Query 034321
Match_columns 98
No_of_seqs 106 out of 221
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 21:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_A Sedlin, trafficking pro 99.9 4.9E-27 1.7E-31 165.6 10.7 84 1-84 3-89 (142)
2 3pr6_A Trapp-associated protei 99.9 5.6E-25 1.9E-29 160.7 6.6 79 6-84 12-95 (162)
3 2j3t_C Trafficking protein par 99.8 5.1E-18 1.7E-22 120.2 10.3 81 3-84 2-86 (145)
4 3cue_C Transport protein parti 99.4 1.6E-13 5.4E-18 98.7 6.2 80 3-84 2-92 (159)
5 2j3t_D Trafficking protein par 99.3 1E-12 3.5E-17 99.6 6.1 75 7-84 84-159 (219)
6 3cue_A Transport protein parti 95.9 0.081 2.8E-06 39.9 9.9 22 3-24 2-23 (219)
7 2wzp_P Lactococcal phage P2 OR 49.3 0.77 2.6E-05 35.4 -3.7 19 34-52 30-48 (326)
8 2a9s_A Competence/damage-induc 19.6 2.3E+02 0.008 19.7 6.0 45 2-50 121-166 (171)
9 3gs2_A E3 ubiquitin-protein li 12.4 59 0.002 22.0 0.6 15 40-54 86-100 (111)
10 1r8u_A CBP/P300-interacting tr 11.8 46 0.0016 19.5 -0.1 23 34-60 9-31 (50)
No 1
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=99.94 E-value=4.9e-27 Score=165.65 Aligned_cols=84 Identities=39% Similarity=0.714 Sum_probs=77.4
Q ss_pred CCceEEEEEEcCCCCeeEEEEccCCCC---chhHHHHHHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEEEEeCCc
Q 034321 1 MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGH 77 (98)
Q Consensus 1 m~~~~~faIVG~~d~PLYe~~~~s~~~---~~~~~~l~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~VsayVT~t~ 77 (98)
|++++||+|||++|+|||++++++.++ +++.+++.||++|+|||++||+.|+++++|||.+|+|++|+||||+|+|+
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 778999999999999999999987543 45677888999999999999999999999999999999999999999999
Q ss_pred eEEEEee
Q 034321 78 ILHTSTQ 84 (98)
Q Consensus 78 iKFi~~~ 84 (98)
+|||...
T Consensus 83 ~Kfvl~~ 89 (142)
T 2j3w_A 83 MRFIMLH 89 (142)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 9998754
No 2
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.6e-25 Score=160.73 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=65.8
Q ss_pred EEEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHhh--hhcCc--cccccccccCCeEEEEEE-eCCceEE
Q 034321 6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSA--MFLKAIDRFNDLVVSVYV-TAGHILH 80 (98)
Q Consensus 6 ~faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~~--w~~~~--mYLk~lD~f~~~~VsayV-T~t~iKF 80 (98)
+++|||++|+|||++.+++.....+.....||++|+|||++||++ |++++ +|||+++++++++||||+ |+||+||
T Consensus 12 FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vKf 91 (162)
T 3pr6_A 12 FVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLKI 91 (162)
T ss_dssp EEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCEE
T ss_pred EEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceEE
Confidence 567999999999999997754334455678999999999999999 98865 799999999999999997 9999999
Q ss_pred EEee
Q 034321 81 TSTQ 84 (98)
Q Consensus 81 i~~~ 84 (98)
|...
T Consensus 92 Vl~~ 95 (162)
T 3pr6_A 92 VIGF 95 (162)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
No 3
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=99.76 E-value=5.1e-18 Score=120.23 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=70.4
Q ss_pred ceEEEEEEcCCCCeeEEEEccCCC---Cc-hhHHHHHHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEEEEeCCce
Q 034321 3 TTACFIIVSRNEIPIYEAEVGSAV---KR-EDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHI 78 (98)
Q Consensus 3 ~~~~faIVG~~d~PLYe~~~~s~~---~~-~~~~~l~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~VsayVT~t~i 78 (98)
+.+||+|||++|+|||++++++++ .. ++...+.++++|+..|++|+..|.++.++++.+ ++++|++++|+|+|++
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~-~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSF-QTSRYKLHYYETPTGI 80 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEE-ECSSCEEEEEECTTSC
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE-ecCCEEEEEEEcCCCC
Confidence 479999999999999999997643 12 344555699999999999999999899999988 8999999999999999
Q ss_pred EEEEee
Q 034321 79 LHTSTQ 84 (98)
Q Consensus 79 KFi~~~ 84 (98)
|||...
T Consensus 81 KFvl~t 86 (145)
T 2j3t_C 81 KVVMNT 86 (145)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998754
No 4
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.6e-13 Score=98.68 Aligned_cols=80 Identities=20% Similarity=0.144 Sum_probs=62.1
Q ss_pred ceEEEEEEcCCCCeeEEEEccCC----------CCchhHHHHHHHHHHhhhhhhHHhhhhc-CccccccccccCCeEEEE
Q 034321 3 TTACFIIVSRNEIPIYEAEVGSA----------VKREDAAQLHQFILHAALDIVQDLAWTT-SAMFLKAIDRFNDLVVSV 71 (98)
Q Consensus 3 ~~~~faIVG~~d~PLYe~~~~s~----------~~~~~~~~l~qfI~HaSLDvVeE~~w~~-~~mYLk~lD~f~~~~Vsa 71 (98)
+.+||.|+|++++|||++++... +.+++..++.+.++|+..+++++..|.+ .+-| ...+.++|++++
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f--~~~~T~~ykl~~ 79 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDI--RSISTGKYRVHT 79 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCE--EEEECSSCBEEE
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCe--EEEeeCCEEEEE
Confidence 47899999999999999999642 1235556778888888888888888875 2444 455678899999
Q ss_pred EEeCCceEEEEee
Q 034321 72 YVTAGHILHTSTQ 84 (98)
Q Consensus 72 yVT~t~iKFi~~~ 84 (98)
|.|+|++|||..-
T Consensus 80 ~eT~TgiKFvl~t 92 (159)
T 3cue_C 80 YCTASGLWFVLLS 92 (159)
T ss_dssp ECCSSCCEEEEEC
T ss_pred EEeCCCCEEEEEe
Confidence 9999999998753
No 5
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=99.35 E-value=1e-12 Score=99.57 Aligned_cols=75 Identities=8% Similarity=0.029 Sum_probs=59.4
Q ss_pred EEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHhhhhcC-ccccccccccCCeEEEEEEeCCceEEEEee
Q 034321 7 FIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTS-AMFLKAIDRFNDLVVSVYVTAGHILHTSTQ 84 (98)
Q Consensus 7 faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~~w~~~-~mYLk~lD~f~~~~VsayVT~t~iKFi~~~ 84 (98)
..|+|++|+|||++.+.+.. +++.+.+...++| |||++++++|..+ ...+..+ .+++|+++||+|+|++||+..-
T Consensus 84 ~~iigk~N~PLyir~f~~~l-~sn~~L~lag~lh-SLd~i~~klsp~~~s~g~~~~-~T~~ykl~~y~T~TgiKFVLlt 159 (219)
T 2j3t_D 84 EYLGNPANYPVSIRFGRPRL-TSNEKLMLASMFH-SLFAIGSQLSPEQGSSGIEML-ETDTFKLHCYQTLTGIKFVVLA 159 (219)
T ss_dssp HHTTCGGGCSEEEEEECCCC-CHHHHHHHHHHHH-HHHHHHHHTCSSSSCCSCSEE-EESSCEEEEEECTTSCEEEEEE
T ss_pred eeeecCCCCceEEEecCCCC-ChhHHHHHHHHHH-HHHHHHHHhCCCCCCCCeeEE-ecCceEEEEEEcCCCCEEEEEe
Confidence 45789999999999997642 2333444567999 9999999999753 4566555 6899999999999999998753
No 6
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.081 Score=39.89 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=19.4
Q ss_pred ceEEEEEEcCCCCeeEEEEccC
Q 034321 3 TTACFIIVSRNEIPIYEAEVGS 24 (98)
Q Consensus 3 ~~~~faIVG~~d~PLYe~~~~s 24 (98)
+.+.+-|+.|...-+|-+++..
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~ 23 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTN 23 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSS
T ss_pred eeEEEEEEeCCCCEEeehhhcc
Confidence 3678999999999999999974
No 7
>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_S 2x54_S 2x5a_S
Probab=49.28 E-value=0.77 Score=35.36 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhhHHhhhh
Q 034321 34 LHQFILHAALDIVQDLAWT 52 (98)
Q Consensus 34 l~qfI~HaSLDvVeE~~w~ 52 (98)
..||-+|..||=-|+++|.
T Consensus 30 vrqykihtnldgtddkvwd 48 (326)
T 2wzp_P 30 VRQYKIHTNLDGTDDKVWD 48 (326)
T ss_dssp CCEEEEESSTTSTTCCEEE
T ss_pred eeeeEEeccCCCCccceEe
Confidence 3689999999999999995
No 8
>2a9s_A Competence/damage-inducible protein CINA; APC5759, ATC1417, MCSG, protei structure initiative; 1.75A {Agrobacterium tumefaciens} SCOP: c.51.5.1
Probab=19.64 E-value=2.3e+02 Score=19.68 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred CceEEEEEEcCCCCe-eEEEEccCCCCchhHHHHHHHHHHhhhhhhHHhh
Q 034321 2 ATTACFIIVSRNEIP-IYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA 50 (98)
Q Consensus 2 ~~~~~faIVG~~d~P-LYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~~ 50 (98)
.|.+||++-+++... ..+..|+ ...|+ ...+..+..|||.+-+.+
T Consensus 121 vGtV~ia~a~~~~~~~~~~~~f~-~g~R~---~ir~~a~~~AL~~L~~~L 166 (171)
T 2a9s_A 121 VGLVHLATKARNGNVLHHEMRYG-DIGRT---EIRLATVRTALEMLIALN 166 (171)
T ss_dssp TTEEEEEEEETTSCEEEEEEECC-SCCHH---HHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCCEEEEEEECC-CCCHH---HHHHHHHHHHHHHHHHHH
Confidence 367899998876533 3445563 22233 345678899999987654
No 9
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=12.36 E-value=59 Score=21.99 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=12.8
Q ss_pred HhhhhhhHHhhhhcC
Q 034321 40 HAALDIVQDLAWTTS 54 (98)
Q Consensus 40 HaSLDvVeE~~w~~~ 54 (98)
+.+|+.|.||.|..+
T Consensus 86 s~tLe~VneKywkvn 100 (111)
T 3gs2_A 86 SFSLELVSEKYWKVN 100 (111)
T ss_dssp TSBHHHHHHHHTCSS
T ss_pred cccHHHHhhhhccCC
Confidence 568999999999875
No 10
>1r8u_A CBP/P300-interacting transactivator 2; zinc-binding motifs, protein-protein complex, TAZ zinc finger, transcription/transcription activator complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=11.80 E-value=46 Score=19.50 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=14.9
Q ss_pred HHHHHHHhhhhhhHHhhhhcCcccccc
Q 034321 34 LHQFILHAALDIVQDLAWTTSAMFLKA 60 (98)
Q Consensus 34 l~qfI~HaSLDvVeE~~w~~~~mYLk~ 60 (98)
+.-.++---||-|.|. +++|||.
T Consensus 9 LtsLv~ELgLdRv~EL----PEL~Lgq 31 (50)
T 1r8u_A 9 LMSLVIEMGLDRIKEL----PELWLGQ 31 (50)
T ss_dssp HHHHHHHHTGGGCCSC----CCCCTTS
T ss_pred HHHHHHHHhhHHHHHh----HHHHhcc
Confidence 3445666667766665 6777775
Done!