Query 034314
Match_columns 98
No_of_seqs 132 out of 1041
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 20:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nm9_A HMG-D, high mobility gr 99.7 5.3E-18 1.8E-22 104.8 6.8 59 1-62 15-73 (73)
2 2cs1_A PMS1 protein homolog 1; 99.7 5.3E-18 1.8E-22 109.2 6.8 65 1-66 19-83 (92)
3 2co9_A Thymus high mobility gr 99.7 1.7E-17 5.9E-22 108.8 8.3 66 1-67 29-94 (102)
4 1hme_A High mobility group pro 99.7 7E-18 2.4E-22 104.8 5.6 59 1-60 18-76 (77)
5 2crj_A SWI/SNF-related matrix- 99.7 2E-17 6.9E-22 106.4 7.6 65 1-66 19-83 (92)
6 1ckt_A High mobility group 1 p 99.7 7.1E-18 2.4E-22 103.2 5.1 57 1-58 13-71 (71)
7 2eqz_A High mobility group pro 99.7 2.6E-17 8.8E-22 104.6 7.6 58 1-59 27-86 (86)
8 4a3n_A Transcription factor SO 99.7 5.7E-18 1.9E-22 103.3 4.2 58 1-59 14-71 (71)
9 2lef_A LEF-1 HMG, protein (lym 99.7 1.7E-17 6E-22 105.3 6.0 64 1-65 14-77 (86)
10 1l8y_A Upstream binding factor 99.7 3.1E-17 1.1E-21 107.0 7.0 65 1-67 16-80 (91)
11 1hry_A Human SRY; DNA, DNA-bin 99.7 1E-17 3.6E-22 103.8 4.2 59 1-60 16-74 (76)
12 1gt0_D Transcription factor SO 99.7 2.1E-17 7E-22 103.5 5.1 61 1-62 14-74 (80)
13 1wxl_A Single-strand recogniti 99.7 2.4E-17 8.1E-22 101.9 5.0 58 1-61 15-72 (73)
14 1k99_A Upstream binding factor 99.7 3.1E-17 1.1E-21 107.2 5.7 65 1-66 22-86 (99)
15 3f27_D Transcription factor SO 99.7 3.3E-17 1.1E-21 103.0 5.2 60 1-61 18-77 (83)
16 1j46_A SRY, sex-determining re 99.7 4.1E-17 1.4E-21 103.5 5.6 61 1-62 16-76 (85)
17 3u2b_C Transcription factor SO 99.7 2.9E-17 9.8E-22 102.3 4.5 60 1-61 14-73 (79)
18 2e6o_A HMG box-containing prot 99.7 2.8E-17 9.7E-22 104.8 4.3 58 1-59 29-86 (87)
19 1aab_A High mobility group pro 99.7 1.2E-17 4E-22 105.4 2.0 61 1-62 19-81 (83)
20 1wz6_A HMG-box transcription f 99.7 1.7E-17 5.7E-22 104.4 2.5 61 1-62 19-79 (82)
21 4euw_A Transcription factor SO 99.7 1E-16 3.4E-21 106.0 5.7 60 1-61 41-100 (106)
22 1i11_A Transcription factor SO 99.6 5.8E-17 2E-21 101.8 3.6 60 1-61 16-75 (81)
23 1cg7_A Protein (NON histone pr 99.6 1.4E-17 4.9E-22 107.5 0.7 61 1-62 32-92 (93)
24 2lhj_A High mobility group pro 99.6 2.8E-17 9.5E-22 106.7 2.0 61 1-62 34-96 (97)
25 2gzk_A Sex-determining region 99.6 5.9E-16 2E-20 107.4 7.4 60 1-61 100-159 (159)
26 2yrq_A High mobility group pro 99.6 8.1E-16 2.8E-20 108.2 7.4 61 1-62 113-173 (173)
27 1v63_A Nucleolar transcription 99.6 3.6E-15 1.2E-19 97.9 7.6 56 11-67 28-83 (101)
28 1wgf_A Upstream binding factor 99.6 1.2E-16 4.1E-21 102.5 0.2 56 1-57 32-87 (90)
29 3fgh_A Transcription factor A, 99.6 8.2E-16 2.8E-20 93.4 3.9 53 1-58 14-66 (67)
30 3tq6_A Transcription factor A, 99.6 7.8E-15 2.7E-19 107.1 8.0 63 1-64 21-83 (214)
31 3tmm_A Transcription factor A, 99.6 7.9E-15 2.7E-19 108.5 7.9 63 1-64 53-115 (238)
32 1v64_A Nucleolar transcription 99.6 5.2E-15 1.8E-19 98.2 6.2 58 1-63 29-86 (108)
33 2yrq_A High mobility group pro 99.5 1.3E-14 4.6E-19 101.9 6.5 62 1-62 27-89 (173)
34 2d7l_A WD repeat and HMG-box D 99.5 1.6E-14 5.4E-19 91.8 3.5 47 1-48 17-64 (81)
35 2gzk_A Sex-determining region 99.4 5.7E-14 2E-18 97.3 4.7 59 2-61 17-75 (159)
36 2cto_A Novel protein; high mob 99.4 7.4E-14 2.5E-18 91.0 1.8 52 1-55 22-76 (93)
37 2yuk_A Myeloid/lymphoid or mix 99.3 8.3E-13 2.8E-17 85.8 3.0 48 1-53 34-83 (90)
38 3tq6_A Transcription factor A, 99.3 7.5E-13 2.6E-17 96.5 2.0 60 1-65 126-185 (214)
39 3tmm_A Transcription factor A, 99.3 7.4E-13 2.5E-17 97.9 1.3 60 1-65 158-217 (238)
40 2qgu_A Probable signal peptide 86.7 0.93 3.2E-05 32.2 4.6 49 12-61 69-119 (211)
41 3mab_A Uncharacterized protein 52.0 40 0.0014 21.0 5.3 45 3-48 38-86 (93)
42 2yua_A Williams-beuren syndrom 51.6 35 0.0012 20.8 5.0 37 3-39 37-77 (99)
43 1hdj_A Human HSP40, HDJ-1; mol 44.3 44 0.0015 19.1 4.8 36 3-38 23-61 (77)
44 2o37_A Protein SIS1; HSP40, J- 40.9 40 0.0014 20.2 4.0 38 3-40 28-66 (92)
45 2och_A Hypothetical protein DN 40.5 37 0.0013 19.3 3.6 36 3-38 28-64 (73)
46 2dn9_A DNAJ homolog subfamily 35.1 37 0.0013 19.5 3.1 36 3-38 27-66 (79)
47 2ctw_A DNAJ homolog subfamily 34.5 51 0.0017 20.5 3.8 40 3-42 37-80 (109)
48 2ctp_A DNAJ homolog subfamily 33.1 53 0.0018 18.8 3.5 35 3-37 27-64 (78)
49 2l6l_A DNAJ homolog subfamily 32.2 56 0.0019 21.4 3.9 36 3-38 30-75 (155)
50 2cug_A Mkiaa0962 protein; DNAJ 32.1 63 0.0021 19.1 3.8 35 3-37 37-74 (88)
51 1wjt_A Transcription elongatio 30.8 27 0.00093 22.2 2.0 25 8-33 62-86 (103)
52 2qsa_A DNAJ homolog DNJ-2; J-d 29.1 31 0.0011 21.3 2.1 59 3-61 36-102 (109)
53 2ys8_A RAB-related GTP-binding 28.3 50 0.0017 19.8 2.9 31 4-34 48-81 (90)
54 2dmx_A DNAJ homolog subfamily 28.1 48 0.0016 19.7 2.8 35 3-37 29-68 (92)
55 2ctq_A DNAJ homolog subfamily 27.6 55 0.0019 20.3 3.1 40 3-42 40-83 (112)
56 2ph0_A Uncharacterized protein 27.4 19 0.00064 24.9 0.8 24 2-26 2-25 (174)
57 2ctr_A DNAJ homolog subfamily 26.4 76 0.0026 18.7 3.5 35 3-37 27-64 (88)
58 2lgw_A DNAJ homolog subfamily 26.2 91 0.0031 19.0 3.9 37 3-39 22-63 (99)
59 3nm8_A Tyrosinase; TYPE3 coppe 25.6 54 0.0019 24.5 3.2 26 27-52 9-36 (303)
60 3ujp_A Mn transporter subunit; 25.4 1.8E+02 0.0062 21.3 6.0 53 12-64 129-185 (307)
61 3o39_A Periplasmic protein rel 24.8 94 0.0032 19.7 3.8 27 19-45 78-104 (108)
62 1faf_A Large T antigen; J doma 24.1 35 0.0012 20.1 1.5 31 3-33 33-63 (79)
63 1iur_A KIAA0730 protein; DNAJ 23.4 1.3E+02 0.0044 18.1 6.8 31 16-46 13-43 (88)
64 1bq0_A DNAJ, HSP40; chaperone, 23.1 42 0.0014 20.5 1.8 36 3-38 23-62 (103)
65 2ej7_A HCG3 gene; HCG3 protein 22.2 53 0.0018 19.0 2.1 35 3-37 29-68 (82)
No 1
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.74 E-value=5.3e-18 Score=104.82 Aligned_cols=59 Identities=34% Similarity=0.661 Sum_probs=56.4
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|+.|+.+||+ +++++|+++||++|++|++ |++|+++|..++++|..+|+.|++++
T Consensus 15 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~kg 73 (73)
T 3nm9_A 15 LNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEANG 73 (73)
T ss_dssp HHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999 9999999999999999998 99999999999999999999999864
No 2
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=109.15 Aligned_cols=65 Identities=28% Similarity=0.433 Sum_probs=61.1
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~ 66 (98)
|+++|..|+.+||+ +++++|+++||++|++|++++|++|.++|..++++|..+|+.|+..+....
T Consensus 19 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~~~ 83 (92)
T 2cs1_A 19 VQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQMS 83 (92)
T ss_dssp HHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTCCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 57899999999999 999999999999999999999999999999999999999999998765543
No 3
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.7e-17 Score=108.77 Aligned_cols=66 Identities=23% Similarity=0.387 Sum_probs=63.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 67 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~~ 67 (98)
|+++|..|+.+||+ +++++|+++||++|++|++++|++|+++|..++++|..+|+.|+........
T Consensus 29 ~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~~~~ 94 (102)
T 2co9_A 29 FRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSY 94 (102)
T ss_dssp HHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 57899999999999 9999999999999999999999999999999999999999999999887765
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.72 E-value=7e-18 Score=104.80 Aligned_cols=59 Identities=41% Similarity=0.675 Sum_probs=56.9
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~ 60 (98)
|+++|..|+..||+ +++++|+++||++|++||+++|.+|.++|..++.+|..+|+.|+.
T Consensus 18 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 18 CSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999 999999999999999999999999999999999999999999975
No 5
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.71 E-value=2e-17 Score=106.43 Aligned_cols=65 Identities=31% Similarity=0.540 Sum_probs=60.4
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~ 66 (98)
|+++|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|+.|+.+.....
T Consensus 19 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~~~ 83 (92)
T 2crj_A 19 LNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKV 83 (92)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 57899999999999 999999999999999999999999999999999999999999997654433
No 6
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.71 E-value=7.1e-18 Score=103.19 Aligned_cols=57 Identities=37% Similarity=0.665 Sum_probs=54.0
Q ss_pred ChHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s--~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y 58 (98)
|+++|+.|+..||+ ++ |++|+++||++|++||+++|++|.++|..++++|..+|..|
T Consensus 13 ~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 13 VQTCREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp HHHHHHHHHHHCTT-CCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57899999999999 75 69999999999999999999999999999999999999877
No 7
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=104.65 Aligned_cols=58 Identities=34% Similarity=0.641 Sum_probs=55.3
Q ss_pred ChHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 1 MEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s--~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
|+++|+.|+.+||+ ++ |++|+++||++|++||+++|++|+++|..++++|..+|+.|+
T Consensus 27 ~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 27 VQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp HHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 57899999999999 65 799999999999999999999999999999999999999994
No 8
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.71 E-value=5.7e-18 Score=103.35 Aligned_cols=58 Identities=29% Similarity=0.552 Sum_probs=53.6
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
|+++|+.|+..||+ +++++|+++||++|++||+++|.+|.++|..++.+|..+|+.|+
T Consensus 14 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 14 AKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp HHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 57899999999999 99999999999999999999999999999999999999999985
No 9
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=1.7e-17 Score=105.31 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=59.5
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~ 65 (98)
|+++|+.|+.+||+ +++++||++||++|++||+++|++|.++|..++++|..+|+.|+.....+
T Consensus 14 ~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~ 77 (86)
T 2lef_A 14 MKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 77 (86)
T ss_dssp HHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTT
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC
Confidence 57899999999999 99999999999999999999999999999999999999999998654433
No 10
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.70 E-value=3.1e-17 Score=107.03 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=60.3
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 67 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~~ 67 (98)
++.+|..++..||+ ++++|+|+||++|++||+.+|+||+++|..+|++|.++|..|+.++...+.
T Consensus 16 ~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~~~ 80 (91)
T 1l8y_A 16 QQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNS 80 (91)
T ss_dssp HHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSSSS
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 47899999999999 699999999999999999999999999999999999999999988776443
No 11
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.70 E-value=1e-17 Score=103.77 Aligned_cols=59 Identities=24% Similarity=0.446 Sum_probs=56.7
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 60 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~ 60 (98)
|+++|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|+.|+-
T Consensus 16 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 16 SRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp HHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 57899999999999 999999999999999999999999999999999999999999874
No 12
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.69 E-value=2.1e-17 Score=103.47 Aligned_cols=61 Identities=25% Similarity=0.485 Sum_probs=57.9
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|..|+..||+ +++++|+++||++|++||+++|++|.++|..++++|..+|+.|+...
T Consensus 14 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 14 SRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp HHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 57899999999999 99999999999999999999999999999999999999999997543
No 13
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.69 E-value=2.4e-17 Score=101.86 Aligned_cols=58 Identities=34% Similarity=0.688 Sum_probs=55.5
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
|+++|+.|+.+||+ +++++|+++||++|++| ++|++|+++|..++++|..+|+.|+.+
T Consensus 15 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 15 LNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp HHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 57899999999999 99999999999999999 889999999999999999999999865
No 14
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.69 E-value=3.1e-17 Score=107.23 Aligned_cols=65 Identities=25% Similarity=0.434 Sum_probs=61.1
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~ 66 (98)
|+++|+.|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|..|....+.-.
T Consensus 22 ~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~~P~~~ 86 (99)
T 1k99_A 22 FMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLI 86 (99)
T ss_dssp HHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCCCCCS
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 57899999999999 999999999999999999999999999999999999999999998866543
No 15
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.68 E-value=3.3e-17 Score=103.01 Aligned_cols=60 Identities=30% Similarity=0.550 Sum_probs=57.5
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
|+++|..|+.+||+ +++++|+++||++|++|++++|.+|.++|..++++|..+|+.|+-.
T Consensus 18 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 77 (83)
T 3f27_D 18 AKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 77 (83)
T ss_dssp HHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 57899999999999 9999999999999999999999999999999999999999999754
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.68 E-value=4.1e-17 Score=103.50 Aligned_cols=61 Identities=25% Similarity=0.456 Sum_probs=58.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|..|+.+||+ +++++||++||++|++||+++|.+|.++|..++++|..+|+.|+...
T Consensus 16 ~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 16 SRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp HHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 57899999999999 99999999999999999999999999999999999999999997654
No 17
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.68 E-value=2.9e-17 Score=102.30 Aligned_cols=60 Identities=25% Similarity=0.501 Sum_probs=57.3
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
|+++|+.|+.+||+ +++++|+++||++|++||+++|.+|.++|..++++|..+|+.|+-.
T Consensus 14 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 14 SQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp HHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred HHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 57899999999999 9999999999999999999999999999999999999999998754
No 18
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-17 Score=104.77 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=56.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
|+++|+.|+.+||+ +++++|+++||++|++||+++|++|+++|..++++|.++++.|+
T Consensus 29 ~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 29 AKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp HHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999 99999999999999999999999999999999999999999885
No 19
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.67 E-value=1.2e-17 Score=105.37 Aligned_cols=61 Identities=34% Similarity=0.594 Sum_probs=57.5
Q ss_pred ChHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s--~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|++|+.+||+ ++ |++|+++||++|++||+++|++|.++|..++++|..+|+.|+...
T Consensus 19 ~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 19 VQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp HHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred HHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 57899999999999 75 699999999999999999999999999999999999999998764
No 20
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.67 E-value=1.7e-17 Score=104.45 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=58.1
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|+.|+...
T Consensus 19 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 19 CKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp HHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 57899999999999 99999999999999999999999999999999999999999998654
No 21
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=105.96 Aligned_cols=60 Identities=27% Similarity=0.518 Sum_probs=57.1
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
|+++|+.|+.+||+ +++++|+++||++|++|++++|++|.++|..++++|.++|+.|+-.
T Consensus 41 ~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 41 AQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp HHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 57899999999999 9999999999999999999999999999999999999999999754
No 22
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.65 E-value=5.8e-17 Score=101.75 Aligned_cols=60 Identities=18% Similarity=0.409 Sum_probs=55.4
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
|+++|..|+..||+ +++++||++||++|++||+++|++|.++|..++.+|..++++|+-.
T Consensus 16 ~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 16 AKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp HHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 57899999999999 9999999999999999999999999999999999999999998754
No 23
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.65 E-value=1.4e-17 Score=107.46 Aligned_cols=61 Identities=36% Similarity=0.624 Sum_probs=58.4
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|..|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|+.|+.++
T Consensus 32 ~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~~~~ 92 (93)
T 1cg7_A 32 ANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATL 92 (93)
T ss_dssp HHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 57889999999999 99999999999999999999999999999999999999999999875
No 24
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.65 E-value=2.8e-17 Score=106.67 Aligned_cols=61 Identities=31% Similarity=0.651 Sum_probs=58.0
Q ss_pred ChHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s--~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|..|+.+||+ ++ +++|+++||++|++||+++|++|+++|..++.+|..+|+.|+.+.
T Consensus 34 ~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~ 96 (97)
T 2lhj_A 34 AKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYAQRK 96 (97)
T ss_dssp HHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999 88 999999999999999999999999999999999999999998764
No 25
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.63 E-value=5.9e-16 Score=107.35 Aligned_cols=60 Identities=40% Similarity=0.679 Sum_probs=57.7
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
|+++|+.|+.+||+ +++++|+++||++|++||+++|++|.++|..++++|..+|+.|+++
T Consensus 100 ~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 159 (159)
T 2gzk_A 100 CSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 159 (159)
T ss_dssp HHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999 9999999999999999999999999999999999999999999863
No 26
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.1e-16 Score=108.21 Aligned_cols=61 Identities=39% Similarity=0.662 Sum_probs=58.5
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|+.|+.+||+ +++++|+++||++|++||+++|++|.++|..++.+|..+|+.|+.++
T Consensus 113 ~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k~ 173 (173)
T 2yrq_A 113 CSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 173 (173)
T ss_dssp HHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999 99999999999999999999999999999999999999999998763
No 27
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.59 E-value=3.6e-15 Score=97.86 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=51.2
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 034314 11 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 67 (98)
Q Consensus 11 enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~~ 67 (98)
.+|+ +++++|+|+||++|++|++++|++|+++|..++++|.++|+.|..+++....
T Consensus 28 ~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~~~ 83 (101)
T 1v63_A 28 ELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDR 83 (101)
T ss_dssp TTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTHH
T ss_pred CCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 4556 7899999999999999999999999999999999999999999999876554
No 28
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.59 E-value=1.2e-16 Score=102.54 Aligned_cols=56 Identities=27% Similarity=0.394 Sum_probs=52.8
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 57 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~ 57 (98)
|+++|+.|+.+||+ +++++|+++||++|++||+++|++|+++|..++++|.++|..
T Consensus 32 ~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 32 SEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp HHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 999999999999999999999999999999999999877654
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.59 E-value=8.2e-16 Score=93.37 Aligned_cols=53 Identities=28% Similarity=0.529 Sum_probs=49.5
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y 58 (98)
|+++|+.|+..|| ++|+++||++|++||+++|.+|+++|..++.+|.++|..|
T Consensus 14 ~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 14 VAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp HHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999987776 4999999999999999999999999999999999999988
No 30
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.56 E-value=7.8e-15 Score=107.09 Aligned_cols=63 Identities=11% Similarity=0.310 Sum_probs=59.8
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
|+++|+.|+.+||+ +++++|+++||++|++||+++|.+|+++|..++++|..+|+.|....+.
T Consensus 21 ~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp 83 (214)
T 3tq6_A 21 SKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 83 (214)
T ss_dssp HHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCH
Confidence 58999999999999 9999999999999999999999999999999999999999999876643
No 31
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.56 E-value=7.9e-15 Score=108.53 Aligned_cols=63 Identities=11% Similarity=0.310 Sum_probs=59.9
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
|+++|+.|+.+||+ +++++|+++||++|++|++++|.+|+++|..++++|..+|+.|......
T Consensus 53 ~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~p 115 (238)
T 3tmm_A 53 SKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 115 (238)
T ss_dssp HHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 58999999999999 9999999999999999999999999999999999999999999877653
No 32
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.56 E-value=5.2e-15 Score=98.24 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=54.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~ 63 (98)
|+++|+.|+ + +++++|+++||++|++|++++|++|.++|..++++|..+|+.|..++.
T Consensus 29 ~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~ 86 (108)
T 1v64_A 29 CAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLP 86 (108)
T ss_dssp HHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 567888877 6 899999999999999999999999999999999999999999999864
No 33
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=101.95 Aligned_cols=62 Identities=32% Similarity=0.580 Sum_probs=58.0
Q ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~-~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|++|+..||+. +++++|+++||++|++||+++|.+|.++|..++++|..+|+.|....
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 89 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 89 (173)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCCCC
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 588999999999994 48999999999999999999999999999999999999999998643
No 34
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=91.75 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=44.6
Q ss_pred ChHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhHhhhhHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 48 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s-~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK 48 (98)
|+++|++|+.+||+ ++ +++|+|+||++|++||+++|++|+++|..+.
T Consensus 17 ~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 17 LEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp HHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 58999999999999 88 9999999999999999999999999998873
No 35
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.45 E-value=5.7e-14 Score=97.27 Aligned_cols=59 Identities=25% Similarity=0.481 Sum_probs=55.6
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 2 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 2 qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
+..|..|+..||+ +++++||++||++|++||+++|.+|.++|..++++|..+|+.|...
T Consensus 17 ~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 17 RDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp HHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 5678889999999 9999999999999999999999999999999999999999999653
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.4e-14 Score=91.03 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=49.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHH---HHHhhcCChhHhhhhHHHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAG---GEKWKSMSEADKAPYVAKAEKRKVEYEKDM 55 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~i---ge~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~ 55 (98)
|+++|++|+.+ + +++++|+++| |++|++|++++|++|+++|..+|++|.+.+
T Consensus 22 ~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 22 VQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp HHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 57899999999 6 8899999999 999999999999999999999999999876
No 37
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.30 E-value=8.3e-13 Score=85.75 Aligned_cols=48 Identities=23% Similarity=0.438 Sum_probs=45.9
Q ss_pred ChHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 53 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s--~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~ 53 (98)
|+++|++|+.+||+ ++ +++|+ ++|++|++++|+||+++|..+|++|+.
T Consensus 34 ~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 34 TNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp HHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999 99 99999 999999999999999999999999985
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.28 E-value=7.5e-13 Score=96.54 Aligned_cols=60 Identities=27% Similarity=0.475 Sum_probs=51.6
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~ 65 (98)
|+++|+.|+..|| ++|+++||++|++||+++|++|+.+|..++++|..+|+.|+.+++..
T Consensus 126 ~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~~~~ 185 (214)
T 3tq6_A 126 VAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEV 185 (214)
T ss_dssp HHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4566666655554 49999999999999999999999999999999999999999987443
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.27 E-value=7.4e-13 Score=97.91 Aligned_cols=60 Identities=27% Similarity=0.484 Sum_probs=52.1
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~ 65 (98)
|+++|+.|+..||+ +|+++||++|++|++++|++|+++|..++++|..+|+.|+.+++..
T Consensus 158 ~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~~~~ 217 (238)
T 3tmm_A 158 VAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEV 217 (238)
T ss_dssp HHHHTTTSCCSSHH-----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 45667666655554 9999999999999999999999999999999999999999987543
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=86.71 E-value=0.93 Score=32.25 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHH-HHHHhhcCChhHhhhhHHHHHH-HHHHHHHHHHHHhhh
Q 034314 12 HPKNKSVAAVGKA-GGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNRR 61 (98)
Q Consensus 12 nP~~~s~~eIsK~-ige~Wk~ls~eeK~~Ye~~A~~-dK~rY~~e~~~Y~~~ 61 (98)
.|- +.+..|++. ||..|+.+|+++|+.|.+.... ...-|-..+..|...
T Consensus 69 ~p~-~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 69 VPR-ADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp GGG-BCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred hhh-cCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 355 678888876 4899999999999999997554 667788888888743
No 41
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=52.00 E-value=40 Score=21.01 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH----HHHhhcCChhHhhhhHHHHHHHH
Q 034314 3 EFREQYKKDHPKNKSVAAVGKAG----GEKWKSMSEADKAPYVAKAEKRK 48 (98)
Q Consensus 3 e~R~~vk~enP~~~s~~eIsK~i----ge~Wk~ls~eeK~~Ye~~A~~dK 48 (98)
+.+.+|++.+|+ .++.-+-... |..|..|+.++|+...+-+...|
T Consensus 38 ~ay~rLk~~~~~-~~~~~L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~lk 86 (93)
T 3mab_A 38 EAFLRIWENDSS-VCMSELYALEGAVQGIRWHGLDEAKKIELKKFHQSLE 86 (93)
T ss_dssp HHHHHHHHHCTT-CCHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCcHHHCCHHHHHHHHHHHHHhh
Confidence 456788888888 7765554444 45799999999986655554444
No 42
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.58 E-value=35 Score=20.75 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhh
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAP 39 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~ 39 (98)
.+|..++.-||+... ..+..+.|.+-|..|+...++.
T Consensus 37 ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 37 AYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp HHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 467777888998322 4678889999999999876643
No 43
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=44.29 E-value=44 Score=19.15 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhHhh
Q 034314 3 EFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 3 e~R~~vk~enP~~~---s~~eIsK~ige~Wk~ls~eeK~ 38 (98)
.+|..++.-||+.. ...+..+.|.+-|..|+...+.
T Consensus 23 ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 23 AYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp HHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 35666777799832 3578888999999999887654
No 44
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=40.92 E-value=40 Score=20.20 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhHhhhh
Q 034314 3 EFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPY 40 (98)
Q Consensus 3 e~R~~vk~enP~~~-s~~eIsK~ige~Wk~ls~eeK~~Y 40 (98)
.+|..++.-||+.. ...+..+.|.+-|..|+...++.-
T Consensus 28 ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~ 66 (92)
T 2o37_A 28 GYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREI 66 (92)
T ss_dssp HHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 46777888899832 356788899999999988765443
No 45
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=40.54 E-value=37 Score=19.33 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhHhh
Q 034314 3 EFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 3 e~R~~vk~enP~~~-s~~eIsK~ige~Wk~ls~eeK~ 38 (98)
.+|...+.-||+.. ...+..+.|.+-|..|+...++
T Consensus 28 ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 28 AYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp HHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 45666777899832 2257788888888888876654
No 46
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.10 E-value=37 Score=19.52 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhh
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~ 38 (98)
.+|..++.-||+... ..+..+.|.+-|..|+...+.
T Consensus 27 ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 66 (79)
T 2dn9_A 27 AYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66 (79)
T ss_dssp HHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 456667777887321 346677777777777665543
No 47
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.53 E-value=51 Score=20.47 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVA 42 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~ 42 (98)
.+|...+.-||+... ..+..+.|.+.|..|+...+..-.+
T Consensus 37 aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 37 SYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp HHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 467777888998322 2578889999999998776654444
No 48
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.06 E-value=53 Score=18.83 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhHh
Q 034314 3 EFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEADK 37 (98)
Q Consensus 3 e~R~~vk~enP~~~---s~~eIsK~ige~Wk~ls~eeK 37 (98)
.+|..++.-||+.. ...+..+.|.+.|..|+...+
T Consensus 27 ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 64 (78)
T 2ctp_A 27 AYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64 (78)
T ss_dssp HHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 35566666788832 245677777788887776654
No 49
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=32.23 E-value=56 Score=21.35 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCCC----------HHHHHHHHHHHhhcCChhHhh
Q 034314 3 EFREQYKKDHPKNKS----------VAAVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 3 e~R~~vk~enP~~~s----------~~eIsK~ige~Wk~ls~eeK~ 38 (98)
.+|...+.-||+... ..+..+.|.+.|..|+...++
T Consensus 30 aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R 75 (155)
T 2l6l_A 30 KYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETK 75 (155)
T ss_dssp HHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 467778888998422 247889999999999976553
No 50
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=32.12 E-value=63 Score=19.08 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhHh
Q 034314 3 EFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEADK 37 (98)
Q Consensus 3 e~R~~vk~enP~~~---s~~eIsK~ige~Wk~ls~eeK 37 (98)
.+|..++.-||+.. ...+..+.|.+-|..|+...+
T Consensus 37 ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 74 (88)
T 2cug_A 37 AYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74 (88)
T ss_dssp HHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHH
Confidence 35666777788732 256777788888888776554
No 51
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=30.79 E-value=27 Score=22.15 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=14.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCC
Q 034314 8 YKKDHPKNKSVAAVGKAGGEKWKSMS 33 (98)
Q Consensus 8 vk~enP~~~s~~eIsK~ige~Wk~ls 33 (98)
|++.+|+ ..+..+++.|=..|+.+=
T Consensus 62 LrKh~~~-~~V~~lAk~Lv~~WK~~v 86 (103)
T 1wjt_A 62 VRKHCSD-KEVVSLAKVLIKNWKRLL 86 (103)
T ss_dssp HHHHCCC-SHHHHHHHHHHHHHHHHT
T ss_pred HHccCCc-HHHHHHHHHHHHHHHHHH
Confidence 3333455 556666666666666543
No 52
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=29.06 E-value=31 Score=21.30 Aligned_cols=59 Identities=12% Similarity=0.242 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCCCC-------HHHHHHHHHHHhhcCChhHh-hhhHHHHHHHHHHHHHHHHHHhhh
Q 034314 3 EFREQYKKDHPKNKS-------VAAVGKAGGEKWKSMSEADK-APYVAKAEKRKVEYEKDMKNYNRR 61 (98)
Q Consensus 3 e~R~~vk~enP~~~s-------~~eIsK~ige~Wk~ls~eeK-~~Ye~~A~~dK~rY~~e~~~Y~~~ 61 (98)
.+|...+.-||+... ..+..+.|.+.|..|+...+ ..|-..-...-..|..-+.-|+..
T Consensus 36 aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~~~~~~~~~~~~~~~ 102 (109)
T 2qsa_A 36 AYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYYQYYRLR 102 (109)
T ss_dssp HHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 467777888998322 35788899999999986654 455444333333444444444443
No 53
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.34 E-value=50 Score=19.78 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=14.5
Q ss_pred HHHHHHHhCCCCC---CHHHHHHHHHHHhhcCCh
Q 034314 4 FREQYKKDHPKNK---SVAAVGKAGGEKWKSMSE 34 (98)
Q Consensus 4 ~R~~vk~enP~~~---s~~eIsK~ige~Wk~ls~ 34 (98)
+|...+.-||+.. ...+..+.|.+-|..|+.
T Consensus 48 Yr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d 81 (90)
T 2ys8_A 48 YRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLK 81 (90)
T ss_dssp HHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCC
Confidence 4555556666622 233444444444444443
No 54
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.11 E-value=48 Score=19.70 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhHh
Q 034314 3 EFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEADK 37 (98)
Q Consensus 3 e~R~~vk~enP~~~s-----~~eIsK~ige~Wk~ls~eeK 37 (98)
.+|..++.-||+... ..+..+.|.+-|..|+...+
T Consensus 29 ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 68 (92)
T 2dmx_A 29 AYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68 (92)
T ss_dssp HHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHH
Confidence 466777788998321 24567778888888776654
No 55
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.62 E-value=55 Score=20.34 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhhhhHH
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVA 42 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~~Ye~ 42 (98)
.+|...+.-||+... ..+..+.|.+.|..|+...++.-.+
T Consensus 40 ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 83 (112)
T 2ctq_A 40 EFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYD 83 (112)
T ss_dssp HHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 466777778998322 3678889999999998776554333
No 56
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=27.37 E-value=19 Score=24.93 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=19.4
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHH
Q 034314 2 EEFREQYKKDHPKNKSVAAVGKAGG 26 (98)
Q Consensus 2 qe~R~~vk~enP~~~s~~eIsK~ig 26 (98)
.....+++++||+ +...+|++.+|
T Consensus 2 ~~~~~~~~~~~P~-~~~~dla~~l~ 25 (174)
T 2ph0_A 2 TMTLNELLATNPD-GTLEDIAGKYN 25 (174)
T ss_dssp CCCHHHHHHTCCC-SCHHHHHHHTT
T ss_pred hHHHHHHHHHCcC-chHHHHHHHcC
Confidence 3456788999999 89999998765
No 57
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.45 E-value=76 Score=18.70 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCChhHh
Q 034314 3 EFREQYKKDHPKNKS---VAAVGKAGGEKWKSMSEADK 37 (98)
Q Consensus 3 e~R~~vk~enP~~~s---~~eIsK~ige~Wk~ls~eeK 37 (98)
.+|..++.-||+... ..+..+.|.+.|..|+...+
T Consensus 27 ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~ 64 (88)
T 2ctr_A 27 AFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANR 64 (88)
T ss_dssp HHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHH
Confidence 466777778898322 35667777888887776654
No 58
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=26.16 E-value=91 Score=19.00 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhHhhh
Q 034314 3 EFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEADKAP 39 (98)
Q Consensus 3 e~R~~vk~enP~~~s-----~~eIsK~ige~Wk~ls~eeK~~ 39 (98)
.+|...+.-||+... ..+..+.|.+-|..|+...++.
T Consensus 22 aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~ 63 (99)
T 2lgw_A 22 AYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63 (99)
T ss_dssp HHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 466777778998321 3567888889999888776543
No 59
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=25.56 E-value=54 Score=24.48 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=20.6
Q ss_pred HHhhcCChhHhhhhHHHHHHHHH--HHH
Q 034314 27 EKWKSMSEADKAPYVAKAEKRKV--EYE 52 (98)
Q Consensus 27 e~Wk~ls~eeK~~Ye~~A~~dK~--rY~ 52 (98)
+.|+.||..+|..|...-..++. +|.
T Consensus 9 ke~~~Ls~~Er~~yi~Av~~l~~~~~yd 36 (303)
T 3nm8_A 9 KNVLHLTDTEKRDFVRTVLILKEKGIYD 36 (303)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred cchHHCCHHHHHHHHHHHHHHHhcChHH
Confidence 56999999999999997666554 454
No 60
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=25.36 E-value=1.8e+02 Score=21.27 Aligned_cols=53 Identities=9% Similarity=0.044 Sum_probs=42.9
Q ss_pred CCCCC-C---HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 12 HPKNK-S---VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 12 nP~~~-s---~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
+|.+| + ...+++.|...-..+.++-+..|+..+.....+.......|+.....
T Consensus 129 DPHvWldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~ 185 (307)
T 3ujp_A 129 NPHAWMSPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQ 185 (307)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67754 2 46678888888888999999999999999888888888888776553
No 61
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=24.83 E-value=94 Score=19.74 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhcCChhHhhhhHHHHH
Q 034314 19 AAVGKAGGEKWKSMSEADKAPYVAKAE 45 (98)
Q Consensus 19 ~eIsK~ige~Wk~ls~eeK~~Ye~~A~ 45 (98)
-+..++-..++.-|||+.|..|.+...
T Consensus 78 v~~~r~~~qmy~lLTPEQk~q~~~~~~ 104 (108)
T 3o39_A 78 LAHMETQNKIYNILTPEQKKQFNANFE 104 (108)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344566678899999999999987543
No 62
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=24.07 E-value=35 Score=20.13 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 034314 3 EFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 33 (98)
Q Consensus 3 e~R~~vk~enP~~~s~~eIsK~ige~Wk~ls 33 (98)
.+|.-.+.-||+.....+..+.|.+.|..|+
T Consensus 33 aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~ 63 (79)
T 1faf_A 33 AYKQQSLLLHPDKGGSHALMQELNSLWGTFK 63 (79)
T ss_dssp HHHHHHHHSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCCHHHHHHHHHHHHHHh
Confidence 3555566667762223334444444444443
No 63
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=23.42 E-value=1.3e+02 Score=18.07 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHhhcCChhHhhhhHHHHHH
Q 034314 16 KSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 46 (98)
Q Consensus 16 ~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~ 46 (98)
.+..++..+||-.|..-..+.|+.|..+|..
T Consensus 13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~ 43 (88)
T 1iur_A 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLK 43 (88)
T ss_dssp SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999888889888888754
No 64
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=23.10 E-value=42 Score=20.53 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhHhh
Q 034314 3 EFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 3 e~R~~vk~enP~~~s----~~eIsK~ige~Wk~ls~eeK~ 38 (98)
.+|..++.-||+... ..+..+.|.+-|..|+...++
T Consensus 23 ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R 62 (103)
T 1bq0_A 23 AYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62 (103)
T ss_dssp HHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHH
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence 356667777898322 357888999999999887654
No 65
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.22 E-value=53 Score=18.98 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhHh
Q 034314 3 EFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEADK 37 (98)
Q Consensus 3 e~R~~vk~enP~~~s-----~~eIsK~ige~Wk~ls~eeK 37 (98)
.+|..++.-||+... ..+..+.|.+-|..|+...+
T Consensus 29 ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 68 (82)
T 2ej7_A 29 AYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68 (82)
T ss_dssp HHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTH
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHH
Confidence 355666667887321 23567777788888776654
Done!