BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034324
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZB1|LOL1_ARATH Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1
Length = 154
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/84 (94%), Positives = 81/84 (96%), Gaps = 3/84 (3%)
Query: 16 TPPANGA---QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHT 72
TPPANG+ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHT
Sbjct: 22 TPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHT 81
Query: 73 LLMYIRGATSVQCSCCHTVNLALE 96
LLMYIRGATSVQCSCCHTVNLALE
Sbjct: 82 LLMYIRGATSVQCSCCHTVNLALE 105
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 28 CSGCRNLLLYPVGATSVCCAVCNAVTAV 55
C C LL+Y GA SV CAVCN VT+V
Sbjct: 114 CGNCMMLLMYQYGARSVKCAVCNFVTSV 141
>sp|Q0J7V9|LSD1_ORYSJ Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1
Length = 184
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/96 (88%), Positives = 88/96 (91%), Gaps = 1/96 (1%)
Query: 1 MPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 60
MPVPLAPYPTPP P P NGAQSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGT
Sbjct: 42 MPVPLAPYPTPPVP-FTPPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGT 100
Query: 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE 96
EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+E
Sbjct: 101 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAME 136
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 28 CSGCRNLLLYPVGATSVCCAVCNAVTAV-PPPGTE 61
C CR LL+Y GA SV CAVCN VT+V PGT+
Sbjct: 145 CGNCRMLLMYQYGARSVKCAVCNFVTSVGASPGTD 179
>sp|Q2QMB3|LOL2_ORYSJ Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1
Length = 172
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV-PPPGTEMAQLVCGGCHTLLMYIRGAT 81
QSQ+VC GCRN+LLYP GA SVCCAVC+AV++ P PG ++A L+CGGC TLLMY R AT
Sbjct: 2 QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61
Query: 82 SVQCSCCHTVNL 93
SV+CSCC TVNL
Sbjct: 62 SVRCSCCDTVNL 73
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
+ L+C GCR LL+Y ATSV C+ C+ V V P + +A L CG C T+LMY GA SV
Sbjct: 43 AHLICGGCRTLLMYTRNATSVRCSCCDTVNLVRPV-SSIAHLNCGQCQTVLMYPYGAPSV 101
Query: 84 QCSCCHTV 91
+C+ C+ +
Sbjct: 102 KCAICNFI 109
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTA--------VPPPGTE 61
+ L C C+ +L+YP GA SV CA+CN +T +PP GT
Sbjct: 81 AHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRHLPPNGTS 126
>sp|Q6ASS2|LOL3_ORYSJ Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1
Length = 186
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGA 80
QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP EMA L+CGGC TLLMY R A
Sbjct: 2 QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61
Query: 81 TSVQCSCCHTVNL 93
+V+CSCC TVNL
Sbjct: 62 DTVRCSCCSTVNL 74
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVT 53
+ + C CR L+YP GA SV CA+C+ +T
Sbjct: 82 AHVSCGQCRTTLMYPYGAPSVKCAICHYIT 111
>sp|P94077|LSD1_ARATH Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1
Length = 189
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
Q QLVC GCRNLL+YP GA++V CA+CN + VPPP +MA ++CGGC T+LMY RGA
Sbjct: 7 QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66
Query: 81 TSVQCSCCHTVNL 93
+SV+CSCC T NL
Sbjct: 67 SSVRCSCCQTTNL 79
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP--------PPGTEMAQLVCGGCHTLLM 75
+ ++C GCR +L+Y GA+SV C+ C VP P +++AQ+ CG C T LM
Sbjct: 49 AHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLM 108
Query: 76 YIRGATSVQCSCCHTV 91
Y GA+SV+C+ C V
Sbjct: 109 YPYGASSVKCAVCQFV 124
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 5 LAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV 55
L P + + P + AQ + C CR L+YP GA+SV CAVC VT V
Sbjct: 79 LVPAHSNQVAHAPSSQVAQ--INCGHCRTTLMYPYGASSVKCAVCQFVTNV 127
>sp|Q84UR0|LOL4_ORYSJ Protein LOL4 OS=Oryza sativa subsp. japonica GN=LOL4 PE=2 SV=1
Length = 147
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT-EMAQLVCGGCHTLLMYIRGAT 81
Q QL+CSGCR ++ Y G VCC CN +TAV P +M++L+C GC TLL Y RGA+
Sbjct: 2 QDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGAS 61
Query: 82 SVQCSCCHTVN 92
+++C C+ +N
Sbjct: 62 NIRCPSCNRLN 72
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 16 TPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLM 75
P A S+L+CSGC LL Y GA+++ C CN + + ++A L CG C T LM
Sbjct: 35 NPSAVADMSELICSGCPTLLFYNRGASNIRCPSCNRLNSTRS-ANQIAHLTCGQCRTTLM 93
Query: 76 YIRGATSVQCSCCHTVN 92
+ GA++VQC+ C VN
Sbjct: 94 HPPGASTVQCATCRYVN 110
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV 55
+ L C CR L++P GA++V CA C V V
Sbjct: 81 AHLTCGQCRTTLMHPPGASTVQCATCRYVNHV 112
>sp|Q69UP7|LOL1_ORYSJ Protein LOL1 OS=Oryza sativa subsp. japonica GN=LOL1 PE=2 SV=1
Length = 147
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 40/54 (74%)
Query: 5 LAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 58
+A P P + + GAQSQLVCSGCRNLL+YP GATS+CCAVC VTAVP P
Sbjct: 27 MASTPWSSMPPSSHSLGAQSQLVCSGCRNLLMYPAGATSICCAVCGTVTAVPAP 80
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 53 TAVPPPGTEM---AQLVCGGCHTLLMYIRGATSVQCSCCHTV 91
+++PP + +QLVC GC LLMY GATS+ C+ C TV
Sbjct: 33 SSMPPSSHSLGAQSQLVCSGCRNLLMYPAGATSICCAVCGTV 74
>sp|O65426|LOL2_ARATH Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=2 SV=1
Length = 155
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 22 AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81
++Q+VC CR LL Y G+ V C+ C V V ++ Q+ C C LLMY GA
Sbjct: 57 EKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLE-ANQVGQVNCNNCKLLLMYPYGAP 115
Query: 82 SVQCSCCHTV 91
+V+CS C++V
Sbjct: 116 AVRCSSCNSV 125
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEG 97
E AQ+VCG C LL Y+RG+ V+CS C TVNL LE
Sbjct: 57 EKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEA 93
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 25 QLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP-----PPGTEM 62
Q+ C+ C+ LL+YP GA +V C+ CN+VT + PP +E
Sbjct: 98 QVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPPWSEQ 140
>sp|Q704V3|LOL5_ORYSJ Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1
Length = 163
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 20 NGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 79
N Q+VC CR LL Y GA V C C + V E+ ++ CG C TLLMY G
Sbjct: 65 NKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYV-LEAHEVGKVHCGHCATLLMYPFG 123
Query: 80 ATSVQCSCC 88
A +V+CS C
Sbjct: 124 APAVKCSLC 132
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 59 GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE 96
E+ Q+VCG C LL Y RGA V C+CC T+N LE
Sbjct: 65 NKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLE 102
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 28 CSGCRNLLLYPVGATSVCCAVCNAVTAV 55
C C LL+YP GA +V C++C VT +
Sbjct: 111 CGHCATLLMYPFGAPAVKCSLCLFVTEI 138
>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1
Length = 367
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 8 YPTPPAP-YTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 60
YP PP+ Y PP + CSGCR L P GA S+ CA+C AVT + P T
Sbjct: 2 YPPPPSSIYAPPM-----LVNCSGCRTPLQLPSGARSIRCALCQAVTHIADPRT 50
>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=1 SV=1
Length = 418
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 28 CSGCRNLLLYPVGATSVCCAVCNAVTAVPP 57
CS CR L P GAT + CA+C+A T + P
Sbjct: 7 CSSCRTPLHLPPGATRIRCAICHAFTLIAP 36
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,261,959
Number of Sequences: 539616
Number of extensions: 1387949
Number of successful extensions: 9916
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 9769
Number of HSP's gapped (non-prelim): 139
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)