Query 034324
Match_columns 98
No_of_seqs 103 out of 123
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 21:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qxf_A GR2, 30S ribosomal prot 93.0 0.051 1.7E-06 35.0 2.1 38 43-82 7-44 (66)
2 3j20_W 30S ribosomal protein S 92.5 0.063 2.1E-06 34.3 2.1 38 43-82 15-52 (63)
3 2xzm_6 RPS27E; ribosome, trans 92.1 0.079 2.7E-06 35.3 2.3 39 43-83 32-70 (81)
4 3u5c_b RP61, YS20, 40S ribosom 89.4 0.089 3.1E-06 35.1 0.6 40 43-84 34-73 (82)
5 3iz6_X 40S ribosomal protein S 86.4 0.11 3.8E-06 34.9 -0.4 37 44-82 37-73 (86)
6 2xzm_6 RPS27E; ribosome, trans 79.0 3.6 0.00012 27.2 4.6 38 54-91 22-60 (81)
7 2yrc_A Protein transport prote 78.2 1.6 5.5E-05 26.7 2.6 39 20-58 4-48 (59)
8 1gh9_A 8.3 kDa protein (gene M 77.4 3 0.0001 26.5 3.8 31 63-95 3-33 (71)
9 3j20_W 30S ribosomal protein S 74.2 6.4 0.00022 24.9 4.7 38 54-91 5-43 (63)
10 1pft_A TFIIB, PFTFIIBN; N-term 71.8 3.1 0.00011 23.7 2.6 29 24-52 4-33 (50)
11 1pft_A TFIIB, PFTFIIBN; N-term 65.9 3.3 0.00011 23.6 1.9 27 65-91 6-33 (50)
12 1wii_A Hypothetical UPF0222 pr 64.8 7.2 0.00025 25.5 3.5 41 42-82 22-65 (85)
13 3u5c_b RP61, YS20, 40S ribosom 63.8 10 0.00035 25.1 4.1 36 56-91 26-62 (82)
14 2yrc_A Protein transport prote 63.0 4.4 0.00015 24.7 2.1 36 61-96 6-47 (59)
15 3eh2_A Protein transport prote 60.4 5.5 0.00019 34.4 3.0 37 22-58 91-131 (766)
16 3efo_B SEC24 related gene fami 60.4 5.4 0.00018 34.4 2.9 36 22-57 95-134 (770)
17 1pcx_A Protein transport prote 60.3 6.6 0.00022 34.0 3.4 33 25-57 112-148 (810)
18 2ppt_A Thioredoxin-2; thiredox 59.7 1.2 4.2E-05 29.6 -0.9 31 43-74 14-44 (155)
19 3na7_A HP0958; flagellar bioge 57.7 3.2 0.00011 30.7 1.0 14 65-78 223-236 (256)
20 1m2v_B SEC24, protein transpor 54.6 9.4 0.00032 33.9 3.5 33 25-57 228-264 (926)
21 1qxf_A GR2, 30S ribosomal prot 52.0 9.8 0.00033 24.2 2.4 33 25-57 7-40 (66)
22 1gh9_A 8.3 kDa protein (gene M 50.8 14 0.00049 23.3 3.0 31 23-55 2-32 (71)
23 3iz6_X 40S ribosomal protein S 50.6 13 0.00043 24.8 2.9 30 62-91 34-64 (86)
24 1vq8_Z 50S ribosomal protein L 49.9 9.2 0.00032 24.8 2.1 31 61-91 24-54 (83)
25 3p2a_A Thioredoxin 2, putative 48.9 3.6 0.00012 26.3 -0.0 31 43-74 5-35 (148)
26 1faq_A RAF-1; transferase, ser 47.9 15 0.00052 20.5 2.6 22 65-91 15-36 (52)
27 2k2d_A Ring finger and CHY zin 46.9 24 0.00084 22.4 3.8 34 60-93 33-66 (79)
28 2ct7_A Ring finger protein 31; 42.6 26 0.0009 21.8 3.4 23 28-50 28-50 (86)
29 1twf_I B12.6, DNA-directed RNA 39.9 15 0.0005 24.8 1.9 27 66-92 6-36 (122)
30 3p8b_A DNA-directed RNA polyme 36.2 16 0.00054 24.0 1.6 30 19-54 17-46 (81)
31 1rfh_A RAS association (ralgds 35.4 30 0.001 20.3 2.6 23 65-91 23-45 (59)
32 3m7n_A Putative uncharacterize 35.1 19 0.00064 25.4 2.0 28 63-92 139-166 (179)
33 2js4_A UPF0434 protein BB2007; 33.1 29 0.001 21.6 2.4 16 24-39 7-22 (70)
34 1pcx_A Protein transport prote 32.6 24 0.00082 30.6 2.5 31 65-95 113-147 (810)
35 2hf1_A Tetraacyldisaccharide-1 32.5 25 0.00085 21.8 2.0 15 25-39 8-22 (68)
36 2jr6_A UPF0434 protein NMA0874 32.2 26 0.00089 21.7 2.1 15 25-39 8-22 (68)
37 2dkt_A Ring finger and CHY zin 31.8 72 0.0024 22.6 4.5 24 22-50 55-78 (143)
38 2jne_A Hypothetical protein YF 31.5 85 0.0029 21.4 4.7 56 26-91 33-90 (101)
39 3j20_Y 30S ribosomal protein S 31.1 37 0.0013 19.8 2.5 26 66-91 21-46 (50)
40 1m2v_B SEC24, protein transpor 30.8 26 0.0009 31.1 2.5 31 65-95 229-263 (926)
41 2pk7_A Uncharacterized protein 30.8 22 0.00077 22.1 1.6 14 63-78 25-38 (69)
42 1ptq_A Protein kinase C delta 28.9 35 0.0012 18.7 2.1 25 26-51 12-36 (50)
43 3eh2_A Protein transport prote 28.5 26 0.00089 30.2 2.1 33 64-96 94-130 (766)
44 3efo_B SEC24 related gene fami 28.1 23 0.00079 30.5 1.7 33 64-96 98-134 (770)
45 3h0g_I DNA-directed RNA polyme 28.1 39 0.0013 22.3 2.5 10 82-91 26-35 (113)
46 1bor_A Transcription factor PM 27.3 25 0.00084 19.7 1.2 27 62-95 24-50 (56)
47 3eh1_A Protein transport prote 26.0 31 0.0011 29.7 2.1 32 25-57 85-120 (751)
48 3k7a_M Transcription initiatio 25.8 22 0.00074 27.3 1.0 29 44-74 22-52 (345)
49 2jrp_A Putative cytoplasmic pr 25.4 1.3E+02 0.0045 19.4 4.6 57 26-92 3-61 (81)
50 2e2z_A TIM15; protein import, 25.0 23 0.0008 24.0 0.9 36 19-54 7-49 (100)
51 2das_A Zinc finger MYM-type pr 25.0 35 0.0012 21.5 1.7 15 22-36 17-31 (62)
52 2fnf_X Putative RAS effector N 25.0 36 0.0012 20.8 1.8 23 65-91 36-58 (72)
53 1twf_L ABC10-alpha, DNA-direct 23.9 23 0.00078 22.2 0.7 9 82-90 45-53 (70)
54 1zbd_B Rabphilin-3A; G protein 23.7 18 0.00062 25.0 0.2 53 24-90 54-106 (134)
55 2nut_A Protein transport prote 23.6 76 0.0026 27.2 4.0 36 22-57 59-100 (769)
56 2jny_A Uncharacterized BCR; st 23.4 45 0.0015 20.6 2.0 14 63-78 27-40 (67)
57 4b6d_A RAC GTPase-activating p 23.4 44 0.0015 20.0 1.9 26 65-92 20-45 (61)
58 3eh1_A Protein transport prote 23.3 37 0.0013 29.2 2.0 31 65-96 86-120 (751)
59 1ryq_A DNA-directed RNA polyme 21.7 42 0.0014 21.3 1.6 25 23-53 9-33 (69)
60 1m2o_A SEC23, protein transpor 21.5 67 0.0023 27.5 3.3 35 23-57 51-91 (768)
61 2c6a_A Ubiquitin-protein ligas 21.1 21 0.00073 21.3 0.1 25 42-73 12-36 (46)
62 1kbe_A Kinase suppressor of RA 20.8 22 0.00074 20.7 0.1 22 65-91 15-36 (49)
No 1
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=92.97 E-value=0.051 Score=35.02 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=30.1
Q ss_pred eEecCCCCccccCCCCCCceeEEEeCCcCceEEeecCCCe
Q 034324 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82 (98)
Q Consensus 43 ~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL~yP~GA~s 82 (98)
.|+|+.|..++.+= ++....+.|.+|.++|..|.|-..
T Consensus 7 ~VKCp~C~niq~VF--ShA~tvV~C~~Cg~~L~~PTGGKA 44 (66)
T 1qxf_A 7 KVKCPDCEHEQVIF--DHPSTIVKCIICGRTVAEPTGGKG 44 (66)
T ss_dssp EEECTTTCCEEEEE--SSCSSCEECSSSCCEEEECCSSSC
T ss_pred EEECCCCCCceEEE--ecCceEEEcccCCCEEeecCCcce
Confidence 58999999888764 234577899999999999988654
No 2
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.50 E-value=0.063 Score=34.28 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=27.5
Q ss_pred eEecCCCCccccCCCCCCceeEEEeCCcCceEEeecCCCe
Q 034324 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82 (98)
Q Consensus 43 ~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL~yP~GA~s 82 (98)
.|+|+.|..++.+= .+....+.|.+|.++|..|.|-..
T Consensus 15 ~VkCp~C~~~q~VF--Sha~t~V~C~~Cgt~L~~PTGGKa 52 (63)
T 3j20_W 15 RVKCIDCGNEQIVF--SHPATKVRCLICGATLVEPTGGKG 52 (63)
T ss_dssp EEECSSSCCEEEEE--SSCSSCEECSSSCCEEEECCSSSC
T ss_pred EEECCCCCCeeEEE--ecCCeEEEccCcCCEEecCCCCcE
Confidence 47888888877763 344567888888888888887543
No 3
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=92.13 E-value=0.079 Score=35.30 Aligned_cols=39 Identities=21% Similarity=0.524 Sum_probs=28.0
Q ss_pred eEecCCCCccccCCCCCCceeEEEeCCcCceEEeecCCCeE
Q 034324 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83 (98)
Q Consensus 43 ~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL~yP~GA~sV 83 (98)
.|+|+.|..++.+= ++....+.|.+|.++|..|.|-..-
T Consensus 32 ~VkCp~C~n~q~VF--ShA~t~V~C~~Cg~~L~~PTGGKA~ 70 (81)
T 2xzm_6 32 DVKCAQCQNIQMIF--SNAQSTIICEKCSAILCKPTGGKVQ 70 (81)
T ss_dssp EEECSSSCCEEEEE--TTCSSCEECSSSCCEEEEECSSCEE
T ss_pred EeECCCCCCeeEEE--ecCccEEEccCCCCEEeecCCCCeE
Confidence 47888888777763 2445678888888888888876543
No 4
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=89.37 E-value=0.089 Score=35.12 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=26.8
Q ss_pred eEecCCCCccccCCCCCCceeEEEeCCcCceEEeecCCCeEE
Q 034324 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQ 84 (98)
Q Consensus 43 ~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL~yP~GA~sVr 84 (98)
.|+|+.|..++.+= .+....+.|.+|.++|..|.|-..-.
T Consensus 34 ~VkCp~C~~~q~VF--Sha~t~V~C~~Cg~~L~~PTGGKa~l 73 (82)
T 3u5c_b 34 DVKCPGCLNITTVF--SHAQTAVTCESCSTILCTPTGGKAKL 73 (82)
T ss_dssp EEECTTSCSCEEEE--SBCSSCCCCSSSCCCCEECCSSBCEE
T ss_pred EEECCCCCCeeEEE--ecCCeEEEccccCCEEeccCCCCeEe
Confidence 47777777777653 23346677888888888887765433
No 5
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=86.40 E-value=0.11 Score=34.92 Aligned_cols=37 Identities=32% Similarity=0.600 Sum_probs=22.9
Q ss_pred EecCCCCccccCCCCCCceeEEEeCCcCceEEeecCCCe
Q 034324 44 VCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82 (98)
Q Consensus 44 VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL~yP~GA~s 82 (98)
|+|..|..++.+= .+....+.|.+|.++|.-|.|-..
T Consensus 37 VkCp~C~~~~~VF--ShA~t~V~C~~CgtvL~~PTGGKa 73 (86)
T 3iz6_X 37 VKCQGCFNITTVF--SHSQTVVVCPGCQTVLCQPTGGKA 73 (86)
T ss_dssp EECTTTCCEEEEE--TTCSSCCCCSSSCCCCSCCCSSSC
T ss_pred EECCCCCCeeEEE--ecCCcEEEccCCCCEeecCCCCCE
Confidence 6677777666653 233455667777777777766543
No 6
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=78.95 E-value=3.6 Score=27.23 Aligned_cols=38 Identities=13% Similarity=0.610 Sum_probs=26.5
Q ss_pred cCCCCCCceeEEEeCCcC-ceEEeecCCCeEECCCCCcc
Q 034324 54 AVPPPGTEMAQLVCGGCH-TLLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 54 ~vp~~~~~~aql~Cg~Cr-~lL~yP~GA~sVrC~~C~~V 91 (98)
.++.+..-...+.|.+|. ...+|-+-+..|.|..|+++
T Consensus 22 Lv~~PnS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 22 LIQAPNSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp SSCCCSCCEEEEECSSSCCEEEEETTCSSCEECSSSCCE
T ss_pred eeeCCCCcEEEeECCCCCCeeEEEecCccEEEccCCCCE
Confidence 344455567777888885 45677777777888888776
No 7
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=78.19 E-value=1.6 Score=26.75 Aligned_cols=39 Identities=26% Similarity=0.572 Sum_probs=29.5
Q ss_pred CCCceeEEcCC--CCeee----eecCCCCeEecCCCCccccCCCC
Q 034324 20 NGAQSQLVCSG--CRNLL----LYPVGATSVCCAVCNAVTAVPPP 58 (98)
Q Consensus 20 ~~~~sQlvC~g--Cr~lL----~Yp~GA~~VrC~~C~tVn~vp~~ 58 (98)
+.+..-+.|.. ||..| .+-.|....+|..|...|.+|++
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~ 48 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPS 48 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSC
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHH
Confidence 45566678887 88876 45667788889999988888763
No 8
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=77.44 E-value=3 Score=26.54 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=23.3
Q ss_pred eEEEeCCcCceEEeecCCCeEECCCCCcccccc
Q 034324 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAL 95 (98)
Q Consensus 63 aql~Cg~Cr~lL~yP~GA~sVrC~~C~~Vt~v~ 95 (98)
+-+.|. |+..+..-.|+.+.+|+ |...-.+.
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 456787 88888888888888887 87766554
No 9
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.18 E-value=6.4 Score=24.86 Aligned_cols=38 Identities=24% Similarity=0.612 Sum_probs=27.8
Q ss_pred cCCCCCCceeEEEeCCcCc-eEEeecCCCeEECCCCCcc
Q 034324 54 AVPPPGTEMAQLVCGGCHT-LLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 54 ~vp~~~~~~aql~Cg~Cr~-lL~yP~GA~sVrC~~C~~V 91 (98)
+++.+..-.-.+.|.+|.. ..+|-+-...|+|..|.++
T Consensus 5 Lv~~PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 5 IIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp GCCCCSCCEEEEECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred cccCCCCcEEEEECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 3454556677888888864 5667778888888888875
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=71.76 E-value=3.1 Score=23.68 Aligned_cols=29 Identities=34% Similarity=0.744 Sum_probs=16.8
Q ss_pred eeEEcCCCCe-eeeecCCCCeEecCCCCcc
Q 034324 24 SQLVCSGCRN-LLLYPVGATSVCCAVCNAV 52 (98)
Q Consensus 24 sQlvC~gCr~-lL~Yp~GA~~VrC~~C~tV 52 (98)
..++|-.|.. -|.|-..+....|..|..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCc
Confidence 3455666655 5666655556666666554
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=65.86 E-value=3.3 Score=23.56 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=16.7
Q ss_pred EEeCCcCc-eEEeecCCCeEECCCCCcc
Q 034324 65 LVCGGCHT-LLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 65 l~Cg~Cr~-lL~yP~GA~sVrC~~C~~V 91 (98)
+.|-.|+. .|.|-..+....|..|..|
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCc
Confidence 45666665 6666666666666666654
No 12
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=64.82 E-value=7.2 Score=25.54 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=30.9
Q ss_pred CeEecCCCCccccCCC---CCCceeEEEeCCcCceEEeecCCCe
Q 034324 42 TSVCCAVCNAVTAVPP---PGTEMAQLVCGGCHTLLMYIRGATS 82 (98)
Q Consensus 42 ~~VrC~~C~tVn~vp~---~~~~~aql~Cg~Cr~lL~yP~GA~s 82 (98)
+.+.|+.|++.+++-- -....+.+.|+.|...-.+..+..+
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ 65 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLS 65 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSC
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccC
Confidence 5678999999976532 1345899999999998877766543
No 13
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=63.83 E-value=10 Score=25.09 Aligned_cols=36 Identities=25% Similarity=0.643 Sum_probs=23.0
Q ss_pred CCCCCceeEEEeCCcC-ceEEeecCCCeEECCCCCcc
Q 034324 56 PPPGTEMAQLVCGGCH-TLLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 56 p~~~~~~aql~Cg~Cr-~lL~yP~GA~sVrC~~C~~V 91 (98)
+.+..-.-.+.|.+|. +..+|-+-...|.|..|.++
T Consensus 26 ~~PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 26 QGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp CCCCCCEEEEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred cCCCCcEEEEECCCCCCeeEEEecCCeEEEccccCCE
Confidence 3334556667777775 34666666777777777765
No 14
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=62.95 E-value=4.4 Score=24.72 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=24.6
Q ss_pred ceeEEEeCC--cCceE----EeecCCCeEECCCCCccccccc
Q 034324 61 EMAQLVCGG--CHTLL----MYIRGATSVQCSCCHTVNLALE 96 (98)
Q Consensus 61 ~~aql~Cg~--Cr~lL----~yP~GA~sVrC~~C~~Vt~v~~ 96 (98)
+..=+.|.. ||..| .+-.+....+|..|...|.+.+
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCS
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCH
Confidence 344455655 66554 3456778999999999998764
No 15
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=60.41 E-value=5.5 Score=34.36 Aligned_cols=37 Identities=24% Similarity=0.726 Sum_probs=30.2
Q ss_pred CceeEEcCCCCeee----eecCCCCeEecCCCCccccCCCC
Q 034324 22 AQSQLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPPP 58 (98)
Q Consensus 22 ~~sQlvC~gCr~lL----~Yp~GA~~VrC~~C~tVn~vp~~ 58 (98)
+.+=+.|..||..| .+-.|....+|..|+..|.+|++
T Consensus 91 ~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 131 (766)
T 3eh2_A 91 ESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQ 131 (766)
T ss_dssp GGCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTT
T ss_pred CCCCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHH
Confidence 34558999999976 45668889999999999999864
No 16
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=60.37 E-value=5.4 Score=34.43 Aligned_cols=36 Identities=28% Similarity=0.746 Sum_probs=30.0
Q ss_pred CceeEEcCCCCeee----eecCCCCeEecCCCCccccCCC
Q 034324 22 AQSQLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (98)
Q Consensus 22 ~~sQlvC~gCr~lL----~Yp~GA~~VrC~~C~tVn~vp~ 57 (98)
+.+=+.|..||..| .+-.|....+|..|+..|.+|+
T Consensus 95 ~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~ 134 (770)
T 3efo_B 95 ESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPP 134 (770)
T ss_dssp TTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCG
T ss_pred CCCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCch
Confidence 34558999999976 5667889999999999999985
No 17
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=60.26 E-value=6.6 Score=34.05 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=27.4
Q ss_pred eEEcCCCCeee----eecCCCCeEecCCCCccccCCC
Q 034324 25 QLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (98)
Q Consensus 25 QlvC~gCr~lL----~Yp~GA~~VrC~~C~tVn~vp~ 57 (98)
=+.|..||..| .+-.|....+|..|++.|.+|+
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 57899999876 5667888999999999998875
No 18
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=59.67 E-value=1.2 Score=29.60 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=17.9
Q ss_pred eEecCCCCccccCCCCCCceeEEEeCCcCceE
Q 034324 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 74 (98)
Q Consensus 43 ~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL 74 (98)
++.|+.|.++|.+|. ......-.||.|+..|
T Consensus 14 ~~~c~~c~~~~~~~~-~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 14 RLTCLACGQANKVPS-DRLAAGPKCGICGAGL 44 (155)
T ss_dssp EEECTTTCCEEEEEG-GGTTSCCBCTTTCCBS
T ss_pred eEECccccccccCCc-ccccCCCCCCcCCccc
Confidence 466777777776653 2223344677776555
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=57.70 E-value=3.2 Score=30.74 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=7.8
Q ss_pred EEeCCcCceEEeec
Q 034324 65 LVCGGCHTLLMYIR 78 (98)
Q Consensus 65 l~Cg~Cr~lL~yP~ 78 (98)
+.|-+|+.+|.|..
T Consensus 223 v~Cp~CgRIL~~~~ 236 (256)
T 3na7_A 223 ITCPYCGRILYAEG 236 (256)
T ss_dssp EECTTTCCEEECSC
T ss_pred EECCCCCeeEEeCc
Confidence 55555555555543
No 20
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=54.60 E-value=9.4 Score=33.88 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=27.1
Q ss_pred eEEcCCCCeee----eecCCCCeEecCCCCccccCCC
Q 034324 25 QLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (98)
Q Consensus 25 QlvC~gCr~lL----~Yp~GA~~VrC~~C~tVn~vp~ 57 (98)
=+.|..||..| .+-.|....+|..|+..|.+|+
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCch
Confidence 57899999876 5667888999999999998864
No 21
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=51.97 E-value=9.8 Score=24.24 Aligned_cols=33 Identities=24% Similarity=0.657 Sum_probs=26.2
Q ss_pred eEEcCCCCee-eeecCCCCeEecCCCCccccCCC
Q 034324 25 QLVCSGCRNL-LLYPVGATSVCCAVCNAVTAVPP 57 (98)
Q Consensus 25 QlvC~gCr~l-L~Yp~GA~~VrC~~C~tVn~vp~ 57 (98)
.+.|.||..+ ..|..-.+-|.|..|+++=..|.
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PT 40 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPT 40 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEeecC
Confidence 4678899765 67888888999999999876553
No 22
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=50.77 E-value=14 Score=23.33 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=24.4
Q ss_pred ceeEEcCCCCeeeeecCCCCeEecCCCCccccC
Q 034324 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV 55 (98)
Q Consensus 23 ~sQlvC~gCr~lL~Yp~GA~~VrC~~C~tVn~v 55 (98)
..-+.|. |+.++.-..|+...+|. |...-.+
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeee
Confidence 4557888 99988888899999998 8876544
No 23
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.61 E-value=13 Score=24.83 Aligned_cols=30 Identities=30% Similarity=0.732 Sum_probs=16.0
Q ss_pred eeEEEeCCcCc-eEEeecCCCeEECCCCCcc
Q 034324 62 MAQLVCGGCHT-LLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 62 ~aql~Cg~Cr~-lL~yP~GA~sVrC~~C~~V 91 (98)
.-.+.|.+|.. ..+|-+-...|.|..|.++
T Consensus 34 Fm~VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 34 FMDVKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EEEEECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred EeEEECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 44456666643 3445555555566666554
No 24
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=49.88 E-value=9.2 Score=24.77 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=25.3
Q ss_pred ceeEEEeCCcCceEEeecCCCeEECCCCCcc
Q 034324 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 61 ~~aql~Cg~Cr~lL~yP~GA~sVrC~~C~~V 91 (98)
|...-.|..|...+++-.++...+|.-|..+
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 3456788889888899888888999988875
No 25
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=48.92 E-value=3.6 Score=26.29 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=19.0
Q ss_pred eEecCCCCccccCCCCCCceeEEEeCCcCceE
Q 034324 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 74 (98)
Q Consensus 43 ~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL 74 (98)
.+.|+.|.+.|.++. ........|+.|+..|
T Consensus 5 ~~~c~~c~~~n~~p~-~~~~~~~~~~~~~~~~ 35 (148)
T 3p2a_A 5 NTVCTACMATNRLPE-ERIDDGAKCGRCGHSL 35 (148)
T ss_dssp EEECTTTCCEEEEES-SCSCSCCBCTTTCCBT
T ss_pred EEECcccccccCCCC-cccccCCcchhcCCcc
Confidence 466777777777654 2333445577776654
No 26
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=47.95 E-value=15 Score=20.46 Aligned_cols=22 Identities=23% Similarity=0.724 Sum_probs=16.9
Q ss_pred EEeCCcCceEEeecCCCeEECCCCCcc
Q 034324 65 LVCGGCHTLLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 65 l~Cg~Cr~lL~yP~GA~sVrC~~C~~V 91 (98)
..|..|+.+|. ...+|..|...
T Consensus 15 t~C~~C~~~l~-----qG~~C~~C~~~ 36 (52)
T 1faq_A 15 AFCDICQKFLL-----NGFRCQTCGYK 36 (52)
T ss_dssp EECTTSSSEEC-----SEEECTTTTCC
T ss_pred cCCCCcccccc-----cCCEeCCCCCe
Confidence 57888888775 67888888754
No 27
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=46.92 E-value=24 Score=22.38 Aligned_cols=34 Identities=15% Similarity=0.406 Sum_probs=28.2
Q ss_pred CceeEEEeCCcCceEEeecCCCeEECCCCCcccc
Q 034324 60 TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL 93 (98)
Q Consensus 60 ~~~aql~Cg~Cr~lL~yP~GA~sVrC~~C~~Vt~ 93 (98)
.++..+.|..|...--.+...-..+|+.|+..|-
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 5578899999999888888777778999998875
No 28
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=42.56 E-value=26 Score=21.80 Aligned_cols=23 Identities=22% Similarity=0.667 Sum_probs=11.8
Q ss_pred cCCCCeeeeecCCCCeEecCCCC
Q 034324 28 CSGCRNLLLYPVGATSVCCAVCN 50 (98)
Q Consensus 28 C~gCr~lL~Yp~GA~~VrC~~C~ 50 (98)
|-+|..++....+...|.|+.|+
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~ 50 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCH 50 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTC
T ss_pred CcCCCchheecCCCCceEeCCCC
Confidence 55555555554444445555444
No 29
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=39.88 E-value=15 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=13.5
Q ss_pred EeCCcCceEEeec----CCCeEECCCCCccc
Q 034324 66 VCGGCHTLLMYIR----GATSVQCSCCHTVN 92 (98)
Q Consensus 66 ~Cg~Cr~lL~yP~----GA~sVrC~~C~~Vt 92 (98)
-|..|..+|.... +...+.|..|.+..
T Consensus 6 FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 6 FCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp BCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred cccccCccCcccccCcCCCCEEECCcCCCee
Confidence 3555555555442 23455565555543
No 30
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=36.18 E-value=16 Score=24.02 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=20.0
Q ss_pred CCCCceeEEcCCCCeeeeecCCCCeEecCCCCcccc
Q 034324 19 ANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA 54 (98)
Q Consensus 19 ~~~~~sQlvC~gCr~lL~Yp~GA~~VrC~~C~tVn~ 54 (98)
.+..|....|-.|+.|+.+- .|+.|..-+.
T Consensus 17 ~~~~m~~rAC~~C~~v~~~d------~CPnCgs~~~ 46 (81)
T 3p8b_A 17 RGSHMSEKACRHCHYITSED------RCPVCGSRDL 46 (81)
T ss_dssp -----CCEEETTTCBEESSS------SCTTTCCCCE
T ss_pred CCcchhHHHHhhCCCccCCC------CCCCCCCCcc
Confidence 45566778899999998664 5999987654
No 31
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=35.44 E-value=30 Score=20.26 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=16.5
Q ss_pred EEeCCcCceEEeecCCCeEECCCCCcc
Q 034324 65 LVCGGCHTLLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 65 l~Cg~Cr~lL~yP~GA~sVrC~~C~~V 91 (98)
..|..|+.+| .....+|..|.++
T Consensus 23 t~C~~C~~~i----~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 23 GWCDLCGREV----LRQALRCANCKFT 45 (59)
T ss_dssp EECTTTCSEE----CSCCEECTTTSCE
T ss_pred eEchhcchhh----hhCccEeCCCCCe
Confidence 4688887777 4666788887654
No 32
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=35.08 E-value=19 Score=25.41 Aligned_cols=28 Identities=25% Similarity=0.666 Sum_probs=21.5
Q ss_pred eEEEeCCcCceEEeecCCCeEECCCCCccc
Q 034324 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTVN 92 (98)
Q Consensus 63 aql~Cg~Cr~lL~yP~GA~sVrC~~C~~Vt 92 (98)
-.-.|..|+..| +|.+ ...+|+.|..+-
T Consensus 139 v~a~~~~~g~~m-~~~~-~~~~cp~~g~~e 166 (179)
T 3m7n_A 139 LRALCSNCKTEM-VREG-DILKCPECGRVE 166 (179)
T ss_dssp EECBCTTTCCBC-EECS-SSEECSSSCCEE
T ss_pred EEecccccCCce-EECC-CEEECCCCCCEE
Confidence 334566788765 8999 999999998764
No 33
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=33.08 E-value=29 Score=21.61 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=9.0
Q ss_pred eeEEcCCCCeeeeecC
Q 034324 24 SQLVCSGCRNLLLYPV 39 (98)
Q Consensus 24 sQlvC~gCr~lL~Yp~ 39 (98)
.-|+|--|+.-|.|-.
T Consensus 7 ~iL~CP~ck~~L~~~~ 22 (70)
T 2js4_A 7 DILVCPVCKGRLEFQR 22 (70)
T ss_dssp CCCBCTTTCCBEEEET
T ss_pred hheECCCCCCcCEEeC
Confidence 3456666666666643
No 34
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=32.58 E-value=24 Score=30.57 Aligned_cols=31 Identities=19% Similarity=0.567 Sum_probs=22.7
Q ss_pred EEeCCcCceE----EeecCCCeEECCCCCcccccc
Q 034324 65 LVCGGCHTLL----MYIRGATSVQCSCCHTVNLAL 95 (98)
Q Consensus 65 l~Cg~Cr~lL----~yP~GA~sVrC~~C~~Vt~v~ 95 (98)
+.|..||..| .+-.|....+|..|...|.+.
T Consensus 113 vRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P 147 (810)
T 1pcx_A 113 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVP 147 (810)
T ss_dssp CBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECC
T ss_pred CccCCccCEecCceEEeCCCCEEEccCCCCcCCCc
Confidence 4566666544 345678899999999999864
No 35
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=32.53 E-value=25 Score=21.85 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=7.7
Q ss_pred eEEcCCCCeeeeecC
Q 034324 25 QLVCSGCRNLLLYPV 39 (98)
Q Consensus 25 QlvC~gCr~lL~Yp~ 39 (98)
-|+|--|+.-|.|-.
T Consensus 8 iL~CP~ck~~L~~~~ 22 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDK 22 (68)
T ss_dssp ECBCTTTCCBCEEET
T ss_pred heECCCCCCcCeEeC
Confidence 345555555555543
No 36
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.22 E-value=26 Score=21.74 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=8.2
Q ss_pred eEEcCCCCeeeeecC
Q 034324 25 QLVCSGCRNLLLYPV 39 (98)
Q Consensus 25 QlvC~gCr~lL~Yp~ 39 (98)
-|+|--|+.-|.|-.
T Consensus 8 iL~CP~ck~~L~~~~ 22 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQ 22 (68)
T ss_dssp CCBCSSSCCBCEEET
T ss_pred heECCCCCCcCeEeC
Confidence 355555555555544
No 37
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=31.75 E-value=72 Score=22.63 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=17.2
Q ss_pred CceeEEcCCCCeeeeecCCCCeEecCCCC
Q 034324 22 AQSQLVCSGCRNLLLYPVGATSVCCAVCN 50 (98)
Q Consensus 22 ~~sQlvC~gCr~lL~Yp~GA~~VrC~~C~ 50 (98)
+...++|+-|++.+.+.. .|+.|.
T Consensus 55 ~~~~vlCg~C~~~q~~~~-----~C~~Cg 78 (143)
T 2dkt_A 55 KVKEVQCINCEKLQHAQQ-----TCEDCS 78 (143)
T ss_dssp SCCCEEESSSCCEECSCS-----BCSSSC
T ss_pred ccceeeecccCccccccC-----cCCCCC
Confidence 455889999999887632 677664
No 38
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.48 E-value=85 Score=21.38 Aligned_cols=56 Identities=27% Similarity=0.571 Sum_probs=44.0
Q ss_pred EEcCCCCeeeeecCCCCeEecCCCCccccCCCCCCceeEEEeCCcCceEEee--cCCCeEECCCCCcc
Q 034324 26 LVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYI--RGATSVQCSCCHTV 91 (98)
Q Consensus 26 lvC~gCr~lL~Yp~GA~~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL~yP--~GA~sVrC~~C~~V 91 (98)
+.|-.|+..|...-| ...|..|+.- -..+..|-.|...|-.= =||...-|..|+..
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~--------f~~~a~CPdC~q~LevLkACGAvdYFC~~chgL 90 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEF--------IEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL 90 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCE--------EEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred ccCccCCCcceecCC--EEECccccch--------hhccccCcchhhHHHHHHHhcCcchhhccCCce
Confidence 999999999996544 6679999873 23677899999988654 48888888888754
No 39
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.09 E-value=37 Score=19.78 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=14.9
Q ss_pred EeCCcCceEEeecCCCeEECCCCCcc
Q 034324 66 VCGGCHTLLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 66 ~Cg~Cr~lL~yP~GA~sVrC~~C~~V 91 (98)
.|-.|+..++.-......+|..|+++
T Consensus 21 ~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 21 FCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp ECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred cCCCCCCceEEecCCCeEECCCCCCE
Confidence 46666653333334466777777654
No 40
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=30.80 E-value=26 Score=31.08 Aligned_cols=31 Identities=19% Similarity=0.567 Sum_probs=23.3
Q ss_pred EEeCCcCceE----EeecCCCeEECCCCCcccccc
Q 034324 65 LVCGGCHTLL----MYIRGATSVQCSCCHTVNLAL 95 (98)
Q Consensus 65 l~Cg~Cr~lL----~yP~GA~sVrC~~C~~Vt~v~ 95 (98)
++|..||..| .+-.|....+|..|...|.+.
T Consensus 229 vRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P 263 (926)
T 1m2v_B 229 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVP 263 (926)
T ss_dssp CBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECC
T ss_pred CccCCccCEecCceEEeCCCCEEEccCCCCCCCCc
Confidence 5666666654 355688899999999999874
No 41
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.76 E-value=22 Score=22.10 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=8.6
Q ss_pred eEEEeCCcCceEEeec
Q 034324 63 AQLVCGGCHTLLMYIR 78 (98)
Q Consensus 63 aql~Cg~Cr~lL~yP~ 78 (98)
+.++|..|+ +.||.
T Consensus 25 ~~LiC~~cg--~~YPI 38 (69)
T 2pk7_A 25 TELISKGAG--LAYPI 38 (69)
T ss_dssp SEEEETTTT--EEEEE
T ss_pred CEEEcCCCC--cEecC
Confidence 566777765 55554
No 42
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=28.93 E-value=35 Score=18.66 Aligned_cols=25 Identities=24% Similarity=0.648 Sum_probs=17.0
Q ss_pred EEcCCCCeeeeecCCCCeEecCCCCc
Q 034324 26 LVCSGCRNLLLYPVGATSVCCAVCNA 51 (98)
Q Consensus 26 lvC~gCr~lL~Yp~GA~~VrC~~C~t 51 (98)
-.|.-|+.+| +-.+....+|..|..
T Consensus 12 t~C~~C~~~l-~g~~~qg~~C~~C~~ 36 (50)
T 1ptq_A 12 TFCDHCGSLL-WGLVKQGLKCEDCGM 36 (50)
T ss_dssp CBCTTTCCBC-CSSSSCEEEETTTCC
T ss_pred CCcCCCCcee-eccCCccCEeCCCCC
Confidence 3577787776 544567778887764
No 43
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=28.53 E-value=26 Score=30.20 Aligned_cols=33 Identities=27% Similarity=0.687 Sum_probs=24.4
Q ss_pred EEEeCCcCceE----EeecCCCeEECCCCCccccccc
Q 034324 64 QLVCGGCHTLL----MYIRGATSVQCSCCHTVNLALE 96 (98)
Q Consensus 64 ql~Cg~Cr~lL----~yP~GA~sVrC~~C~~Vt~v~~ 96 (98)
=+.|..||..| .+-.|....+|..|...|.+.+
T Consensus 94 pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~ 130 (766)
T 3eh2_A 94 PLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPP 130 (766)
T ss_dssp CCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCT
T ss_pred CCccCCCCCEeCCceEEecCCCEEEeccccccCCCCH
Confidence 35777777755 3445778999999999998753
No 44
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=28.14 E-value=23 Score=30.51 Aligned_cols=33 Identities=27% Similarity=0.673 Sum_probs=25.2
Q ss_pred EEEeCCcCceE----EeecCCCeEECCCCCccccccc
Q 034324 64 QLVCGGCHTLL----MYIRGATSVQCSCCHTVNLALE 96 (98)
Q Consensus 64 ql~Cg~Cr~lL----~yP~GA~sVrC~~C~~Vt~v~~ 96 (98)
=+.|..||..| .+-.|....+|..|...|.+.+
T Consensus 98 pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~ 134 (770)
T 3efo_B 98 PVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPP 134 (770)
T ss_dssp SCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCG
T ss_pred CCccCCCCCCcCCceEEecCCCEEEeccccccCCCch
Confidence 36787787765 3556778999999999998753
No 45
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=28.14 E-value=39 Score=22.30 Aligned_cols=10 Identities=20% Similarity=0.664 Sum_probs=4.8
Q ss_pred eEECCCCCcc
Q 034324 82 SVQCSCCHTV 91 (98)
Q Consensus 82 sVrC~~C~~V 91 (98)
.+.|..|.++
T Consensus 26 ~~~C~~C~y~ 35 (113)
T 3h0g_I 26 RLACRNCDYS 35 (113)
T ss_dssp CEECSSSCCE
T ss_pred EEECCCCCCe
Confidence 3455555444
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.34 E-value=25 Score=19.72 Aligned_cols=27 Identities=22% Similarity=0.537 Sum_probs=17.7
Q ss_pred eeEEEeCCcCceEEeecCCCeEECCCCCcccccc
Q 034324 62 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAL 95 (98)
Q Consensus 62 ~aql~Cg~Cr~lL~yP~GA~sVrC~~C~~Vt~v~ 95 (98)
=+|..|..|-.. .+.+|+.|+......
T Consensus 24 CgH~fC~~Ci~~-------~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 24 CLHTLCSGCLEA-------SGMQCPICQAPWPLG 50 (56)
T ss_dssp TSCCSBTTTCSS-------SSSSCSSCCSSSSCC
T ss_pred CCCcccHHHHcc-------CCCCCCcCCcEeecC
Confidence 356667777554 356788888765543
No 47
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=25.98 E-value=31 Score=29.69 Aligned_cols=32 Identities=25% Similarity=0.588 Sum_probs=25.9
Q ss_pred eEEcCCCCeee----eecCCCCeEecCCCCccccCCC
Q 034324 25 QLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (98)
Q Consensus 25 QlvC~gCr~lL----~Yp~GA~~VrC~~C~tVn~vp~ 57 (98)
=+.|..||..| .+..| ...+|..|...|.+|+
T Consensus 85 p~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~ 120 (751)
T 3eh1_A 85 IVRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPE 120 (751)
T ss_dssp CCBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCG
T ss_pred CCcccCccCEeCCceEEecC-CEEEcccccCCCCCCH
Confidence 48999999876 33455 8999999999999875
No 48
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.78 E-value=22 Score=27.35 Aligned_cols=29 Identities=24% Similarity=0.558 Sum_probs=16.2
Q ss_pred EecCCCCccc--cCCCCCCceeEEEeCCcCceE
Q 034324 44 VCCAVCNAVT--AVPPPGTEMAQLVCGGCHTLL 74 (98)
Q Consensus 44 VrC~~C~tVn--~vp~~~~~~aql~Cg~Cr~lL 74 (98)
..|+.|...+ .+- -.+.+.++|+.|+..|
T Consensus 22 ~~Cp~Cg~~~~~iv~--D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVYPPKIVE--RFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCSCCCCCC--CSSSCSCCCSSSCCCC
T ss_pred CcCcCCCCCCCceEE--ECCCCCEecCCCCeEc
Confidence 3577775542 221 2345667777777666
No 49
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.44 E-value=1.3e+02 Score=19.37 Aligned_cols=57 Identities=23% Similarity=0.477 Sum_probs=41.4
Q ss_pred EEcCCCCeeeeecCCCCeEecCCCCccccCCCCCCceeEEEeCCcCceE--EeecCCCeEECCCCCccc
Q 034324 26 LVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL--MYIRGATSVQCSCCHTVN 92 (98)
Q Consensus 26 lvC~gCr~lL~Yp~GA~~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL--~yP~GA~sVrC~~C~~Vt 92 (98)
+.|-.|+..|.- .+....|..|+.- .. .+..|-.|+..| .=-=||.+.-|..|+..-
T Consensus 3 ~~CP~C~~~l~~--~~~~~~C~~C~~~-~~-------~~afCPeCgq~Le~lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 3 ITCPVCHHALER--NGDTAHCETCAKD-FS-------LQALCPDCRQPLQVLKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp CCCSSSCSCCEE--CSSEEECTTTCCE-EE-------EEEECSSSCSCCCEEEETTEEEECCTTTTCCC
T ss_pred CCCCCCCCcccc--CCCceECcccccc-CC-------CcccCcchhhHHHHHHhcCCcCeeeccCCCEe
Confidence 778889988875 3447789999862 21 233888888888 445688888898888653
No 50
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=25.05 E-value=23 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.430 Sum_probs=27.3
Q ss_pred CCCCceeEEcCCCCee-------eeecCCCCeEecCCCCcccc
Q 034324 19 ANGAQSQLVCSGCRNL-------LLYPVGATSVCCAVCNAVTA 54 (98)
Q Consensus 19 ~~~~~sQlvC~gCr~l-------L~Yp~GA~~VrC~~C~tVn~ 54 (98)
...++-+-.|..|.+- .+|-+|..-|+|+.|+.--.
T Consensus 7 ~~~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~Hl 49 (100)
T 2e2z_A 7 KPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHL 49 (100)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEE
T ss_pred CCcEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceE
Confidence 4456677788888763 56889999999999987643
No 51
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=24.99 E-value=35 Score=21.53 Aligned_cols=15 Identities=20% Similarity=0.731 Sum_probs=12.4
Q ss_pred CceeEEcCCCCeeee
Q 034324 22 AQSQLVCSGCRNLLL 36 (98)
Q Consensus 22 ~~sQlvC~gCr~lL~ 36 (98)
...++.|.+|+++|.
T Consensus 17 ~~~~v~C~~CKk~lq 31 (62)
T 2das_A 17 KPAKITCANCKKPLQ 31 (62)
T ss_dssp SCSSCBCTTTCCBCC
T ss_pred CccccChhhccchhh
Confidence 346899999999986
No 52
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=24.95 E-value=36 Score=20.81 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=16.6
Q ss_pred EEeCCcCceEEeecCCCeEECCCCCcc
Q 034324 65 LVCGGCHTLLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 65 l~Cg~Cr~lL~yP~GA~sVrC~~C~~V 91 (98)
..|..|..+| +..-++|..|.+.
T Consensus 36 t~C~~C~~~l----~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 36 GWCDLCGREV----LRQALRCANCKFT 58 (72)
T ss_dssp CBCTTTSSBC----SSCCEECTTSSCE
T ss_pred cchhhhhHHH----HhCcCccCCCCCe
Confidence 4588888877 5666788888654
No 53
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.91 E-value=23 Score=22.22 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=4.3
Q ss_pred eEECCCCCc
Q 034324 82 SVQCSCCHT 90 (98)
Q Consensus 82 sVrC~~C~~ 90 (98)
.++|.-|.+
T Consensus 45 ~irCp~CG~ 53 (70)
T 1twf_L 45 AVRCKDCGH 53 (70)
T ss_dssp TTCCSSSCC
T ss_pred CccCCCCCc
Confidence 345555544
No 54
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.70 E-value=18 Score=24.98 Aligned_cols=53 Identities=26% Similarity=0.451 Sum_probs=36.4
Q ss_pred eeEEcCCCCeeeeecCCCCeEecCCCCccccCCCCCCceeEEEeCCcCceEEeecCCCeEECCCCCc
Q 034324 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHT 90 (98)
Q Consensus 24 sQlvC~gCr~lL~Yp~GA~~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~lL~yP~GA~sVrC~~C~~ 90 (98)
++-.|.-|...+- ..+.....|..|+ +-+|..|+...-+-.......|..|+-
T Consensus 54 ~~~~C~~C~~~~g-~l~~~g~~C~~C~-------------~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLG-MLGSASVVCEDCK-------------KNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCS-TTSCCEEECTTTC-------------CEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcc-cccCCCCCCCCCC-------------cccccccCCccCCCCCccceechhhHH
Confidence 4556888888775 3455667888775 357888888765555566777777754
No 55
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=23.61 E-value=76 Score=27.23 Aligned_cols=36 Identities=28% Similarity=0.590 Sum_probs=29.0
Q ss_pred CceeEEcCC--CCeee----eecCCCCeEecCCCCccccCCC
Q 034324 22 AQSQLVCSG--CRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (98)
Q Consensus 22 ~~sQlvC~g--Cr~lL----~Yp~GA~~VrC~~C~tVn~vp~ 57 (98)
+.+-+.|.. ||..| .+-.|....+|..|+..|.+|+
T Consensus 59 ~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~ 100 (769)
T 2nut_A 59 QYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 100 (769)
T ss_dssp CSCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSCCEEECCG
T ss_pred CCCCCcCCCCCCCeEECCceEEeCCCCEEEccCCCCCCCCCh
Confidence 345789998 99876 3557888999999999999875
No 56
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.43 E-value=45 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=9.0
Q ss_pred eEEEeCCcCceEEeec
Q 034324 63 AQLVCGGCHTLLMYIR 78 (98)
Q Consensus 63 aql~Cg~Cr~lL~yP~ 78 (98)
+.++|..|+ +.||.
T Consensus 27 g~LvC~~c~--~~YPI 40 (67)
T 2jny_A 27 QLLVNERLN--LAYRI 40 (67)
T ss_dssp TEEEETTTT--EEEEE
T ss_pred CEEEcCCCC--ccccC
Confidence 567777775 55664
No 57
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=23.42 E-value=44 Score=19.96 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=19.3
Q ss_pred EEeCCcCceEEeecCCCeEECCCCCccc
Q 034324 65 LVCGGCHTLLMYIRGATSVQCSCCHTVN 92 (98)
Q Consensus 65 l~Cg~Cr~lL~yP~GA~sVrC~~C~~Vt 92 (98)
..|.-|...+- .|....||..|..+-
T Consensus 20 ~~C~~Cg~~i~--~gkq~~kC~dC~~~c 45 (61)
T 4b6d_A 20 ESCVPCGKRIK--FGKLSLKCRDCRVVS 45 (61)
T ss_dssp EECTTTCCEEC--TTCEEEEESSSSCEE
T ss_pred cccccccCEEE--EeeEeeECCCCCCeE
Confidence 57888877663 678888888887654
No 58
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=23.32 E-value=37 Score=29.23 Aligned_cols=31 Identities=29% Similarity=0.620 Sum_probs=21.2
Q ss_pred EEeCCcCceE----EeecCCCeEECCCCCccccccc
Q 034324 65 LVCGGCHTLL----MYIRGATSVQCSCCHTVNLALE 96 (98)
Q Consensus 65 l~Cg~Cr~lL----~yP~GA~sVrC~~C~~Vt~v~~ 96 (98)
+.|..||..| .+-.| ...+|..|...|.+.+
T Consensus 86 ~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~ 120 (751)
T 3eh1_A 86 VRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPE 120 (751)
T ss_dssp CBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCG
T ss_pred CcccCccCEeCCceEEecC-CEEEcccccCCCCCCH
Confidence 5666666644 23334 8999999999998743
No 59
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=21.72 E-value=42 Score=21.26 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=17.9
Q ss_pred ceeEEcCCCCeeeeecCCCCeEecCCCCccc
Q 034324 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVT 53 (98)
Q Consensus 23 ~sQlvC~gCr~lL~Yp~GA~~VrC~~C~tVn 53 (98)
.++..|..|+.|+ ..-.|++|....
T Consensus 9 ~~~~AC~~C~~~~------~~~~CPnC~s~~ 33 (69)
T 1ryq_A 9 SSEKACRHCHYIT------SEDRCPVCGSRD 33 (69)
T ss_dssp --CEEETTTCBEE------SSSSCTTTCCCC
T ss_pred chhhhHHhCCccc------cCCcCCCccCCc
Confidence 5678899999977 555799997554
No 60
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=21.47 E-value=67 Score=27.53 Aligned_cols=35 Identities=34% Similarity=0.820 Sum_probs=28.7
Q ss_pred ceeEEcCC--CCeeee----ecCCCCeEecCCCCccccCCC
Q 034324 23 QSQLVCSG--CRNLLL----YPVGATSVCCAVCNAVTAVPP 57 (98)
Q Consensus 23 ~sQlvC~g--Cr~lL~----Yp~GA~~VrC~~C~tVn~vp~ 57 (98)
..-+.|.. ||..|- +-.|....+|..|+..|.+|+
T Consensus 51 ~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~ 91 (768)
T 1m2o_A 51 YNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPP 91 (768)
T ss_dssp SCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTCCCCBCCG
T ss_pred CCCCccCCCCCCeEECCceEEeCCCCEEEcccCCCCCCCCh
Confidence 35689998 999763 557888999999999999875
No 61
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.07 E-value=21 Score=21.26 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=16.9
Q ss_pred CeEecCCCCccccCCCCCCceeEEEeCCcCce
Q 034324 42 TSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTL 73 (98)
Q Consensus 42 ~~VrC~~C~tVn~vp~~~~~~aql~Cg~Cr~l 73 (98)
..-+|..|+..|.- .+-.|..|.++
T Consensus 12 D~WkC~~C~~~N~P-------l~r~C~rCw~L 36 (46)
T 2c6a_A 12 DYWKCTSCNEMNPP-------LPSHCNRCWAL 36 (46)
T ss_dssp GCEECTTTCCEECS-------SCSSCTTTCCC
T ss_pred ceEecccccccCCC-------ccchhhHHHhh
Confidence 45678999988852 33467777654
No 62
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=20.82 E-value=22 Score=20.75 Aligned_cols=22 Identities=32% Similarity=0.819 Sum_probs=14.4
Q ss_pred EEeCCcCceEEeecCCCeEECCCCCcc
Q 034324 65 LVCGGCHTLLMYIRGATSVQCSCCHTV 91 (98)
Q Consensus 65 l~Cg~Cr~lL~yP~GA~sVrC~~C~~V 91 (98)
-.|..|+.+|+ .| ++|..|.+.
T Consensus 15 t~C~~C~k~i~--~G---~kC~~Ck~~ 36 (49)
T 1kbe_A 15 QVCNVCQKSMI--FG---VKCKHCRLK 36 (49)
T ss_dssp CCCSSSCCSSC--CE---EEETTTTEE
T ss_pred cCccccCceeE--Cc---CCCCCCCCc
Confidence 35777777775 23 677777654
Done!