Query 034317
Match_columns 98
No_of_seqs 113 out of 1010
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 20:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 1.2E-29 4E-34 190.3 6.2 98 1-98 135-232 (232)
2 3pl9_A Chlorophyll A-B binding 99.9 1.4E-27 4.6E-32 180.3 4.5 87 1-90 155-241 (243)
3 2wsc_3 LHCA3, type II chloroph 99.9 7E-26 2.4E-30 173.6 -0.5 91 1-91 166-273 (276)
4 2wsc_1 AT3G54890, LHCA1; photo 99.9 1.5E-25 5.2E-30 168.9 -4.5 88 1-91 149-237 (241)
5 2wsc_4 Chlorophyll A-B binding 99.9 4E-25 1.4E-29 167.4 -3.6 87 1-92 149-249 (251)
6 2wsc_2 LHCA2, type II chloroph 99.9 2.3E-25 7.9E-30 170.2 -5.4 90 1-91 160-266 (269)
7 2bhw_A Chlorophyll A-B binding 99.8 6.8E-20 2.3E-24 137.3 7.1 58 13-70 31-89 (232)
8 3pl9_A Chlorophyll A-B binding 99.7 4.9E-19 1.7E-23 133.6 3.0 57 13-69 19-119 (243)
9 2wsc_2 LHCA2, type II chloroph 99.7 3.5E-19 1.2E-23 136.1 -0.5 59 14-72 73-132 (269)
10 2wsc_4 Chlorophyll A-B binding 99.7 4.9E-19 1.7E-23 134.0 -3.1 59 14-72 62-121 (251)
11 2wsc_1 AT3G54890, LHCA1; photo 99.7 4E-18 1.4E-22 128.5 -1.2 56 13-68 53-109 (241)
12 2wsc_3 LHCA3, type II chloroph 99.6 1.1E-17 3.9E-22 128.0 -5.2 58 14-72 65-129 (276)
13 4ekf_A Adenain; alpha and beta 21.9 22 0.00075 25.8 0.3 8 27-34 70-77 (204)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.96 E-value=1.2e-29 Score=190.28 Aligned_cols=98 Identities=97% Similarity=1.563 Sum_probs=91.0
Q ss_pred CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhhc
Q 034317 1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 80 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~~ 80 (98)
||++|.+|+.+.+..+..+..+|||+|||++|.+|+++++++|.+|||||||||+|++|+++|+.+||+++++++.+|++
T Consensus 135 ~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~a 214 (232)
T 2bhw_A 135 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 214 (232)
T ss_dssp HHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHH
T ss_pred HHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 58899999987554454567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCCC
Q 034317 81 DPVNNNAWAYATNFVPGK 98 (98)
Q Consensus 81 ~P~~~~~~~~~~~~~p~~ 98 (98)
||+++|.++++++++||+
T Consensus 215 dP~~~n~~~~~~~~~~~~ 232 (232)
T 2bhw_A 215 DPVNNNAWSYATNFVPGK 232 (232)
T ss_dssp CTTTSSGGGGTTTTCSCC
T ss_pred ChHHhHHHHHHHhhcCCC
Confidence 999999999999999985
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.94 E-value=1.4e-27 Score=180.32 Aligned_cols=87 Identities=51% Similarity=0.780 Sum_probs=79.5
Q ss_pred CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhhc
Q 034317 1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 80 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~~ 80 (98)
||++|.+|+++... .+..+|||+|||+||++|+++++++|.+|||||||||+|++|+++|+++||++|++|+.+|++
T Consensus 155 mG~~E~~R~~~~~~---~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hla 231 (243)
T 3pl9_A 155 IGYIEFQRNAELDT---EKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS 231 (243)
T ss_dssp HHHHHHHHHSCCCT---TTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHhhcccCC---ccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 68999999986321 234699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccc
Q 034317 81 DPVNNNAWAY 90 (98)
Q Consensus 81 ~P~~~~~~~~ 90 (98)
||+++|.+++
T Consensus 232 dP~~~ni~~~ 241 (243)
T 3pl9_A 232 DPLHTTILDR 241 (243)
T ss_dssp CSGGGSTTTT
T ss_pred Ccchhhhhhh
Confidence 9999998875
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.90 E-value=7e-26 Score=173.55 Aligned_cols=91 Identities=51% Similarity=0.921 Sum_probs=59.3
Q ss_pred CceeeeeeccCC----CC------------CCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 034317 1 MGAVEGYRIAGG----PL------------GEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 63 (98)
Q Consensus 1 ~g~~E~~r~~~~----~~------------~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~ 63 (98)
||++|.+||++. .. ....+..+|||+ |||++|++++++++++|++|||||||||+|++|+++|
T Consensus 166 iG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~ 245 (276)
T 2wsc_3 166 MGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQ 245 (276)
T ss_dssp THHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 789999998752 10 112355799998 9999999877779999999999999999999999999
Q ss_pred HHhcCCCchhhhHHhhcCCCCCCccccc
Q 034317 64 AIVTGKGPLENLADHLADPVNNNAWAYA 91 (98)
Q Consensus 64 e~vtg~gpl~~l~~~~~~P~~~~~~~~~ 91 (98)
+.+||++|++|+.+|++||+++|.+++.
T Consensus 246 ~~~tg~g~~~~l~~HladP~~~n~~~~~ 273 (276)
T 2wsc_3 246 ALVTGVGPYQNLLDHLTDPVHNNILTSL 273 (276)
T ss_dssp CCCCSSCCSCC-----------------
T ss_pred HHhcCCChHHHHHHhccCcccchhhhhc
Confidence 9999999999999999999999998864
No 4
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.88 E-value=1.5e-25 Score=168.95 Aligned_cols=88 Identities=52% Similarity=0.825 Sum_probs=72.9
Q ss_pred CceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HhcCCCchhhhHHhh
Q 034317 1 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHL 79 (98)
Q Consensus 1 ~g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e-~vtg~gpl~~l~~~~ 79 (98)
||++|.+|+.+. ...+..||||+|||+|+++|+++++++|.+|||||||||+|++|+++|+ .+||++|++++.+|+
T Consensus 149 ig~~E~~r~~~~---~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~ 225 (241)
T 2wsc_1 149 IAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225 (241)
T ss_dssp THHHHHHHTSCC---SSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSC
T ss_pred HHHHHHHHHhcc---CCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHh
Confidence 688999988643 2235679999999999998888899999999999999999999999999 589999999999999
Q ss_pred cCCCCCCccccc
Q 034317 80 ADPVNNNAWAYA 91 (98)
Q Consensus 80 ~~P~~~~~~~~~ 91 (98)
+||+++|.++..
T Consensus 226 adP~~~n~~~~~ 237 (241)
T 2wsc_1 226 ADPWHNNIGDIV 237 (241)
T ss_dssp CCSCC-------
T ss_pred cCccccceeeee
Confidence 999999998754
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.88 E-value=4e-25 Score=167.39 Aligned_cols=87 Identities=41% Similarity=0.615 Sum_probs=71.6
Q ss_pred CceeeeeeccCC----CCC----------CCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 034317 1 MGAVEGYRIAGG----PLG----------EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 66 (98)
Q Consensus 1 ~g~~E~~r~~~~----~~~----------~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~v 66 (98)
||++|.+||++. ..+ +..+..||||+|||+++.+ ++++|.+||||||| |+|++|+++|+.+
T Consensus 149 iG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~v 223 (251)
T 2wsc_4 149 SHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNV 223 (251)
T ss_dssp HHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTT
T ss_pred HHHHHHHHhhcccCCCcccccccccccccccccccCCCCccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHh
Confidence 688999998752 110 0112368999999999976 56789999999999 9999999999999
Q ss_pred cCCCchhhhHHhhcCCCCCCcccccc
Q 034317 67 TGKGPLENLADHLADPVNNNAWAYAT 92 (98)
Q Consensus 67 tg~gpl~~l~~~~~~P~~~~~~~~~~ 92 (98)
||++|++|+.+|++||+++|.+++++
T Consensus 224 TG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 224 TGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp SCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred cCccHHHHHHHHccChhhhhhhhhhc
Confidence 99999999999999999999998754
No 6
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.88 E-value=2.3e-25 Score=170.18 Aligned_cols=90 Identities=49% Similarity=0.753 Sum_probs=77.6
Q ss_pred CceeeeeeccCCCC----------C----CCCCCCCCCcC-ccCCCCCC-CHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 034317 1 MGAVEGYRIAGGPL----------G----EVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 64 (98)
Q Consensus 1 ~g~~E~~r~~~~~~----------~----~~~~~~~PGd~-fDPlgl~~-~~~~~~~~r~~ElknGRlAMla~~g~~~~e 64 (98)
||++|.+||++... . ...+..+|||+ |||+||.+ ++++++++|.+|||||||||+|++|+++|+
T Consensus 160 iG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~ 239 (269)
T 2wsc_2 160 IGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH 239 (269)
T ss_dssp HHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHH
T ss_pred HHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 68999999976311 0 12355799999 99999984 778889999999999999999999999999
Q ss_pred HhcCCCchhhhH-HhhcCCCCCCccccc
Q 034317 65 IVTGKGPLENLA-DHLADPVNNNAWAYA 91 (98)
Q Consensus 65 ~vtg~gpl~~l~-~~~~~P~~~~~~~~~ 91 (98)
.+||++|++++. +|++|| ++|.+++.
T Consensus 240 ~~tg~g~l~~l~~~HladP-~~n~~~~~ 266 (269)
T 2wsc_2 240 IYTGTGPIDNLFAAHLADP-HATIFAAF 266 (269)
T ss_dssp HHTTTCSSCCCSCCCCCCS-CCCCCSSS
T ss_pred HhcCCChHHHHHHHHhcCc-ccchhhhc
Confidence 999999999999 999999 99998754
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.80 E-value=6.8e-20 Score=137.25 Aligned_cols=58 Identities=26% Similarity=0.482 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC
Q 034317 13 PLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70 (98)
Q Consensus 13 ~~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~g 70 (98)
..++++++++|||+ |||+||++|+++++++|++||||||+||||++|++++|+++..+
T Consensus 31 ~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 31 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp SCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 45788999999999 99999999999999999999999999999999999999976533
No 8
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.74 E-value=4.9e-19 Score=133.60 Aligned_cols=57 Identities=30% Similarity=0.436 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCcC-ccCCCCCCCHHH-------------------------------------------HHHHHHHHHh
Q 034317 13 PLGEVTDPLYPGGS-FDPLGLADDPEA-------------------------------------------FAELKVKEIK 48 (98)
Q Consensus 13 ~~~~~~~~~~PGd~-fDPlgl~~~~~~-------------------------------------------~~~~r~~Elk 48 (98)
..++++||++|||| |||+||++++|. ++|+|++||+
T Consensus 19 ~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELk 98 (243)
T 3pl9_A 19 KAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELI 98 (243)
T ss_dssp ---------------------------------------------------------------------CCHHHHHHHHH
T ss_pred CCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhh
Confidence 36889999999999 999999998862 7899999999
Q ss_pred cchhHHHHHHHHHHHHHhcCC
Q 034317 49 NGRLAMFSMFGFFVQAIVTGK 69 (98)
Q Consensus 49 nGRlAMla~~g~~~~e~vtg~ 69 (98)
|||+||||++|++++|++++.
T Consensus 99 HGRwAMLAvlG~lvpE~l~g~ 119 (243)
T 3pl9_A 99 HGRWAMLATLGALTVEGLTGI 119 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred cchhHHHHHHHHHhHHhhcCc
Confidence 999999999999999998753
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.72 E-value=3.5e-19 Score=136.05 Aligned_cols=59 Identities=36% Similarity=0.513 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl 72 (98)
.++++++++|||+ |||+||++|+++++++|++|||||||||||++|++++|++++.+.+
T Consensus 73 ~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 73 PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ---------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred CcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 5778999999999 9999999999999999999999999999999999999998876544
No 10
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.69 E-value=4.9e-19 Score=134.04 Aligned_cols=59 Identities=36% Similarity=0.593 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl 72 (98)
.++++++++|||+ |||+||++|+++++++|++||+||||||+|++|++++|++++.+++
T Consensus 62 ~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 62 SPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp -------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 5778999999999 9999999999999999999999999999999999999999988765
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.66 E-value=4e-18 Score=128.45 Aligned_cols=56 Identities=32% Similarity=0.482 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC
Q 034317 13 PLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 68 (98)
Q Consensus 13 ~~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg 68 (98)
..++++++..|||+ |||+||++|+++++++|++|||||||||+|++|++++|+++.
T Consensus 53 ~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 53 PRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp --------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred CCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 35788999999999 999999999999999999999999999999999999998654
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.59 E-value=1.1e-17 Score=128.03 Aligned_cols=58 Identities=40% Similarity=0.544 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHH------HHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAF------AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 72 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~------~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl 72 (98)
.++++++++|||+ |||+|| +|++++ +++|++||+||||||+|++|++++|++++.+.+
T Consensus 65 ~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 65 SLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp ---------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred CcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 5788999999999 999999 677778 999999999999999999999999999877644
No 13
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=21.88 E-value=22 Score=25.84 Aligned_cols=8 Identities=50% Similarity=1.402 Sum_probs=7.3
Q ss_pred ccCCCCCC
Q 034317 27 FDPLGLAD 34 (98)
Q Consensus 27 fDPlgl~~ 34 (98)
|||+||++
T Consensus 70 FDPfG~sd 77 (204)
T 4ekf_A 70 FEPFGFSD 77 (204)
T ss_dssp ECTBTTCS
T ss_pred eCCCCCCH
Confidence 99999986
Done!