BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034317
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 196 bits (499), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/98 (96%), Positives = 97/98 (98%)
Query: 1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 135 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 194
Query: 61 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
FVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 195 FVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70
+D GL+ DPE F++ + E+ + R AM G +++ G
Sbjct: 46 WDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 196 bits (499), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/98 (96%), Positives = 97/98 (98%)
Query: 1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF
Sbjct: 135 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 194
Query: 61 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
FVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 195 FVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70
+D GL+ DPE F++ + E+ + R AM G +++ G
Sbjct: 46 WDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNG 89
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 194 bits (493), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/98 (96%), Positives = 96/98 (97%)
Query: 1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF
Sbjct: 135 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 194
Query: 61 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
FVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct: 195 FVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 232
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70
+D GL+ DPE FA+ + E+ + R AM G ++ G
Sbjct: 46 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 89
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 14 LGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
LG +P YPGG F +PLG D ++ +LK+KE+KNGRLAM ++ G+FVQA+VTG GP
Sbjct: 195 LGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPY 254
Query: 73 ENLADHLADPVNNN 86
+NL DHL DPV+NN
Sbjct: 255 QNLLDHLTDPVHNN 268
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 22 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 80
YPGG+FDPLG + DP+ ELKVKEIKNGRLA+ + GF V Q+ G GPLENLA HLA
Sbjct: 167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 81 DPVNNN 86
DP +NN
Sbjct: 227 DPWHNN 232
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 62
FDPLGL + P K E+ + R AM ++ G V
Sbjct: 68 FDPLGLGEVPANLERYKESELIHCRWAMLAVPGILV 103
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 22 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 80
YPGG+FDPLG + DP+ ELKVKEIKNGRLA+ + GF V Q+ G GPLENLA HLA
Sbjct: 119 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 178
Query: 81 DPVNNN 86
DP +NN
Sbjct: 179 DPWHNN 184
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 62
FDPLGL + P K E+ + R AM ++ G V
Sbjct: 20 FDPLGLGEVPANLERYKESELIHCRWAMLAVPGILV 55
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 47/66 (71%)
Query: 21 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 80
LYPGG+FDPLGLA DPE L++ EIK+ RLAM GF VQA VTGKGPL N HL+
Sbjct: 172 LYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS 231
Query: 81 DPVNNN 86
DP++
Sbjct: 232 DPLHTT 237
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 22 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 80
YPGG+FDPLG + DP+ ELKVKEIKNGRLA+ + GF V Q+ G GPLENLA HLA
Sbjct: 107 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 166
Query: 81 DPVN 84
DP +
Sbjct: 167 DPWH 170
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 62
FDPLGL + P K E+ + R AM ++ G V
Sbjct: 8 FDPLGLGEVPANLERYKESELIHCRWAMLAVPGILV 43
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 19 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 77
+P YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL D
Sbjct: 103 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 162
Query: 78 HLA 80
HLA
Sbjct: 163 HLA 165
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 18 TDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 75
TD YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL
Sbjct: 98 TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 157
Query: 76 ADHLADP 82
HLADP
Sbjct: 158 FAHLADP 164
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 18 TDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 75
TD YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL
Sbjct: 118 TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 177
Query: 76 ADHLADP 82
HLADP
Sbjct: 178 FAHLADP 184
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 74
FDPLGL+ DPE+ E+ + R AM G F+ +T G L
Sbjct: 14 FDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNT 61
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 13 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
P GEV YPGG F+PL A EA K KEI NGRLAM + GF +Q VTGKGP
Sbjct: 94 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPF 146
Query: 73 ENLADHLADPVNNN 86
+NL H++DP +N
Sbjct: 147 DNLLQHISDPWHNT 160
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 18 TDPLYPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 75
TD YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL
Sbjct: 191 TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 250
Query: 76 -ADHLADP 82
A HLADP
Sbjct: 251 FAAHLADP 258
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 80
FDPLGL DPE+ E+ + R AM G F+ +T G L + + A
Sbjct: 87 FDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTA 140
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 19 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 74
+P YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +N
Sbjct: 116 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 13 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
P GEV YPGG F+PL A EA K KEI NGRL M + GF +Q VTGKGP
Sbjct: 98 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPF 149
Query: 73 ENLADHLADPVNNN 86
+NL H++DP +N
Sbjct: 150 DNLLQHISDPWHNT 163
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 32 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70
LA+DPE E+ NGR AM + G + + T G
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 39
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 13 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72
P GEV YPGG F+PL A EA K KEI NGRL M + GF +Q VTGKGP
Sbjct: 178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPF 229
Query: 73 ENLADHLADPVNNN 86
+NL H++DP +N
Sbjct: 230 DNLLQHISDPWHNT 243
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 15 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70
G +T L FDPLGLA+DPE E+ NGR AM + G + + T G
Sbjct: 64 GYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 119
>pdb|3DEP|B Chain B, Structural Basis For Specific Substrate Recognition By
The Chloroplast Signal Recognition Particle Protein
Cpsrp43
Length = 12
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 22 YPGGSFDPLGLA 33
YPGGSFDPLGLA
Sbjct: 1 YPGGSFDPLGLA 12
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 46 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 97
E NGR F F+ Q V G + +L +H N A+ Y+ + +PG
Sbjct: 76 EHSNGR------FSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPG 121
>pdb|2FM9|A Chain A, Structure Of Salmonella Sipa Residues 48-264
Length = 215
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 33 ADDPEAF-------AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 85
+D PEA AE + IK+G L S FG ++ + LENL L D + N
Sbjct: 59 SDSPEAKTLLMKVGAEYTAQIIKDG-LKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKN 117
Query: 86 NA----WAYATNFV 95
N +TN V
Sbjct: 118 NTGGELSKLSTNLV 131
>pdb|2FM8|C Chain C, Crystal Structure Of The Salmonella Secretion Chaperone
Invb In Complex With Sipa
Length = 240
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 33 ADDPEAF-------AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 85
+D PEA AE + IK+G L S FG ++ + LENL L D + N
Sbjct: 85 SDSPEAKTLLMKVGAEYTAQIIKDG-LKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKN 143
Query: 86 NA----WAYATNFV 95
N +TN V
Sbjct: 144 NTGGELSKLSTNLV 157
>pdb|3DR0|A Chain A, Structure Of Reduced Cytochrome C6 From Synechococcus
Sp. Pcc 7002
pdb|3DR0|B Chain B, Structure Of Reduced Cytochrome C6 From Synechococcus
Sp. Pcc 7002
pdb|3DR0|C Chain C, Structure Of Reduced Cytochrome C6 From Synechococcus
Sp. Pcc 7002
Length = 93
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 31 GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW 88
G D ++ E ++ NG+ AM + G A + N+A ++AD NN W
Sbjct: 42 GYKDGSKSLEEAVAYQVTNGQGAMPAFGGRLSDA------DIANVAAYIADQAENNKW 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,506,475
Number of Sequences: 62578
Number of extensions: 133316
Number of successful extensions: 336
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 36
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)