Query 034317
Match_columns 98
No_of_seqs 113 out of 1010
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 20:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034317.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034317hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rwta_ f.43.1.1 (A:) Chloroph 100.0 1.2E-29 8.7E-34 185.8 7.1 96 2-97 123-218 (218)
2 d1rwta_ f.43.1.1 (A:) Chloroph 99.8 3E-21 2.2E-25 140.7 7.1 57 14-70 19-76 (218)
3 d1nlna_ d.3.1.7 (A:) Human ade 18.4 15 0.0011 25.0 0.5 8 27-34 69-76 (203)
4 d2rh3a1 a.43.1.10 (A:82-202) V 11.6 1.6E+02 0.012 17.7 4.3 31 27-67 89-119 (121)
5 d1k8ua_ a.39.1.2 (A:) Calcycli 9.8 1.4E+02 0.01 16.4 3.3 17 52-68 73-89 (89)
6 d1ohua_ f.1.4.1 (A:) Apoptosis 8.2 1.4E+02 0.01 18.7 3.0 21 47-67 96-117 (172)
7 d1sgva1 b.122.1.1 (A:236-292) 6.4 77 0.0056 16.8 0.8 10 43-52 10-19 (57)
8 d2jeka1 a.255.1.1 (A:6-145) Hy 6.3 42 0.003 21.3 -0.5 24 41-65 17-40 (140)
9 d1f7ua1 a.27.1.1 (A:484-607) A 5.7 1.3E+02 0.0096 17.4 1.7 22 45-66 92-113 (124)
10 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 5.5 1.7E+02 0.012 17.9 2.2 20 48-67 83-103 (146)
No 1
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=99.96 E-value=1.2e-29 Score=185.80 Aligned_cols=96 Identities=97% Similarity=1.559 Sum_probs=85.9
Q ss_pred ceeeeeeccCCCCCCCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhHHhhcC
Q 034317 2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 81 (98)
Q Consensus 2 g~~E~~r~~~~~~~~~~~~~~PGd~fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~gpl~~l~~~~~~ 81 (98)
+.+|.+|..+.......+..+|++.|||+++.+++++++++|++|||||||||||++|+++|+++||++|++||.+|+++
T Consensus 123 ~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~ 202 (218)
T d1rwta_ 123 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 202 (218)
T ss_dssp HHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHC
T ss_pred hhhhhhcccCCCcccccCCCCCCCCccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcC
Confidence 34566666655555556677887789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCCC
Q 034317 82 PVNNNAWAYATNFVPG 97 (98)
Q Consensus 82 P~~~~~~~~~~~~~p~ 97 (98)
|+++|.++++|+++||
T Consensus 203 P~~~n~~~~~~~~~~~ 218 (218)
T d1rwta_ 203 PVNNNAWNFATNFVPG 218 (218)
T ss_dssp TTTSSGGGGTTSSCCC
T ss_pred chhhhHHHHHhccCCC
Confidence 9999999999999998
No 2
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=99.83 E-value=3e-21 Score=140.74 Aligned_cols=57 Identities=28% Similarity=0.493 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCcC-ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC
Q 034317 14 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 70 (98)
Q Consensus 14 ~~~~~~~~~PGd~-fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vtg~g 70 (98)
.++++|+++|||+ ||||||++|+++++++|++||||||+||||++|++++|+++...
T Consensus 19 ~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~ 76 (218)
T d1rwta_ 19 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 76 (218)
T ss_dssp CCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCC
Confidence 4889999999999 99999999999999999999999999999999999999976543
No 3
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=18.36 E-value=15 Score=24.99 Aligned_cols=8 Identities=50% Similarity=1.402 Sum_probs=7.1
Q ss_pred ccCCCCCC
Q 034317 27 FDPLGLAD 34 (98)
Q Consensus 27 fDPlgl~~ 34 (98)
|||+||++
T Consensus 69 FDPfGfsd 76 (203)
T d1nlna_ 69 FEPFGFSD 76 (203)
T ss_dssp ECTTCCCH
T ss_pred ECCCCCCH
Confidence 99999974
No 4
>d2rh3a1 a.43.1.10 (A:82-202) VirC2 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=11.60 E-value=1.6e+02 Score=17.70 Aligned_cols=31 Identities=42% Similarity=0.712 Sum_probs=18.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Q 034317 27 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 67 (98)
Q Consensus 27 fDPlgl~~~~~~~~~~r~~ElknGRlAMla~~g~~~~e~vt 67 (98)
|||+||... ..+.. .||-.|.+.++..|-.|
T Consensus 89 FDPlgleta-RAFG~---------KLAtaALasFFa~eK~t 119 (121)
T d2rh3a1 89 FDPLGLETA-RAFGH---------KLATAALACFFAREKAT 119 (121)
T ss_dssp HSTTSCSCH-HHHHH---------HHHHHHHHHHHHHHHHT
T ss_pred CCccchHHH-HHHHH---------HHHHHHHHHHHcccccc
Confidence 899999642 22322 25666777777766544
No 5
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=9.78 E-value=1.4e+02 Score=16.37 Aligned_cols=17 Identities=6% Similarity=0.364 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHhcC
Q 034317 52 LAMFSMFGFFVQAIVTG 68 (98)
Q Consensus 52 lAMla~~g~~~~e~vtg 68 (98)
+.|++-+...+++.+.|
T Consensus 73 ~~l~~~la~~c~~~~~~ 89 (89)
T d1k8ua_ 73 VTFLGALALIYNEALKG 89 (89)
T ss_dssp HHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 66777666666665543
No 6
>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=8.21 E-value=1.4e+02 Score=18.71 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=16.4
Q ss_pred Hhcch-hHHHHHHHHHHHHHhc
Q 034317 47 IKNGR-LAMFSMFGFFVQAIVT 67 (98)
Q Consensus 47 lknGR-lAMla~~g~~~~e~vt 67 (98)
++=|| +|+++|.|.++...+.
T Consensus 96 inWGRIVal~aF~g~la~~~~~ 117 (172)
T d1ohua_ 96 MSYGRLIGLISFGGFVAAKMME 117 (172)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 47788 6778888999888774
No 7
>d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.35 E-value=77 Score=16.79 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=7.4
Q ss_pred HHHHHhcchh
Q 034317 43 KVKEIKNGRL 52 (98)
Q Consensus 43 r~~ElknGRl 52 (98)
...||.|||+
T Consensus 10 Ea~~l~~Gr~ 19 (57)
T d1sgva1 10 EASAAANGRS 19 (57)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCc
Confidence 3568999983
No 8
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.27 E-value=42 Score=21.32 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=14.2
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHH
Q 034317 41 ELKVKEIKNGRLAMFSMFGFFVQAI 65 (98)
Q Consensus 41 ~~r~~ElknGRlAMla~~g~~~~e~ 65 (98)
..-.+||++||=. .=++++|++.+
T Consensus 17 ~~al~EL~~G~K~-SHWMWfIFPQl 40 (140)
T d2jeka1 17 RSVVEELRAGRKR-GHWMWFVFPQL 40 (140)
T ss_dssp HHHHHHHHTTCCC-SSCHHHHSCCB
T ss_pred HHHHHHHHcCCCC-CceeeehhHhh
Confidence 3456899999932 22345565544
No 9
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.74 E-value=1.3e+02 Score=17.36 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.2
Q ss_pred HHHhcchhHHHHHHHHHHHHHh
Q 034317 45 KEIKNGRLAMFSMFGFFVQAIV 66 (98)
Q Consensus 45 ~ElknGRlAMla~~g~~~~e~v 66 (98)
.|+++.||+++-.+..+....+
T Consensus 92 ~~~~~~RL~L~~~~~~vL~~gL 113 (124)
T d1f7ua1 92 EELATARLALYGAARQVLYNGM 113 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3678889999988888776654
No 10
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=5.51 E-value=1.7e+02 Score=17.94 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=14.2
Q ss_pred hcch-hHHHHHHHHHHHHHhc
Q 034317 48 KNGR-LAMFSMFGFFVQAIVT 67 (98)
Q Consensus 48 knGR-lAMla~~g~~~~e~vt 67 (98)
|=|| +|+++|.+.++.....
T Consensus 83 NWGRIVaLfaFg~~la~~~~~ 103 (146)
T d1k3ka_ 83 NWGRALAILTFGSFVAQKLSN 103 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 4467 7889998877766543
Done!