Query 034317
Match_columns 98
No_of_seqs 113 out of 1010
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 1.2E-30 2.7E-35 199.8 6.8 98 1-98 165-262 (262)
2 PLN00048 photosystem I light h 99.9 8.7E-28 1.9E-32 184.1 7.6 92 1-92 152-260 (262)
3 PLN00147 light-harvesting comp 99.9 1.4E-27 3.1E-32 182.1 6.6 93 1-93 142-251 (252)
4 PLN00098 light-harvesting comp 99.9 6.3E-27 1.4E-31 179.7 6.8 93 1-93 158-266 (267)
5 PLN00097 photosystem I light h 99.9 7.4E-27 1.6E-31 177.5 6.0 88 1-88 141-243 (244)
6 PLN00187 photosystem II light- 99.9 2E-26 4.2E-31 178.4 6.7 89 1-92 196-285 (286)
7 PLN00101 Photosystem I light-h 99.9 3.5E-26 7.5E-31 174.3 4.7 87 1-91 149-249 (250)
8 PLN00099 light-harvesting comp 99.9 1.4E-25 3E-30 170.5 6.1 87 1-90 148-235 (243)
9 PLN00171 photosystem light-ha 99.9 3.4E-24 7.4E-29 168.0 7.8 90 1-90 225-321 (324)
10 PLN00100 light-harvesting comp 99.9 4.1E-24 9E-29 162.6 5.4 83 1-90 125-208 (246)
11 PLN00170 photosystem II light- 99.8 1.8E-21 3.9E-26 148.8 5.5 74 1-75 150-253 (255)
12 PLN00098 light-harvesting comp 99.8 5.2E-20 1.1E-24 141.6 6.7 60 14-73 71-131 (267)
13 PLN00101 Photosystem I light-h 99.8 9.7E-20 2.1E-24 139.0 6.5 59 14-72 62-121 (250)
14 PLN00089 fucoxanthin-chlorophy 99.8 1.7E-19 3.6E-24 134.6 4.7 55 19-73 152-208 (209)
15 PLN00097 photosystem I light h 99.8 4E-19 8.6E-24 135.3 6.7 58 14-71 53-111 (244)
16 PLN00147 light-harvesting comp 99.8 4.1E-19 8.8E-24 135.7 6.3 58 14-71 54-112 (252)
17 PLN00171 photosystem light-ha 99.8 5.2E-19 1.1E-23 138.9 5.9 58 14-71 119-177 (324)
18 PLN00025 photosystem II light 99.8 7.8E-19 1.7E-23 134.8 6.0 57 14-70 62-119 (262)
19 PLN00187 photosystem II light- 99.8 6.7E-19 1.5E-23 136.5 5.3 56 14-69 61-160 (286)
20 PLN00170 photosystem II light- 99.8 1.3E-18 2.9E-23 133.1 6.7 64 7-70 52-123 (255)
21 PLN00099 light-harvesting comp 99.7 2E-18 4.3E-23 131.4 5.9 55 14-68 53-108 (243)
22 PLN00100 light-harvesting comp 99.7 2.4E-18 5.3E-23 131.1 6.2 56 14-69 44-100 (246)
23 PLN00048 photosystem I light h 99.7 1.5E-17 3.2E-22 127.7 5.9 61 13-73 50-116 (262)
24 PF00504 Chloroa_b-bind: Chlor 99.7 3.3E-17 7.2E-22 115.5 5.7 54 15-69 2-56 (156)
25 PF00504 Chloroa_b-bind: Chlor 99.7 1.9E-17 4.1E-22 116.7 1.8 65 1-65 88-156 (156)
26 PLN00089 fucoxanthin-chlorophy 99.7 2.1E-16 4.5E-21 118.0 6.7 56 15-71 47-104 (209)
27 PLN00120 fucoxanthin-chlorophy 99.6 1.6E-16 3.4E-21 118.1 4.9 68 1-72 127-198 (202)
28 PLN00120 fucoxanthin-chlorophy 99.5 4.6E-15 1E-19 110.3 2.9 52 21-72 41-95 (202)
29 PHA02337 putative high light i 98.6 5E-08 1.1E-12 54.5 3.3 28 44-71 4-31 (35)
30 PLN00084 photosystem II subuni 98.2 1.6E-06 3.4E-11 64.1 3.3 40 37-76 130-170 (214)
31 PLN00014 light-harvesting-like 98.1 2.4E-06 5.3E-11 65.2 3.6 37 42-78 159-195 (250)
32 PLN02449 ferrochelatase 70.8 3.6 7.8E-05 34.6 2.5 22 52-73 463-484 (485)
33 PHA00003 B internal scaffoldin 55.9 26 0.00056 24.3 4.1 41 17-60 39-80 (120)
34 PHA00649 hypothetical protein 34.6 84 0.0018 20.2 3.7 37 28-65 24-68 (83)
35 PF02304 Phage_B: Scaffold pro 29.4 35 0.00077 23.6 1.4 41 18-61 37-78 (117)
36 PHA03159 hypothetical protein; 23.7 66 0.0014 23.1 2.0 16 50-65 74-90 (160)
37 PF12055 DUF3536: Domain of un 21.9 1.2E+02 0.0027 23.9 3.4 37 36-73 69-105 (285)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.96 E-value=1.2e-30 Score=199.79 Aligned_cols=98 Identities=93% Similarity=1.509 Sum_probs=91.2
Q ss_pred CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhhc
Q 034317 1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 80 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~~ 80 (98)
||++|.+||.+.+..+..+..||||+|||+||++|+++++++|.+|||||||||+|++|+++|+++||++|++||.+|++
T Consensus 165 mg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hla 244 (262)
T PLN00025 165 MGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 244 (262)
T ss_pred HHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhc
Confidence 68999999988655555577899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCCC
Q 034317 81 DPVNNNAWAYATNFVPGK 98 (98)
Q Consensus 81 ~P~~~~~~~~~~~~~p~~ 98 (98)
||.++|.+++++++.|++
T Consensus 245 dP~~~n~~~~~~~~~~~~ 262 (262)
T PLN00025 245 DPVANNAWAYATNFVPGK 262 (262)
T ss_pred CccccchhhhhhhcCCCC
Confidence 999999999988899875
No 2
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.95 E-value=8.7e-28 Score=184.09 Aligned_cols=92 Identities=51% Similarity=0.879 Sum_probs=81.5
Q ss_pred CceeeeeeccCCCCC------------C----CCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 034317 1 MGAVEGYRIAGGPLG------------E----VTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 63 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~------------~----~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~ 63 (98)
||++|.+||++...+ . ..+..||||+ |||+||++|+++++++|++|||||||||+|++|+++|
T Consensus 152 mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q 231 (262)
T PLN00048 152 MGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQ 231 (262)
T ss_pred hhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhh
Confidence 799999999873110 0 0145799998 9999999999999999999999999999999999999
Q ss_pred HHhcCCCchhhhHHhhcCCCCCCcccccc
Q 034317 64 AIVTGKGPLENLADHLADPVNNNAWAYAT 92 (98)
Q Consensus 64 e~vtg~gpl~~l~~~~~~P~~~~~~~~~~ 92 (98)
+++||++|++||.+|++||+++|.+++..
T Consensus 232 ~~~tg~gp~~~L~~hladP~~~ni~~~~~ 260 (262)
T PLN00048 232 ALVTGVGPFQNLLDHLADPVNNNVLTNLK 260 (262)
T ss_pred hhhcCCCHHHHHHHHhcCccccccccccc
Confidence 99999999999999999999999998754
No 3
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.94 E-value=1.4e-27 Score=182.10 Aligned_cols=93 Identities=49% Similarity=0.724 Sum_probs=82.0
Q ss_pred CceeeeeeccCCCC----------------CCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 034317 1 MGAVEGYRIAGGPL----------------GEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 63 (98)
Q Consensus 1 ~g~~E~~r~~~~~~----------------~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~ 63 (98)
||++|.+||.+... .+..+..||||+ |||+||++|+++++++|++|||||||||+|++|+++|
T Consensus 142 mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q 221 (252)
T PLN00147 142 MGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQ 221 (252)
T ss_pred HHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68999999876421 122456799999 9999999999999999999999999999999999999
Q ss_pred HHhcCCCchhhhHHhhcCCCCCCccccccc
Q 034317 64 AIVTGKGPLENLADHLADPVNNNAWAYATN 93 (98)
Q Consensus 64 e~vtg~gpl~~l~~~~~~P~~~~~~~~~~~ 93 (98)
+++|+++|+++|.+|++||+++|.+++.++
T Consensus 222 ~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 222 ASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred HHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 999999999999999999999999887543
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.94 E-value=6.3e-27 Score=179.73 Aligned_cols=93 Identities=48% Similarity=0.718 Sum_probs=81.5
Q ss_pred CceeeeeeccCCCC--------------CCCCCCCCCCcC-ccCCCCCC-CHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 034317 1 MGAVEGYRIAGGPL--------------GEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 64 (98)
Q Consensus 1 ~g~~E~~r~~~~~~--------------~~~~~~~~PGd~-fDPlgl~~-~~~~~~~~r~~ElknGRlAMla~~g~~~~e 64 (98)
||++|.+||++... ....+..||||+ |||++|.+ |+++++++|.+|||||||||+|++|+++|+
T Consensus 158 mG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~ 237 (267)
T PLN00098 158 MGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA 237 (267)
T ss_pred HHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 78999999987421 011245799999 99999974 899999999999999999999999999999
Q ss_pred HhcCCCchhhhHHhhcCCCCCCccccccc
Q 034317 65 IVTGKGPLENLADHLADPVNNNAWAYATN 93 (98)
Q Consensus 65 ~vtg~gpl~~l~~~~~~P~~~~~~~~~~~ 93 (98)
.+||++|++||.+|++||.++|.+++.+.
T Consensus 238 ~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 238 VYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred hhcCCChHHHHHHHhcCcccccchhhccC
Confidence 99999999999999999999999987653
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.93 E-value=7.4e-27 Score=177.46 Aligned_cols=88 Identities=47% Similarity=0.643 Sum_probs=78.2
Q ss_pred CceeeeeeccCCCC---------------CCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 034317 1 MGAVEGYRIAGGPL---------------GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 65 (98)
Q Consensus 1 ~g~~E~~r~~~~~~---------------~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~ 65 (98)
||++|.+||.+... .+..|..|||+.|||+||++|+++++++|.+|||||||||+|++|+++|+.
T Consensus 141 mg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~ 220 (244)
T PLN00097 141 FNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAI 220 (244)
T ss_pred HHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence 78999999987421 011244699999999999999999999999999999999999999999999
Q ss_pred hcCCCchhhhHHhhcCCCCCCcc
Q 034317 66 VTGKGPLENLADHLADPVNNNAW 88 (98)
Q Consensus 66 vtg~gpl~~l~~~~~~P~~~~~~ 88 (98)
+||++|++||.+|++||.++|.+
T Consensus 221 vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 221 QTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred ccCCCHHHHHHHHhcCccccccC
Confidence 99999999999999999999876
No 6
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.93 E-value=2e-26 Score=178.37 Aligned_cols=89 Identities=49% Similarity=0.753 Sum_probs=80.9
Q ss_pred CceeeeeeccCCCCCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhh
Q 034317 1 MGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 79 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~ 79 (98)
||++|.+|+.+.. ..+..||||+ |||+||++|+++++++|.+|||||||||+|++|+++|+.+|+++|++||.+|+
T Consensus 196 mG~~E~~R~~~~~---~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hl 272 (286)
T PLN00187 196 IGYIEFQRNAELD---PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL 272 (286)
T ss_pred HHHHHhhhccCCC---CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 7899999997632 2356799997 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccc
Q 034317 80 ADPVNNNAWAYAT 92 (98)
Q Consensus 80 ~~P~~~~~~~~~~ 92 (98)
+||.++|.++...
T Consensus 273 adp~~~n~~~~~~ 285 (286)
T PLN00187 273 SDPLHTTIIDTFS 285 (286)
T ss_pred cCcccccHHHhcc
Confidence 9999999887643
No 7
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.92 E-value=3.5e-26 Score=174.32 Aligned_cols=87 Identities=45% Similarity=0.649 Sum_probs=74.7
Q ss_pred CceeeeeeccCCC----CC----------CCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 034317 1 MGAVEGYRIAGGP----LG----------EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 66 (98)
Q Consensus 1 ~g~~E~~r~~~~~----~~----------~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~v 66 (98)
||++|.+||++.. .. ...|..|||+.||||||+++ ++++++|||||||||+|++|+++|+.+
T Consensus 149 mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~v 224 (250)
T PLN00101 149 FHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNV 224 (250)
T ss_pred HHHHHHHHhhcccCCCcccccccccccccCCccccCCCCccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehc
Confidence 6899999998642 00 11255799999999999865 368999999999999999999999999
Q ss_pred cCCCchhhhHHhhcCCCCCCccccc
Q 034317 67 TGKGPLENLADHLADPVNNNAWAYA 91 (98)
Q Consensus 67 tg~gpl~~l~~~~~~P~~~~~~~~~ 91 (98)
||++|++||.+|++||.++|.+++.
T Consensus 225 TG~gPi~nL~~hladP~~~ni~~~~ 249 (250)
T PLN00101 225 TGKGPFENLLQHLSDPWHNTIVQTL 249 (250)
T ss_pred cCCChHHHHHHHhcCCcccchhhhc
Confidence 9999999999999999999988753
No 8
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.92 E-value=1.4e-25 Score=170.46 Aligned_cols=87 Identities=53% Similarity=0.838 Sum_probs=76.2
Q ss_pred CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HhcCCCchhhhHHhh
Q 034317 1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHL 79 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e-~vtg~gpl~~l~~~~ 79 (98)
||++|.+|+... ...+..||||.|||+||++|+++++++|.+|||||||||+|++|+++|+ .+||++|+++|.+|+
T Consensus 148 ig~~E~~r~~~~---~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hl 224 (243)
T PLN00099 148 IAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 224 (243)
T ss_pred HHHHHHHhhccC---CCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHh
Confidence 578898887432 1124679999999999999999999999999999999999999999998 579999999999999
Q ss_pred cCCCCCCcccc
Q 034317 80 ADPVNNNAWAY 90 (98)
Q Consensus 80 ~~P~~~~~~~~ 90 (98)
+||.++|..+-
T Consensus 225 adp~~~N~~~~ 235 (243)
T PLN00099 225 ADPWHNNIGDI 235 (243)
T ss_pred cCCccCceeee
Confidence 99999997763
No 9
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.90 E-value=3.4e-24 Score=168.02 Aligned_cols=90 Identities=58% Similarity=0.910 Sum_probs=78.9
Q ss_pred CceeeeeeccCCCC----CC--CCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh
Q 034317 1 MGAVEGYRIAGGPL----GE--VTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 73 (98)
Q Consensus 1 ~g~~E~~r~~~~~~----~~--~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~ 73 (98)
|+++|.+||.+... +. ..|..|||++ |||+||++|+++++++|.+|||||||||+|++|+++|+.+||++|++
T Consensus 225 m~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPle 304 (324)
T PLN00171 225 MVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQ 304 (324)
T ss_pred hhhhhheeeccccccCCccccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHH
Confidence 56789999987421 11 1245688887 99999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcCCCCCCcccc
Q 034317 74 NLADHLADPVNNNAWAY 90 (98)
Q Consensus 74 ~l~~~~~~P~~~~~~~~ 90 (98)
++.+|++||.++|.+++
T Consensus 305 nL~~hladP~~~Ni~~~ 321 (324)
T PLN00171 305 NLVDHLSDPLHNNLLSS 321 (324)
T ss_pred HHHHHhcCccccchHHH
Confidence 99999999999998875
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.89 E-value=4.1e-24 Score=162.58 Aligned_cols=83 Identities=41% Similarity=0.582 Sum_probs=72.9
Q ss_pred CceeeeeeccCCCCCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhh
Q 034317 1 MGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 79 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~ 79 (98)
||++|.+||.+.... .+...|||+ |||+||++ +++|.+|||||||||+|++|+++|+.+||++|+++|.+|+
T Consensus 125 ~g~~E~~r~~~~~~~--g~~~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hl 197 (246)
T PLN00100 125 MAVLEAARYRGFMKT--GESGVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHM 197 (246)
T ss_pred HHHHhhhcccccccc--cccCCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhc
Confidence 689999999865321 235578999 99999963 5789999999999999999999999999999999999999
Q ss_pred cCCCCCCcccc
Q 034317 80 ADPVNNNAWAY 90 (98)
Q Consensus 80 ~~P~~~~~~~~ 90 (98)
++|.++|.+++
T Consensus 198 adP~~~ni~~~ 208 (246)
T PLN00100 198 ANPGHVNIFTS 208 (246)
T ss_pred cCCcccccccC
Confidence 99999999875
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.84 E-value=1.8e-21 Score=148.85 Aligned_cols=74 Identities=47% Similarity=0.630 Sum_probs=63.4
Q ss_pred CceeeeeeccCCCCC--------------------CCCCCCCCCcC-ccCCCCCC---------CHHHHHHHHHHHHhcc
Q 034317 1 MGAVEGYRIAGGPLG--------------------EVTDPLYPGGS-FDPLGLAD---------DPEAFAELKVKEIKNG 50 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~--------------------~~~~~~~PGd~-fDPlgl~~---------~~~~~~~~r~~ElknG 50 (98)
||++|.+||++...+ ...+..|||+. |||+||++ |+++++++|.+|||||
T Consensus 150 mg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnG 229 (255)
T PLN00170 150 MGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHA 229 (255)
T ss_pred hhhhhheeeccccCCcccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhh
Confidence 899999999874211 11245699987 99999985 7899999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhhh
Q 034317 51 RLAMFSMFGFFVQAIVTGKGPLENL 75 (98)
Q Consensus 51 RlAMla~~g~~~~e~vtg~gpl~~l 75 (98)
||||+|++|+++|. .||++|+++|
T Consensus 230 RLAMlA~lGf~~Qa-~~g~~p~~~l 253 (255)
T PLN00170 230 RLAMVAMLIFYFEA-GQGKTPLGAL 253 (255)
T ss_pred HHHHHHHHhHheee-ccCCCchhhh
Confidence 99999999999999 7999999876
No 12
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.81 E-value=5.2e-20 Score=141.59 Aligned_cols=60 Identities=33% Similarity=0.522 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 73 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~ 73 (98)
.++++|+++|||+ |||+||++|+++++++|++||+||||||+|++|+++||++++.++++
T Consensus 71 ~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 71 PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred CCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 5889999999999 99999999999999999999999999999999999999998877654
No 13
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.80 E-value=9.7e-20 Score=139.01 Aligned_cols=59 Identities=36% Similarity=0.598 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl 72 (98)
.++++|+++|||+ |||+||++|+++++++|++||+||||||||++|++++|++++.+++
T Consensus 62 ~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 62 SPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 5789999999999 9999999999999999999999999999999999999999988775
No 14
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.78 E-value=1.7e-19 Score=134.64 Aligned_cols=55 Identities=38% Similarity=0.463 Sum_probs=50.7
Q ss_pred CCCCCCcC-ccCCCCC-CCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh
Q 034317 19 DPLYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 73 (98)
Q Consensus 19 ~~~~PGd~-fDPlgl~-~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~ 73 (98)
++++|||+ |||++|. +|+++++++|.+|||||||||+|++|+++|+.+||+++++
T Consensus 152 ~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 152 FDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred CCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 35799999 9999995 6899999999999999999999999999999999998754
No 15
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.78 E-value=4e-19 Score=135.26 Aligned_cols=58 Identities=29% Similarity=0.425 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 71 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gp 71 (98)
.++++|+++|||+ |||+||++|+++++++|++||+||||||||++|+++||++++.+.
T Consensus 53 ~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 53 AAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 5889999999999 999999999999999999999999999999999999999988764
No 16
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.77 E-value=4.1e-19 Score=135.74 Aligned_cols=58 Identities=29% Similarity=0.448 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 71 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gp 71 (98)
.++++|+++|||+ |||+||++|+++++++|++|||||||||+|++|+++||+++..+.
T Consensus 54 ~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 54 PPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred CCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 5789999999999 999999999999999999999999999999999999999876653
No 17
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.77 E-value=5.2e-19 Score=138.91 Aligned_cols=58 Identities=29% Similarity=0.422 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 71 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gp 71 (98)
.++++|+++|||+ |||+||++|+++++++|++|||||||||||++|++++|++++.+.
T Consensus 119 ~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 119 YPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 5789999999999 999999999999999999999999999999999999999876654
No 18
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.76 E-value=7.8e-19 Score=134.80 Aligned_cols=57 Identities=28% Similarity=0.507 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~g 70 (98)
.++++|+++|||+ |||+||++|+++++++|++||+||||||||++|++++|++++.+
T Consensus 62 ~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 62 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred CcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 4678999999999 99999999999999999999999999999999999999988654
No 19
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.76 E-value=6.7e-19 Score=136.51 Aligned_cols=56 Identities=30% Similarity=0.456 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHH-------------------------------------------HHHHHHHHHhc
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEA-------------------------------------------FAELKVKEIKN 49 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~-------------------------------------------~~~~r~~Elkn 49 (98)
.++++||++|||| |||+||+++|+. ++|+|++||+|
T Consensus 61 ~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiH 140 (286)
T PLN00187 61 APEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIH 140 (286)
T ss_pred CcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhh
Confidence 5889999999999 999999998885 59999999999
Q ss_pred chhHHHHHHHHHHHHHhcCC
Q 034317 50 GRLAMFSMFGFFVQAIVTGK 69 (98)
Q Consensus 50 GRlAMla~~g~~~~e~vtg~ 69 (98)
|||||||++|++++|++++.
T Consensus 141 GRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 141 GRWAMLATLGALSVEALTGV 160 (286)
T ss_pred hHHHHHHhhchhhHHhccCC
Confidence 99999999999999998653
No 20
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.76 E-value=1.3e-18 Score=133.06 Aligned_cols=64 Identities=33% Similarity=0.435 Sum_probs=57.6
Q ss_pred eeccCCC-------CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC
Q 034317 7 YRIAGGP-------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70 (98)
Q Consensus 7 ~r~~~~~-------~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~g 70 (98)
++|.+.. .++++++++|||+ |||++|++|+++++++|++||+||||||+|++|+++++++++..
T Consensus 52 k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~ 123 (255)
T PLN00170 52 KSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 123 (255)
T ss_pred ccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCC
Confidence 4676643 4788999999999 99999999999999999999999999999999999999988754
No 21
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.74 E-value=2e-18 Score=131.37 Aligned_cols=55 Identities=31% Similarity=0.415 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 68 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg 68 (98)
.++++|++.|||+ |||++|++++++++++|++|||||||||||++|++++|.++.
T Consensus 53 ~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 53 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 6889999999999 999999999999999999999999999999999999999754
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.74 E-value=2.4e-18 Score=131.06 Aligned_cols=56 Identities=32% Similarity=0.441 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 69 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~ 69 (98)
.++++|+++|||+ |||++|++++++++++|++||+||||||+|++|++++|+++.+
T Consensus 44 ~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P 100 (246)
T PLN00100 44 APKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLP 100 (246)
T ss_pred CCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhccc
Confidence 4778999999999 9999999999999999999999999999999999999997654
No 23
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.70 E-value=1.5e-17 Score=127.75 Aligned_cols=61 Identities=33% Similarity=0.417 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCcC-ccCCCCCCCH-----HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh
Q 034317 13 PLGEVTDPLYPGGS-FDPLGLADDP-----EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 73 (98)
Q Consensus 13 ~~~~~~~~~~PGd~-fDPlgl~~~~-----~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~ 73 (98)
..++|+|+++|||+ |||+||++.. .+.+++|++||+||||||||++|++++|++++.+.+.
T Consensus 50 ~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 50 QSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred CCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 36889999999999 9999997421 2457899999999999999999999999998877654
No 24
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.69 E-value=3.3e-17 Score=115.49 Aligned_cols=54 Identities=44% Similarity=0.681 Sum_probs=50.0
Q ss_pred CCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC
Q 034317 15 GEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 69 (98)
Q Consensus 15 ~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~ 69 (98)
|++++++.+||+ |||++|++++ +++++|++||+|||+||+|++|++++|++++.
T Consensus 2 p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 2 PPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp -TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred cccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 577899999999 9999999887 89999999999999999999999999998774
No 25
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.66 E-value=1.9e-17 Score=116.73 Aligned_cols=65 Identities=48% Similarity=0.770 Sum_probs=53.7
Q ss_pred CceeeeeeccCCCCC---CCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 034317 1 MGAVEGYRIAGGPLG---EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 65 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~---~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~ 65 (98)
||++|.+|....... ...+..+|||+ |||+++.+++++++++|.+||+||||||+|++|+++|+.
T Consensus 88 ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 88 IGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467787777654322 13567899999 999999988889999999999999999999999999973
No 26
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.66 E-value=2.1e-16 Score=118.01 Aligned_cols=56 Identities=34% Similarity=0.487 Sum_probs=48.5
Q ss_pred CCCCCCCCCCcC-ccCCCCCC-CHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317 15 GEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 71 (98)
Q Consensus 15 ~~~~~~~~PGd~-fDPlgl~~-~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gp 71 (98)
++.+++. .||+ |||+||++ ++++++++|++||||||+||+|++|+++|+.++.++.
T Consensus 47 ~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 47 EFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred CccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 3345666 7988 99999985 6788999999999999999999999999999887664
No 27
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.64 E-value=1.6e-16 Score=118.10 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=52.1
Q ss_pred CceeeeeeccCCCCCCCCCCCCCCcC-cc--CCCCCC-CHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317 1 MGAVEGYRIAGGPLGEVTDPLYPGGS-FD--PLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~~~~~~~~PGd~-fD--Plgl~~-~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl 72 (98)
+|++|..+++... .++++|||+ ++ ++||.. |+++++++|++|||||||||+|++|+++|+.++|..|+
T Consensus 127 ig~~E~~~~~~~~----~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~~~ 198 (202)
T PLN00120 127 IGFLELAVMKDIT----GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVELPI 198 (202)
T ss_pred HHHHHHHhhcccc----cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcC
Confidence 3566765543211 136789976 43 566664 78899999999999999999999999999999997664
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.52 E-value=4.6e-15 Score=110.28 Aligned_cols=52 Identities=42% Similarity=0.768 Sum_probs=44.8
Q ss_pred CCCCcCccCCCCCC--CHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-hcCCCch
Q 034317 21 LYPGGSFDPLGLAD--DPEAFAELKVKEIKNGRLAMFSMFGFFVQAI-VTGKGPL 72 (98)
Q Consensus 21 ~~PGd~fDPlgl~~--~~~~~~~~r~~ElknGRlAMla~~g~~~~e~-vtg~gpl 72 (98)
.-|.++|||++|++ |+++++++|++|||||||||+|++|+++|+. ++.++.+
T Consensus 41 ~~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~ 95 (202)
T PLN00120 41 QAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDI 95 (202)
T ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCcc
Confidence 45778899999973 7899999999999999999999999999997 5555544
No 29
>PHA02337 putative high light inducible protein
Probab=98.60 E-value=5e-08 Score=54.49 Aligned_cols=28 Identities=32% Similarity=0.239 Sum_probs=26.2
Q ss_pred HHHHhcchhHHHHHHHHHHHHHhcCCCc
Q 034317 44 VKEIKNGRLAMFSMFGFFVQAIVTGKGP 71 (98)
Q Consensus 44 ~~ElknGRlAMla~~g~~~~e~vtg~gp 71 (98)
.+|+.|||+||+|++..+..+.+||+++
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999874
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.17 E-value=1.6e-06 Score=64.15 Aligned_cols=40 Identities=40% Similarity=0.507 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHhc-CCCchhhhH
Q 034317 37 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVT-GKGPLENLA 76 (98)
Q Consensus 37 ~~~~~~r~~ElknGRlAMla~~g~~~~e~vt-g~gpl~~l~ 76 (98)
...+..+..|+.|||+||+||+.-++.|.+| |+|+++|+.
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~ 170 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFN 170 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhc
Confidence 3456677789999999999999999999999 999998874
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.12 E-value=2.4e-06 Score=65.24 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=33.3
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHh
Q 034317 42 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 78 (98)
Q Consensus 42 ~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~ 78 (98)
+..+|+-|||+||+||+..++.|.+||.+++.++.+.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 3569999999999999999999999999999887653
No 32
>PLN02449 ferrochelatase
Probab=70.83 E-value=3.6 Score=34.61 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhcCCCchh
Q 034317 52 LAMFSMFGFFVQAIVTGKGPLE 73 (98)
Q Consensus 52 lAMla~~g~~~~e~vtg~gpl~ 73 (98)
+||+||+.+++.|+++|.||+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999863
No 33
>PHA00003 B internal scaffolding protein
Probab=55.87 E-value=26 Score=24.28 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHH
Q 034317 17 VTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60 (98)
Q Consensus 17 ~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~ 60 (98)
..++.+|-++ +||.. .+ -+.++..-.||.|||-+..==.|+
T Consensus 39 ~~~~t~p~gLRrdpvq--~d-~EaERqkr~~iEagk~~c~RrFGg 80 (120)
T PHA00003 39 VANGTDPSGLRRDPVQ--QD-LEAERQKRADIEAGKAICARRFGG 80 (120)
T ss_pred CCCCCCccccccCccc--ch-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3567778888 88843 22 234667778999999876544443
No 34
>PHA00649 hypothetical protein
Probab=34.57 E-value=84 Score=20.24 Aligned_cols=37 Identities=27% Similarity=0.601 Sum_probs=22.4
Q ss_pred cCCCCC-CCHHHHHHHHHHHHhcch-------hHHHHHHHHHHHHH
Q 034317 28 DPLGLA-DDPEAFAELKVKEIKNGR-------LAMFSMFGFFVQAI 65 (98)
Q Consensus 28 DPlgl~-~~~~~~~~~r~~ElknGR-------lAMla~~g~~~~e~ 65 (98)
--+|.. .+|++.+.+| ..+.|+| -.|++++|+++..+
T Consensus 24 ~~LGVD~~~P~~VEEFr-~D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 24 AILGVDVDVPEQVEEFR-EDLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred HHHcCCCCCHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 345555 4677766665 3566666 34777777776543
No 35
>PF02304 Phage_B: Scaffold protein B; InterPro: IPR003513 This is a family of proteins from single-stranded DNA bacteriophages. Scaffold proteins B and D are required for procapsid formation. Sixty copies of the internal scaffold protein B are found in the procapsid.; GO: 0019069 viral capsid assembly, 0046729 viral procapsid; PDB: 1CD3_B 1AL0_B.
Probab=29.42 E-value=35 Score=23.56 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=15.1
Q ss_pred CCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHH
Q 034317 18 TDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 61 (98)
Q Consensus 18 ~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~ 61 (98)
.++..|-.+ |||..- + -+.++..-.+|.|||-+..==.|+.
T Consensus 37 ~~gt~p~~LR~~~~~~--d-~E~ERQk~~~iE~~ka~~~R~FG~A 78 (117)
T PF02304_consen 37 PSGTEPNGLRRDPVQS--D-SEAERQKRIDIEAGKAACARRFGCA 78 (117)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCccccccCcccc--h-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455677777 888431 2 2245677789999998876555543
No 36
>PHA03159 hypothetical protein; Provisional
Probab=23.74 E-value=66 Score=23.12 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=13.7
Q ss_pred ch-hHHHHHHHHHHHHH
Q 034317 50 GR-LAMFSMFGFFVQAI 65 (98)
Q Consensus 50 GR-lAMla~~g~~~~e~ 65 (98)
|| +||+++..+++|.+
T Consensus 74 GrvvAmLsFsa~vlQkI 90 (160)
T PHA03159 74 GKVVAMISFSAAALQTI 90 (160)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 44 89999999999875
No 37
>PF12055 DUF3536: Domain of unknown function (DUF3536); InterPro: IPR021923 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 274 to 285 amino acids in length. This domain is found associated with PF03065 from PFAM.
Probab=21.91 E-value=1.2e+02 Score=23.91 Aligned_cols=37 Identities=30% Similarity=0.539 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchh
Q 034317 36 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 73 (98)
Q Consensus 36 ~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~ 73 (98)
.+..+-++.-|.+.-+++|-.-||+++-++ +|..++.
T Consensus 69 ~e~~~al~LLEmQr~~l~mfTSCgWFFdei-sgiE~vq 105 (285)
T PF12055_consen 69 EERVEALKLLEMQRHALLMFTSCGWFFDEI-SGIETVQ 105 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhcc-cchhHHH
Confidence 344567899999999999999999999887 4444443
Done!