Query 034318
Match_columns 98
No_of_seqs 162 out of 845
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02386 superoxide dismutase 99.9 3.2E-25 7E-30 161.1 8.6 81 17-97 41-151 (152)
2 PLN02642 copper, zinc superoxi 99.9 5.8E-25 1.3E-29 162.3 8.3 81 17-97 47-157 (164)
3 PRK10290 superoxide dismutase; 99.9 3.3E-22 7.2E-27 148.6 7.8 79 17-95 63-173 (173)
4 PRK15388 Cu/Zn superoxide dism 99.9 6.6E-22 1.4E-26 147.7 8.0 79 17-95 65-176 (177)
5 KOG0441 Cu2+/Zn2+ superoxide d 99.9 7E-22 1.5E-26 145.3 6.4 81 17-97 43-153 (154)
6 cd00305 Cu-Zn_Superoxide_Dismu 99.8 5.8E-20 1.2E-24 131.1 8.0 79 17-96 40-143 (144)
7 COG2032 SodC Cu/Zn superoxide 99.8 5.5E-20 1.2E-24 137.9 7.6 78 18-95 69-179 (179)
8 PF00080 Sod_Cu: Copper/zinc s 99.8 1.9E-20 4.1E-25 131.5 4.6 78 16-94 39-142 (142)
9 PLN02957 copper, zinc superoxi 99.8 9.7E-19 2.1E-23 133.4 8.2 80 17-98 119-208 (238)
10 KOG4656 Copper chaperone for s 99.6 7.7E-16 1.7E-20 119.3 6.0 81 17-98 121-217 (247)
11 COG2032 SodC Cu/Zn superoxide 89.1 0.29 6.3E-06 37.2 2.1 30 11-40 70-109 (179)
12 TIGR01222 minC septum site-det 61.8 11 0.00024 28.4 3.4 31 57-92 145-175 (217)
13 PRK03511 minC septum formation 55.3 15 0.00034 28.2 3.3 30 57-91 155-184 (228)
14 PRK04804 minC septum formation 46.5 27 0.00059 26.5 3.4 30 57-91 147-176 (221)
15 PRK00339 minC septum formation 43.4 33 0.00071 26.7 3.4 31 57-92 176-206 (249)
16 PRK05177 minC septum formation 40.0 40 0.00086 26.0 3.4 31 57-92 166-196 (239)
17 PF09559 Cas6: Cas6 Crispr; I 36.7 36 0.00077 26.2 2.7 28 67-94 151-188 (195)
18 PRK04516 minC septum formation 36.1 49 0.0011 26.0 3.4 30 58-92 161-190 (235)
19 TIGR02807 cas6_var CRISPR-asso 34.8 39 0.00085 25.9 2.6 28 67-94 151-188 (190)
20 PRK00030 minC septum formation 29.9 69 0.0015 26.1 3.4 29 59-92 219-247 (292)
21 PRK01973 septum formation inhi 28.2 77 0.0017 25.4 3.4 31 57-92 195-225 (271)
22 PF13627 LPAM_2: Prokaryotic l 26.7 33 0.00072 18.1 0.7 13 29-41 12-24 (24)
23 PF06773 Bim_N: Bim protein N- 26.1 60 0.0013 19.2 1.8 20 25-44 2-22 (41)
24 PRK04596 minC septum formation 23.3 1.1E+02 0.0023 24.3 3.4 31 57-92 175-205 (248)
25 COG0850 MinC Septum formation 21.9 1.1E+02 0.0023 23.6 3.0 32 57-93 145-176 (219)
26 PRK00513 minC septum formation 21.5 72 0.0016 24.1 2.0 17 76-92 149-165 (214)
No 1
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=99.92 E-value=3.2e-25 Score=161.12 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=71.4
Q ss_pred cccccccCCCCccccccCCCCccCCCCC--------CCCCCCCCceEE---------eecCeEEeeCCCCccccEEEEec
Q 034318 17 IGEISSNKYEQYLSGTGLEIELYQPDLD--------MLHCVGIPALAS---------HEHSSVALSGPDSVIGRGLVLHS 79 (98)
Q Consensus 17 ~re~~~~~~gdfssg~~sdgg~ynP~~~--------~~H~gd~p~~~~---------~~d~~i~L~G~~siiGRalVIHa 79 (98)
.+.+|+|+++|.+.+|.++|+||||.-. ..|+|||||+.. +.+..++|.|+++|+|||||||+
T Consensus 41 ~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~GDLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa 120 (152)
T PLN02386 41 LHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHA 120 (152)
T ss_pred ceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCccccccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEc
Confidence 4789999999999999999999999731 137899999863 56777889999999999999999
Q ss_pred CCC-------------CCCCCceeEEEEeec
Q 034318 80 NPS-------------PNPGPGVAWGVIGLD 97 (98)
Q Consensus 80 ~~D-------------GnaG~RiACGvI~~~ 97 (98)
++| ||||+|||||||+++
T Consensus 121 ~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~ 151 (152)
T PLN02386 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151 (152)
T ss_pred cCCCcCCCcccccccCCCCCceEEEEEEEec
Confidence 999 899999999999985
No 2
>PLN02642 copper, zinc superoxide dismutase
Probab=99.92 E-value=5.8e-25 Score=162.33 Aligned_cols=81 Identities=23% Similarity=0.399 Sum_probs=70.9
Q ss_pred cccccccCCCCccccccCCCCccCCCCC--------CCCCCCCCceEE---------eecCeEEeeCCCCccccEEEEec
Q 034318 17 IGEISSNKYEQYLSGTGLEIELYQPDLD--------MLHCVGIPALAS---------HEHSSVALSGPDSVIGRGLVLHS 79 (98)
Q Consensus 17 ~re~~~~~~gdfssg~~sdgg~ynP~~~--------~~H~gd~p~~~~---------~~d~~i~L~G~~siiGRalVIHa 79 (98)
.+.+|+|+++|.+.+|.+.|+||||... ..|+|||||++. +.+..++|.++++|+|||||||+
T Consensus 47 ~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~~~~~~rH~GDLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa 126 (164)
T PLN02642 47 FHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAGDLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHA 126 (164)
T ss_pred ceeEEEcCCCcCCCCcccccCcccCCCCcCCCCCcCCCcccccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEec
Confidence 4789999999999999999999999732 138899999864 55667788899999999999999
Q ss_pred CCC-------------CCCCCceeEEEEeec
Q 034318 80 NPS-------------PNPGPGVAWGVIGLD 97 (98)
Q Consensus 80 ~~D-------------GnaG~RiACGvI~~~ 97 (98)
++| ||||+|||||||++.
T Consensus 127 ~~DD~~~~~~~~s~~tGnaG~RiACGVI~~~ 157 (164)
T PLN02642 127 DPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157 (164)
T ss_pred cCCccCcCcccccccCCCCCceEEEEEEEec
Confidence 999 899999999999974
No 3
>PRK10290 superoxide dismutase; Provisional
Probab=99.87 E-value=3.3e-22 Score=148.64 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=65.4
Q ss_pred cccccccCCCCcc----cc----ccCCCCccCCCCC--------CCCCCCCCceEEeecCeEEe-------eCCCCcccc
Q 034318 17 IGEISSNKYEQYL----SG----TGLEIELYQPDLD--------MLHCVGIPALASHEHSSVAL-------SGPDSVIGR 73 (98)
Q Consensus 17 ~re~~~~~~gdfs----sg----~~sdgg~ynP~~~--------~~H~gd~p~~~~~~d~~i~L-------~G~~siiGR 73 (98)
.+.+|+|+++|.+ .| |.+.|+||||+.. ..|+|||||++.-.|+.+++ .+.++|+||
T Consensus 63 ~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~~~H~GDL~ni~a~~dG~a~~~~~~~~~~~~~~i~Gr 142 (173)
T PRK10290 63 EHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGKATDPVIAPRLKSLDEVKDK 142 (173)
T ss_pred ceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCCCCCcCcccCEEECCCeeEEEEEEeCCccCccccCCc
Confidence 3789999999976 33 7789999999732 13899999998877766543 357889999
Q ss_pred EEEEecCCC---------CCCCCceeEEEEe
Q 034318 74 GLVLHSNPS---------PNPGPGVAWGVIG 95 (98)
Q Consensus 74 alVIHa~~D---------GnaG~RiACGvI~ 95 (98)
|||||+++| ||||+|||||||.
T Consensus 143 alVIH~~~DD~~~~~~~~GnaG~RiACGVI~ 173 (173)
T PRK10290 143 ALMVHVGGDNMSDQPKPLGGGGERYACGVIK 173 (173)
T ss_pred EEEEECCCCCCCCCCCcCCCCcceEEEEeEC
Confidence 999999999 9999999999994
No 4
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=99.86 E-value=6.6e-22 Score=147.71 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=64.4
Q ss_pred cccccccCCCCcc----cc----ccCCCCccCCCCC---------CCCCCCCCceEEeecCeEEe-------eCCCCccc
Q 034318 17 IGEISSNKYEQYL----SG----TGLEIELYQPDLD---------MLHCVGIPALASHEHSSVAL-------SGPDSVIG 72 (98)
Q Consensus 17 ~re~~~~~~gdfs----sg----~~sdgg~ynP~~~---------~~H~gd~p~~~~~~d~~i~L-------~G~~siiG 72 (98)
.+.+|+|+++|-+ .| |.+.|+||||+.. ..|+|||||++.-.|+..++ .+.++|+|
T Consensus 65 ~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H~GDLpNi~a~~dG~a~~~~~~~~~~~~~~i~G 144 (177)
T PRK15388 65 IHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLKSLSELKG 144 (177)
T ss_pred ceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCCcCcCcCEEECCCccEEEEEEeCCcccCcccCC
Confidence 4789999999854 34 7789999999632 13889999998877765543 24678999
Q ss_pred cEEEEecCCC---------CCCCCceeEEEEe
Q 034318 73 RGLVLHSNPS---------PNPGPGVAWGVIG 95 (98)
Q Consensus 73 RalVIHa~~D---------GnaG~RiACGvI~ 95 (98)
||||||+++| ||||+|||||||+
T Consensus 145 ralVIHa~~DD~~~~p~~~GnaG~RiACGVI~ 176 (177)
T PRK15388 145 HSLMIHKGGDNYSDKPAPLGGGGARFACGVIE 176 (177)
T ss_pred cEEEEECCCCCCCCCCCcCCCCCceEEEEeec
Confidence 9999999999 9999999999996
No 5
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=99.86 E-value=7e-22 Score=145.25 Aligned_cols=81 Identities=25% Similarity=0.435 Sum_probs=71.9
Q ss_pred cccccccCCCCccccccCCCCccCCCCCC--------CCCCCCCce---------EEeecCeEEeeCCCCccccEEEEec
Q 034318 17 IGEISSNKYEQYLSGTGLEIELYQPDLDM--------LHCVGIPAL---------ASHEHSSVALSGPDSVIGRGLVLHS 79 (98)
Q Consensus 17 ~re~~~~~~gdfssg~~sdgg~ynP~~~~--------~H~gd~p~~---------~~~~d~~i~L~G~~siiGRalVIHa 79 (98)
-|.+|+|+|||.+.||-|+|.||||.... -|++||.|+ ..+.|..++|+|+++|+||++|||+
T Consensus 43 ~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH~gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa 122 (154)
T KOG0441|consen 43 KHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRHVGDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHA 122 (154)
T ss_pred eeeEEEEeccCCCCChhcCCCCCCCcccCCCCccccccccccccccccCCCceEEEEEccceEEEeeccccceeEEEEec
Confidence 47899999999999999999999999321 168888875 4567888999999999999999999
Q ss_pred CCC-------------CCCCCceeEEEEeec
Q 034318 80 NPS-------------PNPGPGVAWGVIGLD 97 (98)
Q Consensus 80 ~~D-------------GnaG~RiACGvI~~~ 97 (98)
++| ||||+|+|||+|+++
T Consensus 123 ~~ddLg~G~~~~s~ktgnag~r~aCgvi~~~ 153 (154)
T KOG0441|consen 123 GEDDLGKGGHELSKKTGNAGARPACGVIGIA 153 (154)
T ss_pred cCccccCCchhhhhhccccCCCccceeeecc
Confidence 999 999999999999986
No 6
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=99.81 E-value=5.8e-20 Score=131.12 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=68.6
Q ss_pred cccccccCCCCccccccCCCCccCCCCCCC---------CCCCCCceEE---------eecCeEEeeCCCCccccEEEEe
Q 034318 17 IGEISSNKYEQYLSGTGLEIELYQPDLDML---------HCVGIPALAS---------HEHSSVALSGPDSVIGRGLVLH 78 (98)
Q Consensus 17 ~re~~~~~~gdfssg~~sdgg~ynP~~~~~---------H~gd~p~~~~---------~~d~~i~L~G~~siiGRalVIH 78 (98)
.+.+|+|+++|.+.+|.++|+||||. ... |+||||+++. +.+..++|++.++++|||||||
T Consensus 40 ~hg~HIHe~Gd~~~~~~saGgh~np~-~~~hg~~~~~~~h~GDLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH 118 (144)
T cd00305 40 LHGFHIHEFGDCTNGCTSAGGHFNPF-GKKHGGPNDEGRHAGDLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVH 118 (144)
T ss_pred ceeEEEEecCCCCCccccccCccCCC-CCCCCCCCCCCCCCCcCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEe
Confidence 57899999999999999999999997 332 8899999865 4456677888889999999999
Q ss_pred cCCC-------CCCCCceeEEEEee
Q 034318 79 SNPS-------PNPGPGVAWGVIGL 96 (98)
Q Consensus 79 a~~D-------GnaG~RiACGvI~~ 96 (98)
+++| |++|.|++||+|-.
T Consensus 119 ~~~Dd~~~~p~~~sg~~~~~G~~~a 143 (144)
T cd00305 119 AGQDDLGKGPDELSGGTGNAGVRVA 143 (144)
T ss_pred cCCCCCCCCCCcccccceeeEeEEe
Confidence 9999 88999999999854
No 7
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.5e-20 Score=137.94 Aligned_cols=78 Identities=24% Similarity=0.274 Sum_probs=58.2
Q ss_pred ccccccCCCCccc------cccCCCCccCCC---------CCCCCCCCCCceEEeec---------CeEEeeCCCCcccc
Q 034318 18 GEISSNKYEQYLS------GTGLEIELYQPD---------LDMLHCVGIPALASHEH---------SSVALSGPDSVIGR 73 (98)
Q Consensus 18 re~~~~~~gdfss------g~~sdgg~ynP~---------~~~~H~gd~p~~~~~~d---------~~i~L~G~~siiGR 73 (98)
+.+|+||.|+=.. .+.|.|+||||. ....|+||||+++...| ..++|.+..+++||
T Consensus 69 hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~~~~~H~GDLP~L~v~~dG~a~~~v~~~~~~l~~l~~v~G~ 148 (179)
T COG2032 69 HGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPNADGGHAGDLPNLFVNADGKATLPVLAPRLKLKGLLEVKGR 148 (179)
T ss_pred eeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCCCCCCCcCcCcceEECCCCcEEEEEecccceeccccccCCe
Confidence 4445555444433 234455677776 23469999999987555 45567788999999
Q ss_pred EEEEecCCC---------CCCCCceeEEEEe
Q 034318 74 GLVLHSNPS---------PNPGPGVAWGVIG 95 (98)
Q Consensus 74 alVIHa~~D---------GnaG~RiACGvI~ 95 (98)
|||||+++| ||+|+|+|||||+
T Consensus 149 alvIHag~Dd~~~~P~p~G~aG~R~ACGVI~ 179 (179)
T COG2032 149 ALVIHAGGDDYSTQPEPLGGAGARVACGVIK 179 (179)
T ss_pred EEEEEcCCccccCCCccCCCCccceeeeeeC
Confidence 999999999 9999999999995
No 8
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=99.81 E-value=1.9e-20 Score=131.53 Aligned_cols=78 Identities=28% Similarity=0.444 Sum_probs=67.8
Q ss_pred ccccccccCCCCc-cccccCCCCccCCCCCC---------CCCCCCCceE---------EeecCeEEeeCCCCccccEEE
Q 034318 16 EIGEISSNKYEQY-LSGTGLEIELYQPDLDM---------LHCVGIPALA---------SHEHSSVALSGPDSVIGRGLV 76 (98)
Q Consensus 16 ~~re~~~~~~gdf-ssg~~sdgg~ynP~~~~---------~H~gd~p~~~---------~~~d~~i~L~G~~siiGRalV 76 (98)
..+.+|+|++|+- +..|.+.|+||||. .. .|.|||+++. .+.|..++|+|+++|+|||||
T Consensus 39 g~~~~hIH~~g~~~~~~c~s~G~h~np~-~~~~~~~~~~~~~~GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiV 117 (142)
T PF00080_consen 39 GQHGYHIHENGDCSSNNCSSAGGHYNPT-NVPHGGPSADNCHAGDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIV 117 (142)
T ss_dssp EEEEEEEESSSTCSTTTTGGG-SBCETT-TSSSSSTTSSSSCTTEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEE
T ss_pred CCceEEEEeccccccccccccceecCcc-ccccCCccccccccccccccccccCCceEEEEEeeeEeccCCccccCCEEE
Confidence 3788999999999 88999999999999 42 3668898764 367788889999999999999
Q ss_pred EecCCC-------CCCCCceeEEEE
Q 034318 77 LHSNPS-------PNPGPGVAWGVI 94 (98)
Q Consensus 77 IHa~~D-------GnaG~RiACGvI 94 (98)
||+++| |++|+|||||+|
T Consensus 118 IH~~~~d~~~~~~g~~g~RlACg~I 142 (142)
T PF00080_consen 118 IHSGPDDFTSQPTGNAGARLACGVI 142 (142)
T ss_dssp EESSSSTTTHHHHTTTTSEEEEEEE
T ss_pred EEeCCCCcccccCCCCCCcEEEEeC
Confidence 999998 999999999998
No 9
>PLN02957 copper, zinc superoxide dismutase
Probab=99.77 E-value=9.7e-19 Score=133.42 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=66.7
Q ss_pred cccccccCCCCccccccCCCCccCCCCC---CCCCCCCCceEEeecCeEEee------CCCCccccEEEEecCCC-CCCC
Q 034318 17 IGEISSNKYEQYLSGTGLEIELYQPDLD---MLHCVGIPALASHEHSSVALS------GPDSVIGRGLVLHSNPS-PNPG 86 (98)
Q Consensus 17 ~re~~~~~~gdfssg~~sdgg~ynP~~~---~~H~gd~p~~~~~~d~~i~L~------G~~siiGRalVIHa~~D-GnaG 86 (98)
.+.+|+|++||.+.+|.++|+||||... ..|+|||||++...++.+.+. ...+|+|||||||+++| ++
T Consensus 119 ~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~~~h~GDLgni~~~~~G~a~~~~~~~~~~l~~iiGrs~vih~~~D~~~-- 196 (238)
T PLN02957 119 THGWSINEYGDLTRGAASTGKVYNPSDDDTDEEPLGDLGTLEADENGEATFSGTKEKLKVWDLIGRSLAVYATADKSG-- 196 (238)
T ss_pred cEEEEEcCCCCCCCCccccCCCCCCccCCCCCCCCCccCCEEeCCCceEEEEEECCCcCccccCCcEEEEEeCCCCCC--
Confidence 5899999999999999999999999832 248899999988777665541 34689999999999999 43
Q ss_pred CceeEEEEeecC
Q 034318 87 PGVAWGVIGLDA 98 (98)
Q Consensus 87 ~RiACGvI~~~a 98 (98)
.++|||||+.+|
T Consensus 197 ~~~~~gvi~rsa 208 (238)
T PLN02957 197 PGIAAAVIARSA 208 (238)
T ss_pred CCeEEEEEeccc
Confidence 359999999876
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.61 E-value=7.7e-16 Score=119.25 Aligned_cols=81 Identities=22% Similarity=0.305 Sum_probs=66.7
Q ss_pred cccccccCCCCccccccCCCCccCCCCCCCC----CCCCCceEEeecCeEEeeCC------CCccccEEEEecCCC----
Q 034318 17 IGEISSNKYEQYLSGTGLEIELYQPDLDMLH----CVGIPALASHEHSSVALSGP------DSVIGRGLVLHSNPS---- 82 (98)
Q Consensus 17 ~re~~~~~~gdfssg~~sdgg~ynP~~~~~H----~gd~p~~~~~~d~~i~L~G~------~siiGRalVIHa~~D---- 82 (98)
.+-.|+|+|||++.||.|+|.||||+ +.+| .+||.++....++...+.++ -.+||||+||-+..|
T Consensus 121 ~h~~~Ihe~GDlsng~~StG~~ynpf-~~p~g~~~~gDLGn~~ad~nGraf~s~~de~LkvwdlIGRsvVi~k~~ddlgg 199 (247)
T KOG4656|consen 121 LHGLHIHEYGDLSNGCESTGKHYNPF-QEPHGCPNEGDLGNNRADKNGRAFFSAPDEKLKVWDLIGRSVVISKSLDDLGG 199 (247)
T ss_pred ccceeEeeccccccchhhcccccCCC-cCCCCCCCcccccccccccCCcEEEecccccccHhhhhceeEEEeccccccCC
Confidence 45689999999999999999999999 5555 57888766655555555444 267999999999977
Q ss_pred --CCCCCceeEEEEeecC
Q 034318 83 --PNPGPGVAWGVIGLDA 98 (98)
Q Consensus 83 --GnaG~RiACGvI~~~a 98 (98)
||+|+|+|||||..+|
T Consensus 200 ~p~nsge~la~gvIARSA 217 (247)
T KOG4656|consen 200 EPGNSGERLACGVIARSA 217 (247)
T ss_pred CCCCcCcceeEEEeeecc
Confidence 8999999999999876
No 11
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=89.14 E-value=0.29 Score=37.21 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=19.4
Q ss_pred Cccccccccccc--cCCCCccccccC--------CCCccC
Q 034318 11 RSKVNEIGEISS--NKYEQYLSGTGL--------EIELYQ 40 (98)
Q Consensus 11 ~~~~~~~re~~~--~~~gdfssg~~s--------dgg~yn 40 (98)
+.|+||+..|.. -|.++|.|++++ +++.++
T Consensus 70 GfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~~ 109 (179)
T COG2032 70 GFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPNA 109 (179)
T ss_pred eEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCCC
Confidence 346676666555 122699999987 456666
No 12
>TIGR01222 minC septum site-determining protein MinC. The minC protein assists in correct placement of the septum for cell division by inhibiting septum formation at other sites. Homologs from Deinocoocus, Synechocystis PCC 6803, and Helicobacter pylori do not hit the full length of the model and score between the trusted and noise cutoffs.
Probab=61.83 E-value=11 Score=28.44 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=22.1
Q ss_pred eecCeEEeeCCCCccccEEEEecCCCCCCCCceeEE
Q 034318 57 HEHSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAWG 92 (98)
Q Consensus 57 ~~d~~i~L~G~~siiGRalVIHa~~DGnaG~RiACG 92 (98)
+.++.|.++| .+-||+ |||..||..+||.|=
T Consensus 145 iA~GnI~V~G--~LrG~a---~AG~~Gd~~A~I~a~ 175 (217)
T TIGR01222 145 LADGNIHVYG--KLRGRA---LAGANGDTSAVIFAL 175 (217)
T ss_pred EeCCCEEEEE--EeccEE---EcCCCCCCCcEEEec
Confidence 4455555554 234765 899999999999983
No 13
>PRK03511 minC septum formation inhibitor; Reviewed
Probab=55.32 E-value=15 Score=28.17 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=21.1
Q ss_pred eecCeEEeeCCCCccccEEEEecCCCCCCCCceeE
Q 034318 57 HEHSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAW 91 (98)
Q Consensus 57 ~~d~~i~L~G~~siiGRalVIHa~~DGnaG~RiAC 91 (98)
+.|+.|.++|+ +.||+ |||..||..+||.|
T Consensus 155 iA~GnI~V~G~--LrG~a---~AG~~Gd~~A~Ifa 184 (228)
T PRK03511 155 IADGNIHVYGM--MRGRA---LAGASGDRECQIFC 184 (228)
T ss_pred EeCCCEEEEEE--eccEE---EecCCCCCccEEEe
Confidence 33444444442 34776 99999999999998
No 14
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=46.50 E-value=27 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=21.2
Q ss_pred eecCeEEeeCCCCccccEEEEecCCCCCCCCceeE
Q 034318 57 HEHSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAW 91 (98)
Q Consensus 57 ~~d~~i~L~G~~siiGRalVIHa~~DGnaG~RiAC 91 (98)
+.++.|.++|+ +.|| +|||.+||..+||.|
T Consensus 147 iA~GnI~V~G~--LrG~---a~AG~~Gd~~A~I~a 176 (221)
T PRK04804 147 IADGSIHIYGT--LRGR---AIAGASGDKEAVIIC 176 (221)
T ss_pred EeCCCEEEEEE--eccE---EEecCCCCCccEEEe
Confidence 34455555542 3365 589999999999998
No 15
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=43.42 E-value=33 Score=26.73 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=22.4
Q ss_pred eecCeEEeeCCCCccccEEEEecCCCCCCCCceeEE
Q 034318 57 HEHSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAWG 92 (98)
Q Consensus 57 ~~d~~i~L~G~~siiGRalVIHa~~DGnaG~RiACG 92 (98)
+.|+.|.++|+ +.||+ |||..||..+||.|=
T Consensus 176 iAdGnIhVyG~--LRGrA---~AGa~Gd~~ArIf~~ 206 (249)
T PRK00339 176 LADGNIHVYGP--MRGRA---LAGIKGDTKARIFCQ 206 (249)
T ss_pred EeCCCEEEEEE--cccEE---EecCCCCCccEEEec
Confidence 44555556553 34775 799999999999993
No 16
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=40.00 E-value=40 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=21.6
Q ss_pred eecCeEEeeCCCCccccEEEEecCCCCCCCCceeEE
Q 034318 57 HEHSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAWG 92 (98)
Q Consensus 57 ~~d~~i~L~G~~siiGRalVIHa~~DGnaG~RiACG 92 (98)
+.|+.|.++|+ +.|| +|||..||..+||.|=
T Consensus 166 iA~GnI~VyG~--LRG~---a~AG~~Gd~~A~I~a~ 196 (239)
T PRK05177 166 VAGGSIHVYGA--LRGR---AIAGAAGNPSARIFCR 196 (239)
T ss_pred EeCCCEEEEEE--cceE---EEeCCCCCCccEEEec
Confidence 34455555542 3465 5899999999999994
No 17
>PF09559 Cas6: Cas6 Crispr; InterPro: IPR014174 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this entry resemble the Cas6 proteins described by IPR010156 from INTERPRO in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis (strain ATCC 29413/PCC 7937), Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus (strain DK 1622). Oddly, an orphan member is found in Thiobacillus denitrificans (strain ATCC 25259), whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=36.66 E-value=36 Score=26.16 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=21.3
Q ss_pred CCCccccEEEEecCCC---------CCC-CCceeEEEE
Q 034318 67 PDSVIGRGLVLHSNPS---------PNP-GPGVAWGVI 94 (98)
Q Consensus 67 ~~siiGRalVIHa~~D---------Gna-G~RiACGvI 94 (98)
...|+|||++||.-.. |=. ..++.||+.
T Consensus 151 ~~~v~g~sL~v~~L~~e~Sl~LQ~~GLG~~r~mGCGlF 188 (195)
T PF09559_consen 151 DGTVVGRSLMVAGLSPEDSLRLQEQGLGGKRHMGCGLF 188 (195)
T ss_pred CcceEEEEEEecCCChhhceeehhhccCCCcccceeEe
Confidence 4568999999998766 433 366999985
No 18
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=36.06 E-value=49 Score=26.02 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=21.0
Q ss_pred ecCeEEeeCCCCccccEEEEecCCCCCCCCceeEE
Q 034318 58 EHSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAWG 92 (98)
Q Consensus 58 ~d~~i~L~G~~siiGRalVIHa~~DGnaG~RiACG 92 (98)
.++.|.++| .+.||+ |||..||..+||.|=
T Consensus 161 A~G~i~v~G--~lrG~a---~AG~~Gd~~A~If~~ 190 (235)
T PRK04516 161 ADGNIHIYA--PMRGRA---LAGAKGDTSARIFIH 190 (235)
T ss_pred eCCCEEEEE--EccceE---EecCCCCCccEEEec
Confidence 344455554 234775 899999999999994
No 19
>TIGR02807 cas6_var CRISPR-associated protein, Cas6-related. Members of this protein family resemble the Cas6 proteins described by TIGR01877 in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis ATCC 29413, Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus DK 1622. Oddly, an orphan member is found in Thiobacillus denitrificans ATCC 25259, whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=34.82 E-value=39 Score=25.91 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCCccccEEEEecCCC---------CCCC-CceeEEEE
Q 034318 67 PDSVIGRGLVLHSNPS---------PNPG-PGVAWGVI 94 (98)
Q Consensus 67 ~~siiGRalVIHa~~D---------GnaG-~RiACGvI 94 (98)
...|+||+++||.-.+ |=.| .++.||+.
T Consensus 151 ~~~v~g~sL~v~~Ls~edSl~LQ~~GLGg~r~mGCGlF 188 (190)
T TIGR02807 151 GFTVVGFALELHGLSAEDSLRLQEQGLGGRRKMGCGLF 188 (190)
T ss_pred CceEEEEEEEEcCCChHHhHhHHHhcCCCCCceeeeec
Confidence 4678899999998766 4333 56899975
No 20
>PRK00030 minC septum formation inhibitor; Provisional
Probab=29.89 E-value=69 Score=26.08 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=20.1
Q ss_pred cCeEEeeCCCCccccEEEEecCCCCCCCCceeEE
Q 034318 59 HSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAWG 92 (98)
Q Consensus 59 d~~i~L~G~~siiGRalVIHa~~DGnaG~RiACG 92 (98)
|+.|.++| .+.||+ |||..||..+||-|=
T Consensus 219 dGnIhVyG--~LrGra---~AG~~Gd~~A~If~~ 247 (292)
T PRK00030 219 DGNVHVYG--PLRGKA---MAGARGDTSARIFTT 247 (292)
T ss_pred CCCEEEEE--EcccEE---EecCCCCCccEEEec
Confidence 34444444 234765 899999999999884
No 21
>PRK01973 septum formation inhibitor; Reviewed
Probab=28.19 E-value=77 Score=25.42 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=21.3
Q ss_pred eecCeEEeeCCCCccccEEEEecCCCCCCCCceeEE
Q 034318 57 HEHSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAWG 92 (98)
Q Consensus 57 ~~d~~i~L~G~~siiGRalVIHa~~DGnaG~RiACG 92 (98)
+.++.|.++| .+-||+ |||..||..+||.|=
T Consensus 195 iA~GnI~V~G--~lrGra---~AG~~Gd~~A~If~~ 225 (271)
T PRK01973 195 IAEGNIHIYA--PLRGRA---LAGVHGNHDARIFCT 225 (271)
T ss_pred EeCCCEEEEE--EeccEE---EecCCCCCccEEEec
Confidence 3344455554 234765 899999999999984
No 22
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=26.66 E-value=33 Score=18.09 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=11.0
Q ss_pred cccccCCCCccCC
Q 034318 29 LSGTGLEIELYQP 41 (98)
Q Consensus 29 ssg~~sdgg~ynP 41 (98)
.+|||-.|..|-|
T Consensus 12 LsgCG~KGpLylP 24 (24)
T PF13627_consen 12 LSGCGQKGPLYLP 24 (24)
T ss_pred HHhcccCCCCCCC
Confidence 4799999999876
No 23
>PF06773 Bim_N: Bim protein N-terminus; InterPro: IPR014771 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. This entry represents the N-terminal region of several mammal specific Bim proteins. The Bim protein is one of the BH3-only proteins, members of the Bcl-2 family that have only one of the Bcl-2 homology regions, BH3.
Probab=26.10 E-value=60 Score=19.23 Aligned_cols=20 Identities=20% Similarity=-0.021 Sum_probs=16.9
Q ss_pred CCCccccccC-CCCccCCCCC
Q 034318 25 YEQYLSGTGL-EIELYQPDLD 44 (98)
Q Consensus 25 ~gdfssg~~s-dgg~ynP~~~ 44 (98)
.-|+++.|++ .||..+|...
T Consensus 2 PSdls~eCd~~EGgqLqp~er 22 (41)
T PF06773_consen 2 PSDLSSECDRGEGGQLQPTER 22 (41)
T ss_pred ccccccccccccccccccccC
Confidence 4688999988 9999999954
No 24
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=23.34 E-value=1.1e+02 Score=24.32 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=21.3
Q ss_pred eecCeEEeeCCCCccccEEEEecCCCCCCCCceeEE
Q 034318 57 HEHSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAWG 92 (98)
Q Consensus 57 ~~d~~i~L~G~~siiGRalVIHa~~DGnaG~RiACG 92 (98)
+.|+.|.++| .+-||+ +||..||..+||-|=
T Consensus 175 ~A~G~i~v~g--~lrG~a---~AG~~g~~~a~I~~~ 205 (248)
T PRK04596 175 IADGSIHIYG--TLRGRA---LAGAQGNPDARIFCR 205 (248)
T ss_pred EeCCCEEEEE--EeccEE---EecCCCCCccEEEee
Confidence 3444555554 234776 788889999999984
No 25
>COG0850 MinC Septum formation inhibitor [Cell division and chromosome partitioning]
Probab=21.88 E-value=1.1e+02 Score=23.63 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=21.6
Q ss_pred eecCeEEeeCCCCccccEEEEecCCCCCCCCceeEEE
Q 034318 57 HEHSSVALSGPDSVIGRGLVLHSNPSPNPGPGVAWGV 93 (98)
Q Consensus 57 ~~d~~i~L~G~~siiGRalVIHa~~DGnaG~RiACGv 93 (98)
+.|+.|.++| .+.||| |||.-||.-+||+|=.
T Consensus 145 iA~GnI~VyG--~LRGrA---~AG~~Gn~~a~I~~~~ 176 (219)
T COG0850 145 IADGNIHVYG--KLRGRA---HAGAKGNDEARIFCLR 176 (219)
T ss_pred EeCCcEEEEE--EccceE---EeccCCCceEEEEEec
Confidence 3455555554 234765 7888899999999943
No 26
>PRK00513 minC septum formation inhibitor; Reviewed
Probab=21.47 E-value=72 Score=24.09 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.4
Q ss_pred EEecCCCCCCCCceeEE
Q 034318 76 VLHSNPSPNPGPGVAWG 92 (98)
Q Consensus 76 VIHa~~DGnaG~RiACG 92 (98)
++|||..||.-++|.|=
T Consensus 149 ~~~AG~~G~~~A~I~a~ 165 (214)
T PRK00513 149 IAHAGATGNKEAVIAAL 165 (214)
T ss_pred EEEECCCCCCceEEEEc
Confidence 36899999999999884
Done!