Query 034314
Match_columns 98
No_of_seqs 132 out of 1041
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 20:53:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034314.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034314hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hsma_ a.21.1.1 (A:) High mob 99.7 2.4E-18 1.7E-22 106.5 6.7 65 1-66 14-78 (79)
2 d1i11a_ a.21.1.1 (A:) Sox-5 {M 99.7 5.2E-18 3.8E-22 103.3 3.6 57 1-58 14-70 (70)
3 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 99.7 1.5E-17 1.1E-21 103.9 5.8 61 1-62 14-74 (80)
4 d2lefa_ a.21.1.1 (A:) Lymphoid 99.7 2.4E-17 1.8E-21 103.8 6.2 65 1-66 14-78 (86)
5 d1j46a_ a.21.1.1 (A:) SRY {Hum 99.7 2.3E-17 1.7E-21 103.7 6.1 61 1-62 16-76 (85)
6 d1lwma_ a.21.1.1 (A:) NHP6a {B 99.7 1.3E-16 9.6E-21 101.6 7.8 62 1-63 32-93 (93)
7 d1qrva_ a.21.1.1 (A:) HMG-D {D 99.6 1.3E-16 9.4E-21 97.5 6.6 59 1-62 15-73 (73)
8 d1ckta_ a.21.1.1 (A:) High mob 99.6 2.2E-16 1.6E-20 95.7 5.9 58 1-58 13-71 (71)
9 d1k99a_ a.21.1.1 (A:) Nucleola 99.6 2E-15 1.4E-19 95.2 5.7 64 1-65 22-85 (91)
10 d1v63a_ a.21.1.1 (A:) Nucleola 99.5 2.1E-14 1.6E-18 91.8 6.6 64 1-67 20-83 (101)
11 d1wgfa_ a.21.1.1 (A:) Nucleola 99.4 5.7E-14 4.1E-18 88.2 3.7 53 1-54 32-84 (90)
12 d1v64a_ a.21.1.1 (A:) Nucleola 99.4 5.4E-13 3.9E-17 86.4 8.3 57 6-63 30-86 (108)
13 d1l8ya_ a.21.1.1 (A:) Nucleola 96.8 0.0011 8.2E-08 40.1 4.7 46 21-66 33-78 (84)
14 d1iura_ a.2.3.1 (A:) Hypotheti 39.5 19 0.0014 20.6 3.9 29 17-45 14-42 (88)
15 d1fada_ a.77.1.2 (A:) FADD (Mo 36.1 6.1 0.00044 22.5 1.1 17 17-33 12-28 (95)
16 d1i1ga1 a.4.5.32 (A:2-61) LprA 34.8 14 0.00099 19.5 2.4 19 8-27 11-29 (60)
17 d2cg4a1 a.4.5.32 (A:4-66) Regu 34.5 14 0.001 19.6 2.5 18 8-26 13-30 (63)
18 d1v65a_ a.212.1.1 (A:) hypothe 34.4 15 0.0011 20.3 2.6 28 16-43 8-36 (64)
19 d1eo0a_ a.48.3.1 (A:) Transcri 33.7 7.4 0.00054 22.3 1.2 21 11-32 55-75 (77)
20 d1pq4a_ c.92.2.2 (A:) Periplas 28.9 50 0.0036 21.9 5.2 54 12-65 131-188 (289)
21 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 28.8 42 0.003 18.1 4.8 36 3-38 23-61 (77)
22 d2cyya1 a.4.5.32 (A:5-64) Puta 28.6 18 0.0013 18.9 2.2 18 8-26 11-28 (60)
23 d1fi6a_ a.39.1.6 (A:) Reps1 {M 28.4 13 0.00093 20.9 1.6 15 30-44 1-15 (92)
24 d1wnda_ c.82.1.1 (A:) Putative 25.6 55 0.004 23.3 5.2 38 21-58 47-84 (474)
25 d1fafa_ a.2.3.1 (A:) Large T a 25.2 15 0.0011 20.7 1.5 32 4-35 34-65 (79)
26 d2j0pa1 e.62.1.1 (A:4-341) Hem 24.7 17 0.0012 26.2 2.0 24 2-26 3-26 (338)
27 d1xvla1 c.92.2.2 (A:49-327) Mn 24.2 69 0.005 20.9 5.2 47 18-64 114-160 (279)
28 d2cfxa1 a.4.5.32 (A:1-63) Tran 23.8 27 0.002 18.3 2.4 18 8-26 13-30 (63)
29 d1o20a_ c.82.1.1 (A:) Gamma-gl 22.6 63 0.0046 22.4 4.9 38 20-57 8-45 (414)
30 d2hq2a1 e.62.1.1 (A:1-337) Hem 21.7 26 0.0019 25.1 2.6 23 3-26 5-27 (337)
31 d1a4sa_ c.82.1.1 (A:) Aldehyde 21.2 74 0.0054 22.9 5.2 38 22-59 67-104 (503)
32 d1wjza_ a.2.3.1 (A:) CSL-type 21.1 19 0.0014 20.6 1.4 20 19-38 62-81 (94)
33 d1ez4a2 d.162.1.1 (A:163-334) 20.7 63 0.0046 19.4 4.1 28 31-58 142-169 (171)
No 1
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=99.73 E-value=2.4e-18 Score=106.54 Aligned_cols=65 Identities=37% Similarity=0.620 Sum_probs=61.4
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~ 66 (98)
|+++|.+|+.+||+ +++++|+++||.+|++||+++|.+|.++|..++.+|..+|+.|+.++...+
T Consensus 14 ~~~~r~~i~~~~p~-~~~~ei~k~~~~~W~~ls~~eK~~y~~~a~~~k~~Y~~e~~~y~~k~~~~a 78 (79)
T d1hsma_ 14 CSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDA 78 (79)
T ss_dssp HHHHHHHHHHHCTT-CCTTTHHHHHHHHHHTSCSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHhhHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 57899999999999 999999999999999999999999999999999999999999998876554
No 2
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.69 E-value=5.2e-18 Score=103.30 Aligned_cols=57 Identities=19% Similarity=0.421 Sum_probs=54.6
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y 58 (98)
|+++|+.|+.+||+ +++++||++||.+|++||+++|++|.++|..++++|.+++++|
T Consensus 14 ~~~~r~~i~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~~~~~~p~Y 70 (70)
T d1i11a_ 14 AKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDY 70 (70)
T ss_dssp HHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 57899999999999 9999999999999999999999999999999999999888776
No 3
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.69 E-value=1.5e-17 Score=103.85 Aligned_cols=61 Identities=25% Similarity=0.485 Sum_probs=58.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|++|+.+||+ +++++||++||++|++||+++|++|+.+|..++++|..+|+.|+.+.
T Consensus 14 ~~~~r~~~~~~~p~-~~~~eisk~~g~~W~~l~~eeK~~y~~~A~~~k~~y~~~~p~Yk~~p 74 (80)
T d1gt0d_ 14 SRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp HHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHCcCCHHHHHHHHHHHHHHHHHHHHHCccccCCC
Confidence 57899999999999 99999999999999999999999999999999999999999997553
No 4
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.68 E-value=2.4e-17 Score=103.80 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=59.9
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~ 66 (98)
|+++|++|+.+||+ +++++||++||.+|++||+++|.+|.++|..++++|...+++|+.....+.
T Consensus 14 ~~~~r~~~~~~~P~-~~~~~Isk~lg~~Wk~ls~~eK~~y~~~A~~~k~~~~~~~p~yk~~~~~~~ 78 (86)
T d2lefa_ 14 MKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK 78 (86)
T ss_dssp HHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTTT
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCCCC
Confidence 47899999999999 999999999999999999999999999999999999999999986544443
No 5
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.68 E-value=2.3e-17 Score=103.69 Aligned_cols=61 Identities=25% Similarity=0.456 Sum_probs=58.4
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|.+|+.+||+ +++++||++||.+|++||+++|.+|+++|..++.+|..+|+.|+.+.
T Consensus 16 ~~~~r~~i~~~~p~-~~~~eisk~ig~~W~~L~~eeK~~y~~~A~~~k~~y~~~~~~yk~~p 76 (85)
T d1j46a_ 16 SRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp HHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred HHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhHHhccCC
Confidence 57899999999999 99999999999999999999999999999999999999999998654
No 6
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.66 E-value=1.3e-16 Score=101.56 Aligned_cols=62 Identities=37% Similarity=0.627 Sum_probs=59.1
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~ 63 (98)
|+++|..|+.+||+ +++++|++.||.+|++||+++|.+|.++|..++.+|..+|..|+..++
T Consensus 32 ~~e~r~~ik~~~p~-~~~~ei~k~l~~~W~~ls~~eK~~y~~~a~~~k~~y~~e~~~y~~~l~ 93 (93)
T d1lwma_ 32 ANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93 (93)
T ss_dssp HHHHHHHHHHHCTT-SCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 57899999999999 999999999999999999999999999999999999999999998753
No 7
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Probab=99.65 E-value=1.3e-16 Score=97.49 Aligned_cols=59 Identities=36% Similarity=0.672 Sum_probs=55.5
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 62 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~ 62 (98)
|+++|+.|+.+||+ +++++|+++||.+|++|+ +|++|.++|..++.+|..+|+.|+.+|
T Consensus 15 ~~~~r~~~k~~~p~-~~~~eisk~l~~~Wk~~~--eK~~y~~~a~~~k~~y~~~~~~y~~~g 73 (73)
T d1qrva_ 15 LNSARESIKRENPG-IKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAVKEFEANG 73 (73)
T ss_dssp HHHHHHHHHHTSTT-CCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHhcChh--HHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 57899999999999 999999999999999986 599999999999999999999998875
No 8
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.63 E-value=2.2e-16 Score=95.65 Aligned_cols=58 Identities=34% Similarity=0.637 Sum_probs=54.0
Q ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58 (98)
Q Consensus 1 ~qe~R~~vk~enP~~-~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y 58 (98)
|+++|+.|+.+||+. +++++|+++||.+|++||+++|.+|.++|..++++|..+|+.|
T Consensus 13 ~~~~r~~~k~~~p~~~~~~~ei~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~Y 71 (71)
T d1ckta_ 13 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578999999999972 4689999999999999999999999999999999999999887
No 9
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56 E-value=2e-15 Score=95.22 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=60.2
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~ 65 (98)
|+++|..|+..||+ +++++|+++||.+|+.||+++|.+|.++|..++.+|...|..|....+..
T Consensus 22 ~~~~r~~~~~~~p~-~~~~ev~k~l~~~W~~ls~~eK~~y~~~a~~~~~~y~~~~~~y~~~~pe~ 85 (91)
T d1k99a_ 22 FMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDL 85 (91)
T ss_dssp HHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCCCCC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 57899999999999 99999999999999999999999999999999999999999999876543
No 10
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.49 E-value=2.1e-14 Score=91.78 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=56.7
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 67 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~~ 67 (98)
|+++|..++..| +++++|+++||.+|+.||+++|++|.++|..++.+|..+|..|.........
T Consensus 20 ~~e~r~~~~~~~---~~~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~~y~~e~~~y~~~~~~~~~ 83 (101)
T d1v63a_ 20 SQELLSNGELNH---LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDR 83 (101)
T ss_dssp HHHHHHHCTTTT---SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTHH
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 578888887555 4599999999999999999999999999999999999999999998766543
No 11
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.41 E-value=5.7e-14 Score=88.20 Aligned_cols=53 Identities=28% Similarity=0.438 Sum_probs=49.7
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHH
Q 034314 1 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 54 (98)
Q Consensus 1 ~qe~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e 54 (98)
|+++|.+|+..||+ +++++|+++||.+|+.|++++|.+|.++|..++++|.++
T Consensus 32 ~~e~r~~~~~~~p~-~~~~ei~k~l~~~W~~Ls~~eK~~Y~~~A~~~k~~y~~~ 84 (90)
T d1wgfa_ 32 SEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERK 84 (90)
T ss_dssp HHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 999999999999999999999999999999999888643
No 12
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.40 E-value=5.4e-13 Score=86.40 Aligned_cols=57 Identities=16% Similarity=0.319 Sum_probs=52.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 034314 6 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 63 (98)
Q Consensus 6 ~~vk~enP~~~s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~ 63 (98)
..++.++|+ +++.+|+++||.+|++||+++|.+|.++|..++.+|..+|+.|....+
T Consensus 30 ~~~r~~~~~-~~~~e~~k~ig~~W~~Ls~~eK~~Y~~~a~~~k~~Y~~~~~~y~~~~~ 86 (108)
T d1v64a_ 30 AELMANMKD-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLP 86 (108)
T ss_dssp HHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHccC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 345567899 999999999999999999999999999999999999999999998764
No 13
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.76 E-value=0.0011 Score=40.05 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=39.3
Q ss_pred HHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 034314 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGT 66 (98)
Q Consensus 21 IsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~~ 66 (98)
..+.+-..|++|...+|-+|..+|.++..||.+++...+...+...
T Consensus 33 aqkaMeatW~~meKkEki~wikkaaedqkryerel~emr~~~a~~~ 78 (84)
T d1l8ya_ 33 ALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATN 78 (84)
T ss_dssp HHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSSS
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCcC
Confidence 4456677899999999999999999999999999998887655444
No 14
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.49 E-value=19 Score=20.60 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhhcCChhHhhhhHHHHH
Q 034314 17 SVAAVGKAGGEKWKSMSEADKAPYVAKAE 45 (98)
Q Consensus 17 s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~ 45 (98)
.+.++.++|+..|..-..+.|+.|..++.
T Consensus 14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~ 42 (88)
T d1iura_ 14 ILKEVTSVVEQAWKLPESERKKIIRRLYL 42 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999998888777664
No 15
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.11 E-value=6.1 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHhhcCC
Q 034314 17 SVAAVGKAGGEKWKSMS 33 (98)
Q Consensus 17 s~~eIsK~ige~Wk~ls 33 (98)
.|.-|++.||..|+.|-
T Consensus 12 ~f~~ia~~lg~~Wk~La 28 (95)
T d1fada_ 12 AFDIVCDNVGRDWKRLA 28 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 47889999999999764
No 16
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=34.80 E-value=14 Score=19.48 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=15.4
Q ss_pred HHHhCCCCCCHHHHHHHHHH
Q 034314 8 YKKDHPKNKSVAAVGKAGGE 27 (98)
Q Consensus 8 vk~enP~~~s~~eIsK~ige 27 (98)
+...||- +++.+|++.+|-
T Consensus 11 ~L~~n~r-~s~~~lA~~~gl 29 (60)
T d1i1ga1 11 ILEKDAR-TPFTEIAKKLGI 29 (60)
T ss_dssp HHHHCTT-CCHHHHHHHHTS
T ss_pred HHHHcCC-CCHHHHHHHHCc
Confidence 4567888 899999999874
No 17
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=34.51 E-value=14 Score=19.56 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=14.9
Q ss_pred HHHhCCCCCCHHHHHHHHH
Q 034314 8 YKKDHPKNKSVAAVGKAGG 26 (98)
Q Consensus 8 vk~enP~~~s~~eIsK~ig 26 (98)
+...||. .++.+|++.+|
T Consensus 13 ~L~~~~r-~s~~eiA~~l~ 30 (63)
T d2cg4a1 13 ALMGNAR-TAYAELAKQFG 30 (63)
T ss_dssp HHHHCTT-SCHHHHHHHHT
T ss_pred HHHHcCC-CCHHHHHHHHC
Confidence 4567888 89999999986
No 18
>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.39 E-value=15 Score=20.34 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=19.8
Q ss_pred CCHHHHHHHHH-HHhhcCChhHhhhhHHH
Q 034314 16 KSVAAVGKAGG-EKWKSMSEADKAPYVAK 43 (98)
Q Consensus 16 ~s~~eIsK~ig-e~Wk~ls~eeK~~Ye~~ 43 (98)
++|.+|+--++ +.|..|.+.+|.-|.+.
T Consensus 8 VtFeDVaV~Fs~EEW~~Ld~~Qk~LyrdV 36 (64)
T d1v65a_ 8 VTYDDVHMNFTEEEWDLLDSSQKRLYEEV 36 (64)
T ss_dssp CCCCCCTTCCCHHHHHTSCHHHHHHHHHH
T ss_pred EEEeEEEEEcCHHHHhCcCHHHHHHHHHh
Confidence 34555554444 68999999999877663
No 19
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.72 E-value=7.4 Score=22.25 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=14.4
Q ss_pred hCCCCCCHHHHHHHHHHHhhcC
Q 034314 11 DHPKNKSVAAVGKAGGEKWKSM 32 (98)
Q Consensus 11 enP~~~s~~eIsK~ige~Wk~l 32 (98)
.||+ ..++.+++.|-..|+.+
T Consensus 55 kh~~-~~v~~lAk~Lv~~WK~~ 75 (77)
T d1eo0a_ 55 KSTN-VEISKLVKKMISSWKDA 75 (77)
T ss_dssp SSSC-TTHHHHHHHHHHHHHHH
T ss_pred cCCc-HHHHHHHHHHHHHHHHh
Confidence 4665 56777777777777753
No 20
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=28.89 E-value=50 Score=21.92 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=44.6
Q ss_pred CCCCC----CHHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCCC
Q 034314 12 HPKNK----SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 65 (98)
Q Consensus 12 nP~~~----s~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~~ 65 (98)
+|..| ....++..|+.....+.++-+..|...+.....+.......|+.....-
T Consensus 131 DPH~Wldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~~ 188 (289)
T d1pq4a_ 131 DPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPL 188 (289)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceeecccccHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHhccc
Confidence 56643 2577889999999999999999999999999999988888888776543
No 21
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.84 E-value=42 Score=18.09 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCC---CCHHHHHHHHHHHhhcCChhHhh
Q 034314 3 EFREQYKKDHPKN---KSVAAVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 3 e~R~~vk~enP~~---~s~~eIsK~ige~Wk~ls~eeK~ 38 (98)
.+|.-++.-||+. ....+..+.|.+.|..|+...++
T Consensus 23 ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R 61 (77)
T d1hdja_ 23 AYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp HHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHH
Confidence 4566677778872 14567788889999999877664
No 22
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=28.55 E-value=18 Score=18.87 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=14.5
Q ss_pred HHHhCCCCCCHHHHHHHHH
Q 034314 8 YKKDHPKNKSVAAVGKAGG 26 (98)
Q Consensus 8 vk~enP~~~s~~eIsK~ig 26 (98)
+...||- .++.+|++.+|
T Consensus 11 ~L~~n~r-~s~~eiA~~l~ 28 (60)
T d2cyya1 11 ILQNDGK-APLREISKITG 28 (60)
T ss_dssp HHHHCTT-CCHHHHHHHHC
T ss_pred HHHHcCC-CCHHHHHHHHC
Confidence 4566888 89999999885
No 23
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.39 E-value=13 Score=20.87 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=9.8
Q ss_pred hcCChhHhhhhHHHH
Q 034314 30 KSMSEADKAPYVAKA 44 (98)
Q Consensus 30 k~ls~eeK~~Ye~~A 44 (98)
=.||++++..|...-
T Consensus 1 w~ls~ee~~~y~~~F 15 (92)
T d1fi6a_ 1 WKITDEQRQYYVNQF 15 (92)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 067888887776643
No 24
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]}
Probab=25.59 E-value=55 Score=23.27 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHH
Q 034314 21 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 58 (98)
Q Consensus 21 IsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y 58 (98)
.++.....|+.++..+|..+..+....-.++..++..-
T Consensus 47 aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~ 84 (474)
T d1wnda_ 47 AADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAEL 84 (474)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34555578999999999999998888777777776654
No 25
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=25.23 E-value=15 Score=20.71 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh
Q 034314 4 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 35 (98)
Q Consensus 4 ~R~~vk~enP~~~s~~eIsK~ige~Wk~ls~e 35 (98)
+|..++.-||+.-...+..+.|.+-|..|...
T Consensus 34 Yr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~ 65 (79)
T d1fafa_ 34 YKQQSLLLHPDKGGSHALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCCCHHHHHHHHHHHHHHCCH
Confidence 45555555665223344444555555544443
No 26
>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia enterocolitica [TaxId: 630]}
Probab=24.65 E-value=17 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=20.0
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHH
Q 034314 2 EEFREQYKKDHPKNKSVAAVGKAGG 26 (98)
Q Consensus 2 qe~R~~vk~enP~~~s~~eIsK~ig 26 (98)
.+.+.+++++||+ +...+|++.||
T Consensus 3 ~~r~~~l~~~~P~-~r~rd~A~~Lg 26 (338)
T d2j0pa1 3 YEQYLQAKADNPG-KYARDLATLMG 26 (338)
T ss_dssp HHHHHHHHHTCTT-CCHHHHHHHTT
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHhC
Confidence 3567889999999 89999988765
No 27
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=24.20 E-value=69 Score=20.94 Aligned_cols=47 Identities=6% Similarity=-0.006 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 034314 18 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 64 (98)
Q Consensus 18 ~~eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~~~~~~ 64 (98)
...++..|+.....+.++-+..|...+.....+.......|+.....
T Consensus 114 ~~~~a~~Ia~~L~~~dP~~~~~y~~n~~~~~~~l~~l~~~~~~~l~~ 160 (279)
T d1xvla1 114 ALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQ 160 (279)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhChhhhhHHHHHHHHHhhhhhhhHHHHHHHHhh
Confidence 57788889999999999999999999999999999888888887654
No 28
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=23.84 E-value=27 Score=18.34 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=14.8
Q ss_pred HHHhCCCCCCHHHHHHHHH
Q 034314 8 YKKDHPKNKSVAAVGKAGG 26 (98)
Q Consensus 8 vk~enP~~~s~~eIsK~ig 26 (98)
+-..||- .++.+|++.+|
T Consensus 13 ~L~~n~r-~s~~~iA~~lg 30 (63)
T d2cfxa1 13 ELKKDSR-LSMRELGRKIK 30 (63)
T ss_dssp HHHHCSC-CCHHHHHHHHT
T ss_pred HHHHcCC-CCHHHHHHHHC
Confidence 3456888 89999999997
No 29
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}
Probab=22.60 E-value=63 Score=22.36 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHH
Q 034314 20 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 57 (98)
Q Consensus 20 eIsK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~ 57 (98)
.-++.....|+.+|..+|..+..++...-..++.++..
T Consensus 8 ~~A~~Af~~w~~~s~~eR~~iL~k~a~~l~~~~~eia~ 45 (414)
T d1o20a_ 8 KKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILE 45 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34666777899999999999999887777777766543
No 30
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli O157:H7 [TaxId: 83334]}
Probab=21.71 E-value=26 Score=25.10 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 034314 3 EFREQYKKDHPKNKSVAAVGKAGG 26 (98)
Q Consensus 3 e~R~~vk~enP~~~s~~eIsK~ig 26 (98)
+.+.+++++||+ +...+|++.||
T Consensus 5 qr~~~l~~e~P~-~r~rd~A~~Lg 27 (337)
T d2hq2a1 5 TRWLELKEQNPG-KYARDIAGLMN 27 (337)
T ss_dssp HHHHHHHHHSTT-CCHHHHHHHTT
T ss_pred HHHHHHHHHCCC-CCHHHHHHHhC
Confidence 456789999999 89999988775
No 31
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]}
Probab=21.17 E-value=74 Score=22.88 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCChhHhhhhHHHHHHHHHHHHHHHHHHh
Q 034314 22 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 59 (98)
Q Consensus 22 sK~ige~Wk~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y~ 59 (98)
++.....|+.|+..+|..+...+...-..+..++...-
T Consensus 67 A~~A~~~W~~~s~~eR~~iL~~~a~~L~~~~eela~~~ 104 (503)
T d1a4sa_ 67 AQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLE 104 (503)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44445689999999999999887777667766666543
No 32
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.15 E-value=19 Score=20.64 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhcCChhHhh
Q 034314 19 AAVGKAGGEKWKSMSEADKA 38 (98)
Q Consensus 19 ~eIsK~ige~Wk~ls~eeK~ 38 (98)
.++.+.|.+-|..|+..+++
T Consensus 62 ~~~f~~I~~Ay~vL~d~~~R 81 (94)
T d1wjza_ 62 MQKFIEIDQAWKILGNEETK 81 (94)
T ss_dssp HHHHHHHHHHHHHHSSSSHH
T ss_pred HHHHHHHHHHHHHhCCHHHH
Confidence 34567777788888755443
No 33
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}
Probab=20.68 E-value=63 Score=19.42 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=24.0
Q ss_pred cCChhHhhhhHHHHHHHHHHHHHHHHHH
Q 034314 31 SMSEADKAPYVAKAEKRKVEYEKDMKNY 58 (98)
Q Consensus 31 ~ls~eeK~~Ye~~A~~dK~rY~~e~~~Y 58 (98)
.|++.++..+..-+...++.+...++..
T Consensus 142 ~Ls~~E~~~l~~s~~~l~~~i~~~l~~l 169 (171)
T d1ez4a2 142 PLSADELKKMQDSAATLKKVLNDGLAEL 169 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999998888777654
Done!