72 Aligned_cols=66 Identities=29% Similarity=0.626 Sum_probs=63.9
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 67 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~~ 67 (98)
++.+|.+|+..||. ++|++|+++||++|++||+++|.+|...|..++++|++++..|..+.+++.+
T Consensus 82 ~~~~R~ei~~~~p~-l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~~k~~~~~~ 147 (211)
T COG5648 82 SAENRDEIRKENPK-LTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYNKKLPNKAP 147 (211)
T ss_pred HHHHHHHHHHhCCC-CChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhhcccCCCCC
Confidence 46899999999999 8999999999999999999999999999999999999999999999999988
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.40 E-value=3e-13 Score=106.16 Aligned_cols=59 Identities=31% Similarity=0.561 Sum_probs=56.2
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 2 qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
+..|.+|..+||. +.++||||.||.+||.|++++|.||.+.|+++|+.|++++++|+-+
T Consensus 75 q~~RRkma~qnP~-mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYR 133 (331)
T KOG0527|consen 75 QGQRRKLAKQNPK-MHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYR 133 (331)
T ss_pred HHHHHHHHHhCcc-hhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcccc
Confidence 5789999999999 9999999999999999999999999999999999999999998644
No 12
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=98.93 E-value=1.1e-09 Score=86.08 Aligned_cols=62 Identities=27% Similarity=0.500 Sum_probs=58.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCC
Q 034314 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65 (98)
Q Consensus 3 e~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~ 65 (98)
.+|.+|++.||. +...+|+|+||.+|..|++++|+.|...+...|..|.+.|+.|.......
T Consensus 78 kvWd~VkA~nPe-~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~sp~y~ 139 (410)
T KOG4715|consen 78 KVWDQVKASNPE-LKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYL 139 (410)
T ss_pred hhhhhhhccCcc-hHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCCchHH
Confidence 478999999999 99999999999999999999999999999999999999999998776543
No 13
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=98.84 E-value=4e-09 Score=87.24 Aligned_cols=56 Identities=45% Similarity=0.633 Sum_probs=51.8
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 2 qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
+.-|..||.. + +++++|+|.+|++|+.|+. |.+|+.+|+.+|.||..+|+.|+...
T Consensus 548 ~~~r~~ik~d--g-i~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk~g~ 603 (615)
T KOG0526|consen 548 NASRESIKED--G-ISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYKNGQ 603 (615)
T ss_pred HhhhhhHhhc--C-chHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhcCCC
Confidence 5678899988 7 8999999999999999999 99999999999999999999999444
No 14
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=98.36 E-value=4.4e-07 Score=72.08 Aligned_cols=65 Identities=23% Similarity=0.376 Sum_probs=58.7
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~ 66 (98)
|.++|..|.++.-- .-..+|.++||.+|..||-+|..+|.++|+++|.-|...++.|-++-..+.
T Consensus 203 MKEmRa~vvaEctl-KeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdNYgK 267 (421)
T KOG3248|consen 203 MKEMRAKVVAECTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK 267 (421)
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 67899999999965 678999999999999999999999999999999999999999977766653
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=98.28 E-value=2.4e-07 Score=75.92 Aligned_cols=64 Identities=19% Similarity=0.361 Sum_probs=57.7
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 034314 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66 (98)
Q Consensus 2 qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~ 66 (98)
++-|..|...+|+ +.+..|||+||-+|+.||..+|+||.+.-.++-..|...++.|+-+..++-
T Consensus 338 kDERRKILqA~PD-MHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPRPKR 401 (511)
T KOG0528|consen 338 KDERRKILQAFPD-MHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPRPKR 401 (511)
T ss_pred chhhhhhhhcCcc-ccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCCCCc
Confidence 4668899999999 999999999999999999999999999999998899999999987765543
No 16
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.22 E-value=7.7e-06 Score=52.83 Aligned_cols=63 Identities=19% Similarity=0.364 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 034314 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 67 (98)
Q Consensus 3 e~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~~ 67 (98)
..+..+.+.+|+ -+..+ -+.+...|++|+..+|-+|+..|.++..+|..+|..|+...+..+.
T Consensus 17 ~vi~dYla~~~~-dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~~~~~~ 79 (85)
T PF14887_consen 17 SVIGDYLAKFRN-DRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAPADANS 79 (85)
T ss_dssp HHHHHHHHHTTS-THHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CCCTTTT
T ss_pred HHHHHHHHHhhH-hHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 344556778888 56666 4599999999999999999999999999999999999988777654
No 17
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=97.29 E-value=0.0002 Score=60.83 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=47.9
Q ss_pred hHHH--HHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHH
Q 034314 2 EEFR--EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54 (98)
Q Consensus 2 qe~R--~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e 54 (98)
+.+| ..++..||+ ..+.-|++|||+.|-+|.+.||+.|.++|...|..|.+.
T Consensus 194 krhr~~g~vhq~~pn-~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka 247 (683)
T KOG2746|consen 194 KRHRGEGRVHQRHPN-QDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA 247 (683)
T ss_pred hhcCCccchhccCcc-ccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh
Confidence 4566 778899999 999999999999999999999999999999999999875
No 18
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=97.07 E-value=0.00039 Score=52.00 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=49.0
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHH
Q 034314 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 56 (98)
Q Consensus 2 qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~ 56 (98)
+.+|+++...+|. .+..++++++|..|+.|++.-|.+|.+.++.++..|...|+
T Consensus 156 ~~~r~~~~~~~~~-~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 156 PKIRPKVEGPSPD-KALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred HHhccccCCCCcc-hhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 4577888888898 88999999999999999999999999999999999987765
No 19
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.90 E-value=0.017 Score=34.93 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=27.7
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 034314 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 33 (98)
Q Consensus 2 qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls 33 (98)
+-.||.|.+.||+ +..+-|..+++.+||.-+
T Consensus 21 q~vRP~l~~~NPk-~~~sKl~~l~~AKwrEF~ 51 (55)
T PF08073_consen 21 QHVRPLLAKANPK-APMSKLMMLLQAKWREFQ 51 (55)
T ss_pred HHHHHHHHHHCCC-CcHHHHHHHHHHHHHHHH
Confidence 4579999999999 899999999999998643
No 20
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=95.85 E-value=0.019 Score=42.17 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHH
Q 034314 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 46 (98)
Q Consensus 4 ~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~ 46 (98)
+-..++..|.+ ++..++....+..|..||+.+|..|..++-.
T Consensus 89 FLReFRrkh~~-L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~ 130 (183)
T PF06382_consen 89 FLREFRRKHCG-LSPQDLIQRAARAWCRLSEAEKNRYRRMAPS 130 (183)
T ss_pred HHHHHHHHccC-CCHHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 45678889999 9999999999999999999999999997553
No 21
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=94.37 E-value=0.11 Score=37.98 Aligned_cols=45 Identities=18% Similarity=0.438 Sum_probs=39.8
Q ss_pred CCHHHHHH-HHHHHhhcCChhHhhhhHHHHHH-HHHHHHHHHHHHhh
Q 034314 16 KSVAAVGK-AGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNR 60 (98)
Q Consensus 16 ~s~~eIsK-~ige~Wk~ls~eeK~~Ye~~A~~-dK~rY~~e~~~Y~~ 60 (98)
+.|..|++ .||..|+.+|+++|+.|...... ....|-..+..|..
T Consensus 64 ~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~ 110 (198)
T TIGR03481 64 FDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAG 110 (198)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 67888988 78999999999999999998777 88889999988864
No 22
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=93.21 E-value=0.29 Score=36.14 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=40.5
Q ss_pred CCCCCHHHHHH-HHHHHhhcCChhHhhhhHHHHHH-HHHHHHHHHHHHhhh
Q 034314 13 PKNKSVAAVGK-AGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRR 61 (98)
Q Consensus 13 P~~~s~~eIsK-~ige~Wk~ls~eeK~~Ye~~A~~-dK~rY~~e~~~Y~~~ 61 (98)
|. +.|..||+ .||..|+.+|+++|..|...... +..-|-..+..|...
T Consensus 66 p~-~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~q 115 (211)
T PRK15117 66 PY-VQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHGQ 115 (211)
T ss_pred cc-CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 66 68888887 67899999999999999998655 777899999999643
No 23
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=84.75 E-value=1.4 Score=32.12 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=28.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 33 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls 33 (98)
|.+.-++||+.||+ ++-.|+-+..+..|...+
T Consensus 133 ~k~ei~rik~~~p~-ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 133 MKEEIQRIKAENPD-ISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHhhhhCc
Confidence 34566889999999 999999999999998764
No 24
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=82.82 E-value=3.6 Score=28.73 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHH-HHHHhhcCChhHhhhhHHHHHH-HHHHHHHHHHHHhh
Q 034314 13 PKNKSVAAVGKA-GGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNR 60 (98)
Q Consensus 13 P~~~s~~eIsK~-ige~Wk~ls~eeK~~Ye~~A~~-dK~rY~~e~~~Y~~ 60 (98)
|. +.+..|++. ||.-|+.||++++..|...... ....|-..+..|..
T Consensus 36 ~~-~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 36 PY-FDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp GG-B-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred Hh-CCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45 678888875 5678999999999999998655 67778888888874
No 25
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=80.86 E-value=2.6 Score=29.11 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 034314 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 34 (98)
Q Consensus 4 ~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~ 34 (98)
.-+.|+.+||| +..+.+--+|-..|..-++
T Consensus 87 ~Lp~lK~E~Pg-LrlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 87 RLPELKEENPG-LRLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred HhHHHHhhCCC-chHHHHHHHHHHHHhcCCC
Confidence 45899999999 9999999999999987654
No 26
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.09 E-value=4.7 Score=30.29 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHH
Q 034314 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKA 44 (98)
Q Consensus 4 ~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A 44 (98)
..|.|+.+||+ +..+.+-.+|-..|..-++. ||.+++
T Consensus 179 ~LPrLK~e~P~-lrlsQ~Kqll~Kew~KsPDN---P~Nq~~ 215 (221)
T KOG3223|consen 179 RLPRLKKENPG-LRLSQYKQLLKKEWQKSPDN---PFNQAA 215 (221)
T ss_pred hchhhhhcCCC-ccHHHHHHHHHHHHhhCCCC---hhhHHh
Confidence 35789999999 99999999999999987775 776654
No 27
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.38 E-value=5.7 Score=29.70 Aligned_cols=43 Identities=12% Similarity=0.249 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCChhHhhhhHHHHHH-HHHHHHHHHHHHhhhCCC
Q 034314 22 GKAGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 22 sK~ige~Wk~ls~eeK~~Ye~~A~~-dK~rY~~e~~~Y~~~~~~ 64 (98)
...||.-|+++|+++++.|...... +...|...+..|+.....
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~~ 120 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTLK 120 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCce
Confidence 3467889999999999999998654 778899999999876543
No 28
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=70.41 E-value=3.7 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=15.2
Q ss_pred CHHHHHHHHHH-HhhcCChhHhhhhHHHH
Q 034314 17 SVAAVGKAGGE-KWKSMSEADKAPYVAKA 44 (98)
Q Consensus 17 s~~eIsK~ige-~Wk~ls~eeK~~Ye~~A 44 (98)
+|.+|+--++. .|..|.+.+|.-|.+..
T Consensus 2 tf~Dvav~fs~eEW~~L~~~Qk~ly~dvm 30 (41)
T PF01352_consen 2 TFEDVAVYFSQEEWELLDPAQKNLYRDVM 30 (41)
T ss_dssp -----TT---HHHHHTS-HHHHHHHHHHH
T ss_pred eEEEEEEEcChhhcccccceecccchhHH
Confidence 46667666664 59999999999887654
No 29
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=60.86 E-value=9.9 Score=20.88 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=17.2
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcC
Q 034314 8 YKKDHPKNKSVAAVGKAGGEKWKSM 32 (98)
Q Consensus 8 vk~enP~~~s~~eIsK~ige~Wk~l 32 (98)
+...||. +++.+|++.+|=.+.++
T Consensus 11 ~l~~~~~-~t~~ela~~~~is~~tv 34 (48)
T PF13412_consen 11 YLRENPR-ITQKELAEKLGISRSTV 34 (48)
T ss_dssp HHHHCTT-S-HHHHHHHHTS-HHHH
T ss_pred HHHHcCC-CCHHHHHHHhCCCHHHH
Confidence 3456999 99999999998655544
No 30
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=60.83 E-value=44 Score=22.11 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=11.3
Q ss_pred HHHHHHHHhhcCChhHhhhhHHHH
Q 034314 21 VGKAGGEKWKSMSEADKAPYVAKA 44 (98)
Q Consensus 21 IsK~ige~Wk~ls~eeK~~Ye~~A 44 (98)
+..-+...|..|++..|..+...|
T Consensus 12 ~L~pl~~~W~~l~~~qr~k~l~~a 35 (107)
T PF11304_consen 12 ALAPLAERWNSLPPEQRRKWLQIA 35 (107)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334444455555555554444433
No 31
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=59.85 E-value=14 Score=21.38 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHhhcCChhHhhhhHHHHH
Q 034314 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAE 45 (98)
Q Consensus 17 s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~ 45 (98)
+..||. .|+.|++.+|........
T Consensus 23 T~dEI~-----~W~~~s~~er~~i~~~l~ 46 (51)
T PF06945_consen 23 TLDEIR-----DWKSMSDDERRAILARLR 46 (51)
T ss_pred cHHHHH-----HHhhCCHHHHHHHHHHHH
Confidence 567775 899999999987666543
No 32
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=54.99 E-value=6.6 Score=24.62 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHH-------HHHHHHHHHHHhhhCCC
Q 034314 13 PKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKR-------KVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 13 P~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~d-------K~rY~~e~~~Y~~~~~~ 64 (98)
|. +.+..|++.||..|+.|...---+..+.-.-. ..+-...+..|..+...
T Consensus 3 ~~-~~l~~ia~~lG~dW~~LAr~Lg~~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~ 60 (84)
T cd08317 3 AD-IRLADISNLLGSDWPQLARELGVSETDIDLIKAENPNSLAQQAQAMLKLWLEREGK 60 (84)
T ss_pred cc-chHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 44 78999999999999998665443333322111 13333455666666443
No 33
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=51.00 E-value=75 Score=22.76 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHH
Q 034314 22 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55 (98)
Q Consensus 22 sK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~ 55 (98)
.++....+..||+++|..|.++-..-...|...+
T Consensus 127 ~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 127 LEKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567999999999999999888777777666
No 34
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=50.06 E-value=60 Score=23.57 Aligned_cols=41 Identities=10% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
.-+..++-..++.-|||++|..|......--..++. ++.+.
T Consensus 110 ~Vem~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~-~~~~q 150 (166)
T PRK10363 110 QVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD-VTQWQ 150 (166)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 446777788899999999999999887777767654 55444
No 35
>PRK10236 hypothetical protein; Provisional
Probab=48.03 E-value=20 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcCChhHhhhhHHH
Q 034314 20 AVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 20 eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
=+.++++..|..||+++++.+...
T Consensus 117 il~kll~~a~~kms~eE~~~L~~~ 140 (237)
T PRK10236 117 LLEQFLRNTWKKMDEEHKQEFLHA 140 (237)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHH
Confidence 468899999999999999877664
No 36
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=45.87 E-value=39 Score=22.82 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhHHHHHHHH
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 48 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK 48 (98)
+.-|++.+++.++.||.+.|..|.+++..--
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~fP 75 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLLFP 75 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHCc
Confidence 5677888999999999999999999887633
No 37
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=45.45 E-value=71 Score=21.32 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 034314 20 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63 (98)
Q Consensus 20 eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~ 63 (98)
.--+.|-..|+.|+++++......+......|...+..|-.+..
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 130 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKARK 130 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44577889999999999999999999999999999998865543
No 38
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=42.84 E-value=48 Score=18.52 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCCh
Q 034314 3 EFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSE 34 (98)
Q Consensus 3 e~R~~vk~enP~~~s-----~~eIsK~ige~Wk~ls~ 34 (98)
.+|..++.-||+... ..++...|.+-|..|..
T Consensus 21 ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 21 AYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred HHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 355666677887322 34566666666666654
No 39
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=42.55 E-value=66 Score=23.03 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHH
Q 034314 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 52 (98)
Q Consensus 19 ~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~ 52 (98)
....++.-.++..|||++|..|.++...--.+.+
T Consensus 117 v~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~ 150 (162)
T PRK12751 117 VEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQ 150 (162)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3455666788999999999999987666555554
No 40
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=39.97 E-value=34 Score=19.56 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCCC-CHH----HHHHHHHHHhhcCChhHhh
Q 034314 3 EFREQYKKDHPKNK-SVA----AVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 3 e~R~~vk~enP~~~-s~~----eIsK~ige~Wk~ls~eeK~ 38 (98)
.+|..++.-||+.. ... ++...|..-|..|+...+.
T Consensus 20 ~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 20 AYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp HHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence 45677788899842 233 7888899999998777653
No 41
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found in association with the N-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain. For example it is found associated with Q9JZR1 from SWISSPROT in IPR002125 from INTERPRO.; PDB: 3BQT_A 3MAB_A.
Probab=38.38 E-value=1e+02 Score=19.35 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH----HHhhcCChhHhhhhH
Q 034314 3 EFREQYKKDHPKNKSVAAVGKAGG----EKWKSMSEADKAPYV 41 (98)
Q Consensus 3 e~R~~vk~enP~~~s~~eIsK~ig----e~Wk~ls~eeK~~Ye 41 (98)
+.+-.|+..+|+ .++.-+-...| -.|..|+.++|....
T Consensus 37 ~a~~~Lk~~~~~-~~~~~L~aL~gAi~g~~~~~L~~~~K~~L~ 78 (81)
T PF04994_consen 37 EAYLRLKASGPS-VCLNLLYALEGAIQGIHWADLPDEEKQELL 78 (81)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHCTS-GGGS-HHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHcCCCHHHCCHHHHHHHH
Confidence 456788899988 77666665555 569999999997654
No 42
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=34.96 E-value=28 Score=22.13 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.1
Q ss_pred HhhcCChhHhhhhHHH
Q 034314 28 KWKSMSEADKAPYVAK 43 (98)
Q Consensus 28 ~Wk~ls~eeK~~Ye~~ 43 (98)
-|++||.+||+.|-..
T Consensus 25 Gyntms~eEk~~~D~~ 40 (97)
T PF12650_consen 25 GYNTMSKEEKEKYDKK 40 (97)
T ss_pred hcccCCHHHHHHhhHH
Confidence 5899999999988653
No 43
>PF06242 DUF1013: Protein of unknown function (DUF1013); InterPro: IPR010421 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=34.92 E-value=29 Score=24.62 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=17.0
Q ss_pred HHHhCCCCCCHHHHHHHHHH
Q 034314 8 YKKDHPKNKSVAAVGKAGGE 27 (98)
Q Consensus 8 vk~enP~~~s~~eIsK~ige 27 (98)
|.+.||. ++-+.|+|+||-
T Consensus 77 lvk~hPe-l~DaQI~kLiGT 95 (140)
T PF06242_consen 77 LVKNHPE-LSDAQIAKLIGT 95 (140)
T ss_pred HHhcCCc-ccHHHHHHHhcC
Confidence 5678999 999999999996
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=34.39 E-value=82 Score=17.10 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCC
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMS 33 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls 33 (98)
.+|..++.-||+... ..+....|...|..|+
T Consensus 20 ~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 20 AYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 355666667777322 3445555555555443
No 45
>PF02650 HTH_WhiA: WhiA C-terminal HTH domain; InterPro: IPR023054 This domain is found at the C terminus of the sporulation regulator WhiA. It is predicted to form a DNA binding helix-turn-helix structure []. ; PDB: 3HYI_A.
Probab=32.88 E-value=30 Score=22.22 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=15.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH
Q 034314 5 REQYKKDHPKNKSVAAVGKAGGE 27 (98)
Q Consensus 5 R~~vk~enP~~~s~~eIsK~ige 27 (98)
-..++-+||+ +|.++|+..+-.
T Consensus 45 ~a~lRl~~Pd-~SL~EL~~~~~~ 66 (85)
T PF02650_consen 45 FAELRLENPD-ASLKELGELLEP 66 (85)
T ss_dssp HHHHHHH-TT-S-HHHHHHTT--
T ss_pred HHHHHHHCcc-ccHHHHHHHHcC
Confidence 3568889999 999999988765
No 46
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=31.82 E-value=1.9e+02 Score=22.29 Aligned_cols=53 Identities=17% Similarity=0.048 Sum_probs=42.7
Q ss_pred CCCCC-C---HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 12 HPKNK-S---VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 12 nP~~~-s---~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
||.+| + ...+++.|+.....+.++.+..|...+..-..+-......|+.....
T Consensus 144 dPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~ 200 (311)
T PRK09545 144 NMHIWLSPEIARATAVAIHDKLVELMPQSKAKLDANLKDFEAQLAQTDKQIGNQLAP 200 (311)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 68764 2 57888899999999999999999999988888777777777766554
No 47
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=30.89 E-value=1.2e+02 Score=23.23 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVA 42 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~ 42 (98)
.+|.-.++-||+ .. +.+..+.|.+.|..|+...|..-.+
T Consensus 24 ayr~la~k~HPD-~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD 66 (306)
T PRK10266 24 AYRRLARKYHPD-VSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66 (306)
T ss_pred HHHHHHHHHCcC-CCCCccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 467777888998 43 6778889999999999777654444
No 48
>PRK14291 chaperone protein DnaJ; Provisional
Probab=30.65 E-value=1.1e+02 Score=24.40 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|...++-||+ .. ..+.-+.|.+.|..|+...|+.-.+.
T Consensus 23 ayr~la~~~HPD-~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~ 66 (382)
T PRK14291 23 AYRRLARKYHPD-FNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQ 66 (382)
T ss_pred HHHHHHHHHCCC-CCCCccHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 467778888998 43 45778899999999999887655543
No 49
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=30.36 E-value=1.2e+02 Score=24.79 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|...++-||+.....+..+.|.+.|..|+..+|+..++.
T Consensus 48 AYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 48 AYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 46777888899932346888899999999998887766554
No 50
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.16 E-value=1.7e+02 Score=22.15 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=42.0
Q ss_pred CCCCC-C---HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 034314 12 HPKNK-S---VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63 (98)
Q Consensus 12 nP~~~-s---~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~ 63 (98)
||..| + ...++..|+.....+.+.-+..|...+.....+.......|+....
T Consensus 116 dPH~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~ 171 (287)
T cd01137 116 DPHAWMSPKNAIIYVKNIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAKFA 171 (287)
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67754 2 5788888999999999999999999998888887777777776554
No 51
>PHA03102 Small T antigen; Reviewed
Probab=29.96 E-value=90 Score=22.16 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHh
Q 034314 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 37 (98)
Q Consensus 3 e~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK 37 (98)
.+|...+.-||+.-...+..+.|.+.|..|+...+
T Consensus 27 AYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~ 61 (153)
T PHA03102 27 AYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVK 61 (153)
T ss_pred HHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHH
Confidence 46777788899832455677777777777766544
No 52
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=29.91 E-value=1.6e+02 Score=24.01 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 19 ~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
-+.++.....|+.++..+|..+..++...-+++..++...-..-..
T Consensus 5 i~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~G 50 (439)
T cd07081 5 VAAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAVSETG 50 (439)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566777789999999999999999988888888888876544333
No 53
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=29.59 E-value=30 Score=20.57 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhHH--HHHH----HHHHHHHHHHHHhhhCCC
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYVA--KAEK----RKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye~--~A~~----dK~rY~~e~~~Y~~~~~~ 64 (98)
+..|++.||..|+.|...-.-+..+ .... ...+-...+..|..+...
T Consensus 2 ~~~ia~~lg~~W~~la~~Lgl~~~~I~~i~~~~~~~~~~~~~mL~~W~~~~~~ 54 (79)
T cd01670 2 LDKLAKKLGKDWKKLARKLGLSDGEIDQIEEDNPRVREQAYQLLLKWEEREGD 54 (79)
T ss_pred HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHhCCCHHHHHHHHHHHHHhccCc
Confidence 4578899999999875554322222 1111 235555566677766654
No 54
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=29.51 E-value=1.3e+02 Score=18.84 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH
Q 034314 4 FREQYKKDHPKNKSVAAVGKAGGEK 28 (98)
Q Consensus 4 ~R~~vk~enP~~~s~~eIsK~ige~ 28 (98)
.+.++++..|+ .+..+|.-++..+
T Consensus 18 L~e~l~~k~P~-at~~~l~~lve~R 41 (68)
T PF09164_consen 18 LAERLRAKLPD-ATPTELKELVEKR 41 (68)
T ss_dssp HHHHHHHH-TT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHH
Confidence 45677888888 7777777666543
No 55
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.15 E-value=31 Score=21.79 Aligned_cols=49 Identities=14% Similarity=0.364 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcCC------hhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 034314 18 VAAVGKAGGEKWKSMS------EADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls------~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~ 66 (98)
+..|+..||..|+.|. ..+-..+........++...-+..|+.+....+
T Consensus 10 l~~ia~~iG~~Wk~Lar~LGls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~g~~A 64 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHLEMKDKEIRAIESDSEDIKMQAKQLLVAWQDREGSQA 64 (86)
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCccc
Confidence 6779999999999864 333333443323345666677888888866443
No 56
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.49 E-value=1.9e+02 Score=21.70 Aligned_cols=52 Identities=17% Similarity=0.020 Sum_probs=41.6
Q ss_pred CCCCC----CHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 034314 12 HPKNK----SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63 (98)
Q Consensus 12 nP~~~----s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~ 63 (98)
||..| ....+++.|+.....+.+.-+..|...+.....+....-..|+....
T Consensus 100 dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~ 155 (276)
T cd01016 100 DPHIWFDVKLWKYAVKAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDAYAKKKIA 155 (276)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67754 25788888999999999999999999998888887766666666544
No 57
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.71 E-value=2e+02 Score=20.97 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
...++..|+.....+.+.-+..|...+.....+....-..|+.....
T Consensus 101 ~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~ 147 (256)
T PF01297_consen 101 AKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAK 147 (256)
T ss_dssp HHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56788888999999999999999999999888888777777765544
No 58
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.56 E-value=2e+02 Score=20.40 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=41.8
Q ss_pred CCCCC-C---HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 12 HPKNK-S---VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 12 nP~~~-s---~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
||..| + ...+++.|+.....+.++-+..|...+.....+.......|+....+
T Consensus 107 dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~~ 163 (203)
T cd01145 107 NPHVWLDPNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFEG 163 (203)
T ss_pred CcCeecCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66643 2 57788888999999999999999999998888887777777665543
No 59
>PRK14299 chaperone protein DnaJ; Provisional
Probab=26.14 E-value=1.6e+02 Score=22.45 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|...++-||+ .. ..+..+.|.+.|..|+...|+.-.+.
T Consensus 24 ayr~la~~~HPD-~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 24 AFKKLARKYHPD-VNKSPGAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred HHHHHHHHHCcC-CCCChhHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 466777777998 42 45778889999999998776654443
No 60
>PRK14283 chaperone protein DnaJ; Provisional
Probab=25.77 E-value=1.6e+02 Score=23.40 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|.-.++-||+ .. ..+..+.|.+.|..|++..|+.-.+.
T Consensus 25 ayr~la~~~HPD-~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 25 AYRKLARKYHPD-VSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred HHHHHHHHHCcC-CCCCccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 467777888998 43 56788899999999999887655554
No 61
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.41 E-value=2e+02 Score=21.39 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=42.8
Q ss_pred CCCCC-C---HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 12 HPKNK-S---VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 12 nP~~~-s---~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
||.+| + ...+++.|+.....+.++-+..|...++....+.......|+.....
T Consensus 111 dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~ 167 (266)
T cd01018 111 DPHIWLSPANAKIMAENIYEALAELDPQNATYYQANLDALLAELDALDSEIRTILSK 167 (266)
T ss_pred CCccCcCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67654 2 57888899999999999999999999998888887777777766543
No 62
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=25.32 E-value=40 Score=21.34 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhH------HHH-HHHHHHHHHHHHHHhhhCCC
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYV------AKA-EKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye------~~A-~~dK~rY~~e~~~Y~~~~~~ 64 (98)
...|+..||..|+.|...-.-+.- ... ...+++-..-+..|+.....
T Consensus 5 l~~ia~~LG~~Wk~lar~LGlse~~Id~Ie~~~~~dl~eq~~~mL~~W~~~~~~ 58 (86)
T cd08779 5 LLSIAGRLGLDWQAIGLHLGLSYRELQRIKYNNRDDLDEQIFDMLFSWAQRQAG 58 (86)
T ss_pred HHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHCccCHHHHHHHHHHHHHHhcCC
Confidence 678999999999987544333222 221 22344555566677776544
No 63
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=25.12 E-value=2.2e+02 Score=22.86 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhh
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~ 60 (98)
+-+.++.....|+.++..+|..+..++...-..+..++.....
T Consensus 3 ~~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~ 45 (434)
T cd07133 3 LLERQKAAFLANPPPSLEERRDRLDRLKALLLDNQDALAEAIS 45 (434)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778899999999999999888888888888776544
No 64
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=24.99 E-value=1.3e+02 Score=18.22 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhcCChhHhhhhHH
Q 034314 20 AVGKAGGEKWKSMSEADKAPYVA 42 (98)
Q Consensus 20 eIsK~ige~Wk~ls~eeK~~Ye~ 42 (98)
.+.+.....+..||+++|..|..
T Consensus 76 ~~~~~~~~~~~vLt~eQk~~~~~ 98 (100)
T PF07813_consen 76 ERAKAQHALYAVLTPEQKEKFDQ 98 (100)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 44556667788888888887765
No 65
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=24.84 E-value=2.6e+02 Score=22.44 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhHHHHHHHH
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 48 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK 48 (98)
...+.+.+.+.|..|+.+.|+.|-+.+-.+.
T Consensus 218 ~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~ 248 (322)
T KOG1610|consen 218 PEKLEKRMKEIWERLPQETKDEYGEDYFEDY 248 (322)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 5788999999999999999999988765443
No 66
>PRK14296 chaperone protein DnaJ; Provisional
Probab=24.72 E-value=1.7e+02 Score=23.31 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|.-.++-||+ .. ..+.-+.|.+.|..|++.+|+.-.+.
T Consensus 24 ayrkla~~~HPD-~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 24 AYRKLAKQYHPD-LNKSPDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred HHHHHHHHHCcC-CCCCchHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 466667788998 43 55777889999999999887655554
No 67
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=24.62 E-value=1.7e+02 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHH
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 50 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~r 50 (98)
..++.+.|...+.+||++++....+.+...+++
T Consensus 12 ~~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L~~~ 44 (248)
T PF08367_consen 12 EEEEKEKLAAYKASLSEEEKEKIIEQTKELKER 44 (248)
T ss_dssp HHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999988887643
No 68
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=24.49 E-value=14 Score=29.93 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=25.0
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHhhcCChhHhhhhHH
Q 034314 7 QYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVA 42 (98)
Q Consensus 7 ~vk~enP~~~-s~~eIsK~ige~Wk~ls~eeK~~Ye~ 42 (98)
.+..+||.+. |..--.+.|..+||.||+++...+..
T Consensus 251 dlLtEnp~~a~s~~gp~Rv~~d~wKGMs~eQl~~i~~ 287 (379)
T PF05914_consen 251 DLLTENPQVAQSSFGPHRVIPDRWKGMSPEQLEEIRK 287 (379)
T ss_pred ccccCCchhccccCCCCCCCCcccCCCCHHHHHHHHH
Confidence 3556788731 22222567778999999999988776
No 69
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=24.42 E-value=40 Score=21.29 Aligned_cols=49 Identities=8% Similarity=0.303 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHhhcC------ChhHhhhhHHHH-HHHHHHHHHHHHHHhhhCCCC
Q 034314 17 SVAAVGKAGGEKWKSM------SEADKAPYVAKA-EKRKVEYEKDMKNYNRRQAEG 65 (98)
Q Consensus 17 s~~eIsK~ige~Wk~l------s~eeK~~Ye~~A-~~dK~rY~~e~~~Y~~~~~~~ 65 (98)
.|.-|+..||..|+.| |+.+-....... ...+++-...+..|+......
T Consensus 4 ~f~~i~~~lG~~Wk~laR~LGlse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~ 59 (86)
T cd08306 4 AFDVICENVGRDWRKLARKLGLSETKIESIEEAHPRNLREQVRQSLREWKKIKKKE 59 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcc
Confidence 3778899999999865 444333333322 122344445566777665533
No 70
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=24.35 E-value=1.9e+02 Score=21.12 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=20.8
Q ss_pred HHHhhcCChhHhhhhHHHHHHHHHHHH
Q 034314 26 GEKWKSMSEADKAPYVAKAEKRKVEYE 52 (98)
Q Consensus 26 ge~Wk~ls~eeK~~Ye~~A~~dK~rY~ 52 (98)
-..|..||++.|.-..+.+...-..+.
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~~~ 239 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEYQR 239 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999887766544433
No 71
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=22.90 E-value=1.2e+02 Score=18.83 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=23.5
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHH
Q 034314 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVA 42 (98)
Q Consensus 6 ~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~ 42 (98)
.+...-.++..++..+-+.-|..|+.-+. ++..|..
T Consensus 16 ~Ew~~g~~g~psI~~le~~yG~~WR~~~~-~~~~y~r 51 (81)
T PF12550_consen 16 REWFTGLNGQPSIRSLEKKYGSKWRRDSK-ERRTYSR 51 (81)
T ss_pred HHHhcCCCCCCCHHHHHHHhChhhccCcc-cchhHHH
Confidence 33333333436899999999999997444 3455554
No 72
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.67 E-value=92 Score=20.55 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q 034314 5 REQYKKDHPKNKSVAAVGKAGG 26 (98)
Q Consensus 5 R~~vk~enP~~~s~~eIsK~ig 26 (98)
-..+...||+ ++..||++.+|
T Consensus 62 L~~~v~~~pd-~tl~Ela~~l~ 82 (119)
T PF01710_consen 62 LKALVEENPD-ATLRELAERLG 82 (119)
T ss_pred HHHHHHHCCC-cCHHHHHHHcC
Confidence 4567788999 99999987664
No 73
>PRK14281 chaperone protein DnaJ; Provisional
Probab=22.57 E-value=1.5e+02 Score=23.84 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s-----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|.-.++-||+ .. ..+..+.|.+.|..|+...|..-.+.
T Consensus 23 ayr~la~~~HPD-~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 67 (397)
T PRK14281 23 AYRKLALKYHPD-KNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQ 67 (397)
T ss_pred HHHHHHHHHCCC-cCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 467778888998 43 35788999999999998887554443
No 74
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=22.55 E-value=88 Score=18.78 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=16.2
Q ss_pred HHHHHhhcCChhHhhhhHHH
Q 034314 24 AGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 24 ~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.-|.-|+.|++.+|..+..-
T Consensus 12 Qa~~ly~~l~~~er~~lv~n 31 (68)
T PF06628_consen 12 QARDLYRVLSDEERERLVEN 31 (68)
T ss_dssp HHHHHHHHSSHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHH
Confidence 45678999999999888763
No 75
>PRK14279 chaperone protein DnaJ; Provisional
Probab=22.42 E-value=1.9e+02 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|...++-||+... ..+..+.|.+.|..|++.+|+.-++.
T Consensus 29 ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 29 AYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred HHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 467778888998312 45778899999999999888755554
No 76
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.38 E-value=1e+02 Score=20.75 Aligned_cols=26 Identities=15% Similarity=0.452 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhcCChhHhhhhHHHH
Q 034314 19 AAVGKAGGEKWKSMSEADKAPYVAKA 44 (98)
Q Consensus 19 ~eIsK~ige~Wk~ls~eeK~~Ye~~A 44 (98)
.-.++-||.+|+.|-...|+.|....
T Consensus 49 K~aG~~Ls~k~~~lF~~TR~~F~~~~ 74 (104)
T PF10045_consen 49 KRAGRDLSKKWVDLFEETRKRFLEET 74 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 46778899999999999999998753
No 77
>PRK14285 chaperone protein DnaJ; Provisional
Probab=22.37 E-value=1.7e+02 Score=23.26 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=30.3
Q ss_pred hHHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 2 EEFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 2 qe~R~~vk~enP~~~s-----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
+.+|.-.++-||+ .. ..+..+.|.+.|..|++..|+.-.+.
T Consensus 22 ~ayr~la~~~HPD-~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~ 67 (365)
T PRK14285 22 KAYRKIAIKYHPD-KNKGNKEAESIFKEATEAYEVLIDDNKRAQYDR 67 (365)
T ss_pred HHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHh
Confidence 3577788888998 42 34678889999999998776554443
No 78
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=22.25 E-value=45 Score=21.03 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHhhcCChhHhhhhHHHHH-------HHHHHHHHHHHHHhhhCCCCCC
Q 034314 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAE-------KRKVEYEKDMKNYNRRQAEGTK 67 (98)
Q Consensus 16 ~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~-------~dK~rY~~e~~~Y~~~~~~~~~ 67 (98)
+....|+..||..|+.|...-.-.+.+.-. ....+-...+..|....+.+..
T Consensus 5 ~~l~~ia~~LG~dWk~LAr~Lg~se~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~~At 63 (84)
T cd08804 5 ERLAVIADHLGFSWTELARELDFTEEQIHQIRIENPNSLQDQSHALLKYWLERDGKHAT 63 (84)
T ss_pred hHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCcccHHHHHHHHHHHHHHccCCCch
Confidence 457899999999999996665544444322 1234445566778777654333
No 79
>PRK14280 chaperone protein DnaJ; Provisional
Probab=21.70 E-value=2.1e+02 Score=22.70 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|.-.++-||+ .. ..+..+.|.+.|..|+...|+.-.+.
T Consensus 24 ayr~la~~~HpD-~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 24 AYRKLSKKYHPD-INKEEGADEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred HHHHHHHHHCcC-CCCCccHHHHHHHHHHHHHHhccHhHHHHHHh
Confidence 466667778888 42 56788899999999998776554443
No 80
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=21.48 E-value=2.6e+02 Score=22.51 Aligned_cols=45 Identities=7% Similarity=-0.071 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 034314 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63 (98)
Q Consensus 19 ~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~ 63 (98)
-+.++.....|+.|+..+|..+..++...-..+..++..-...-.
T Consensus 4 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~ 48 (443)
T cd07132 4 VRRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDL 48 (443)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 356677778999999999999999888877777777776554433
No 81
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=21.22 E-value=33 Score=21.93 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHhhcCChhH
Q 034314 16 KSVAAVGKAGGEKWKSMSEAD 36 (98)
Q Consensus 16 ~s~~eIsK~ige~Wk~ls~ee 36 (98)
+.+..|+..||..|+.|..+-
T Consensus 5 ~~l~~Ia~~LG~dW~~Lar~L 25 (84)
T cd08805 5 MKMAVIREHLGLSWAELAREL 25 (84)
T ss_pred hHHHHHHHHhcchHHHHHHHc
Confidence 568899999999999886653
No 82
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=21.21 E-value=64 Score=19.87 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=14.7
Q ss_pred hCCCCCCHHHHHHHHHHHhhcC
Q 034314 11 DHPKNKSVAAVGKAGGEKWKSM 32 (98)
Q Consensus 11 enP~~~s~~eIsK~ige~Wk~l 32 (98)
.||+ ..+..+++.|-..|+.+
T Consensus 52 kh~~-~~I~~~A~~Li~~WK~~ 72 (75)
T smart00509 52 KHKN-EEIRKLAKKLIKSWKKL 72 (75)
T ss_pred cCCc-HHHHHHHHHHHHHHHHH
Confidence 3565 56777777777888764
No 83
>PRK14295 chaperone protein DnaJ; Provisional
Probab=21.10 E-value=2.4e+02 Score=22.54 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|.-.++-||+... ..+..+.|.+.|..|+...|+...+.
T Consensus 29 ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 29 AYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred HHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 466777778998311 45788899999999999887665554
No 84
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=20.82 E-value=2.1e+02 Score=21.17 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=19.4
Q ss_pred HHhhcCChhHhhhhHHHHHHHHHHHH
Q 034314 27 EKWKSMSEADKAPYVAKAEKRKVEYE 52 (98)
Q Consensus 27 e~Wk~ls~eeK~~Ye~~A~~dK~rY~ 52 (98)
..|.+||++.|.-+.+.+...-.++.
T Consensus 214 ~~w~~L~~e~q~~l~~~~~~~~~~~~ 239 (286)
T PF03480_consen 214 DWWDSLPDEDQEALDDAADEAEARAR 239 (286)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999987766544443
No 85
>PF15581 Imm35: Immunity protein 35
Probab=20.76 E-value=1.5e+02 Score=19.51 Aligned_cols=22 Identities=9% Similarity=0.335 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHhhcCChhHhh
Q 034314 17 SVAAVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 17 s~~eIsK~ige~Wk~ls~eeK~ 38 (98)
++.-+..+|.+.|+-|+.++=.
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~ 52 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVL 52 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH
Confidence 4667888999999999988643
No 86
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=20.68 E-value=83 Score=23.24 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhh
Q 034314 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 4 ~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~ 38 (98)
+...+...| .-.-|..||...|+.||+.-+.
T Consensus 139 ~f~~F~~~~----deeK~v~Il~KTw~KMS~~g~~ 169 (185)
T PF13875_consen 139 YFEDFAAKH----DEEKIVDILRKTWRKMSERGHE 169 (185)
T ss_pred HHHHHHhcC----CHHHHHHHHHHHHHHCCHHHHH
Confidence 344555555 2446778899999999998764
No 87
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=20.60 E-value=1.6e+02 Score=20.51 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 26 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 26 ge~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
.++|..|||.+=...++-+.--..+-..-+..|...+.-
T Consensus 2 ~~~~~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~ 40 (138)
T PF14513_consen 2 AKEWVSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSL 40 (138)
T ss_dssp ----S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGG
T ss_pred ccceeccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 578999999987777776666666667777777765543
No 88
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=20.52 E-value=3.1e+02 Score=22.92 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=42.3
Q ss_pred CCCCC-C---HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 12 HPKNK-S---VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 12 nP~~~-s---~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
||.+| + ...+++.|.+....+.++.+..|...+..-..+.......++.....
T Consensus 310 DPHvWlDP~na~~~a~~Ia~~LselDP~na~~Y~~Na~ay~~eL~~Ld~~~~~~la~ 366 (479)
T TIGR03772 310 DPHLWHNVKNAIAYVEVIRDKLIEVDPRGAQAYRSNASAYIHRLERLDTYVRRTIAT 366 (479)
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67654 2 57788889999999999999999999988888877777777766553
No 89
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=20.41 E-value=3.9e+02 Score=21.73 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~ 63 (98)
+-+.++.....|..++..+|..+..++...-..+..++...-....
T Consensus 3 ~v~~a~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 48 (449)
T cd07136 3 LVEKQRAFFKTGATKDVEFRIEQLKKLKQAIKKYENEILEALKKDL 48 (449)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 4566778888999999999999999888888888888776654433
No 90
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=20.37 E-value=2.9e+02 Score=22.04 Aligned_cols=43 Identities=12% Similarity=-0.092 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 19 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 19 ~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
-+.++.....|+.++..+|..+..++...-.++..++...-..
T Consensus 4 v~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~ 46 (426)
T cd07087 4 VARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAALYA 46 (426)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456677788999999999999998888877888777765443
No 91
>PRK10455 periplasmic protein; Reviewed
Probab=20.31 E-value=2.4e+02 Score=19.99 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhcCChhHhhhhHHHH
Q 034314 19 AAVGKAGGEKWKSMSEADKAPYVAKA 44 (98)
Q Consensus 19 ~eIsK~ige~Wk~ls~eeK~~Ye~~A 44 (98)
...++.-...+..||+++|..|.+..
T Consensus 117 ~~~~~~~~qiy~vLTPEQr~q~~~~~ 142 (161)
T PRK10455 117 LAHMETQNKIYNVLTPEQKKQFNANF 142 (161)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556666789999999999988754
No 92
>PRK14294 chaperone protein DnaJ; Provisional
Probab=20.26 E-value=2.4e+02 Score=22.24 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhHhhhhHHH
Q 034314 3 EFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEADKAPYVAK 43 (98)
Q Consensus 3 e~R~~vk~enP~~~s-----~~eIsK~ige~Wk~ls~eeK~~Ye~~ 43 (98)
.+|...++-||+ .. ..+..+.|.+.|..|+...|..-.+.
T Consensus 24 ayr~la~~~HPD-~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~ 68 (366)
T PRK14294 24 SYRKLAMKYHPD-RNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQ 68 (366)
T ss_pred HHHHHHHHHCCC-CCCCchHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 467777888998 42 35778889999999998876655443
No 93
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=20.15 E-value=59 Score=21.41 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhcCChhHh
Q 034314 18 VAAVGKAGGEKWKSMSEADK 37 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK 37 (98)
+..|+.-+|..|+.+...-.
T Consensus 5 ~q~~~~nvGr~WK~laR~Lg 24 (90)
T cd08780 5 QQHFAKSVGKKWKPVGRSLQ 24 (90)
T ss_pred HHHHHHHHhHHHHHHHHHHc
Confidence 56677777777776544433
No 94
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=20.03 E-value=3.1e+02 Score=22.18 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHH
Q 034314 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58 (98)
Q Consensus 21 IsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y 58 (98)
.++.....|+.++..+|..+..++...-.++..++..-
T Consensus 46 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~ 83 (478)
T cd07085 46 AAKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELARL 83 (478)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677999999999999998877777777666654
Done!