Query 034321
Match_columns 98
No_of_seqs 106 out of 221
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 12:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3487 TRAPP 20 K subunit [In 100.0 1.3E-34 2.8E-39 207.1 7.6 84 5-88 3-90 (139)
2 PF04628 Sedlin_N: Sedlin, N-t 100.0 3.3E-28 7.2E-33 170.6 8.0 76 9-84 1-79 (132)
3 COG5603 TRS20 Subunit of TRAPP 99.9 1.4E-26 3E-31 164.6 7.5 83 4-86 2-87 (136)
4 KOG3444 Uncharacterized conser 99.9 2.2E-23 4.9E-28 146.1 8.3 77 4-84 2-85 (121)
5 PF04099 Sybindin: Sybindin-li 93.3 1.9 4.2E-05 30.5 9.8 79 5-84 2-92 (142)
6 COG5122 TRS23 Transport protei 71.0 10 0.00022 27.4 4.5 75 6-84 5-84 (134)
7 PF15205 PLAC9: Placenta-speci 68.5 4.4 9.5E-05 26.7 2.0 23 31-53 15-37 (74)
8 KOG3368 Transport protein part 68.1 45 0.00098 24.4 8.1 79 3-83 2-85 (140)
9 PF15017 AF1Q: Drug resistance 49.3 4.6 9.9E-05 27.3 -0.4 13 69-81 72-84 (87)
10 KOG4497 Uncharacterized conser 49.3 13 0.00028 31.4 2.2 50 35-84 168-219 (447)
11 PRK03673 hypothetical protein; 45.1 63 0.0014 26.8 5.5 47 3-51 333-379 (396)
12 PF02464 CinA: Competence-dama 43.4 84 0.0018 22.4 5.4 43 2-49 111-153 (154)
13 PRK13938 phosphoheptose isomer 30.3 1.7E+02 0.0038 21.7 5.4 50 3-52 140-193 (196)
14 PRK03657 hypothetical protein; 28.0 2.3E+02 0.005 20.9 5.7 43 2-49 123-165 (170)
15 PF12100 DUF3576: Domain of un 26.7 84 0.0018 21.9 2.9 35 35-76 5-40 (103)
16 TIGR00199 cinA_cterm competenc 25.1 2.4E+02 0.0052 20.1 5.2 40 3-46 106-145 (146)
17 PRK00549 competence damage-ind 22.6 2.7E+02 0.0059 23.0 5.7 43 3-50 368-411 (414)
18 TIGR00441 gmhA phosphoheptose 22.6 2.7E+02 0.0059 19.3 5.3 45 3-47 106-154 (154)
No 1
>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=207.14 Aligned_cols=84 Identities=51% Similarity=0.847 Sum_probs=78.4
Q ss_pred EEEEEEcCCCCeeEEEEccC----CCCchhHHHHHHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEEEEeCCceEE
Q 034321 5 ACFIIVSRNEIPIYEAEVGS----AVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILH 80 (98)
Q Consensus 5 ~~faIVG~~d~PLYe~~~~s----~~~~~~~~~l~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~VsayVT~t~iKF 80 (98)
.||||||++|+|+||.|++. ..++++.++++|||+|||||+|||.+|++++||||.||+||||.||||||+|||||
T Consensus 3 ~yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas~i~f 82 (139)
T KOG3487|consen 3 AYFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTASHIRF 82 (139)
T ss_pred eEEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccCcEEE
Confidence 49999999999999999993 33578899999999999999999999999999999999999999999999999999
Q ss_pred EEeehhhh
Q 034321 81 TSTQINAM 88 (98)
Q Consensus 81 i~~~~~~~ 88 (98)
+...+|-.
T Consensus 83 ~mlh~~~~ 90 (139)
T KOG3487|consen 83 IMLHINRA 90 (139)
T ss_pred EEEeeccc
Confidence 99988753
No 2
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=99.95 E-value=3.3e-28 Score=170.65 Aligned_cols=76 Identities=34% Similarity=0.555 Sum_probs=63.3
Q ss_pred EEcCCCCeeEEEEccCCCCch--hHHHHHHHHHHhhhhhhHHhhhh-cCccccccccccCCeEEEEEEeCCceEEEEee
Q 034321 9 IVSRNEIPIYEAEVGSAVKRE--DAAQLHQFILHAALDIVQDLAWT-TSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQ 84 (98)
Q Consensus 9 IVG~~d~PLYe~~~~s~~~~~--~~~~l~qfI~HaSLDvVeE~~w~-~~~mYLk~lD~f~~~~VsayVT~t~iKFi~~~ 84 (98)
|||++|+|||++++++++... +.+++.||++|+|||++||++|+ +++||||.||++++|+||||+|+|++|||...
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~ 79 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVH 79 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEE
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEE
Confidence 899999999999999866433 24677999999999999999999 99999999999999999999999999999865
No 3
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=99.93 E-value=1.4e-26 Score=164.56 Aligned_cols=83 Identities=30% Similarity=0.540 Sum_probs=76.4
Q ss_pred eEEEEEEcCCCCeeEEEEccC---CCCchhHHHHHHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEEEEeCCceEE
Q 034321 4 TACFIIVSRNEIPIYEAEVGS---AVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILH 80 (98)
Q Consensus 4 ~~~faIVG~~d~PLYe~~~~s---~~~~~~~~~l~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~VsayVT~t~iKF 80 (98)
..|+||||++|+|+||++++. ..+++..++++|||+|||||+||.++|+.|..|+|.+|.|.+..||||++|+++||
T Consensus 2 ~~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pSgmkf 81 (136)
T COG5603 2 GEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPSGMKF 81 (136)
T ss_pred CceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccCCceE
Confidence 358999999999999999994 34577889999999999999999999999999999999999999999999999999
Q ss_pred EEeehh
Q 034321 81 TSTQIN 86 (98)
Q Consensus 81 i~~~~~ 86 (98)
+...-|
T Consensus 82 ~~iH~n 87 (136)
T COG5603 82 LFIHQN 87 (136)
T ss_pred EEEecc
Confidence 987633
No 4
>KOG3444 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=2.2e-23 Score=146.12 Aligned_cols=77 Identities=16% Similarity=0.325 Sum_probs=69.2
Q ss_pred eEEEEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHhhhh-------cCccccccccccCCeEEEEEEeCC
Q 034321 4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWT-------TSAMFLKAIDRFNDLVVSVYVTAG 76 (98)
Q Consensus 4 ~~~faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~~w~-------~~~mYLk~lD~f~~~~VsayVT~t 76 (98)
.+|++++|++|+|||.+.++. .|.+...||.+|+|||+|||+... ++++|||++++.++|+||||+|||
T Consensus 2 ~v~~av~g~kn~~lyi~s~t~----~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNT 77 (121)
T KOG3444|consen 2 LVCLAVAGPKNEPLYIESITP----KEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNT 77 (121)
T ss_pred EEEEEEEcCCCCccEEEecCc----HHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEecc
Confidence 579999999999999999853 356677899999999999999853 479999999999999999999999
Q ss_pred ceEEEEee
Q 034321 77 HILHTSTQ 84 (98)
Q Consensus 77 ~iKFi~~~ 84 (98)
++|||..-
T Consensus 78 kVKFIlvv 85 (121)
T KOG3444|consen 78 KVKFILVV 85 (121)
T ss_pred EEEEEEEE
Confidence 99999864
No 5
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=93.27 E-value=1.9 Score=30.55 Aligned_cols=79 Identities=10% Similarity=-0.011 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCeeEEEEccCCC-----CchhHHHHHHHHHHhhhhhhHHhhhhc-------CccccccccccCCeEEEEE
Q 034321 5 ACFIIVSRNEIPIYEAEVGSAV-----KREDAAQLHQFILHAALDIVQDLAWTT-------SAMFLKAIDRFNDLVVSVY 72 (98)
Q Consensus 5 ~~faIVG~~d~PLYe~~~~s~~-----~~~~~~~l~qfI~HaSLDvVeE~~w~~-------~~mYLk~lD~f~~~~Vsay 72 (98)
+.|-|+++...-+|-+++.... +..+.+.+.=+=.--||-.+=.++.-. +.-.++. ...+.|++..|
T Consensus 2 yslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~-~~T~~yklh~~ 80 (142)
T PF04099_consen 2 YSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFES-FETDTYKLHCF 80 (142)
T ss_dssp EEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEE-EEESS-EEEEE
T ss_pred eEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEE-EEeCCEEEEEE
Confidence 5688999999999999998643 112222211122223444444443321 1112322 34678999999
Q ss_pred EeCCceEEEEee
Q 034321 73 VTAGHILHTSTQ 84 (98)
Q Consensus 73 VT~t~iKFi~~~ 84 (98)
-|+|++|||+.-
T Consensus 81 eT~TGlKFvl~t 92 (142)
T PF04099_consen 81 ETPTGLKFVLIT 92 (142)
T ss_dssp E-TTS-EEEEEE
T ss_pred EcCcCcEEEEEe
Confidence 999999999864
No 6
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=71.02 E-value=10 Score=27.41 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=45.4
Q ss_pred EEEEEcCCCCeeEEEEccCCCCchhHHHHHHH-HHHhhhhhhHHhhhhcCccccccccc----cCCeEEEEEEeCCceEE
Q 034321 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQF-ILHAALDIVQDLAWTTSAMFLKAIDR----FNDLVVSVYVTAGHILH 80 (98)
Q Consensus 6 ~faIVG~~d~PLYe~~~~s~~~~~~~~~l~qf-I~HaSLDvVeE~~w~~~~mYLk~lD~----f~~~~VsayVT~t~iKF 80 (98)
-|.||++...-+|-+||++.+. ....|.| |+-++|--|-.-.-+..+ |-|..-+ +......-|.|-++.||
T Consensus 5 ~~~iINksGglifqref~~~et---~lnsneyLiLastlhgV~aI~tq~~p-~~gssg~~~l~~~~f~m~I~qT~TG~kF 80 (134)
T COG5122 5 QFFIINKSGGLIFQREFGEGET---ELNSNEYLILASTLHGVSAILTQTIP-LPGSSGRLVLYFRNFVMTIFQTTTGTKF 80 (134)
T ss_pred EEEEEecCCcEEEEEeccCCcc---ccCcccEEEEeechhhhhhhhhhccc-CCCCCceEEEEeccEEEEEEEecCCcEE
Confidence 4778899999999999986432 1111222 333333333332222211 3333322 67788899999999999
Q ss_pred EEee
Q 034321 81 TSTQ 84 (98)
Q Consensus 81 i~~~ 84 (98)
|+..
T Consensus 81 V~~~ 84 (134)
T COG5122 81 VFVA 84 (134)
T ss_pred EEEe
Confidence 9865
No 7
>PF15205 PLAC9: Placenta-specific protein 9
Probab=68.53 E-value=4.4 Score=26.67 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhhhhHHhhhhc
Q 034321 31 AAQLHQFILHAALDIVQDLAWTT 53 (98)
Q Consensus 31 ~~~l~qfI~HaSLDvVeE~~w~~ 53 (98)
.....|..+|+-||+|||++-++
T Consensus 15 t~Cdrhmav~~RLdviEe~veKT 37 (74)
T PF15205_consen 15 TGCDRHMAVHSRLDVIEETVEKT 37 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999998765
No 8
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.10 E-value=45 Score=24.45 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=52.9
Q ss_pred ceEEEEEEcCCCCeeEEEEccCCCC---chhHHHHHHHHHHhhhhhhHHhhhhc--CccccccccccCCeEEEEEEeCCc
Q 034321 3 TTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTT--SAMFLKAIDRFNDLVVSVYVTAGH 77 (98)
Q Consensus 3 ~~~~faIVG~~d~PLYe~~~~s~~~---~~~~~~l~qfI~HaSLDvVeE~~w~~--~~mYLk~lD~f~~~~VsayVT~t~ 77 (98)
+.+-|-|-.++.+=||-+|-..++. .++.++..=|=.-.||.-+=.|+... ++-++ -.+.+.|+++=|-|||+
T Consensus 2 tiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~--sy~Ts~YklhfyeTptg 79 (140)
T KOG3368|consen 2 TIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFL--SYKTSKYKLHFYETPTG 79 (140)
T ss_pred eEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCee--EEeeceeEEEEEEcCCC
Confidence 3455778888888899887754331 23333334466677777777776543 22222 34678899999999999
Q ss_pred eEEEEe
Q 034321 78 ILHTST 83 (98)
Q Consensus 78 iKFi~~ 83 (98)
+|||+.
T Consensus 80 lk~vl~ 85 (140)
T KOG3368|consen 80 LKFVLN 85 (140)
T ss_pred cEEEEe
Confidence 999974
No 9
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=49.34 E-value=4.6 Score=27.32 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=10.1
Q ss_pred EEEEEeCCceEEE
Q 034321 69 VSVYVTAGHILHT 81 (98)
Q Consensus 69 VsayVT~t~iKFi 81 (98)
=-|++||+|||=|
T Consensus 72 ~gGWITPsNIkqi 84 (87)
T PF15017_consen 72 GGGWITPSNIKQI 84 (87)
T ss_pred CCccccchhhhhh
Confidence 3589999999843
No 10
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=49.33 E-value=13 Score=31.41 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHHHHhhhhhhHH--hhhhcCccccccccccCCeEEEEEEeCCceEEEEee
Q 034321 35 HQFILHAALDIVQD--LAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQ 84 (98)
Q Consensus 35 ~qfI~HaSLDvVeE--~~w~~~~mYLk~lD~f~~~~VsayVT~t~iKFi~~~ 84 (98)
.|..-|..+|-+|= .-|+.+...|-..|.--||+||||=-..++||++-.
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~ws 219 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWS 219 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEec
Confidence 45667888888884 368888999999999999999999999999999743
No 11
>PRK03673 hypothetical protein; Provisional
Probab=45.09 E-value=63 Score=26.84 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=34.5
Q ss_pred ceEEEEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHhhh
Q 034321 3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAW 51 (98)
Q Consensus 3 ~~~~faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~~w 51 (98)
|.+|+++-++++.-.....|. ++|++.+...++.+..|||.+=..+-
T Consensus 333 GtV~ial~~~~~~~~~~~~~~--g~R~~ir~~~~~aa~~AL~~lrr~L~ 379 (396)
T PRK03673 333 EHLNFALHTPDGTFAQRVRFS--ATRYSLAIRQEVCAMMALNMLRRWLN 379 (396)
T ss_pred CEEEEEEEcCCCEEEEEEEcC--CChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999887555555663 34666676679999999999865443
No 12
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []. This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.
Probab=43.40 E-value=84 Score=22.41 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=27.5
Q ss_pred CceEEEEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHh
Q 034321 2 ATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDL 49 (98)
Q Consensus 2 ~~~~~faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~ 49 (98)
.|.+|++|.+++..-.++..+.. +.....+..+..+||.+.+.
T Consensus 111 ~G~v~iai~~~~~~~~~~~~~~g-----~R~~ir~~~~~~al~~L~~~ 153 (154)
T PF02464_consen 111 VGTVYIAIAYRGGVWVREVQFPG-----DREEIRQRAVNQALDLLRRY 153 (154)
T ss_dssp TTEEEEEEEETTSEEEEEEE--S------HHHHHHHHHHHHHHHHH--
T ss_pred CceEEEEEEeCCceEEEEEECCC-----CHHHHHHHHHHHHHHHHHhh
Confidence 46889999999884444455532 34445678888999988664
No 13
>PRK13938 phosphoheptose isomerase; Provisional
Probab=30.27 E-value=1.7e+02 Score=21.67 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=32.7
Q ss_pred ceEEEEEEcCCCCeeEEE---EccCCC-CchhHHHHHHHHHHhhhhhhHHhhhh
Q 034321 3 TTACFIIVSRNEIPIYEA---EVGSAV-KREDAAQLHQFILHAALDIVQDLAWT 52 (98)
Q Consensus 3 ~~~~faIVG~~d~PLYe~---~~~s~~-~~~~~~~l~qfI~HaSLDvVeE~~w~ 52 (98)
+.-.++|.|..++||-+. .+..+. ........+.++.|+-.|+||+....
T Consensus 140 G~~vI~iT~~~~s~La~~aD~~l~v~~~e~~~v~e~h~~~~h~l~~~v~~~l~~ 193 (196)
T PRK13938 140 GVTVVAMTGESGGQLAEFADFLINVPSRDTGRIQESHIVFIHAISEHVEHALFA 193 (196)
T ss_pred CCEEEEEeCCCCChhhhhCCEEEEeCCCchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 345788899999998752 111111 12223445679999999999998754
No 14
>PRK03657 hypothetical protein; Validated
Probab=27.96 E-value=2.3e+02 Score=20.89 Aligned_cols=43 Identities=23% Similarity=0.155 Sum_probs=24.7
Q ss_pred CceEEEEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHh
Q 034321 2 ATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDL 49 (98)
Q Consensus 2 ~~~~~faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~ 49 (98)
.|.+|++|.+++. .+.....-.+.|++. .+..+..+|+.+.+.
T Consensus 123 vGtV~iai~~~~~--~~~~~~~~~g~R~~i---r~~a~~~al~~L~~~ 165 (170)
T PRK03657 123 AGTVWFAWNIKGQ--TYTARMHFAGDCETV---LAKAVRFALAQLLQL 165 (170)
T ss_pred CeEEEEEEEcCCc--EEEEEEecCCCHHHH---HHHHHHHHHHHHHHH
Confidence 3568999988754 444333222333433 446677778876554
No 15
>PF12100 DUF3576: Domain of unknown function (DUF3576); InterPro: IPR021959 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 100 amino acids in length. This domain has a single completely conserved residue G that may be functionally important.
Probab=26.69 E-value=84 Score=21.88 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=26.9
Q ss_pred HHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEE-EEeCC
Q 034321 35 HQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSV-YVTAG 76 (98)
Q Consensus 35 ~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~Vsa-yVT~t 76 (98)
|-|+=.||||.++ -|=|...|+|.+--+.+ |.+|.
T Consensus 5 N~yLWrASLdtLs-------FmPl~saD~~gGVI~TdWY~~p~ 40 (103)
T PF12100_consen 5 NAYLWRASLDTLS-------FMPLASADPFGGVIVTDWYSPPP 40 (103)
T ss_pred hHHHHHHHHHHHh-------hcchhhcCCCCCEEEeccccCCC
Confidence 5678889999998 44577888888888888 76644
No 16
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=25.09 E-value=2.4e+02 Score=20.08 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=22.5
Q ss_pred ceEEEEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhh
Q 034321 3 TTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIV 46 (98)
Q Consensus 3 ~~~~faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvV 46 (98)
|.+|++|.++++. .+.....-.+ +.....+-.+..|||.+
T Consensus 106 Gtv~ial~~~~~~-~~~~~~~~~g---~R~~ir~~~~~~Al~~L 145 (146)
T TIGR00199 106 GTVWFIWIIAKGQ-AYTAEMHFAG---DRETIRALAVRYALHQL 145 (146)
T ss_pred eEEEEEEEeCCCc-EEEEEEecCC---CHHHHHHHHHHHHHHHh
Confidence 5689999887664 3343332222 23333456677777653
No 17
>PRK00549 competence damage-inducible protein A; Provisional
Probab=22.61 E-value=2.7e+02 Score=22.99 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=27.2
Q ss_pred ceEEEEEEcCCCC-eeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHhh
Q 034321 3 TTACFIIVSRNEI-PIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA 50 (98)
Q Consensus 3 ~~~~faIVG~~d~-PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~~ 50 (98)
|.+|++|.++++. ......+. + +.....+..+..|||.+-+..
T Consensus 368 G~v~i~i~~~~~~~~~~~~~~~--g---~r~~ir~~~~~~aL~~l~~~l 411 (414)
T PRK00549 368 GTVYIGLATPGGETVVKELILG--G---SRSDIRERAVTYALDLLRRAL 411 (414)
T ss_pred eeEEEEEEeCCCcEEEEEEecC--C---CHHHHHHHHHHHHHHHHHHHH
Confidence 5789999887652 22333332 2 333446788999999887654
No 18
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.56 E-value=2.7e+02 Score=19.27 Aligned_cols=45 Identities=7% Similarity=0.137 Sum_probs=29.0
Q ss_pred ceEEEEEEcCCCCeeEEE---EccCCC-CchhHHHHHHHHHHhhhhhhH
Q 034321 3 TTACFIIVSRNEIPIYEA---EVGSAV-KREDAAQLHQFILHAALDIVQ 47 (98)
Q Consensus 3 ~~~~faIVG~~d~PLYe~---~~~s~~-~~~~~~~l~qfI~HaSLDvVe 47 (98)
+.-.++|-+..++||-.. .+..+. ..+-......++.|.-.|.||
T Consensus 106 g~~ii~iT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~~~~h~l~~~~~ 154 (154)
T TIGR00441 106 GMKTITLAGKDGGKMAGLADIELRVPHFYTPRIQEIHIKVIHILCQLIE 154 (154)
T ss_pred CCEEEEEeCCCCCchhhhCCEEEEeCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 345788889899998642 222111 223334567899999999885
Done!