BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034326
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P63966|DNAJ2_MYCTU Chaperone protein DnaJ 2 OS=Mycobacterium tuberculosis GN=dnaJ2
PE=3 SV=1
Length = 382
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 50 VEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRI-----YRRCPTCRAVSTPI 98
V+ ++C+ C GKG + CD CGG+ Q + + R CPTCR V I
Sbjct: 139 VDTAVLCDRCQGKGTNGDSVPIPCDTCGGRGEVQTVQRSLLGQMLTSRPCPTCRGVGVVI 198
>sp|P63967|DNAJ2_MYCBO Chaperone protein DnaJ 2 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dnaJ2 PE=3 SV=1
Length = 382
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 50 VEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRI-----YRRCPTCRAVSTPI 98
V+ ++C+ C GKG + CD CGG+ Q + + R CPTCR V I
Sbjct: 139 VDTAVLCDRCQGKGTNGDSVPIPCDTCGGRGEVQTVQRSLLGQMLTSRPCPTCRGVGVVI 198
>sp|Q73XZ6|DNAJ1_MYCPA Chaperone protein DnaJ 1 OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=dnaJ1 PE=3 SV=1
Length = 381
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 50 VEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRI-----YRRCPTCRAVSTPI 98
V+ ++C+ C+GKG + CD CGG+ Q + + R CPTCR V I
Sbjct: 139 VDTAVLCDRCHGKGTNGDSAPVPCDTCGGRGEVQTVQRSLLGQVMTSRPCPTCRGVGVVI 198
>sp|Q49762|DNAJ2_MYCLE Chaperone protein DnaJ 2 OS=Mycobacterium leprae (strain TN)
GN=dnaJ2 PE=3 SV=1
Length = 378
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 50 VEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRI-----YRRCPTCRAVSTPI 98
V+ ++C+ C GKG + CD CGG+ Q + + R CPTCR V I
Sbjct: 135 VDTAVLCDRCQGKGTNGDSAPIPCDTCGGRGEVQTVQRSLLGQMVTARPCPTCRGVGVVI 194
>sp|Q6A997|DNAJ1_PROAC Chaperone protein DnaJ 1 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=dnaJ1 PE=3 SV=1
Length = 392
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 49 EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-----RIYRRCPTCRAVSTP 97
EV+ ++C C GKG + CD C G+ + Q + R + CPTC T
Sbjct: 140 EVDTAVVCPKCQGKGAQSGSEPVTCDTCQGRGEVITVQRSFLGDIRTSQPCPTCHGYGTV 199
Query: 98 I 98
I
Sbjct: 200 I 200
>sp|B6IVA5|DNAJ_RHOCS Chaperone protein DnaJ OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=dnaJ PE=3 SV=1
Length = 379
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 50 VEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN--RIYRRCPTCRAVSTPI 98
V + CESCNG G + C C G V+AQ I R CP C V I
Sbjct: 144 VPTSVACESCNGTGAEGGSTPIACPTCNGHG-KVRAQQGFFTIERTCPACHGVGRVI 199
>sp|Q5WT86|SYFA_LEGPL Phenylalanine--tRNA ligase alpha subunit OS=Legionella pneumophila
(strain Lens) GN=pheS PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 10 ASLAKVK-----LFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGW 64
A+LA +K FS + R RPS+ ++P+ EV I C CNGKG
Sbjct: 219 ATLAGLKGLLQDFFSYFFGRELALRFRPSYFPFTEPS--------AEVDIECTQCNGKGC 270
Query: 65 LVCDFCG 71
C F G
Sbjct: 271 RSCKFTG 277
>sp|Q5ZS08|SYFA_LEGPH Phenylalanine--tRNA ligase alpha subunit OS=Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 /
DSM 7513) GN=pheS PE=3 SV=1
Length = 342
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 35 SLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
+L+ +P+ + EV I C CNGKG C F G
Sbjct: 245 ALRFRPSYFPFTEPSAEVDIECTQCNGKGCRSCKFTG 281
>sp|A5IAL3|SYFA_LEGPC Phenylalanine--tRNA ligase alpha subunit OS=Legionella pneumophila
(strain Corby) GN=pheS PE=3 SV=1
Length = 338
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 35 SLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
+L+ +P+ + EV I C CNGKG C F G
Sbjct: 241 ALRFRPSYFPFTEPSAEVDIECTQCNGKGCRSCKFTG 277
>sp|Q5X1H7|SYFA_LEGPA Phenylalanine--tRNA ligase alpha subunit OS=Legionella pneumophila
(strain Paris) GN=pheS PE=3 SV=1
Length = 338
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 35 SLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
+L+ +P+ + EV I C CNGKG C F G
Sbjct: 241 ALRFRPSYFPFTEPSAEVDIECTQCNGKGCRSCKFTG 277
>sp|Q21CI1|DNAJ_RHOPB Chaperone protein DnaJ OS=Rhodopseudomonas palustris (strain
BisB18) GN=dnaJ PE=3 SV=1
Length = 379
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 49 EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQN-NRIYRRCPTCRA 93
E+ V + CESC+G G C CGG +AQ + R CP C+
Sbjct: 141 EIPVSVTCESCSGTGAKAGTKPKTCSMCGGAGRVRQAQGFFTLERTCPGCQG 192
>sp|A8ZZ70|SYFA_DESOH Phenylalanine--tRNA ligase alpha subunit OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=pheS PE=3 SV=1
Length = 334
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 32 PSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
P SL+ +P+ + EV I C +C GKG +C G
Sbjct: 234 PETSLRFRPSYFPFTEPSAEVDIRCVACRGKGCRICSHTG 273
>sp|B6YQ38|SYFA_AZOPC Phenylalanine--tRNA ligase alpha subunit OS=Azobacteroides
pseudotrichonymphae genomovar. CFP2 GN=pheS PE=3 SV=1
Length = 339
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 10 ASLAKVKLF--SIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVC 67
A L +V +F M S ++R RPS ++P+ E+ IMC C GKG C
Sbjct: 219 ADLRQVLVFFAKEMFDSGINTRLRPSFFPFTEPS--------AEMDIMCNLCRGKGCSFC 270
Query: 68 DFCG 71
F G
Sbjct: 271 KFTG 274
>sp|Q2J319|DNAJ_RHOP2 Chaperone protein DnaJ OS=Rhodopseudomonas palustris (strain HaA2)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 49 EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQN-NRIYRRCPTCRA 93
E+ V + CESC+G G C CGG +AQ + R CP+C+
Sbjct: 141 EIPVSVTCESCSGTGAKAGTKPKTCSTCGGAGRVRQAQGFFTLERTCPSCQG 192
>sp|Q6F165|SYFA_MESFL Phenylalanine--tRNA ligase alpha subunit OS=Mesoplasma florum
(strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1)
GN=pheS PE=3 SV=1
Length = 350
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 35 SLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
+++ +P+L + VEV + C C+GKG +C + G
Sbjct: 248 NIRLRPSLFPFTEPSVEVDVSCFKCSGKGCSICKYSG 284
>sp|A7E316|K226L_BOVIN Uncharacterized protein KIAA0226-like OS=Bos taurus GN=KIAA0226L
PE=2 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 36 LKSKPALCAPVKQEV-----EVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPT 90
+K K L AP+ +++ E CE C GKG+ +C+FC Q RRC
Sbjct: 570 VKVKKGLLAPLLKDILKASLEHVASCELCQGKGF-ICEFCRSTAVIFPFQTATC-RRCSA 627
Query: 91 CRA 93
CRA
Sbjct: 628 CRA 630
>sp|Q1WTY9|SYFA_LACS1 Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus
salivarius (strain UCC118) GN=pheS PE=3 SV=1
Length = 348
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 29 RSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
R RPS+ ++P+ E+ + C CNGKG VC + G
Sbjct: 249 RMRPSYFPFTEPS--------AEIDVSCFKCNGKGCSVCKYTG 283
>sp|A6QBG7|DNAJ_SULNB Chaperone protein DnaJ OS=Sulfurovum sp. (strain NBC37-1) GN=dnaJ
PE=3 SV=1
Length = 377
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 20/58 (34%)
Query: 56 CESCNGKG-----WLVCDFCGGQKTNVKAQ---------------NNRIYRRCPTCRA 93
CE C G G CD+CGGQ + Q +I ++CP+C+
Sbjct: 151 CEECGGTGAKDGKMETCDYCGGQGQVLMRQGPMQFAQTCPKCHGEGRKIAQKCPSCQG 208
>sp|Q5YZX0|DNAJ1_NOCFA Chaperone protein DnaJ 1 OS=Nocardia farcinica (strain IFM 10152)
GN=dnaJ1 PE=3 SV=1
Length = 384
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 20 IMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGW------LVCDFCGGQ 73
+ P + S R+R S ++ A+ V+ ++C++C+G G + C+ CGG
Sbjct: 113 VQPGADSLLRTRLS---LAECAVGVTKHLTVDTAVLCDACHGSGTHGNSKPVRCETCGGA 169
Query: 74 KTNVKAQNNRI-----YRRCPTCRAVSTPI 98
Q + + R CPTCR I
Sbjct: 170 GEVQSVQRSFLGQVLTSRPCPTCRGAGETI 199
>sp|P39102|XDJ1_YEAST DnaJ protein homolog XDJ1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XDJ1 PE=1 SV=2
Length = 459
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 23/75 (30%)
Query: 34 HSLKSKPALCAPVKQEVEVGIMCESCNGKG----------------WLVCDFCGGQ-KTN 76
H KP V +VE CESC GKG W+VC+ C G+ K
Sbjct: 163 HGSGWKPKRKIHVTHDVE----CESCAGKGSKERLKRFGPGLVASQWVVCEKCNGKGKYT 218
Query: 77 VKAQNNRIYRRCPTC 91
+ +N + + CP C
Sbjct: 219 KRPKNPKNF--CPDC 231
>sp|B3WEQ6|DNAJ_LACCB Chaperone protein DnaJ OS=Lactobacillus casei (strain BL23) GN=dnaJ
PE=3 SV=1
Length = 387
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 22/53 (41%)
Query: 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTC 91
+ C C+G G++ VCD CGG +K +CPTC
Sbjct: 171 VTCHKCHGSGYIQVQRNTAFGAMMTRQVCDVCGGTGKEIK-------EKCPTC 216
>sp|Q038N5|DNAJ_LACC3 Chaperone protein DnaJ OS=Lactobacillus casei (strain ATCC 334)
GN=dnaJ PE=3 SV=1
Length = 387
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 22/53 (41%)
Query: 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTC 91
+ C C+G G++ VCD CGG +K +CPTC
Sbjct: 171 VTCHKCHGSGYIQVQRNTAFGAMMTRQVCDVCGGTGKEIK-------EKCPTC 216
>sp|A8YWB7|SYFA_LACH4 Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus
helveticus (strain DPC 4571) GN=pheS PE=3 SV=1
Length = 349
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 27 SSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
++R RPS+ ++P+ VE+ + C +C+GKG +C + G
Sbjct: 247 ATRLRPSYFPFTEPS--------VEMDVSCFNCDGKGCPICKYTG 283
>sp|Q5FIY6|SYFA_LACAC Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=pheS PE=3 SV=1
Length = 349
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 27 SSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
++R RPS+ ++P+ VE+ + C +C+GKG +C + G
Sbjct: 247 ATRLRPSYFPFTEPS--------VEMDVSCFNCDGKGCPICKYTG 283
>sp|O08356|DNAJ_RHOS7 Chaperone protein DnaJ OS=Rhodopseudomonas sp. (strain No.7)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 49 EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQN-NRIYRRCPTCRA 93
E+ V + CE+C+G G C CGG +AQ + R CP+C+
Sbjct: 141 EIPVSVTCEACSGTGAKAGTKPKTCSTCGGAGRVRQAQGFFTLERTCPSCQG 192
>sp|B3Q973|DNAJ_RHOPT Chaperone protein DnaJ OS=Rhodopseudomonas palustris (strain TIE-1)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 49 EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQN-NRIYRRCPTCRA 93
E+ V + CE+C+G G C CGG +AQ + R CP+C+
Sbjct: 141 EIPVSVTCEACSGTGAKAGTKPKTCSTCGGAGRVRQAQGFFTLERTCPSCQG 192
>sp|Q6NCY3|DNAJ_RHOPA Chaperone protein DnaJ OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=dnaJ PE=3 SV=1
Length = 379
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 49 EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQN-NRIYRRCPTCRA 93
E+ V + CE+C+G G C CGG +AQ + R CP+C+
Sbjct: 141 EIPVSVTCEACSGTGAKAGTKPKTCSTCGGAGRVRQAQGFFTLERTCPSCQG 192
>sp|Q9H714|K226L_HUMAN Uncharacterized protein KIAA0226-like OS=Homo sapiens GN=KIAA0226L
PE=1 SV=3
Length = 662
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 36 LKSKPALCAPVKQEVEVGIM-----CESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPT 90
++ K L AP+ +++ + CE C GKG+ +C+FC Q RRC
Sbjct: 569 VRIKKGLLAPLLKDILKASLAHVAGCELCQGKGF-ICEFCQNTTVIFPFQTATC-RRCSA 626
Query: 91 CRA 93
CRA
Sbjct: 627 CRA 629
>sp|O28552|DP2L_ARCFU DNA polymerase II large subunit OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=polC PE=3 SV=1
Length = 1143
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 47 KQEVEVGIMCESCNGKG----WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVST 96
K E+EV I C G WL CD CG ++Y CP+CR +T
Sbjct: 639 KGEIEVEIAIRKCPQCGKETFWLKCDVCG-------ELTEQLY-YCPSCRMKNT 684
>sp|Q74IE1|SYFA_LACJO Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus johnsonii
(strain CNCM I-12250 / La1 / NCC 533) GN=pheS PE=3 SV=1
Length = 349
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 28 SRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
+R RPS+ ++P+ VE+ + C +C+GKG +C + G
Sbjct: 248 TRLRPSYFPFTEPS--------VEMDVSCFNCDGKGCPICKYTG 283
>sp|Q041W8|SYFA_LACGA Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus gasseri
(strain ATCC 33323 / DSM 20243) GN=pheS PE=3 SV=1
Length = 349
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 28 SRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
+R RPS+ ++P+ VE+ + C +C+GKG +C + G
Sbjct: 248 TRLRPSYFPFTEPS--------VEMDVSCFNCDGKGCPICKYTG 283
>sp|B3WF19|SYFA_LACCB Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus casei
(strain BL23) GN=pheS PE=3 SV=1
Length = 348
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 29 RSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
R RPS+ ++P+ VEV + C C GKG VC + G
Sbjct: 249 RLRPSYFPFTEPS--------VEVDVSCFRCGGKGCPVCKYTG 283
>sp|Q038C7|SYFA_LACC3 Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus casei
(strain ATCC 334) GN=pheS PE=3 SV=1
Length = 348
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 29 RSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
R RPS+ ++P+ VEV + C C GKG VC + G
Sbjct: 249 RLRPSYFPFTEPS--------VEVDVSCFRCGGKGCPVCKYTG 283
>sp|O66921|DNAJ2_AQUAE Chaperone protein DnaJ 2 OS=Aquifex aeolicus (strain VF5) GN=dnaJ2
PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 49 EVEVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQNN---RIYRRCPTC 91
EVE + C +C G G+ C CGG+ V Q N ++ + CPTC
Sbjct: 149 EVEREVPCSACGGTGYDESKSRTCPTCGGRGETV--QGNWFFQVRQTCPTC 197
>sp|B0CAZ0|DNAJ_ACAM1 Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017)
GN=dnaJ PE=3 SV=1
Length = 374
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 55 MCESCNGKGWLV---CDFCGGQKTN 76
+C +CNG+G +V CD CGG+ N
Sbjct: 188 VCPTCNGQGQVVTEKCDSCGGRGQN 212
>sp|Q5FSL4|DNAJ_GLUOX Chaperone protein DnaJ OS=Gluconobacter oxydans (strain 621H)
GN=dnaJ PE=3 SV=1
Length = 380
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 49 EVEVGIMCESCNGKGWL-------VCDFCGGQKTNVKAQNN--RIYRRCPTC----RAVS 95
EV + CE+C+G G C C G V+AQ + R CPTC R V+
Sbjct: 142 EVRTRVTCEACHGSGSADPKAGSSTCPTCHG-AGKVRAQQGFFLVERPCPTCHGSGRTVA 200
Query: 96 TP 97
P
Sbjct: 201 NP 202
>sp|Q38VV3|SYFA_LACSS Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus sakei
subsp. sakei (strain 23K) GN=pheS PE=3 SV=1
Length = 348
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 29 RSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
R RPS+ ++P+ VEV I C CNG+G VC G
Sbjct: 249 RFRPSYFPFTEPS--------VEVDISCFRCNGEGCSVCKQTG 283
>sp|A6LA92|SYFA_PARD8 Phenylalanine--tRNA ligase alpha subunit OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=pheS PE=3 SV=1
Length = 339
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 21 MPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGG 72
M S + R RPS+ ++P+ E+ I C C GKG C FC G
Sbjct: 232 MFSPDTKIRLRPSYFPFTEPS--------AEMDISCNICGGKG---CPFCKG 272
>sp|Q5WEJ5|SYFA_BACSK Phenylalanine--tRNA ligase alpha subunit OS=Bacillus clausii
(strain KSM-K16) GN=pheS PE=3 SV=1
Length = 344
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 35 SLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
S++ +P+ + VEV + C C+GKG VC G
Sbjct: 244 SIRLRPSFFPFTEPSVEVDVSCGICSGKGCRVCKQSG 280
>sp|Q02WL3|SYFA_LACLS Phenylalanine--tRNA ligase alpha subunit OS=Lactococcus lactis
subsp. cremoris (strain SK11) GN=pheS PE=3 SV=1
Length = 345
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 29 RSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
R RPS+ ++P+ VEV I C C GKG VC G
Sbjct: 249 RWRPSYFPFTEPS--------VEVDISCFKCGGKGCNVCKHTG 283
>sp|A2RN75|SYFA_LACLM Phenylalanine--tRNA ligase alpha subunit OS=Lactococcus lactis
subsp. cremoris (strain MG1363) GN=pheS PE=3 SV=1
Length = 345
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 29 RSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
R RPS+ ++P+ VEV I C C GKG VC G
Sbjct: 249 RWRPSYFPFTEPS--------VEVDISCFKCGGKGCNVCKHTG 283
>sp|Q9CEB4|SYFA_LACLA Phenylalanine--tRNA ligase alpha subunit OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=pheS PE=3 SV=1
Length = 346
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 29 RSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
R RPS+ ++P+ VEV I C C GKG VC G
Sbjct: 249 RWRPSYFPFTEPS--------VEVDISCFKCGGKGCNVCKHTG 283
>sp|B4S3C8|SYFA_PROA2 Phenylalanine--tRNA ligase alpha subunit OS=Prosthecochloris
aestuarii (strain DSM 271 / SK 413) GN=pheS PE=3 SV=1
Length = 343
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 36 LKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
L+ +P+ + EV + C CNGKG VC G
Sbjct: 245 LRFRPSFFPFTEPSAEVDVTCYLCNGKGCKVCKQSG 280
>sp|Q82VV5|SYFA_NITEU Phenylalanine--tRNA ligase alpha subunit OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=pheS PE=3 SV=1
Length = 345
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 35 SLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCG 71
S++ +P+ + E+ I C CNGKG VC G
Sbjct: 247 SVRFRPSFFPFTEPSAEMDIACVMCNGKGCRVCGETG 283
>sp|O52164|DNAJ2_STRAL Chaperone protein DnaJ 2 OS=Streptomyces albus G GN=dnaJ2 PE=3 SV=1
Length = 379
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 49 EVEVGIMCESCNGKGWL------VCDFCGG-----QKTNVKAQNNRIYRRCPTCRAVSTP 97
+V+ ++C +CNG+G CD C G Q T R CP C+ +T
Sbjct: 136 QVDTAVVCNTCNGEGAAPGTSAQTCDMCRGRGEVSQVTRSFLGQVMTSRPCPQCQGFATV 195
Query: 98 I 98
+
Sbjct: 196 V 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,140,545
Number of Sequences: 539616
Number of extensions: 1262650
Number of successful extensions: 5373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 5317
Number of HSP's gapped (non-prelim): 99
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)