BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034321
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VUZ1|TPPC2_DROME Probable trafficking protein particle complex subunit 2
OS=Drosophila melanogaster GN=CG5161 PE=2 SV=2
Length = 139
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 3 TTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLK 59
+T F+IV +N+ PIYE E V +++ED L QFI HAALD+V + W T+ M LK
Sbjct: 2 STYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLK 61
Query: 60 AIDRFNDLVVSVYVTAGHI 78
+IDRFN VS ++TA I
Sbjct: 62 SIDRFNQWFVSAFITASQI 80
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis
familiaris GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio
GN=trappc2 PE=2 SV=1
Length = 140
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F++V ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVMVGHHDNPVFELEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPQGKTESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|Q54RV6|TPPC2_DICDI Trafficking protein particle complex subunit 2 OS=Dictyostelium
discoideum GN=trappc2 PE=3 SV=1
Length = 133
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAID 62
+T F+I+ +N+ P+YE E V++++ L Q+I H +LDIV++ W ++ M+LK ID
Sbjct: 2 STFTFLIIGKNDNPLYEIEFPITVQKKETYVL-QYIAHGSLDIVEEHVWKSNNMYLKIID 60
Query: 63 RFNDLVVSVYVTAGHI 78
+FN + +S +VTAGHI
Sbjct: 61 KFNKVQISSFVTAGHI 76
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus
norvegicus GN=Trappc2 PE=3 SV=1
Length = 140
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G +++ L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKTESKDEHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 4 TACFIIVSRNEIPIYEAEVGSAVKREDAA---QLHQFILHAALDIVQDLAWTTSAMFLKA 60
TA I+ + P+YE E+G ++ D + L+QFI+H++LDIV L WT++A ++K
Sbjct: 2 TAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQWTSNAFYMKT 61
Query: 61 IDRFNDLVVSVYVTAGHI 78
ID+F+++ +S YVT ++
Sbjct: 62 IDQFHEMYISAYVTPSNM 79
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
M+ + F+IV ++ P++E E G A ++D L+QFI HAALD+V + W ++ M+
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
LK +D+FN+ VS + H+
Sbjct: 61 LKTVDKFNEWFVSAFAFVLHM 81
>sp|A7RVK7|TPPC2_NEMVE Probable trafficking protein particle complex subunit 2
OS=Nematostella vectensis GN=v1g94938 PE=3 SV=1
Length = 153
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 1 MATTACFIIVSRNEIPIYEAEVGSAVKRE--DAAQLHQFILHAALDIVQDLAWTTSAMFL 58
M F IV + P+YE E +K + D L+QFI+HAALD+V + W T+ M+L
Sbjct: 1 MLGNYYFAIVGHYDNPVYEKEFNQQMKMDSNDHRHLNQFIVHAALDLVDESMWGTTGMYL 60
Query: 59 KAIDRFNDLVVSVY 72
K++D+FN+ VS +
Sbjct: 61 KSVDKFNEWFVSAF 74
>sp|O02173|TPPC2_CAEEL Probable trafficking protein particle complex subunit 2
OS=Caenorhabditis elegans GN=sedl-1 PE=1 SV=1
Length = 141
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 1 MATTA-CFIIVSRNEIPIYEAE--VGSAVKREDAAQLH--QFILHAALDIVQDLAWTTSA 55
MAT F I+ + PI+E + VG +E H +I HAALDIV + A TTS
Sbjct: 1 MATKEFYFAIIGHCDQPIFEMDFPVGEKKTKESEGTRHLNHYIGHAALDIVDEHALTTSQ 60
Query: 56 MFLKAIDRFNDLVVSVYVTAGHI----LHT 81
M+LK +D+FN+ VS +VTA I LHT
Sbjct: 61 MYLKMVDKFNEWYVSAFVTASRIRFIMLHT 90
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 7 FIIVSRNEIPIYEAEVGSAVKRE----DAAQLHQFILHAALDIVQDLAW 51
F I+ + + P+YE E +A + D +L+ FILHA+LDIV+DL W
Sbjct: 5 FAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVEDLQW 53
>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein
OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1
Length = 140
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1 MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTT----SAM 56
M C IV + P++ + S++ E+ +LH +I+H +LDI++D + S M
Sbjct: 1 MKKIVCVAIVGKGNNPLFIQDFSSSITDENKLKLH-YIVHCSLDIIEDKPGSNKKLPSDM 59
Query: 57 FLKAIDRFNDLVVSVYVTAGHI 78
+L + D V Y+T I
Sbjct: 60 YLGLLYPTEDYKVYGYLTNTKI 81
>sp|Q7V8D2|SYT_PROMM Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313)
GN=thrS PE=3 SV=1
Length = 640
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS ++ E + LH L + VQD A + T + + +F DLV
Sbjct: 346 SYRDLPIRLAEFGSCLRNEPSGSLHG--LMRVRNFVQDDAHIFCTELQVQEEVSKFIDLV 403
Query: 69 VSVYVTAG 76
VY + G
Sbjct: 404 FEVYRSFG 411
>sp|A2CAU4|SYT_PROM3 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9303)
GN=thrS PE=3 SV=1
Length = 640
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS ++ E + LH L + VQD A + T + + +F DLV
Sbjct: 346 SYRDLPIRLAEFGSCLRNEPSGSLHG--LMRVRNFVQDDAHIFCTELQVQEEVSKFIDLV 403
Query: 69 VSVYVTAG 76
+Y + G
Sbjct: 404 FEIYRSFG 411
>sp|Q7VBM8|SYT_PROMA Threonine--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=thrS PE=3 SV=1
Length = 643
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + VQD A + T A + +F DLV
Sbjct: 346 SYRDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFVQDDAHIFCTEAQIQDEVSKFIDLV 403
Query: 69 VSVYVTAG 76
VY G
Sbjct: 404 FDVYKAFG 411
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium falciparum
PE=3 SV=1
Length = 2339
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 10 VSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVV 69
+S+ E P ++ G + ++ +++ A++I + ++ S +K D FN ++
Sbjct: 1683 LSKKEKPTHQKNTGKM--KIYIEEIKKWLFIKAINIYKYFSFKKSIELIKKKDYFNYIIK 1740
Query: 70 SVYVTAGHILHTSTQINAMTFLLFIF 95
+ ++ +I+H + IN LFIF
Sbjct: 1741 NYDISHRYIIHDYSFINLKQLYLFIF 1766
>sp|A9BAX2|SYT_PROM4 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9211)
GN=thrS PE=3 SV=1
Length = 638
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + VQD A + T A + F DLV
Sbjct: 346 SYRDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFVQDDAHIFCTEAQVQSEVSNFIDLV 403
Query: 69 VSVYVTAG 76
VY + G
Sbjct: 404 FEVYKSFG 411
>sp|Q46LV3|SYT_PROMT Threonine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A)
GN=thrS PE=3 SV=1
Length = 641
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI +E GS + E + LH L + VQD A + T + + F DLV
Sbjct: 346 SYRDLPIRLSEFGSCHRNEPSGALHG--LMRVRNFVQDDAHIFCTDEQIQEEVQNFIDLV 403
Query: 69 VSVYVTAG 76
VY T G
Sbjct: 404 FEVYKTFG 411
>sp|A2BQ78|SYT_PROMS Threonine--tRNA ligase OS=Prochlorococcus marinus (strain AS9601)
GN=thrS PE=3 SV=1
Length = 638
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + QD A + T + + F DLV
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLV 403
Query: 69 VSVYVTAG 76
VY T G
Sbjct: 404 FEVYKTFG 411
>sp|A8G3W3|SYT_PROM2 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9215)
GN=thrS PE=3 SV=1
Length = 638
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + QD A + T + + F DLV
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLV 403
Query: 69 VSVYVTAG 76
VY T G
Sbjct: 404 FEVYKTFG 411
>sp|A3PBX1|SYT_PROM0 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9301)
GN=thrS PE=3 SV=1
Length = 638
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + QD A + T + + F DLV
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLV 403
Query: 69 VSVYVTAG 76
VY T G
Sbjct: 404 FEVYKTFG 411
>sp|Q13WF7|SYT_BURXL Threonine--tRNA ligase OS=Burkholderia xenovorans (strain LB400)
GN=thrS PE=3 SV=1
Length = 635
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L VQD A + T F+ FN L
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHG--LMRVRGFVQDDAHIFCTEDQFISESIAFNTLA 403
Query: 69 VSVYVTAG 76
+SVY G
Sbjct: 404 MSVYKDFG 411
>sp|B2SZG2|SYT_BURPP Threonine--tRNA ligase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=thrS PE=3 SV=1
Length = 635
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L VQD A + T F+ FN L
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHG--LMRVRGFVQDDAHIFCTEDQFISESIAFNTLA 403
Query: 69 VSVYVTAG 76
+SVY G
Sbjct: 404 MSVYKDFG 411
>sp|B2JJJ7|SYT_BURP8 Threonine--tRNA ligase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=thrS PE=3 SV=1
Length = 635
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L VQD A + T F+ FN L
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHG--LMRVRGFVQDDAHIFCTEDQFISESIAFNTLA 403
Query: 69 VSVYVTAG 76
+SVY G
Sbjct: 404 MSVYKDFG 411
>sp|Q7V287|SYT_PROMP Threonine--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=thrS PE=3 SV=1
Length = 638
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++PI AE GS + E + LH L + QD A + T + F DLV
Sbjct: 346 SYKDLPIRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQAEVSTFIDLV 403
Query: 69 VSVYVTAG 76
VY T G
Sbjct: 404 FEVYKTFG 411
>sp|Q0BG06|SYT_BURCM Threonine--tRNA ligase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=thrS PE=3 SV=1
Length = 635
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L VQD A + T F+ FN L
Sbjct: 346 SYRDLPLRYAEFGSCHRNEASGALHG--LMRVRGFVQDDAHIFCTEEQFIAESIAFNTLA 403
Query: 69 VSVYVTAG 76
+SVY G
Sbjct: 404 MSVYKDFG 411
>sp|B1YP13|SYT_BURA4 Threonine--tRNA ligase OS=Burkholderia ambifaria (strain MC40-6)
GN=thrS PE=3 SV=1
Length = 635
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L VQD A + T F+ FN L
Sbjct: 346 SYRDLPLRYAEFGSCHRNEASGALHG--LMRVRGFVQDDAHIFCTEEQFIAESIAFNTLA 403
Query: 69 VSVYVTAG 76
+SVY G
Sbjct: 404 MSVYKDFG 411
>sp|Q39H55|SYT_BURS3 Threonine--tRNA ligase OS=Burkholderia sp. (strain 383) GN=thrS
PE=3 SV=1
Length = 635
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L VQD A + T F+ FN L
Sbjct: 346 SYRDLPLRYAEFGSCHRNEASGALHG--LMRVRGFVQDDAHIFCTEDQFISESIAFNTLA 403
Query: 69 VSVYVTAG 76
+SVY G
Sbjct: 404 MSVYKDFG 411
>sp|B4E7I6|SYT_BURCJ Threonine--tRNA ligase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=thrS PE=3 SV=1
Length = 635
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L VQD A + T F+ FN L
Sbjct: 346 SYRDLPLRYAEFGSCHRNEASGALHG--LMRVRGFVQDDAHIFCTEDQFISESIAFNTLA 403
Query: 69 VSVYVTAG 76
+SVY G
Sbjct: 404 MSVYKDFG 411
>sp|B1K091|SYT_BURCC Threonine--tRNA ligase OS=Burkholderia cenocepacia (strain MC0-3)
GN=thrS PE=3 SV=1
Length = 635
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L VQD A + T F+ FN L
Sbjct: 346 SYRDLPLRYAEFGSCHRNEASGALHG--LMRVRGFVQDDAHIFCTEDQFISESIAFNTLA 403
Query: 69 VSVYVTAG 76
+SVY G
Sbjct: 404 MSVYKDFG 411
>sp|A2BVR0|SYT_PROM5 Threonine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9515)
GN=thrS PE=3 SV=1
Length = 638
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L + QD A + T + + F DLV
Sbjct: 346 SYKDLPLRLAEFGSCHRNEPSGALHG--LMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLV 403
Query: 69 VSVYVTAG 76
VY T G
Sbjct: 404 FEVYNTFG 411
>sp|A4JDU4|SYT_BURVG Threonine--tRNA ligase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=thrS PE=3 SV=1
Length = 635
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 11 SRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSAMFLKAIDRFNDLV 68
S ++P+ AE GS + E + LH L VQD A + T F+ FN L
Sbjct: 346 SYRDLPLRYAEFGSCHRNEASGALHG--LMRVRGFVQDDAHIFCTEDQFIAESIAFNTLA 403
Query: 69 VSVYVTAG 76
+SVY G
Sbjct: 404 MSVYKDFG 411
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,094,160
Number of Sequences: 539616
Number of extensions: 887466
Number of successful extensions: 3215
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3183
Number of HSP's gapped (non-prelim): 40
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)