Query 034326
Match_columns 98
No_of_seqs 15 out of 17
Neff 1.7
Searched_HMMs 46136
Date Fri Mar 29 12:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03031 GRX_GRX_like Glutaredo 98.3 3.6E-07 7.7E-12 65.5 3.1 45 53-97 99-145 (147)
2 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.3 0.00024 5.2E-09 44.2 2.8 43 56-98 1-54 (66)
3 PLN03165 chaperone protein dna 96.8 0.00075 1.6E-08 47.6 2.2 48 50-97 38-87 (111)
4 PRK10767 chaperone protein Dna 96.5 0.0015 3.3E-08 51.2 2.3 21 54-74 143-169 (371)
5 PRK14300 chaperone protein Dna 96.5 0.0018 3.8E-08 51.2 2.3 24 54-77 146-175 (372)
6 TIGR02349 DnaJ_bact chaperone 96.4 0.0021 4.5E-08 49.9 2.3 11 54-64 144-154 (354)
7 PRK14277 chaperone protein Dna 96.4 0.0021 4.4E-08 51.1 2.2 21 54-74 156-182 (386)
8 PRK14282 chaperone protein Dna 96.4 0.0023 5E-08 50.5 2.3 22 54-75 153-180 (369)
9 PRK14279 chaperone protein Dna 96.4 0.0021 4.6E-08 51.4 2.2 21 54-74 174-200 (392)
10 PRK14298 chaperone protein Dna 96.3 0.0026 5.7E-08 50.6 2.5 22 53-74 141-168 (377)
11 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.3 0.0034 7.4E-08 39.0 2.3 36 53-95 15-66 (66)
12 PRK14295 chaperone protein Dna 96.3 0.0022 4.8E-08 51.2 1.8 45 53-97 166-217 (389)
13 PRK14288 chaperone protein Dna 96.3 0.0029 6.3E-08 50.1 2.3 11 54-64 141-151 (369)
14 PRK14289 chaperone protein Dna 96.2 0.0032 6.9E-08 49.8 2.3 14 84-97 210-223 (386)
15 PRK14285 chaperone protein Dna 96.2 0.0033 7.1E-08 49.7 2.3 44 54-97 147-197 (365)
16 PRK14280 chaperone protein Dna 96.2 0.0036 7.8E-08 49.6 2.4 21 54-74 144-170 (376)
17 PRK14293 chaperone protein Dna 96.1 0.0043 9.3E-08 49.0 2.4 14 84-97 199-212 (374)
18 PRK14278 chaperone protein Dna 96.1 0.0041 8.9E-08 49.4 2.3 21 54-74 140-166 (378)
19 PRK10767 chaperone protein Dna 96.0 0.0042 9E-08 48.8 2.2 37 54-97 160-207 (371)
20 PRK14294 chaperone protein Dna 96.0 0.0042 9.1E-08 48.9 2.3 45 53-97 144-195 (366)
21 PRK14281 chaperone protein Dna 96.0 0.0047 1E-07 49.4 2.4 21 54-74 164-189 (397)
22 PRK14286 chaperone protein Dna 96.0 0.0046 9.9E-08 49.1 2.2 43 54-96 151-200 (372)
23 PRK14285 chaperone protein Dna 96.0 0.0049 1.1E-07 48.8 2.3 37 54-97 164-211 (365)
24 PRK14276 chaperone protein Dna 95.9 0.0052 1.1E-07 48.8 2.4 21 54-74 147-173 (380)
25 PRK14286 chaperone protein Dna 95.9 0.0047 1E-07 49.0 2.1 37 54-97 168-215 (372)
26 KOG2824 Glutaredoxin-related p 95.9 0.0064 1.4E-07 49.4 2.8 45 53-97 229-274 (281)
27 PRK14283 chaperone protein Dna 95.9 0.0056 1.2E-07 48.4 2.4 45 53-97 146-201 (378)
28 PRK14284 chaperone protein Dna 95.8 0.0067 1.4E-07 48.3 2.6 21 54-74 159-185 (391)
29 PRK14284 chaperone protein Dna 95.8 0.0061 1.3E-07 48.5 2.4 38 53-97 175-223 (391)
30 PRK14296 chaperone protein Dna 95.8 0.0056 1.2E-07 48.7 2.1 23 54-76 150-178 (372)
31 PRK14294 chaperone protein Dna 95.8 0.0061 1.3E-07 48.0 2.3 37 54-97 162-209 (366)
32 PRK14301 chaperone protein Dna 95.8 0.0062 1.3E-07 48.3 2.2 43 54-96 145-194 (373)
33 PRK14300 chaperone protein Dna 95.8 0.006 1.3E-07 48.3 2.1 37 54-97 163-210 (372)
34 PRK14292 chaperone protein Dna 95.7 0.0069 1.5E-07 47.6 2.3 24 67-97 186-209 (371)
35 PRK14290 chaperone protein Dna 95.7 0.0069 1.5E-07 47.7 2.3 44 54-97 150-203 (365)
36 PRK14279 chaperone protein Dna 95.7 0.006 1.3E-07 48.8 1.9 37 54-97 191-238 (392)
37 PRK14301 chaperone protein Dna 95.6 0.0073 1.6E-07 47.9 2.2 37 54-97 162-209 (373)
38 PRK14290 chaperone protein Dna 95.6 0.0082 1.8E-07 47.3 2.2 39 52-97 164-217 (365)
39 PRK14297 chaperone protein Dna 95.5 0.0089 1.9E-07 47.3 2.3 44 54-97 149-203 (380)
40 PRK14298 chaperone protein Dna 95.5 0.0089 1.9E-07 47.6 2.2 37 54-97 159-210 (377)
41 PRK14295 chaperone protein Dna 95.5 0.009 2E-07 47.8 2.2 37 54-97 184-231 (389)
42 PRK14283 chaperone protein Dna 95.4 0.0089 1.9E-07 47.3 2.0 37 54-97 164-215 (378)
43 PRK14291 chaperone protein Dna 95.4 0.01 2.2E-07 47.1 2.2 12 86-97 209-220 (382)
44 PRK14287 chaperone protein Dna 95.2 0.013 2.8E-07 46.5 2.3 44 54-97 139-193 (371)
45 PRK14296 chaperone protein Dna 95.2 0.013 2.8E-07 46.6 2.1 37 54-97 167-218 (372)
46 PRK14288 chaperone protein Dna 95.1 0.013 2.9E-07 46.4 2.1 37 54-97 157-204 (369)
47 PRK14287 chaperone protein Dna 95.1 0.014 3E-07 46.3 2.2 37 54-97 156-207 (371)
48 PRK14282 chaperone protein Dna 95.1 0.014 3E-07 46.1 2.1 37 54-97 170-221 (369)
49 PRK14291 chaperone protein Dna 95.0 0.014 3.1E-07 46.3 2.0 45 53-97 156-207 (382)
50 PRK14280 chaperone protein Dna 95.0 0.015 3.2E-07 46.1 2.1 37 54-97 161-212 (376)
51 COG0484 DnaJ DnaJ-class molecu 95.0 0.016 3.5E-07 48.0 2.4 47 52-98 141-196 (371)
52 PRK14276 chaperone protein Dna 95.0 0.016 3.4E-07 46.1 2.2 37 54-97 164-215 (380)
53 TIGR02349 DnaJ_bact chaperone 94.8 0.018 3.9E-07 44.8 2.1 38 53-97 160-212 (354)
54 PRK14297 chaperone protein Dna 94.8 0.017 3.7E-07 45.7 2.0 37 54-97 166-217 (380)
55 PTZ00037 DnaJ_C chaperone prot 94.7 0.024 5.2E-07 46.4 2.5 21 54-74 151-176 (421)
56 PRK14277 chaperone protein Dna 94.4 0.027 5.9E-07 44.8 2.1 37 54-97 173-224 (386)
57 PTZ00037 DnaJ_C chaperone prot 94.3 0.026 5.5E-07 46.3 1.9 40 53-97 166-220 (421)
58 PRK14281 chaperone protein Dna 94.2 0.029 6.3E-07 44.9 2.0 38 53-97 179-231 (397)
59 PRK14278 chaperone protein Dna 94.0 0.038 8.2E-07 44.0 2.3 37 54-97 157-208 (378)
60 PF14205 Cys_rich_KTR: Cystein 93.9 0.042 9.1E-07 35.8 2.0 33 62-95 2-38 (55)
61 PRK14289 chaperone protein Dna 93.8 0.041 8.9E-07 43.6 2.1 46 53-98 154-210 (386)
62 COG0484 DnaJ DnaJ-class molecu 93.7 0.04 8.6E-07 45.7 1.9 37 54-97 160-209 (371)
63 PRK14293 chaperone protein Dna 93.5 0.061 1.3E-06 42.6 2.5 46 53-98 143-199 (374)
64 PF13901 DUF4206: Domain of un 93.4 0.029 6.3E-07 41.5 0.5 39 54-94 143-181 (202)
65 KOG0712 Molecular chaperone (D 93.3 0.14 3.1E-06 42.1 4.4 22 15-36 120-141 (337)
66 PRK09710 lar restriction allev 92.9 0.068 1.5E-06 35.5 1.7 33 63-95 5-37 (64)
67 KOG2813 Predicted molecular ch 92.2 0.062 1.3E-06 45.8 1.0 19 54-72 199-225 (406)
68 PRK14292 chaperone protein Dna 90.7 0.18 3.9E-06 39.7 2.1 46 53-98 139-196 (371)
69 TIGR03655 anti_R_Lar restricti 89.2 0.3 6.4E-06 29.4 1.8 31 66-96 3-37 (53)
70 PLN03165 chaperone protein dna 88.7 0.27 5.9E-06 34.7 1.6 19 55-73 77-95 (111)
71 PF14354 Lar_restr_allev: Rest 88.6 0.32 6.9E-06 28.9 1.7 29 65-93 4-37 (61)
72 TIGR02642 phage_xxxx uncharact 87.9 0.28 6E-06 37.2 1.3 21 53-73 99-124 (186)
73 KOG4218 Nuclear hormone recept 87.4 0.22 4.9E-06 43.0 0.7 25 49-73 11-41 (475)
74 TIGR02642 phage_xxxx uncharact 87.4 0.35 7.6E-06 36.7 1.6 28 65-97 100-127 (186)
75 PRK00464 nrdR transcriptional 86.9 0.35 7.6E-06 35.5 1.3 28 65-92 1-35 (154)
76 PF13408 Zn_ribbon_recom: Reco 86.7 0.71 1.5E-05 26.4 2.3 34 62-95 3-36 (58)
77 KOG2813 Predicted molecular ch 85.5 0.62 1.3E-05 39.9 2.3 22 55-76 189-210 (406)
78 PF08996 zf-DNA_Pol: DNA Polym 82.8 0.25 5.4E-06 36.0 -1.0 39 52-94 44-110 (188)
79 COG0178 UvrA Excinuclease ATPa 82.5 0.76 1.6E-05 42.7 1.7 28 49-76 726-765 (935)
80 PF04236 Transp_Tc5_C: Tc5 tra 79.2 1.8 3.8E-05 28.0 2.1 34 35-72 12-48 (63)
81 PRK00488 pheS phenylalanyl-tRN 77.4 1.4 3E-05 36.1 1.6 37 26-73 241-277 (339)
82 TIGR00311 aIF-2beta translatio 77.4 2.2 4.8E-05 30.7 2.4 35 63-97 96-130 (133)
83 PF08792 A2L_zn_ribbon: A2L zi 76.8 1.9 4.1E-05 24.7 1.6 12 54-65 4-15 (33)
84 PRK14892 putative transcriptio 76.0 2.1 4.5E-05 29.8 1.9 28 65-92 22-49 (99)
85 PRK12336 translation initiatio 74.7 2.8 6E-05 31.3 2.4 34 64-97 98-131 (201)
86 PF12760 Zn_Tnp_IS1595: Transp 74.4 2.1 4.4E-05 25.0 1.3 32 59-93 14-45 (46)
87 PRK03988 translation initiatio 74.2 2.9 6.2E-05 30.2 2.3 34 64-97 102-135 (138)
88 TIGR00630 uvra excinuclease AB 74.0 1.5 3.2E-05 39.7 1.0 24 53-76 736-771 (924)
89 KOG0712 Molecular chaperone (D 73.2 2.3 5E-05 35.2 1.8 39 54-97 144-198 (337)
90 TIGR00595 priA primosomal prot 70.5 3.6 7.7E-05 34.2 2.4 26 61-94 237-262 (505)
91 KOG1829 Uncharacterized conser 70.1 1.6 3.4E-05 38.4 0.3 38 54-94 502-540 (580)
92 PF01873 eIF-5_eIF-2B: Domain 69.7 1.7 3.7E-05 30.8 0.3 31 64-94 93-123 (125)
93 smart00653 eIF2B_5 domain pres 69.5 3.9 8.5E-05 28.5 2.1 31 63-93 79-109 (110)
94 PRK11788 tetratricopeptide rep 69.0 3.7 8E-05 29.8 1.9 28 63-98 354-381 (389)
95 PRK00635 excinuclease ABC subu 68.7 2.3 5.1E-05 41.5 1.1 24 53-76 1607-1642(1809)
96 PRK00349 uvrA excinuclease ABC 68.4 3.5 7.6E-05 37.5 2.0 15 52-66 737-751 (943)
97 PF10058 DUF2296: Predicted in 67.2 4.1 8.8E-05 25.4 1.6 29 65-93 23-52 (54)
98 PF03811 Zn_Tnp_IS1: InsA N-te 67.0 4.9 0.00011 23.5 1.8 28 65-92 6-36 (36)
99 cd00065 FYVE FYVE domain; Zinc 64.4 2.8 6.1E-05 24.1 0.5 34 59-92 21-55 (57)
100 COG1107 Archaea-specific RecJ- 61.3 5.6 0.00012 36.3 2.0 14 84-97 67-80 (715)
101 COG1107 Archaea-specific RecJ- 61.2 4.8 0.00011 36.7 1.5 47 49-95 49-105 (715)
102 TIGR00244 transcriptional regu 58.4 5.8 0.00012 29.7 1.3 29 65-93 1-36 (147)
103 PF14599 zinc_ribbon_6: Zinc-r 58.2 6.5 0.00014 25.3 1.4 29 62-93 28-56 (61)
104 PRK11823 DNA repair protein Ra 57.7 6.6 0.00014 32.1 1.7 16 81-96 17-32 (446)
105 PF08271 TF_Zn_Ribbon: TFIIB z 57.2 5.7 0.00012 22.7 0.9 24 66-91 2-25 (43)
106 PF08394 Arc_trans_TRASH: Arch 57.0 4.5 9.7E-05 24.2 0.4 27 67-93 1-31 (37)
107 COG1327 Predicted transcriptio 56.4 4.8 0.00011 30.7 0.6 29 65-93 1-36 (156)
108 PF07295 DUF1451: Protein of u 56.1 10 0.00023 27.6 2.3 34 60-96 108-141 (146)
109 TIGR00416 sms DNA repair prote 55.7 7.6 0.00016 32.0 1.7 16 81-96 17-32 (454)
110 PRK00564 hypA hydrogenase nick 54.3 8.5 0.00018 26.5 1.5 7 54-60 72-78 (117)
111 PF13790 DUF4182: Domain of un 53.6 11 0.00024 22.9 1.8 30 63-92 2-32 (38)
112 PF01807 zf-CHC2: CHC2 zinc fi 53.6 5.7 0.00012 26.2 0.6 35 63-97 32-66 (97)
113 PF07092 DUF1356: Protein of u 52.4 6.1 0.00013 31.4 0.6 15 54-68 28-42 (238)
114 PRK14873 primosome assembly pr 50.5 12 0.00027 32.6 2.3 32 54-94 393-431 (665)
115 PRK06386 replication factor A; 48.9 8.1 0.00018 31.9 0.9 17 77-93 227-244 (358)
116 PRK05580 primosome assembly pr 47.3 16 0.00034 31.5 2.4 25 62-94 406-430 (679)
117 smart00834 CxxC_CXXC_SSSS Puta 46.3 20 0.00044 19.3 2.0 28 66-93 7-34 (41)
118 PRK04023 DNA polymerase II lar 46.3 12 0.00027 35.7 1.7 33 54-94 627-660 (1121)
119 PRK07218 replication factor A; 45.7 9.2 0.0002 32.0 0.7 13 81-93 293-305 (423)
120 PF03470 zf-XS: XS zinc finger 45.4 9.2 0.0002 23.7 0.5 9 67-75 1-9 (43)
121 PF02150 RNA_POL_M_15KD: RNA p 45.4 15 0.00033 20.9 1.4 26 66-93 3-28 (35)
122 COG5175 MOT2 Transcriptional r 44.4 3.1 6.7E-05 36.3 -2.3 25 63-93 37-61 (480)
123 PF09779 Ima1_N: Ima1 N-termin 44.0 15 0.00032 25.8 1.4 30 65-95 1-30 (131)
124 COG1571 Predicted DNA-binding 43.3 11 0.00023 32.3 0.8 23 66-92 352-374 (421)
125 PF09297 zf-NADH-PPase: NADH p 41.4 12 0.00027 20.3 0.6 25 67-94 6-30 (32)
126 PRK03824 hypA hydrogenase nick 41.3 20 0.00044 25.2 1.8 13 83-95 105-117 (135)
127 PF13719 zinc_ribbon_5: zinc-r 40.9 20 0.00044 20.3 1.5 28 66-94 4-34 (37)
128 TIGR00627 tfb4 transcription f 40.5 23 0.00051 28.1 2.2 47 30-94 232-278 (279)
129 PRK00807 50S ribosomal protein 39.5 11 0.00023 23.3 0.2 26 65-92 2-35 (52)
130 PF07484 Collar: Phage Tail Co 39.0 16 0.00035 22.7 0.9 13 62-77 13-25 (57)
131 TIGR02098 MJ0042_CXXC MJ0042 f 38.3 29 0.00062 18.9 1.8 29 65-94 3-34 (38)
132 KOG1100 Predicted E3 ubiquitin 37.1 15 0.00032 27.9 0.7 21 54-75 180-200 (207)
133 PF03850 Tfb4: Transcription f 36.6 22 0.00048 27.9 1.6 45 32-92 232-276 (276)
134 PRK03681 hypA hydrogenase nick 36.4 28 0.0006 23.9 1.8 11 85-95 87-97 (114)
135 PRK11032 hypothetical protein; 36.3 27 0.00059 26.1 1.9 34 60-96 120-153 (160)
136 PRK14714 DNA polymerase II lar 36.1 22 0.00047 34.7 1.7 32 54-93 668-700 (1337)
137 PRK00241 nudC NADH pyrophospha 35.9 24 0.00051 27.1 1.6 29 66-97 101-129 (256)
138 PF01753 zf-MYND: MYND finger; 35.6 19 0.0004 19.8 0.7 10 87-96 11-20 (37)
139 PF04502 DUF572: Family of unk 35.3 28 0.0006 27.6 1.9 37 52-94 39-86 (324)
140 PF01927 Mut7-C: Mut7-C RNAse 35.2 22 0.00048 24.7 1.2 9 85-93 124-132 (147)
141 smart00249 PHD PHD zinc finger 34.9 33 0.00071 17.7 1.6 10 62-71 12-21 (47)
142 PRK12380 hydrogenase nickel in 34.5 31 0.00068 23.6 1.9 8 87-94 88-95 (113)
143 TIGR00100 hypA hydrogenase nic 34.5 29 0.00063 23.7 1.7 11 85-95 86-96 (115)
144 smart00709 Zpr1 Duplicated dom 34.1 37 0.00081 24.8 2.3 27 55-81 2-46 (160)
145 PF14446 Prok-RING_1: Prokaryo 33.9 24 0.00052 22.6 1.1 7 87-93 23-29 (54)
146 COG1103 Archaea-specific pyrid 32.7 16 0.00035 31.3 0.3 19 60-78 40-59 (382)
147 PF14570 zf-RING_4: RING/Ubox 32.1 16 0.00034 22.8 0.1 39 45-93 7-45 (48)
148 PF11672 DUF3268: Protein of u 31.0 28 0.00061 24.4 1.2 29 65-93 3-39 (102)
149 PF13453 zf-TFIIB: Transcripti 30.9 39 0.00084 19.1 1.6 27 67-94 2-28 (41)
150 PF05715 zf-piccolo: Piccolo Z 30.5 16 0.00035 24.3 -0.1 27 66-93 4-30 (61)
151 COG1530 CafA Ribonucleases G a 30.3 21 0.00045 30.1 0.5 17 82-98 392-408 (487)
152 TIGR01391 dnaG DNA primase, ca 30.1 29 0.00063 28.1 1.3 34 64-97 34-67 (415)
153 PRK14890 putative Zn-ribbon RN 29.7 27 0.00059 22.9 0.9 20 54-73 26-45 (59)
154 KOG3002 Zn finger protein [Gen 29.2 22 0.00049 28.6 0.5 21 62-92 67-87 (299)
155 PF14311 DUF4379: Domain of un 29.1 38 0.00083 20.0 1.4 30 59-91 23-55 (55)
156 KOG0970 DNA polymerase alpha, 29.0 31 0.00067 33.9 1.4 32 61-92 1319-1352(1429)
157 COG1198 PriA Primosomal protei 28.8 43 0.00094 30.2 2.2 26 61-94 459-484 (730)
158 PF10080 DUF2318: Predicted me 28.8 36 0.00079 23.6 1.4 19 54-72 36-60 (102)
159 PRK05654 acetyl-CoA carboxylas 28.3 23 0.0005 28.2 0.4 27 64-92 27-53 (292)
160 PF03833 PolC_DP2: DNA polymer 27.8 20 0.00043 33.6 0.0 32 54-93 656-688 (900)
161 KOG2593 Transcription initiati 27.3 36 0.00079 29.5 1.5 23 51-73 126-162 (436)
162 KOG2824 Glutaredoxin-related p 27.2 32 0.00069 28.3 1.1 17 54-70 263-279 (281)
163 TIGR03829 YokU_near_AblA uncha 27.2 36 0.00078 23.6 1.2 9 67-75 2-10 (89)
164 TIGR00280 L37a ribosomal prote 26.9 37 0.00081 23.7 1.2 25 65-92 36-60 (91)
165 PF01363 FYVE: FYVE zinc finge 26.4 31 0.00068 20.6 0.7 32 62-93 31-65 (69)
166 KOG0715 Molecular chaperone (D 26.3 40 0.00086 26.5 1.4 42 55-97 166-215 (288)
167 PF13717 zinc_ribbon_4: zinc-r 25.9 52 0.0011 18.6 1.5 29 65-94 3-34 (36)
168 PTZ00255 60S ribosomal protein 25.8 41 0.00089 23.4 1.3 25 65-92 37-61 (90)
169 PRK09678 DNA-binding transcrip 25.6 43 0.00093 22.2 1.3 29 65-93 2-37 (72)
170 PRK11827 hypothetical protein; 25.6 47 0.001 21.4 1.4 11 64-74 8-18 (60)
171 COG4416 Com Mu-like prophage p 25.5 25 0.00054 23.5 0.1 30 65-96 5-35 (60)
172 TIGR00757 RNaseEG ribonuclease 25.3 39 0.00084 28.0 1.2 17 50-66 387-403 (414)
173 PF10571 UPF0547: Uncharacteri 25.2 33 0.00072 18.7 0.6 9 86-94 1-9 (26)
174 PRK00635 excinuclease ABC subu 25.1 37 0.0008 33.7 1.2 24 53-76 720-752 (1809)
175 PF12773 DZR: Double zinc ribb 24.9 39 0.00085 19.1 0.9 28 62-93 10-37 (50)
176 PRK06921 hypothetical protein; 24.8 44 0.00095 25.4 1.4 14 53-66 32-45 (266)
177 COG2956 Predicted N-acetylgluc 24.7 40 0.00086 29.1 1.2 15 83-97 366-380 (389)
178 PF07621 DUF1582: Protein of u 24.7 41 0.0009 19.5 0.9 21 19-44 1-21 (29)
179 PRK12366 replication factor A; 23.9 34 0.00074 29.6 0.7 18 75-93 523-540 (637)
180 PF03367 zf-ZPR1: ZPR1 zinc-fi 23.5 60 0.0013 23.6 1.8 27 55-81 3-47 (161)
181 smart00400 ZnF_CHCC zinc finge 23.4 40 0.00088 19.8 0.8 32 66-97 4-35 (55)
182 cd00021 BBOX B-Box-type zinc f 22.8 67 0.0014 16.7 1.5 8 54-61 13-20 (39)
183 KOG1729 FYVE finger containing 22.8 16 0.00034 29.5 -1.4 30 62-91 191-220 (288)
184 PF03966 Trm112p: Trm112p-like 22.6 47 0.001 20.4 1.0 15 58-72 47-61 (68)
185 PRK08402 replication factor A; 22.4 37 0.00081 27.8 0.6 11 82-92 209-219 (355)
186 KOG3464 60S ribosomal protein 21.5 43 0.00093 24.4 0.7 33 58-90 3-46 (106)
187 PF05142 DUF702: Domain of unk 21.1 34 0.00073 26.0 0.1 27 65-96 5-32 (154)
188 cd00162 RING RING-finger (Real 21.0 46 0.00099 16.7 0.6 9 85-93 35-43 (45)
189 TIGR02605 CxxC_CxxC_SSSS putat 21.0 93 0.002 17.8 2.0 7 87-93 28-34 (52)
190 PRK00762 hypA hydrogenase nick 20.7 68 0.0015 22.2 1.6 9 86-94 93-101 (124)
191 PF03589 Antiterm: Antitermina 20.7 35 0.00077 23.1 0.1 14 83-96 30-43 (95)
192 smart00064 FYVE Protein presen 20.6 34 0.00075 20.3 0.1 30 63-92 33-63 (68)
193 PRK00349 uvrA excinuclease ABC 20.5 40 0.00087 30.9 0.5 10 55-64 278-287 (943)
194 COG4888 Uncharacterized Zn rib 20.4 63 0.0014 23.4 1.4 28 66-93 24-54 (104)
195 COG4049 Uncharacterized protei 20.3 49 0.0011 22.3 0.8 19 76-94 8-26 (65)
196 PRK03976 rpl37ae 50S ribosomal 20.2 58 0.0013 22.6 1.1 24 66-92 38-61 (90)
197 smart00661 RPOL9 RNA polymeras 20.0 73 0.0016 17.9 1.4 8 86-93 21-28 (52)
No 1
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.34 E-value=3.6e-07 Score=65.52 Aligned_cols=45 Identities=27% Similarity=0.664 Sum_probs=40.2
Q ss_pred ccccccCCCcceEEcccCCCcccceeccc--cceeccCCCccccccc
Q 034326 53 GIMCESCNGKGWLVCDFCGGQKTNVKAQN--NRIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GWllCdfCkG~KtNVKse~--~RiYRRCPtCkAvG~i 97 (98)
+..|+.|.|.+|+.|+.|.|.+..+.++. ....+|||.|-..|.|
T Consensus 99 ~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 99 GGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 45699999999999999999999998874 5678999999999976
No 2
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.29 E-value=0.00024 Score=44.20 Aligned_cols=43 Identities=30% Similarity=0.742 Sum_probs=24.3
Q ss_pred cccCCCcce------EEcccCCCcccceeccc-----cceeccCCCcccccccC
Q 034326 56 CESCNGKGW------LVCDFCGGQKTNVKAQN-----NRIYRRCPTCRAVSTPI 98 (98)
Q Consensus 56 Ce~CnG~GW------llCdfCkG~KtNVKse~-----~RiYRRCPtCkAvG~ii 98 (98)
|+.|+|.|. ..|+.|+|+-.-++... -.+...|+.|.+.|++|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 566666666 56777766655544431 25666777777777765
No 3
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.84 E-value=0.00075 Score=47.63 Aligned_cols=48 Identities=25% Similarity=0.532 Sum_probs=35.8
Q ss_pred hhhccccccCCCcceEEcccCCCcccceecc--ccceeccCCCccccccc
Q 034326 50 VEVGIMCESCNGKGWLVCDFCGGQKTNVKAQ--NNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 50 ~e~gi~Ce~CnG~GWllCdfCkG~KtNVKse--~~RiYRRCPtCkAvG~i 97 (98)
.+..+.|..|+|.|...|..|+|.-.-.+.. .-+++.+|++|++.|.+
T Consensus 38 ~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~ 87 (111)
T PLN03165 38 RENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL 87 (111)
T ss_pred hccCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee
Confidence 3455889999999999999999974433322 23568889999888854
No 4
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.55 E-value=0.0015 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.991 Sum_probs=11.9
Q ss_pred cccccCCCcceE------EcccCCCcc
Q 034326 54 IMCESCNGKGWL------VCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GWl------lCdfCkG~K 74 (98)
+.|..|+|.|.. .|.-|+|.-
T Consensus 143 ~~C~~C~G~G~~~~~~~~~C~~C~G~G 169 (371)
T PRK10767 143 VTCDTCHGSGAKPGTSPKTCPTCHGAG 169 (371)
T ss_pred ccCCCCCCcccCCCCCCccCCCCCCee
Confidence 556666666642 455555544
No 5
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.48 E-value=0.0018 Score=51.25 Aligned_cols=24 Identities=33% Similarity=0.949 Sum_probs=12.7
Q ss_pred cccccCCCcc------eEEcccCCCcccce
Q 034326 54 IMCESCNGKG------WLVCDFCGGQKTNV 77 (98)
Q Consensus 54 i~Ce~CnG~G------WllCdfCkG~KtNV 77 (98)
+.|..|+|.| --.|+.|+|+-..+
T Consensus 146 ~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~ 175 (372)
T PRK14300 146 VKCDTCHGSGSEKGETVTTCDACSGVGATR 175 (372)
T ss_pred cccCCCCCcccCCCCCCccCCCccCeEEEE
Confidence 4566666655 23455555554443
No 6
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.42 E-value=0.0021 Score=49.91 Aligned_cols=11 Identities=45% Similarity=1.057 Sum_probs=6.8
Q ss_pred cccccCCCcce
Q 034326 54 IMCESCNGKGW 64 (98)
Q Consensus 54 i~Ce~CnG~GW 64 (98)
+.|..|+|.|+
T Consensus 144 ~~C~~C~G~G~ 154 (354)
T TIGR02349 144 ESCETCHGTGA 154 (354)
T ss_pred CcCCCCCCCCC
Confidence 55666666664
No 7
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.40 E-value=0.0021 Score=51.12 Aligned_cols=21 Identities=33% Similarity=0.942 Sum_probs=11.7
Q ss_pred cccccCCCcce------EEcccCCCcc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~K 74 (98)
+.|..|+|.|+ ..|.-|+|+-
T Consensus 156 ~~C~~C~G~G~~~~~~~~~C~~C~G~G 182 (386)
T PRK14277 156 EKCDVCKGSGAKPGSKPVTCPVCHGTG 182 (386)
T ss_pred ccCCCCCCCCcCCCCCCccCCCCCCEE
Confidence 55666666664 2355555543
No 8
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.37 E-value=0.0023 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.830 Sum_probs=14.2
Q ss_pred cccccCCCcce------EEcccCCCccc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQKT 75 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~Kt 75 (98)
+.|..|+|.|+ ..|.-|+|+-.
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 180 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGR 180 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCE
Confidence 56777777775 35666666643
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.37 E-value=0.0021 Score=51.37 Aligned_cols=21 Identities=38% Similarity=0.945 Sum_probs=12.7
Q ss_pred cccccCCCcce------EEcccCCCcc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~K 74 (98)
+.|..|+|.|. ..|.-|.|+-
T Consensus 174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G 200 (392)
T PRK14279 174 APCTTCHGSGARPGTSPKVCPTCNGSG 200 (392)
T ss_pred ccCCCCccccccCCCCCCCCCCCcceE
Confidence 56777777775 3455555543
No 10
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.34 E-value=0.0026 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.901 Sum_probs=14.3
Q ss_pred ccccccCCCcce------EEcccCCCcc
Q 034326 53 GIMCESCNGKGW------LVCDFCGGQK 74 (98)
Q Consensus 53 gi~Ce~CnG~GW------llCdfCkG~K 74 (98)
.+.|..|+|.|. ..|.-|.|+-
T Consensus 141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G 168 (377)
T PRK14298 141 AERCSTCSGTGAKPGTSPKRCPTCGGTG 168 (377)
T ss_pred eccCCCCCCCcccCCCCCCcCCCCCCcc
Confidence 366777777775 4566666654
No 11
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.29 E-value=0.0034 Score=39.00 Aligned_cols=36 Identities=36% Similarity=0.848 Sum_probs=23.0
Q ss_pred ccccccCCCcceE---------------EcccCCCcccceeccccce-eccCCCccccc
Q 034326 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRI-YRRCPTCRAVS 95 (98)
Q Consensus 53 gi~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~Ri-YRRCPtCkAvG 95 (98)
-..|..|+|.|++ .|+-|+|.-. .| ..+|++|++.|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~-------~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGK-------IIEKDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSE-------E-TSSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceee-------EECCCCCCCCCCcC
Confidence 3568888888876 4888888733 34 57899988765
No 12
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.29 E-value=0.0022 Score=51.23 Aligned_cols=45 Identities=24% Similarity=0.637 Sum_probs=28.9
Q ss_pred ccccccCCCcce------EEcccCCCcccceecccc-ceeccCCCccccccc
Q 034326 53 GIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GW------llCdfCkG~KtNVKse~~-RiYRRCPtCkAvG~i 97 (98)
.+.|+.|+|.|. ..|.-|.|...-+..... .+..+|+.|.+.|++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 217 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLI 217 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEE
Confidence 367888888884 567777777655444432 345566666666654
No 13
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.25 E-value=0.0029 Score=50.10 Aligned_cols=11 Identities=55% Similarity=1.226 Sum_probs=6.5
Q ss_pred cccccCCCcce
Q 034326 54 IMCESCNGKGW 64 (98)
Q Consensus 54 i~Ce~CnG~GW 64 (98)
+.|+.|+|.|.
T Consensus 141 ~~C~~C~G~G~ 151 (369)
T PRK14288 141 SVCESCDGTGA 151 (369)
T ss_pred ccCCCCCCccc
Confidence 45666666654
No 14
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.21 E-value=0.0032 Score=49.81 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=8.5
Q ss_pred eeccCCCccccccc
Q 034326 84 IYRRCPTCRAVSTP 97 (98)
Q Consensus 84 iYRRCPtCkAvG~i 97 (98)
+-.+|+.|.+.|++
T Consensus 210 ~~~~C~~C~G~g~v 223 (386)
T PRK14289 210 IKKKCKKCGGEGIV 223 (386)
T ss_pred cCcCCCCCCCCcEE
Confidence 34567777666654
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.19 E-value=0.0033 Score=49.75 Aligned_cols=44 Identities=30% Similarity=0.746 Sum_probs=24.8
Q ss_pred cccccCCCcce------EEcccCCCcccceecccc-ceeccCCCccccccc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~KtNVKse~~-RiYRRCPtCkAvG~i 97 (98)
+.|+.|+|.|. ..|.-|.|.-.-+...+- .+...|+.|.+.|++
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~ 197 (365)
T PRK14285 147 MLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKI 197 (365)
T ss_pred ccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccc
Confidence 67888888774 467777776543322211 344555555555544
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.16 E-value=0.0036 Score=49.59 Aligned_cols=21 Identities=38% Similarity=1.073 Sum_probs=13.8
Q ss_pred cccccCCCcce------EEcccCCCcc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~K 74 (98)
+.|..|+|.|. ..|..|.|+-
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G 170 (376)
T PRK14280 144 ETCDTCHGSGAKPGTSKETCSHCGGSG 170 (376)
T ss_pred ccCCCCCCcccCCCCCCccCCCCCCEE
Confidence 66777777773 4566666653
No 17
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.07 E-value=0.0043 Score=49.02 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=7.7
Q ss_pred eeccCCCccccccc
Q 034326 84 IYRRCPTCRAVSTP 97 (98)
Q Consensus 84 iYRRCPtCkAvG~i 97 (98)
+..+|..|.+.|++
T Consensus 199 ~~~~C~~C~G~g~v 212 (374)
T PRK14293 199 IEDPCDACGGQGVK 212 (374)
T ss_pred eccCCCCCCCCccc
Confidence 34456666665554
No 18
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.07 E-value=0.0041 Score=49.42 Aligned_cols=21 Identities=48% Similarity=1.369 Sum_probs=12.5
Q ss_pred cccccCCCcce------EEcccCCCcc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~K 74 (98)
+.|..|+|.|. ..|.-|.|.-
T Consensus 140 ~~C~~C~G~G~~~~~~~~~C~~C~G~G 166 (378)
T PRK14278 140 VLCDRCHGKGTAGDSKPVTCDTCGGRG 166 (378)
T ss_pred ccCCCCcCccCCCCCCceecCCccCce
Confidence 56777777664 3455555543
No 19
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0042 Score=48.79 Aligned_cols=37 Identities=27% Similarity=0.694 Sum_probs=30.9
Q ss_pred cccccCCCcceEE-----------cccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWLV-----------CDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWll-----------CdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+. |+.|+|... .+-.+|+.|.+.|++
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 207 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGK-------IIKDPCKKCHGQGRV 207 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCcee-------ECCCCCCCCCCCceE
Confidence 5799999999875 999999854 345779999999975
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0042 Score=48.94 Aligned_cols=45 Identities=33% Similarity=0.739 Sum_probs=24.2
Q ss_pred ccccccCCCcceE------EcccCCCcccceecccc-ceeccCCCccccccc
Q 034326 53 GIMCESCNGKGWL------VCDFCGGQKTNVKAQNN-RIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GWl------lCdfCkG~KtNVKse~~-RiYRRCPtCkAvG~i 97 (98)
.+.|..|+|.|.. .|.-|.|+-.-++..+. .+...|+.|.+.|++
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~ 195 (366)
T PRK14294 144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKV 195 (366)
T ss_pred cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCee
Confidence 3567777777752 56666665543333221 244555555555544
No 21
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.00 E-value=0.0047 Score=49.37 Aligned_cols=21 Identities=38% Similarity=0.959 Sum_probs=11.7
Q ss_pred cccccCCCcce-----EEcccCCCcc
Q 034326 54 IMCESCNGKGW-----LVCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GW-----llCdfCkG~K 74 (98)
+.|..|+|.|. ..|.-|+|.-
T Consensus 164 ~~C~~C~G~G~~~~~~~~C~~C~G~G 189 (397)
T PRK14281 164 VPCKECNGTGSKTGATETCPTCHGSG 189 (397)
T ss_pred ecCCCCCCcccCCCCCccCCCCCCCc
Confidence 55666666663 3455555543
No 22
>PRK14286 chaperone protein DnaJ; Provisional
Probab=95.97 E-value=0.0046 Score=49.08 Aligned_cols=43 Identities=37% Similarity=0.760 Sum_probs=21.6
Q ss_pred cccccCCCcce------EEcccCCCcccceecccc-ceeccCCCcccccc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVST 96 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~KtNVKse~~-RiYRRCPtCkAvG~ 96 (98)
+.|..|+|.|. ..|.-|+|+-.-+...+. .+...|+.|.+.|.
T Consensus 151 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 200 (372)
T PRK14286 151 ESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGT 200 (372)
T ss_pred ccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceee
Confidence 56777777774 456666665433322221 23334444444443
No 23
>PRK14285 chaperone protein DnaJ; Provisional
Probab=95.96 E-value=0.0049 Score=48.77 Aligned_cols=37 Identities=30% Similarity=0.774 Sum_probs=30.6
Q ss_pred cccccCCCcceE-----------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl-----------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|.|.-. .+-..|++|++.|++
T Consensus 164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 211 (365)
T PRK14285 164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGK-------IISNPCKSCKGKGSL 211 (365)
T ss_pred ccCCCccCceeEEecCceeEEeeecCCCCCccc-------ccCCCCCCCCCCCEE
Confidence 569999999965 6999999854 345679999999975
No 24
>PRK14276 chaperone protein DnaJ; Provisional
Probab=95.94 E-value=0.0052 Score=48.75 Aligned_cols=21 Identities=38% Similarity=0.997 Sum_probs=14.7
Q ss_pred cccccCCCcce------EEcccCCCcc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~K 74 (98)
+.|..|+|.|. ..|.-|.|+-
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G 173 (380)
T PRK14276 147 ATCHTCNGSGAKPGTSPVTCGKCHGSG 173 (380)
T ss_pred ccCCCCcCcccCCCCCCccCCCCCCee
Confidence 67888888775 4577777654
No 25
>PRK14286 chaperone protein DnaJ; Provisional
Probab=95.92 E-value=0.0047 Score=49.02 Aligned_cols=37 Identities=32% Similarity=0.768 Sum_probs=30.5
Q ss_pred cccccCCCcceE-----------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl-----------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|.|.-.- +..+|+.|++.|++
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~-------~~~~C~~C~G~g~~ 215 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTV-------ISNPCKTCGGQGLQ 215 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeE-------ecccCCCCCCCcEE
Confidence 569999999965 59999998544 34579999999975
No 26
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0064 Score=49.38 Aligned_cols=45 Identities=29% Similarity=0.608 Sum_probs=35.8
Q ss_pred ccccccCCCcceEEcccCCCccccee-ccccceeccCCCccccccc
Q 034326 53 GIMCESCNGKGWLVCDFCGGQKTNVK-AQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GWllCdfCkG~KtNVK-se~~RiYRRCPtCkAvG~i 97 (98)
+-.|+.|.|.+|+.|.-|.|-+-=+. +++.--..||+.|---|.|
T Consensus 229 ~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 229 GGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred CCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence 36799999999999999999876665 2344556789999887765
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.88 E-value=0.0056 Score=48.42 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=27.8
Q ss_pred ccccccCCCcce------EEcccCCCcccceecccc-----ceeccCCCccccccc
Q 034326 53 GIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-----RIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GW------llCdfCkG~KtNVKse~~-----RiYRRCPtCkAvG~i 97 (98)
.+.|..|+|.|. -.|.-|.|....++-.+. .....|++|.+.|++
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 201 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI 201 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee
Confidence 367888888764 467778777665544321 234566666666654
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=95.84 E-value=0.0067 Score=48.32 Aligned_cols=21 Identities=43% Similarity=1.020 Sum_probs=12.2
Q ss_pred cccccCCCcce------EEcccCCCcc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~K 74 (98)
+.|..|+|.|. -.|.-|.|+-
T Consensus 159 ~~C~~C~G~G~~~~~~~~~C~~C~G~G 185 (391)
T PRK14284 159 KSCDACSGSGANSSQGIKVCDRCKGSG 185 (391)
T ss_pred ccCCCCcccccCCCCCCeecCccCCee
Confidence 56777766664 3455555554
No 29
>PRK14284 chaperone protein DnaJ; Provisional
Probab=95.82 E-value=0.0061 Score=48.54 Aligned_cols=38 Identities=32% Similarity=0.749 Sum_probs=30.9
Q ss_pred ccccccCCCcce-----------EEcccCCCcccceeccccceeccCCCccccccc
Q 034326 53 GIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GW-----------llCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
-..|..|+|.|. ..|+.|.|.-. .+-..|++|++.|++
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 223 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGR-------VITDPCSVCRGQGRI 223 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCc-------ccCCcCCCCCCccee
Confidence 356999999998 46999999843 345679999999876
No 30
>PRK14296 chaperone protein DnaJ; Provisional
Probab=95.82 E-value=0.0056 Score=48.68 Aligned_cols=23 Identities=30% Similarity=0.757 Sum_probs=15.4
Q ss_pred cccccCCCcce------EEcccCCCcccc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQKTN 76 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~KtN 76 (98)
+.|..|+|.|. ..|.-|.|+-.-
T Consensus 150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 178 (372)
T PRK14296 150 TNCSKCFGSGAESNSDIHICNNCHGTGEV 178 (372)
T ss_pred eccCCCCCCccCCCCCCccCCCCCCCceE
Confidence 56888888774 457777766533
No 31
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.81 E-value=0.0061 Score=48.02 Aligned_cols=37 Identities=30% Similarity=0.716 Sum_probs=30.7
Q ss_pred cccccCCCcceE-----------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl-----------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|+|...- +...|+.|.+.|++
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~-------~~~~C~~C~G~g~v 209 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKV-------IVSPCKTCHGQGRV 209 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCee-------cCcCCCCCCCceEe
Confidence 579999999965 59999998653 44679999999986
No 32
>PRK14301 chaperone protein DnaJ; Provisional
Probab=95.78 E-value=0.0062 Score=48.34 Aligned_cols=43 Identities=33% Similarity=0.804 Sum_probs=21.1
Q ss_pred cccccCCCcce------EEcccCCCcccceecccc-ceeccCCCcccccc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVST 96 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~KtNVKse~~-RiYRRCPtCkAvG~ 96 (98)
+.|..|+|.|. ..|.-|+|+-.-++..+- .+...|+.|.+.|+
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 194 (373)
T PRK14301 145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGR 194 (373)
T ss_pred ccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceee
Confidence 56777777775 346666665433322211 22344444444443
No 33
>PRK14300 chaperone protein DnaJ; Provisional
Probab=95.77 E-value=0.006 Score=48.28 Aligned_cols=37 Identities=27% Similarity=0.705 Sum_probs=30.5
Q ss_pred cccccCCCcceEE-----------cccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWLV-----------CDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWll-----------CdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.++ |+.|.|.- ..+-.+|++|.+.|++
T Consensus 163 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G-------~~~~~~C~~C~G~g~v 210 (372)
T PRK14300 163 TTCDACSGVGATRMQQGFFTIEQACHKCQGNG-------QIIKNPCKKCHGMGRY 210 (372)
T ss_pred ccCCCccCeEEEEEeeceEEEEEeCCCCCccc-------eEeCCCCCCCCCceEE
Confidence 5699999999874 99999874 3356789999999986
No 34
>PRK14292 chaperone protein DnaJ; Provisional
Probab=95.74 E-value=0.0069 Score=47.56 Aligned_cols=24 Identities=29% Similarity=0.714 Sum_probs=14.5
Q ss_pred cccCCCcccceeccccceeccCCCccccccc
Q 034326 67 CDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 67 CdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
|+.|.|... .+-.+|+.|.+.|++
T Consensus 186 C~~C~G~G~-------~~~~~C~~C~G~g~v 209 (371)
T PRK14292 186 CPTCRGEGQ-------IITDPCTVCRGRGRT 209 (371)
T ss_pred cCCCcccce-------ecCCCCCCCCCceEE
Confidence 555555533 244667777777765
No 35
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.73 E-value=0.0069 Score=47.70 Aligned_cols=44 Identities=25% Similarity=0.599 Sum_probs=22.3
Q ss_pred cccccCCCcce-----EEcccCCCcccceecccc-----ceeccCCCccccccc
Q 034326 54 IMCESCNGKGW-----LVCDFCGGQKTNVKAQNN-----RIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GW-----llCdfCkG~KtNVKse~~-----RiYRRCPtCkAvG~i 97 (98)
+.|..|+|.|. ..|+-|+|+-.-+..... .+...|+.|.+.|++
T Consensus 150 ~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~ 203 (365)
T PRK14290 150 AMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI 203 (365)
T ss_pred ccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE
Confidence 56777777775 356666665432222210 123455555555544
No 36
>PRK14279 chaperone protein DnaJ; Provisional
Probab=95.71 E-value=0.006 Score=48.83 Aligned_cols=37 Identities=30% Similarity=0.786 Sum_probs=30.7
Q ss_pred cccccCCCcceE-----------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl-----------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|++ .|+.|.|+-. .|..+|++|++.|++
T Consensus 191 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-------~i~~~C~~C~G~g~v 238 (392)
T PRK14279 191 KVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGS-------IIEDPCEECKGTGVT 238 (392)
T ss_pred CCCCCCcceEEEEEEecceEEEEecCCCCceeE-------EeCCcCCCCCCCeEE
Confidence 569999999986 4999999854 345679999999876
No 37
>PRK14301 chaperone protein DnaJ; Provisional
Probab=95.64 E-value=0.0073 Score=47.94 Aligned_cols=37 Identities=30% Similarity=0.809 Sum_probs=30.4
Q ss_pred cccccCCCcceE-----------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl-----------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|+|...- +-..|+.|.+.|++
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~-------~~~~C~~C~G~g~v 209 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRV-------ITHPCPKCKGSGIV 209 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeee-------cCCCCCCCCCCcee
Confidence 569999999975 59999998543 34579999999986
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.58 E-value=0.0082 Score=47.31 Aligned_cols=39 Identities=33% Similarity=0.796 Sum_probs=31.7
Q ss_pred hccccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 52 ~gi~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
....|..|+|.|.. .|+.|+|... .+..+|+.|.+.|++
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 217 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGR-------IPEEKCPRCNGTGTV 217 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCcee-------EccCCCCCCCCceeE
Confidence 34679999999963 6999999853 356789999999986
No 39
>PRK14297 chaperone protein DnaJ; Provisional
Probab=95.54 E-value=0.0089 Score=47.32 Aligned_cols=44 Identities=30% Similarity=0.585 Sum_probs=24.7
Q ss_pred cccccCCCcce------EEcccCCCcccceecc-----ccceeccCCCccccccc
Q 034326 54 IMCESCNGKGW------LVCDFCGGQKTNVKAQ-----NNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG~KtNVKse-----~~RiYRRCPtCkAvG~i 97 (98)
+.|..|+|.|. ..|..|.|.-.-..-. --.+..+|+.|.+.|++
T Consensus 149 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 203 (380)
T PRK14297 149 ENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV 203 (380)
T ss_pred ccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE
Confidence 66888888774 5677777764221111 01245566666666654
No 40
>PRK14298 chaperone protein DnaJ; Provisional
Probab=95.52 E-value=0.0089 Score=47.63 Aligned_cols=37 Identities=30% Similarity=0.790 Sum_probs=30.3
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+-|.|.-. .+-.+|++|++.|++
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 210 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQ-------VIESPCPVCSGTGKV 210 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCc-------ccCCCCCCCCCccEE
Confidence 569999999965 5999999843 355679999999975
No 41
>PRK14295 chaperone protein DnaJ; Provisional
Probab=95.49 E-value=0.009 Score=47.78 Aligned_cols=37 Identities=24% Similarity=0.661 Sum_probs=30.6
Q ss_pred cccccCCCcceE-----------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl-----------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|++ .|+.|+|... .+...|+.|++.|++
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~~ 231 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGL-------IADDPCLVCKGSGRA 231 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCcceeE-------EeccCCCCCCCCceE
Confidence 569999999984 6999999853 355679999999876
No 42
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.45 E-value=0.0089 Score=47.32 Aligned_cols=37 Identities=24% Similarity=0.711 Sum_probs=30.5
Q ss_pred cccccCCCcceEE---------------cccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWLV---------------CDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWll---------------CdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|++. |+-|+|+- ..+-..|..|.+.|++
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G-------~~~~~~C~~C~G~g~v 215 (378)
T PRK14283 164 KTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEG-------KIVEKPCSNCHGKGVV 215 (378)
T ss_pred ccCCCcCCccEEEEEEeccCceEEEEEECCCCCccc-------eecCCCCCCCCCceee
Confidence 5699999999974 99999984 3345779999999875
No 43
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.39 E-value=0.01 Score=47.13 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=7.1
Q ss_pred ccCCCccccccc
Q 034326 86 RRCPTCRAVSTP 97 (98)
Q Consensus 86 RRCPtCkAvG~i 97 (98)
..|+.|++.|++
T Consensus 209 ~~C~~C~G~g~v 220 (382)
T PRK14291 209 EPCSKCNGRGLV 220 (382)
T ss_pred cCCCCCCCCceE
Confidence 456666666654
No 44
>PRK14287 chaperone protein DnaJ; Provisional
Probab=95.23 E-value=0.013 Score=46.49 Aligned_cols=44 Identities=30% Similarity=0.582 Sum_probs=25.0
Q ss_pred cccccCCCcc------eEEcccCCCcccceeccc-----cceeccCCCccccccc
Q 034326 54 IMCESCNGKG------WLVCDFCGGQKTNVKAQN-----NRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~G------WllCdfCkG~KtNVKse~-----~RiYRRCPtCkAvG~i 97 (98)
+.|..|+|.| ...|.-|.|.-.-+.... -.....|+.|.+.|++
T Consensus 139 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 193 (371)
T PRK14287 139 ETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI 193 (371)
T ss_pred ccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc
Confidence 6688888777 356777777643222221 0234566666666654
No 45
>PRK14296 chaperone protein DnaJ; Provisional
Probab=95.16 E-value=0.013 Score=46.61 Aligned_cols=37 Identities=27% Similarity=0.814 Sum_probs=30.4
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+-|.|...- +...|++|++.|++
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~-------~~~~C~~C~G~g~v 218 (372)
T PRK14296 167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKI-------IKNKCKNCKGKGKY 218 (372)
T ss_pred ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCccee-------ecccccCCCCceEE
Confidence 569999999975 59999998544 45679999999875
No 46
>PRK14288 chaperone protein DnaJ; Provisional
Probab=95.15 E-value=0.013 Score=46.42 Aligned_cols=37 Identities=30% Similarity=0.771 Sum_probs=30.2
Q ss_pred cccccCCCcceEE-----------cccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWLV-----------CDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWll-----------CdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+. |+.|.|+..- +...|+.|.+.|++
T Consensus 157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------~~~~C~~C~G~g~v 204 (369)
T PRK14288 157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI-------IKTPCQACKGKTYI 204 (369)
T ss_pred cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceE-------ccccCccCCCcceE
Confidence 5699999999764 9999998532 45669999999876
No 47
>PRK14287 chaperone protein DnaJ; Provisional
Probab=95.13 E-value=0.014 Score=46.35 Aligned_cols=37 Identities=35% Similarity=0.827 Sum_probs=30.1
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|.|+-.- +-..|+.|.+.|+|
T Consensus 156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------~~~~C~~C~G~g~v 207 (371)
T PRK14287 156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI-------IKQKCATCGGKGKV 207 (371)
T ss_pred cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc-------ccccCCCCCCeeEE
Confidence 569999999964 59999998543 45679999998875
No 48
>PRK14282 chaperone protein DnaJ; Provisional
Probab=95.11 E-value=0.014 Score=46.11 Aligned_cols=37 Identities=27% Similarity=0.748 Sum_probs=30.3
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|++ .|+.|.|... .+...|++|.+.|++
T Consensus 170 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 221 (369)
T PRK14282 170 VTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGK-------IPGEYCHECGGSGRI 221 (369)
T ss_pred cCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcce-------eCCCCCCCCCCceeE
Confidence 569999999986 4999999853 345679999999875
No 49
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.04 E-value=0.014 Score=46.33 Aligned_cols=45 Identities=36% Similarity=0.785 Sum_probs=35.5
Q ss_pred ccccccCCCcce------EEcccCCCcccceeccc-cceeccCCCccccccc
Q 034326 53 GIMCESCNGKGW------LVCDFCGGQKTNVKAQN-NRIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GW------llCdfCkG~KtNVKse~-~RiYRRCPtCkAvG~i 97 (98)
.+.|..|+|.|+ ..|.-|+|.-.-++... -.+...|+.|.+.|++
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 207 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL 207 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence 478999999995 67999999876555433 2578899999999964
No 50
>PRK14280 chaperone protein DnaJ; Provisional
Probab=95.03 E-value=0.015 Score=46.14 Aligned_cols=37 Identities=32% Similarity=0.875 Sum_probs=30.4
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|+|.-. .+...|+.|.+.|++
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 212 (376)
T PRK14280 161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQ-------EIKEKCPTCHGKGKV 212 (376)
T ss_pred ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCc-------eecCCCCCCCCceEE
Confidence 569999999965 5999999854 345779999999975
No 51
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.016 Score=47.98 Aligned_cols=47 Identities=28% Similarity=0.658 Sum_probs=33.0
Q ss_pred hccccccCCCcce------EEcccCCCcccceecc--cc-ceeccCCCcccccccC
Q 034326 52 VGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NN-RIYRRCPTCRAVSTPI 98 (98)
Q Consensus 52 ~gi~Ce~CnG~GW------llCdfCkG~KtNVKse--~~-RiYRRCPtCkAvG~ii 98 (98)
..+.|+.|+|.|+ ..|.-|+|.-.=...+ .. .+.+.||+|...|.+|
T Consensus 141 ~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i 196 (371)
T COG0484 141 RSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII 196 (371)
T ss_pred eeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC
Confidence 3467999998854 6888998875444444 32 6677888888888765
No 52
>PRK14276 chaperone protein DnaJ; Provisional
Probab=95.02 E-value=0.016 Score=46.08 Aligned_cols=37 Identities=32% Similarity=0.899 Sum_probs=29.9
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|+|...- +..+|+.|++.|++
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------~~~~C~~C~G~g~~ 215 (380)
T PRK14276 164 VTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKE-------IKEPCQTCHGTGHE 215 (380)
T ss_pred ccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcc-------ccCCCCCCCCceEE
Confidence 569999999865 59999998433 45679999999875
No 53
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=94.85 E-value=0.018 Score=44.76 Aligned_cols=38 Identities=32% Similarity=0.801 Sum_probs=30.0
Q ss_pred ccccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
...|..|+|.|++ .|+.|+|+-. .+...|+.|.+.|++
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGK-------IIKEPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcce-------ecCCCCCCCCCCcEe
Confidence 3569999999974 4999999853 234579999999975
No 54
>PRK14297 chaperone protein DnaJ; Provisional
Probab=94.84 E-value=0.017 Score=45.74 Aligned_cols=37 Identities=32% Similarity=0.828 Sum_probs=30.0
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|+|+..= +...|++|...|++
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------~~~~C~~C~G~g~v 217 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV-------IEDPCNKCHGKGKV 217 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE-------cCCCCCCCCCCeEE
Confidence 569999999976 59999998542 34679999999875
No 55
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=94.68 E-value=0.024 Score=46.42 Aligned_cols=21 Identities=38% Similarity=1.096 Sum_probs=12.1
Q ss_pred cccccCCCcceE-----EcccCCCcc
Q 034326 54 IMCESCNGKGWL-----VCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GWl-----lCdfCkG~K 74 (98)
+.|..|+|.|.. .|.-|+|+-
T Consensus 151 ~~C~~C~G~G~~~~~~~~C~~C~G~G 176 (421)
T PTZ00037 151 VICANCEGHGGPKDAFVDCKLCNGQG 176 (421)
T ss_pred ccccccCCCCCCCCCCccCCCCCCCC
Confidence 556666666642 455565554
No 56
>PRK14277 chaperone protein DnaJ; Provisional
Probab=94.36 E-value=0.027 Score=44.81 Aligned_cols=37 Identities=30% Similarity=0.769 Sum_probs=30.5
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|++ .|+.|+|+..- +..+|+.|.+.|++
T Consensus 173 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------~~~~C~~C~G~g~v 224 (386)
T PRK14277 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKI-------ITDPCNKCGGTGRI 224 (386)
T ss_pred ccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceee-------ccCCCCCCCCCcEE
Confidence 569999999986 49999998543 44679999999976
No 57
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=94.32 E-value=0.026 Score=46.27 Aligned_cols=40 Identities=28% Similarity=0.726 Sum_probs=30.6
Q ss_pred ccccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
-..|..|+|.|.. .|+.|+|.-.-++. ...|++|++.|++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-----~~~C~~C~G~g~v 220 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-----SKKCKNCSGKGVK 220 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc-----cccCCcCCCccee
Confidence 3569999999962 69999998543321 2469999999986
No 58
>PRK14281 chaperone protein DnaJ; Provisional
Probab=94.23 E-value=0.029 Score=44.94 Aligned_cols=38 Identities=32% Similarity=0.842 Sum_probs=30.7
Q ss_pred ccccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 53 gi~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
-..|..|+|.|.+ .|+.|.|... .+..+|+.|++.|++
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 231 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGR-------VVKDRCPACYGEGIK 231 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceee-------eeCCCCCCCCCCccE
Confidence 3569999999964 4999999853 345679999999986
No 59
>PRK14278 chaperone protein DnaJ; Provisional
Probab=94.04 E-value=0.038 Score=44.00 Aligned_cols=37 Identities=27% Similarity=0.717 Sum_probs=30.0
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|.|.-. .+-..|+.|++.|++
T Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~-------~~~~~C~~C~G~g~v 208 (378)
T PRK14278 157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGE-------VIPDPCHECAGDGRV 208 (378)
T ss_pred eecCCccCceEEEEEEeccceeEEEEEECCCCCccce-------eeCCCCCCCCCceeE
Confidence 469999999964 5999999853 345679999999975
No 60
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=93.94 E-value=0.042 Score=35.81 Aligned_cols=33 Identities=30% Similarity=0.910 Sum_probs=25.1
Q ss_pred cceEEcccCCCcccceecccc----ceeccCCCccccc
Q 034326 62 KGWLVCDFCGGQKTNVKAQNN----RIYRRCPTCRAVS 95 (98)
Q Consensus 62 ~GWllCdfCkG~KtNVKse~~----RiYRRCPtCkAvG 95 (98)
.+|++|+.|++ ||.+|.+.. .+---||-||-.-
T Consensus 2 ~~Wi~CP~Cgn-KTR~kir~DT~LkNfPlyCpKCK~Et 38 (55)
T PF14205_consen 2 SEWILCPICGN-KTRLKIREDTVLKNFPLYCPKCKQET 38 (55)
T ss_pred CeEEECCCCCC-ccceeeecCceeccccccCCCCCceE
Confidence 47999999976 577787753 4566799999653
No 61
>PRK14289 chaperone protein DnaJ; Provisional
Probab=93.82 E-value=0.041 Score=43.61 Aligned_cols=46 Identities=30% Similarity=0.664 Sum_probs=36.1
Q ss_pred ccccccCCCcce------EEcccCCCcccceeccc-----cceeccCCCcccccccC
Q 034326 53 GIMCESCNGKGW------LVCDFCGGQKTNVKAQN-----NRIYRRCPTCRAVSTPI 98 (98)
Q Consensus 53 gi~Ce~CnG~GW------llCdfCkG~KtNVKse~-----~RiYRRCPtCkAvG~ii 98 (98)
.+.|..|.|.|- ..|..|+|.-.-++... -.+...|+.|.+.|+++
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 210 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII 210 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc
Confidence 478999999995 57999999865555442 24688999999999875
No 62
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.04 Score=45.70 Aligned_cols=37 Identities=30% Similarity=0.740 Sum_probs=27.0
Q ss_pred cccccCCCcc-------------eEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKG-------------WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~G-------------WllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.| +..|+-|.|. +.-|...|++|++.|++
T Consensus 160 ~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~-------G~~i~~pC~~C~G~G~v 209 (371)
T COG0484 160 KTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGT-------GKIIKDPCGKCKGKGRV 209 (371)
T ss_pred CcCCCCCCcCeEEEEEeeeEEEEEEECCCCccc-------eeECCCCCCCCCCCCeE
Confidence 5688888888 3468888886 33456788888888875
No 63
>PRK14293 chaperone protein DnaJ; Provisional
Probab=93.46 E-value=0.061 Score=42.57 Aligned_cols=46 Identities=33% Similarity=0.681 Sum_probs=33.8
Q ss_pred ccccccCCCcce------EEcccCCCcccceecc----c-cceeccCCCcccccccC
Q 034326 53 GIMCESCNGKGW------LVCDFCGGQKTNVKAQ----N-NRIYRRCPTCRAVSTPI 98 (98)
Q Consensus 53 gi~Ce~CnG~GW------llCdfCkG~KtNVKse----~-~RiYRRCPtCkAvG~ii 98 (98)
.+.|..|+|.|- -.|..|.|...=++.. + -....+|++|.+.|++|
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (374)
T PRK14293 143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI 199 (374)
T ss_pred cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe
Confidence 478999999885 5699999987433222 1 12357999999999875
No 64
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=93.37 E-value=0.029 Score=41.46 Aligned_cols=39 Identities=31% Similarity=0.832 Sum_probs=28.4
Q ss_pred cccccCCCcceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 54 IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 54 i~Ce~CnG~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
..|+-|.++|. +|.+|... .-+=+=....-.||+.|+++
T Consensus 143 ~~C~lC~~kGf-iCe~C~~~-~~IfPF~~~~~~~C~~C~~v 181 (202)
T PF13901_consen 143 YSCELCQQKGF-ICEICNSD-DIIFPFQIDTTVRCPKCKSV 181 (202)
T ss_pred HHhHHHHhCCC-CCccCCCC-CCCCCCCCCCeeeCCcCccc
Confidence 35999999996 89999776 33333333456789999986
No 65
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.14 Score=42.06 Aligned_cols=22 Identities=23% Similarity=0.019 Sum_probs=11.3
Q ss_pred cceeeecCCCCCCCCCCCCCcc
Q 034326 15 VKLFSIMPSSSSSSRSRPSHSL 36 (98)
Q Consensus 15 ~~~l~~lPS~ssss~srpsh~~ 36 (98)
.+++..-+-.+|..++++.++-
T Consensus 120 ~kl~l~~~~iCs~C~GsGgksg 141 (337)
T KOG0712|consen 120 KKLFLSRNFICSKCSGSGGKSG 141 (337)
T ss_pred cceecccCccCCcCCCCCCCCC
Confidence 4455555555555555554443
No 66
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=92.88 E-value=0.068 Score=35.51 Aligned_cols=33 Identities=27% Similarity=0.570 Sum_probs=28.8
Q ss_pred ceEEcccCCCcccceeccccceeccCCCccccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVS 95 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG 95 (98)
+..-|+||..+..-|++.++-+|--|.+|-|.|
T Consensus 5 ~lKPCPFCG~~~~~v~~~~g~~~v~C~~CgA~~ 37 (64)
T PRK09710 5 NVKPCPFCGCPSVTVKAISGYYRAKCNGCESRT 37 (64)
T ss_pred cccCCCCCCCceeEEEecCceEEEEcCCCCcCc
Confidence 345699999999999999888889999999876
No 67
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.062 Score=45.77 Aligned_cols=19 Identities=37% Similarity=1.062 Sum_probs=10.8
Q ss_pred cccccCCCcc--------eEEcccCCC
Q 034326 54 IMCESCNGKG--------WLVCDFCGG 72 (98)
Q Consensus 54 i~Ce~CnG~G--------WllCdfCkG 72 (98)
+.|..|+|.| -+-|.-|-|
T Consensus 199 ~vc~gc~g~G~~~y~~~~~m~c~sc~G 225 (406)
T KOG2813|consen 199 MVCHGCSGSGSNSYGIGTPMHCMSCTG 225 (406)
T ss_pred eeccCcCCCCccccccCcceecccccC
Confidence 4466666665 555555555
No 68
>PRK14292 chaperone protein DnaJ; Provisional
Probab=90.66 E-value=0.18 Score=39.72 Aligned_cols=46 Identities=28% Similarity=0.550 Sum_probs=32.9
Q ss_pred ccccccCCCcce-------EEcccCCCcccceecc----c-cceeccCCCcccccccC
Q 034326 53 GIMCESCNGKGW-------LVCDFCGGQKTNVKAQ----N-NRIYRRCPTCRAVSTPI 98 (98)
Q Consensus 53 gi~Ce~CnG~GW-------llCdfCkG~KtNVKse----~-~RiYRRCPtCkAvG~ii 98 (98)
.+.|+.|+|.|- -.|.-|.|.-.-+.-. + -.+...|++|.+.|+++
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 196 (371)
T PRK14292 139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII 196 (371)
T ss_pred eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence 378999999884 5799999975333211 1 13467999999999864
No 69
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=89.21 E-value=0.3 Score=29.38 Aligned_cols=31 Identities=32% Similarity=0.752 Sum_probs=21.0
Q ss_pred EcccCCCcccceec--cc--cceeccCCCcccccc
Q 034326 66 VCDFCGGQKTNVKA--QN--NRIYRRCPTCRAVST 96 (98)
Q Consensus 66 lCdfCkG~KtNVKs--e~--~RiYRRCPtCkAvG~ 96 (98)
-|+||.|+...++. .+ .+-|-.|..|.|.|-
T Consensus 3 PCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~ 37 (53)
T TIGR03655 3 PCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGP 37 (53)
T ss_pred CCCCCCCcceeeEeccCCCCCEEEEECCCCCCCcc
Confidence 49999997665652 21 233348999999873
No 70
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=88.69 E-value=0.27 Score=34.74 Aligned_cols=19 Identities=42% Similarity=1.088 Sum_probs=9.2
Q ss_pred ccccCCCcceEEcccCCCc
Q 034326 55 MCESCNGKGWLVCDFCGGQ 73 (98)
Q Consensus 55 ~Ce~CnG~GWllCdfCkG~ 73 (98)
.|..|+|.|=..|..|+|+
T Consensus 77 ~C~~C~G~Gk~~C~~C~G~ 95 (111)
T PLN03165 77 KCINCDGAGSLTCTTCQGS 95 (111)
T ss_pred ECCCCCCcceeeCCCCCCC
Confidence 4555555554444444444
No 71
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=88.62 E-value=0.32 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.739 Sum_probs=20.2
Q ss_pred EEcccCCCcccceeccccc-----eeccCCCccc
Q 034326 65 LVCDFCGGQKTNVKAQNNR-----IYRRCPTCRA 93 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~R-----iYRRCPtCkA 93 (98)
.-|+||+....-++.+... .|-.|..|.|
T Consensus 4 kPCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 4 KPCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred cCCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 3599994455555555433 7888999988
No 72
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=87.94 E-value=0.28 Score=37.22 Aligned_cols=21 Identities=38% Similarity=1.062 Sum_probs=17.2
Q ss_pred ccccccCCCcceEE-----cccCCCc
Q 034326 53 GIMCESCNGKGWLV-----CDFCGGQ 73 (98)
Q Consensus 53 gi~Ce~CnG~GWll-----CdfCkG~ 73 (98)
...|..|+|.|-++ |+.|+|.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~ 124 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGT 124 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCc
Confidence 46799999999887 8888873
No 73
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=87.44 E-value=0.22 Score=43.04 Aligned_cols=25 Identities=36% Similarity=0.971 Sum_probs=21.5
Q ss_pred hhhhccccccCCCc------ceEEcccCCCc
Q 034326 49 EVEVGIMCESCNGK------GWLVCDFCGGQ 73 (98)
Q Consensus 49 ~~e~gi~Ce~CnG~------GWllCdfCkG~ 73 (98)
.|+.+-+|.-|+-| |.|.|.-|||-
T Consensus 11 dedl~ElCPVCGDkVSGYHYGLLTCESCKGF 41 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVSGYHYGLLTCESCKGF 41 (475)
T ss_pred ccccccccccccCccccceeeeeehhhhhhH
Confidence 46788899999876 89999999994
No 74
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=87.41 E-value=0.35 Score=36.67 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEcccCCCcccceeccccceeccCCCccccccc
Q 034326 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|+-|.|+...++.+ ++|++|.+.|++
T Consensus 100 ~~C~~C~G~G~~i~~~-----~~C~~C~G~G~v 127 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQ-----RECDTCAGTGRF 127 (186)
T ss_pred CcCCCCCCeeEEecCC-----CCCCCCCCccEE
Confidence 4699999986554432 689999999875
No 75
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=86.87 E-value=0.35 Score=35.50 Aligned_cols=28 Identities=39% Similarity=0.842 Sum_probs=20.8
Q ss_pred EEcccCCCcccceecc-----cccee--ccCCCcc
Q 034326 65 LVCDFCGGQKTNVKAQ-----NNRIY--RRCPTCR 92 (98)
Q Consensus 65 llCdfCkG~KtNVKse-----~~RiY--RRCPtCk 92 (98)
+.|++|++..|+|.+. +|.+. |.||.|.
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~ 35 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACG 35 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccC
Confidence 4699999999888753 34444 7898884
No 76
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=86.66 E-value=0.71 Score=26.38 Aligned_cols=34 Identities=32% Similarity=0.625 Sum_probs=25.7
Q ss_pred cceEEcccCCCcccceeccccceeccCCCccccc
Q 034326 62 KGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVS 95 (98)
Q Consensus 62 ~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG 95 (98)
.|-+.|..|+..-+.-+..+++.|-+|.+.+-.|
T Consensus 3 ~g~l~C~~CG~~m~~~~~~~~~~yy~C~~~~~~~ 36 (58)
T PF13408_consen 3 SGLLRCGHCGSKMTRRKRKGKYRYYRCSNRRRKG 36 (58)
T ss_pred CCcEEcccCCcEeEEEECCCCceEEEcCCCcCCC
Confidence 5788999998876665555678999998876443
No 77
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=0.62 Score=39.88 Aligned_cols=22 Identities=41% Similarity=1.078 Sum_probs=13.9
Q ss_pred ccccCCCcceEEcccCCCcccc
Q 034326 55 MCESCNGKGWLVCDFCGGQKTN 76 (98)
Q Consensus 55 ~Ce~CnG~GWllCdfCkG~KtN 76 (98)
.|-.|-|+|=++|.-|.|.-.|
T Consensus 189 ~ch~c~gRG~~vc~gc~g~G~~ 210 (406)
T KOG2813|consen 189 FCHACLGRGAMVCHGCSGSGSN 210 (406)
T ss_pred hhhcccCCCceeccCcCCCCcc
Confidence 3666666776666666665433
No 78
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=82.82 E-value=0.25 Score=35.96 Aligned_cols=39 Identities=38% Similarity=1.094 Sum_probs=22.6
Q ss_pred hccccccCCC-----------------------cceEEccc--CCCcccceeccccceeccCC---Ccccc
Q 034326 52 VGIMCESCNG-----------------------KGWLVCDF--CGGQKTNVKAQNNRIYRRCP---TCRAV 94 (98)
Q Consensus 52 ~gi~Ce~CnG-----------------------~GWllCdf--CkG~KtNVKse~~RiYRRCP---tCkAv 94 (98)
.|..|..|+. .||++||. |+-.--++--.+.| |+ .|+++
T Consensus 44 ~~~~C~~C~~~~~~~~l~Nql~l~iR~~i~~YY~gwl~Cdd~~C~~~TR~~~~~~~r----C~~~~~C~G~ 110 (188)
T PF08996_consen 44 SGLQCPNCSTPLSPASLVNQLELQIREHISRYYEGWLVCDDPTCGNRTRQLSLYGKR----CPGAPGCKGK 110 (188)
T ss_dssp TEEEETTT--B--HHHHHHHHHHHHHHHHHHHHH--CCCCTCCCHHCCCSTTSTTTC----ST-STT-HHC
T ss_pred CcCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHhCceeCcccccCcccccccCCCC----CCCcccccce
Confidence 4677888876 48999999 97554444333333 99 99653
No 79
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=82.50 E-value=0.76 Score=42.72 Aligned_cols=28 Identities=36% Similarity=0.813 Sum_probs=22.6
Q ss_pred hhhhccccccCCCcceE------------EcccCCCcccc
Q 034326 49 EVEVGIMCESCNGKGWL------------VCDFCGGQKTN 76 (98)
Q Consensus 49 ~~e~gi~Ce~CnG~GWl------------lCdfCkG~KtN 76 (98)
+.-.|-.||.|.|.||+ -||.|+|++-|
T Consensus 726 FNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 726 FNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred ccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 33455779999999994 69999999877
No 80
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=79.15 E-value=1.8 Score=28.04 Aligned_cols=34 Identities=26% Similarity=0.684 Sum_probs=25.3
Q ss_pred cccccCcc-ccccchhhhhcccccc--CCCcceEEcccCCC
Q 034326 35 SLKSKPAL-CAPVKQEVEVGIMCES--CNGKGWLVCDFCGG 72 (98)
Q Consensus 35 ~~f~kp~~-C~p~~Q~~e~gi~Ce~--CnG~GWllCdfCkG 72 (98)
+.|..|.. |-+ ......|+. |+..+|+.|.+|+.
T Consensus 12 ~~f~tP~~~cF~----~~~~~~C~~~gC~~~s~I~C~~Ckk 48 (63)
T PF04236_consen 12 PPFETPVDFCFP----KNVAGDCDITGCNNTSFIRCAYCKK 48 (63)
T ss_pred CCCCCHHHHhCC----CCCcCcCCCCCCCCcCEEEccccCC
Confidence 45666654 433 345677998 99999999999985
No 81
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=77.42 E-value=1.4 Score=36.12 Aligned_cols=37 Identities=41% Similarity=0.778 Sum_probs=23.4
Q ss_pred CCCCCCCCCcccccCccccccchhhhhccccccCCCcceEEcccCCCc
Q 034326 26 SSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQ 73 (98)
Q Consensus 26 sss~srpsh~~f~kp~~C~p~~Q~~e~gi~Ce~CnG~GWllCdfCkG~ 73 (98)
...|-|||+--|+.|-. |.-|.|..|+|+| |..||+.
T Consensus 241 ~~~R~rpsyFPFTePS~--------Evdv~~~~~~g~g---c~~ck~~ 277 (339)
T PRK00488 241 VKIRFRPSYFPFTEPSA--------EVDVSCFKCGGKG---CRVCKGT 277 (339)
T ss_pred CeEEecCCCCCCCCCce--------EEEEEEeccCCCc---ccccCCC
Confidence 45677888777887743 4556666666665 5555543
No 82
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=77.38 E-value=2.2 Score=30.65 Aligned_cols=35 Identities=17% Similarity=0.483 Sum_probs=27.2
Q ss_pred ceEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
.+++|..|+-.-|...-++..+.-+|-.|-|.+-|
T Consensus 96 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKEGRVSLLKCEACGAKAPL 130 (133)
T ss_pred heEECCCCCCCCcEEEEeCCeEEEecccCCCCCcc
Confidence 46888999999898886655556799999987643
No 83
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=76.82 E-value=1.9 Score=24.72 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=8.7
Q ss_pred cccccCCCcceE
Q 034326 54 IMCESCNGKGWL 65 (98)
Q Consensus 54 i~Ce~CnG~GWl 65 (98)
..|+.|++-|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 467888887765
No 84
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=75.99 E-value=2.1 Score=29.76 Aligned_cols=28 Identities=29% Similarity=0.594 Sum_probs=15.9
Q ss_pred EEcccCCCcccceeccccceeccCCCcc
Q 034326 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
..|.||+-++-.|+-..++..+.|+.|.
T Consensus 22 f~CP~Cge~~v~v~~~k~~~h~~C~~CG 49 (99)
T PRK14892 22 FECPRCGKVSISVKIKKNIAIITCGNCG 49 (99)
T ss_pred eECCCCCCeEeeeecCCCcceEECCCCC
Confidence 4555555554444444456666777764
No 85
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=74.74 E-value=2.8 Score=31.34 Aligned_cols=34 Identities=24% Similarity=0.601 Sum_probs=27.7
Q ss_pred eEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 64 WllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
+++|..|+-.-|...-++.-++.+|-.|-|.+-|
T Consensus 98 yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~~v 131 (201)
T PRK12336 98 YVICSECGLPDTRLVKEDRVLMLRCDACGAHRPV 131 (201)
T ss_pred eEECCCCCCCCcEEEEcCCeEEEEcccCCCCccc
Confidence 6889999999998877766678899999887643
No 86
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=74.40 E-value=2.1 Score=25.02 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=22.1
Q ss_pred CCCcceEEcccCCCcccceeccccceeccCCCccc
Q 034326 59 CNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 59 CnG~GWllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
--+.| .+|+.|... .+..-.++...+|-.|+.
T Consensus 14 RW~~g-~~CP~Cg~~--~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 14 RWPDG-FVCPHCGST--KHYRLKTRGRYRCKACRK 45 (46)
T ss_pred cCCCC-CCCCCCCCe--eeEEeCCCCeEECCCCCC
Confidence 34556 569999887 344444478889999974
No 87
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=74.20 E-value=2.9 Score=30.25 Aligned_cols=34 Identities=21% Similarity=0.562 Sum_probs=28.4
Q ss_pred eEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 64 WllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
+++|..|+-.-|...-++.-+..+|-.|-|.+-|
T Consensus 102 yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 102 YVICPECGSPDTKLIKEGRIWVLKCEACGAETPV 135 (138)
T ss_pred cEECCCCCCCCcEEEEcCCeEEEEcccCCCCCcC
Confidence 6888999999998887766789999999987654
No 88
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.96 E-value=1.5 Score=39.72 Aligned_cols=24 Identities=42% Similarity=1.086 Sum_probs=17.2
Q ss_pred ccccccCCCcceE------------EcccCCCcccc
Q 034326 53 GIMCESCNGKGWL------------VCDFCGGQKTN 76 (98)
Q Consensus 53 gi~Ce~CnG~GWl------------lCdfCkG~KtN 76 (98)
+-.|+.|.|.|-+ .|+-|.|+.-|
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence 4679999999954 46666666544
No 89
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=73.24 E-value=2.3 Score=35.15 Aligned_cols=39 Identities=36% Similarity=0.819 Sum_probs=29.4
Q ss_pred cccccCCCcc----------------eEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKG----------------WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~G----------------WllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.| |+.|+-|.|.-.- -++|-||++|...+|+
T Consensus 144 ~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~-----~~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 144 PKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGET-----ISLKDRCKTCSGAKVV 198 (337)
T ss_pred CCCCCCCCCCceeEEEeccccccccceeEeccCCCcccc-----ccccccCcccccchhh
Confidence 4588888887 5778888886221 3578899999988875
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.46 E-value=3.6 Score=34.15 Aligned_cols=26 Identities=38% Similarity=0.912 Sum_probs=18.0
Q ss_pred CcceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 61 GKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 61 G~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
..+.+.|-+|+-+ ..+..+||.|...
T Consensus 237 ~~~~l~Ch~Cg~~--------~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 237 KEGKLRCHYCGYQ--------EPIPKTCPQCGSE 262 (505)
T ss_pred CCCeEEcCCCcCc--------CCCCCCCCCCCCC
Confidence 4567777777655 2367799999753
No 91
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=70.09 E-value=1.6 Score=38.43 Aligned_cols=38 Identities=42% Similarity=1.014 Sum_probs=26.2
Q ss_pred cccccCCCcceEEcccCCCcccceecc-ccceeccCCCcccc
Q 034326 54 IMCESCNGKGWLVCDFCGGQKTNVKAQ-NNRIYRRCPTCRAV 94 (98)
Q Consensus 54 i~Ce~CnG~GWllCdfCkG~KtNVKse-~~RiYRRCPtCkAv 94 (98)
..|.-|.++|| +|..| +.+-|--. +.+--+||-+|.|+
T Consensus 502 ~~C~lC~~~gf-iCe~C--q~~~iiyPF~~~~~~rC~~C~av 540 (580)
T KOG1829|consen 502 KECDLCTGKGF-ICELC--QHNDIIYPFETRNTRRCSTCLAV 540 (580)
T ss_pred hhchhhccCee-eeeec--cCCCcccccccccceeHHHHHHH
Confidence 44999999998 59999 43333222 24555889999875
No 92
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=69.73 E-value=1.7 Score=30.79 Aligned_cols=31 Identities=26% Similarity=0.745 Sum_probs=26.6
Q ss_pred eEEcccCCCcccceeccccceeccCCCcccc
Q 034326 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 64 WllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
+++|..|+...|...-++.-++-+|-.|-|.
T Consensus 93 yVlC~~C~spdT~l~k~~r~~~l~C~aCGa~ 123 (125)
T PF01873_consen 93 YVLCPECGSPDTELIKEGRLIFLKCKACGAS 123 (125)
T ss_dssp HSSCTSTSSSSEEEEEETTCCEEEETTTSCE
T ss_pred EEEcCCCCCCccEEEEcCCEEEEEecccCCc
Confidence 5678888889999988888889999999875
No 93
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=69.53 E-value=3.9 Score=28.47 Aligned_cols=31 Identities=26% Similarity=0.753 Sum_probs=25.9
Q ss_pred ceEEcccCCCcccceeccccceeccCCCccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
-+++|..|+-.-|...-++.-++.+|-.|-|
T Consensus 79 ~yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 109 (110)
T smart00653 79 EYVLCPECGSPDTELIKENRLFFLKCEACGA 109 (110)
T ss_pred hcEECCCCCCCCcEEEEeCCeEEEEccccCC
Confidence 4678888888889888887778899999976
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=69.05 E-value=3.7 Score=29.83 Aligned_cols=28 Identities=32% Similarity=0.761 Sum_probs=20.1
Q ss_pred ceEEcccCCCcccceeccccceeccCCCcccccccC
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTPI 98 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~ii 98 (98)
.|. |+-|+-. ....+-+||.|++.|.++
T Consensus 354 ~~~-c~~cg~~-------~~~~~~~c~~c~~~~~~~ 381 (389)
T PRK11788 354 RYR-CRNCGFT-------ARTLYWHCPSCKAWETIK 381 (389)
T ss_pred CEE-CCCCCCC-------CccceeECcCCCCccCcC
Confidence 354 7777644 345788999999988764
No 95
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=68.69 E-value=2.3 Score=41.52 Aligned_cols=24 Identities=29% Similarity=0.732 Sum_probs=17.2
Q ss_pred ccccccCCCcceE------------EcccCCCcccc
Q 034326 53 GIMCESCNGKGWL------------VCDFCGGQKTN 76 (98)
Q Consensus 53 gi~Ce~CnG~GWl------------lCdfCkG~KtN 76 (98)
+-.|+.|.|.|-+ .||.|+|+.-|
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 4569999999953 56666666554
No 96
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=68.36 E-value=3.5 Score=37.51 Aligned_cols=15 Identities=40% Similarity=0.873 Sum_probs=12.1
Q ss_pred hccccccCCCcceEE
Q 034326 52 VGIMCESCNGKGWLV 66 (98)
Q Consensus 52 ~gi~Ce~CnG~GWll 66 (98)
.+-.|+.|.|.|-+.
T Consensus 737 ~~G~C~~C~G~G~~~ 751 (943)
T PRK00349 737 KGGRCEACQGDGVIK 751 (943)
T ss_pred CCCCCCcccccceEE
Confidence 356799999999764
No 97
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=67.24 E-value=4.1 Score=25.39 Aligned_cols=29 Identities=34% Similarity=0.677 Sum_probs=19.1
Q ss_pred EEcccCCCcccce-eccccceeccCCCccc
Q 034326 65 LVCDFCGGQKTNV-KAQNNRIYRRCPTCRA 93 (98)
Q Consensus 65 llCdfCkG~KtNV-Kse~~RiYRRCPtCkA 93 (98)
|+|.-|...--=+ +.+..-+.-|||.|.+
T Consensus 23 LIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 23 LICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred EECcccchhhcccccccCCceEEEcCCCCC
Confidence 4555555443334 5667788889999975
No 98
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=67.00 E-value=4.9 Score=23.46 Aligned_cols=28 Identities=29% Similarity=0.624 Sum_probs=19.4
Q ss_pred EEcccCCCcc---cceeccccceeccCCCcc
Q 034326 65 LVCDFCGGQK---TNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 65 llCdfCkG~K---tNVKse~~RiYRRCPtCk 92 (98)
+.|+||...+ -|=|+.+..---||..|+
T Consensus 6 v~CP~C~s~~~v~k~G~~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 6 VHCPRCQSTEGVKKNGKSPSGHQRYRCKDCR 36 (36)
T ss_pred eeCCCCCCCCcceeCCCCCCCCEeEecCcCC
Confidence 5788998766 555665555555788886
No 99
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=64.40 E-value=2.8 Score=24.14 Aligned_cols=34 Identities=21% Similarity=0.647 Sum_probs=26.8
Q ss_pred CCCcceEEcccCCCcccceec-cccceeccCCCcc
Q 034326 59 CNGKGWLVCDFCGGQKTNVKA-QNNRIYRRCPTCR 92 (98)
Q Consensus 59 CnG~GWllCdfCkG~KtNVKs-e~~RiYRRCPtCk 92 (98)
|.-=|+++|+.|-..+..+.. ++++-.|-|-.|.
T Consensus 21 Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~ 55 (57)
T cd00065 21 CRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCY 55 (57)
T ss_pred cCcCcCCcChHHcCCeeecCcccCCCccEeChHHh
Confidence 344489999999999888776 5677888888875
No 100
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=61.28 E-value=5.6 Score=36.30 Aligned_cols=14 Identities=29% Similarity=0.930 Sum_probs=8.5
Q ss_pred eeccCCCccccccc
Q 034326 84 IYRRCPTCRAVSTP 97 (98)
Q Consensus 84 iYRRCPtCkAvG~i 97 (98)
+|.-|++|-+.|.+
T Consensus 67 v~~~c~~c~G~gkv 80 (715)
T COG1107 67 VYDTCPECGGTGKV 80 (715)
T ss_pred EEeecccCCCceeE
Confidence 56666666666554
No 101
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=61.18 E-value=4.8 Score=36.71 Aligned_cols=47 Identities=32% Similarity=0.649 Sum_probs=29.1
Q ss_pred hhhhccccccCCCcce----EEcccCCCcccceecc-ccceec-----cCCCccccc
Q 034326 49 EVEVGIMCESCNGKGW----LVCDFCGGQKTNVKAQ-NNRIYR-----RCPTCRAVS 95 (98)
Q Consensus 49 ~~e~gi~Ce~CnG~GW----llCdfCkG~KtNVKse-~~RiYR-----RCPtCkAvG 95 (98)
+.+-+++|+.|.|+|- ..|++|.|.-.-++-. -.++.- -|+.|+-.+
T Consensus 49 ~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~ 105 (715)
T COG1107 49 FASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKP 105 (715)
T ss_pred cccCCCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCC
Confidence 3344688999999884 5799998874444333 122222 488886543
No 102
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=58.40 E-value=5.8 Score=29.72 Aligned_cols=29 Identities=31% Similarity=0.747 Sum_probs=20.6
Q ss_pred EEcccCCCccccee----cc-cccee--ccCCCccc
Q 034326 65 LVCDFCGGQKTNVK----AQ-NNRIY--RRCPTCRA 93 (98)
Q Consensus 65 llCdfCkG~KtNVK----se-~~RiY--RRCPtCkA 93 (98)
+.|+||+...|.|. ++ ++-|- |.|+.|..
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~ 36 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHE 36 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCC
Confidence 36999999999885 23 34444 45999964
No 103
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=58.16 E-value=6.5 Score=25.33 Aligned_cols=29 Identities=28% Similarity=0.801 Sum_probs=12.6
Q ss_pred cceEEcccCCCcccceeccccceeccCCCccc
Q 034326 62 KGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 62 ~GWllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
+.|++|--|.. |++|+- --++-.|+.|..
T Consensus 28 ~v~IlCNDC~~-~s~v~f--H~lg~KC~~C~S 56 (61)
T PF14599_consen 28 KVWILCNDCNA-KSEVPF--HFLGHKCSHCGS 56 (61)
T ss_dssp EEEEEESSS---EEEEE----TT----TTTS-
T ss_pred EEEEECCCCCC-ccceee--eHhhhcCCCCCC
Confidence 46666666655 445543 347778888863
No 104
>PRK11823 DNA repair protein RadA; Provisional
Probab=57.72 E-value=6.6 Score=32.11 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=11.1
Q ss_pred ccceeccCCCcccccc
Q 034326 81 NNRIYRRCPTCRAVST 96 (98)
Q Consensus 81 ~~RiYRRCPtCkAvG~ 96 (98)
..+.+-|||+|++-|.
T Consensus 17 ~~~~~g~Cp~C~~w~t 32 (446)
T PRK11823 17 SPKWLGRCPECGAWNT 32 (446)
T ss_pred CcccCeeCcCCCCccc
Confidence 4467778888877654
No 105
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=57.23 E-value=5.7 Score=22.73 Aligned_cols=24 Identities=29% Similarity=0.717 Sum_probs=10.5
Q ss_pred EcccCCCcccceeccccceeccCCCc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTC 91 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtC 91 (98)
.|+.|+.+. +--+..+-...|+.|
T Consensus 2 ~Cp~Cg~~~--~~~D~~~g~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKE--IVFDPERGELVCPNC 25 (43)
T ss_dssp SBTTTSSSE--EEEETTTTEEEETTT
T ss_pred CCcCCcCCc--eEEcCCCCeEECCCC
Confidence 355555543 222222223356666
No 106
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=56.96 E-value=4.5 Score=24.19 Aligned_cols=27 Identities=48% Similarity=1.035 Sum_probs=17.3
Q ss_pred cccCCCcc----cceeccccceeccCCCccc
Q 034326 67 CDFCGGQK----TNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 67 CdfCkG~K----tNVKse~~RiYRRCPtCkA 93 (98)
||+|++.- .-+|-.|..-|-=|+||+.
T Consensus 1 Cd~CG~~I~~eP~~~k~~~~~y~fCC~tC~~ 31 (37)
T PF08394_consen 1 CDYCGGEITGEPIVVKIGNKVYYFCCPTCLS 31 (37)
T ss_pred CCccCCcccCCEEEEEECCeEEEEECHHHHH
Confidence 88998653 3466644444555699975
No 107
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=56.36 E-value=4.8 Score=30.69 Aligned_cols=29 Identities=41% Similarity=0.885 Sum_probs=20.8
Q ss_pred EEcccCCCccccee----c-ccccee--ccCCCccc
Q 034326 65 LVCDFCGGQKTNVK----A-QNNRIY--RRCPTCRA 93 (98)
Q Consensus 65 llCdfCkG~KtNVK----s-e~~RiY--RRCPtCkA 93 (98)
+.|+||.-..|-|. + +++-|- |.|+.|..
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~ 36 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGE 36 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhccccccc
Confidence 36999999999886 2 345444 45999964
No 108
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=56.09 E-value=10 Score=27.60 Aligned_cols=34 Identities=29% Similarity=0.623 Sum_probs=24.9
Q ss_pred CCcceEEcccCCCcccceeccccceeccCCCcccccc
Q 034326 60 NGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVST 96 (98)
Q Consensus 60 nG~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~ 96 (98)
-|.|-++|+-|.-+-.=-++ . .-..||.|....|
T Consensus 108 ~g~G~l~C~~Cg~~~~~~~~--~-~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 108 VGPGTLVCENCGHEVELTHP--E-RLPPCPKCGHTEF 141 (146)
T ss_pred ecCceEecccCCCEEEecCC--C-cCCCCCCCCCCee
Confidence 48999999999776433332 2 4678999988766
No 109
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=55.71 E-value=7.6 Score=32.00 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=10.1
Q ss_pred ccceeccCCCcccccc
Q 034326 81 NNRIYRRCPTCRAVST 96 (98)
Q Consensus 81 ~~RiYRRCPtCkAvG~ 96 (98)
..+.+-|||+|++-+.
T Consensus 17 ~~~~~g~Cp~C~~w~t 32 (454)
T TIGR00416 17 SPKWQGKCPACHAWNT 32 (454)
T ss_pred CccccEECcCCCCccc
Confidence 4456677777766554
No 110
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=54.34 E-value=8.5 Score=26.51 Aligned_cols=7 Identities=29% Similarity=1.255 Sum_probs=4.0
Q ss_pred cccccCC
Q 034326 54 IMCESCN 60 (98)
Q Consensus 54 i~Ce~Cn 60 (98)
..|..|+
T Consensus 72 ~~C~~Cg 78 (117)
T PRK00564 72 LECKDCS 78 (117)
T ss_pred EEhhhCC
Confidence 4466665
No 111
>PF13790 DUF4182: Domain of unknown function (DUF4182)
Probab=53.62 E-value=11 Score=22.88 Aligned_cols=30 Identities=23% Similarity=0.785 Sum_probs=25.0
Q ss_pred ceEEcccCCCcccceeccc-cceeccCCCcc
Q 034326 63 GWLVCDFCGGQKTNVKAQN-NRIYRRCPTCR 92 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~-~RiYRRCPtCk 92 (98)
|-++|..|.+.-.-+-+|. ..+|--|..|.
T Consensus 2 GtIvCq~C~~~Id~~e~ekV~~lYg~C~~~e 32 (38)
T PF13790_consen 2 GTIVCQHCNETIDHFETEKVTTLYGKCGKCE 32 (38)
T ss_pred CEEEeccccceeeeecCCcEEEEEEECCCCc
Confidence 6789999999988888775 58999998763
No 112
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=53.59 E-value=5.7 Score=26.16 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=17.1
Q ss_pred ceEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
-|..|+||..+..+.....++=.-+|-+|-+.|=+
T Consensus 32 ~~~~CPfH~d~~pS~~i~~~k~~~~Cf~Cg~~Gd~ 66 (97)
T PF01807_consen 32 YRCLCPFHDDKTPSFSINPDKNRFKCFGCGKGGDV 66 (97)
T ss_dssp EEE--SSS--SS--EEEETTTTEEEETTT--EE-H
T ss_pred EEEECcCCCCCCCceEEECCCCeEEECCCCCCCcH
Confidence 36789999987665555443334578899887754
No 113
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=52.37 E-value=6.1 Score=31.45 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=6.8
Q ss_pred cccccCCCcceEEcc
Q 034326 54 IMCESCNGKGWLVCD 68 (98)
Q Consensus 54 i~Ce~CnG~GWllCd 68 (98)
.+|++-.|++.+-|+
T Consensus 28 ~py~e~~g~~~vtCP 42 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCP 42 (238)
T ss_pred CccccccCCCCCcCC
Confidence 344445555444333
No 114
>PRK14873 primosome assembly protein PriA; Provisional
Probab=50.50 E-value=12 Score=32.65 Aligned_cols=32 Identities=34% Similarity=0.855 Sum_probs=22.4
Q ss_pred cccccCCC-------cceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 54 IMCESCNG-------KGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 54 i~Ce~CnG-------~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
..|..|++ .+.+.|-+|+-+. +-.+||.|...
T Consensus 393 ~~C~~C~~~L~~h~~~~~l~Ch~CG~~~---------~p~~Cp~Cgs~ 431 (665)
T PRK14873 393 ARCRHCTGPLGLPSAGGTPRCRWCGRAA---------PDWRCPRCGSD 431 (665)
T ss_pred eECCCCCCceeEecCCCeeECCCCcCCC---------cCccCCCCcCC
Confidence 45777763 5678888887541 35699999764
No 115
>PRK06386 replication factor A; Reviewed
Probab=48.91 E-value=8.1 Score=31.89 Aligned_cols=17 Identities=29% Similarity=0.853 Sum_probs=13.1
Q ss_pred eecc-ccceeccCCCccc
Q 034326 77 VKAQ-NNRIYRRCPTCRA 93 (98)
Q Consensus 77 VKse-~~RiYRRCPtCkA 93 (98)
|+-+ ++.++.|||.|+-
T Consensus 227 v~i~~gsgli~rCP~C~R 244 (358)
T PRK06386 227 VSVGQGSRIFTKCSVCNK 244 (358)
T ss_pred EEEcCCcEeEecCcCCCe
Confidence 3444 5799999999974
No 116
>PRK05580 primosome assembly protein PriA; Validated
Probab=47.29 E-value=16 Score=31.50 Aligned_cols=25 Identities=36% Similarity=0.845 Sum_probs=15.9
Q ss_pred cceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 62 KGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 62 ~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
.+-+.|-+|+... .+-.+||.|...
T Consensus 406 ~~~l~Ch~Cg~~~--------~~~~~Cp~Cg~~ 430 (679)
T PRK05580 406 QRRLRCHHCGYQE--------PIPKACPECGST 430 (679)
T ss_pred CCeEECCCCcCCC--------CCCCCCCCCcCC
Confidence 3556666666441 256789999654
No 117
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=46.28 E-value=20 Score=19.32 Aligned_cols=28 Identities=21% Similarity=0.586 Sum_probs=13.2
Q ss_pred EcccCCCcccceeccccceeccCCCccc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
.|..|+-.-.=.++.+..-.-+||.|.+
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 3455544333333322234556777765
No 118
>PRK04023 DNA polymerase II large subunit; Validated
Probab=46.26 E-value=12 Score=35.68 Aligned_cols=33 Identities=33% Similarity=0.797 Sum_probs=24.4
Q ss_pred cccccCCCc-ceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 54 IMCESCNGK-GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 54 i~Ce~CnG~-GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
..|..|+-. .+..|+.|+.. ....+|||.|+..
T Consensus 627 RfCpsCG~~t~~frCP~CG~~--------Te~i~fCP~CG~~ 660 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTH--------TEPVYRCPRCGIE 660 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCC--------CCcceeCccccCc
Confidence 569999866 67799999876 2244588888754
No 119
>PRK07218 replication factor A; Provisional
Probab=45.71 E-value=9.2 Score=32.05 Aligned_cols=13 Identities=31% Similarity=0.933 Sum_probs=10.9
Q ss_pred ccceeccCCCccc
Q 034326 81 NNRIYRRCPTCRA 93 (98)
Q Consensus 81 ~~RiYRRCPtCkA 93 (98)
++.|+.|||.|+-
T Consensus 293 gsgli~rCP~C~r 305 (423)
T PRK07218 293 GSGLIERCPECGR 305 (423)
T ss_pred CCcceecCcCccc
Confidence 4689999999974
No 120
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=45.45 E-value=9.2 Score=23.67 Aligned_cols=9 Identities=56% Similarity=1.446 Sum_probs=7.8
Q ss_pred cccCCCccc
Q 034326 67 CDFCGGQKT 75 (98)
Q Consensus 67 CdfCkG~Kt 75 (98)
|+||.|+|.
T Consensus 1 CP~C~~kkk 9 (43)
T PF03470_consen 1 CPFCPGKKK 9 (43)
T ss_pred CCCCCCCCC
Confidence 899999874
No 121
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=45.35 E-value=15 Score=20.90 Aligned_cols=26 Identities=27% Similarity=0.641 Sum_probs=14.0
Q ss_pred EcccCCCcccceeccccceeccCCCccc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
.|+.|+.--.--+...+++ +|++|-.
T Consensus 3 FCp~C~nlL~p~~~~~~~~--~C~~C~Y 28 (35)
T PF02150_consen 3 FCPECGNLLYPKEDKEKRV--ACRTCGY 28 (35)
T ss_dssp BETTTTSBEEEEEETTTTE--EESSSS-
T ss_pred eCCCCCccceEcCCCccCc--CCCCCCC
Confidence 3666665543333334444 8888853
No 122
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=44.40 E-value=3.1 Score=36.25 Aligned_cols=25 Identities=40% Similarity=1.200 Sum_probs=19.6
Q ss_pred ceEEcccCCCcccceeccccceeccCCCccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
|+-+|.||. +|++-. +..|||.||-
T Consensus 37 gy~ic~fc~---~~irq~---lngrcpacrr 61 (480)
T COG5175 37 GYQICQFCY---NNIRQN---LNGRCPACRR 61 (480)
T ss_pred ccHHHHHHH---HHHHhh---ccCCChHhhh
Confidence 899999995 455543 7789999984
No 123
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=44.05 E-value=15 Score=25.80 Aligned_cols=30 Identities=30% Similarity=0.713 Sum_probs=18.5
Q ss_pred EEcccCCCcccceeccccceeccCCCccccc
Q 034326 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVS 95 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~RiYRRCPtCkAvG 95 (98)
|-|-||+.. +.|.-.+.--...||+|-+.-
T Consensus 1 v~C~fC~~~-s~~~~~~~~~~w~C~~C~q~N 30 (131)
T PF09779_consen 1 VNCWFCGQN-SKVPYDNRNSNWTCPHCEQYN 30 (131)
T ss_pred CeeccCCCC-CCCCCCCCCCeeECCCCCCcc
Confidence 458899654 444443322237899998764
No 124
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=43.28 E-value=11 Score=32.31 Aligned_cols=23 Identities=39% Similarity=0.911 Sum_probs=15.7
Q ss_pred EcccCCCcccceeccccceeccCCCcc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
+|++|.|. .||-+.. +-||+.|.
T Consensus 352 ~Cp~Cg~~---m~S~G~~-g~rC~kCg 374 (421)
T COG1571 352 VCPRCGGR---MKSAGRN-GFRCKKCG 374 (421)
T ss_pred CCCccCCc---hhhcCCC-Cccccccc
Confidence 46666655 5666655 88899885
No 125
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=41.41 E-value=12 Score=20.30 Aligned_cols=25 Identities=32% Similarity=0.785 Sum_probs=12.3
Q ss_pred cccCCCcccceeccccceeccCCCcccc
Q 034326 67 CDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 67 CdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
|.-|.+.-..+.+ -.-|+||.|...
T Consensus 6 C~~CG~~t~~~~~---g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 6 CGRCGAPTKPAPG---GWARRCPSCGHE 30 (32)
T ss_dssp -TTT--BEEE-SS---SS-EEESSSS-E
T ss_pred cCcCCccccCCCC---cCEeECCCCcCE
Confidence 6667666444443 367889999754
No 126
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=41.27 E-value=20 Score=25.19 Aligned_cols=13 Identities=23% Similarity=0.889 Sum_probs=8.9
Q ss_pred ceeccCCCccccc
Q 034326 83 RIYRRCPTCRAVS 95 (98)
Q Consensus 83 RiYRRCPtCkAvG 95 (98)
+.+.+||.|.+..
T Consensus 105 ~~~~~CP~Cgs~~ 117 (135)
T PRK03824 105 HAFLKCPKCGSRD 117 (135)
T ss_pred ccCcCCcCCCCCC
Confidence 4566788887654
No 127
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=40.90 E-value=20 Score=20.30 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=15.4
Q ss_pred EcccCCCcccceecc---ccceeccCCCcccc
Q 034326 66 VCDFCGGQKTNVKAQ---NNRIYRRCPTCRAV 94 (98)
Q Consensus 66 lCdfCkG~KtNVKse---~~RiYRRCPtCkAv 94 (98)
.|+.|+.. -+|..+ .....-|||.|+.+
T Consensus 4 ~CP~C~~~-f~v~~~~l~~~~~~vrC~~C~~~ 34 (37)
T PF13719_consen 4 TCPNCQTR-FRVPDDKLPAGGRKVRCPKCGHV 34 (37)
T ss_pred ECCCCCce-EEcCHHHcccCCcEEECCCCCcE
Confidence 45555443 333333 33446788888764
No 128
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.52 E-value=23 Score=28.14 Aligned_cols=47 Identities=30% Similarity=0.603 Sum_probs=32.1
Q ss_pred CCCCCcccccCccccccchhhhhccccccCCCcceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 30 SRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 30 srpsh~~f~kp~~C~p~~Q~~e~gi~Ce~CnG~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
..|+|...-.+..|.=-.+..+.|..|.-|.. -||+-. ..||+|++.
T Consensus 232 i~P~~~~vd~ra~CfCh~k~v~~GyvCs~Cls------i~C~~p------------~~C~~Cgt~ 278 (279)
T TIGR00627 232 SKPNHNSVDYRASCFCHHQLVSIGFVCSVCLS------VLCQYT------------PICKTCKTA 278 (279)
T ss_pred cCCCCCCCCCcceeeecCccccceEECCCccC------CcCCCC------------CCCCCCCCC
Confidence 34666666677777755556778888888854 466533 489999874
No 129
>PRK00807 50S ribosomal protein L24e; Validated
Probab=39.51 E-value=11 Score=23.28 Aligned_cols=26 Identities=35% Similarity=0.839 Sum_probs=14.1
Q ss_pred EEcccCCCcccc-------eeccccceeccCC-Ccc
Q 034326 65 LVCDFCGGQKTN-------VKAQNNRIYRRCP-TCR 92 (98)
Q Consensus 65 llCdfCkG~KtN-------VKse~~RiYRRCP-tCk 92 (98)
-+|+||.. +.. |+.+ +++|+-|- .|+
T Consensus 2 ~~C~fcG~-~I~pg~G~~~vr~D-gkv~~Fcs~KC~ 35 (52)
T PRK00807 2 RTCSFCGK-EIEPGTGKMYVKKD-GTILYFCSSKCE 35 (52)
T ss_pred cccCCCCC-eEcCCCCeEEEEeC-CcEEEEeCHHHH
Confidence 47999943 333 3333 45666554 564
No 130
>PF07484 Collar: Phage Tail Collar Domain; InterPro: IPR011083 This entry is represented by a domain found in Bacteriophage T4, Gp12. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This region is occasionally found in conjunction with IPR005003 from INTERPRO. Most of the proteins appear to be phage tail proteins; however some appear to be involved in other processes. For instance the RhiB protein (Q03314 from SWISSPROT) from Rhizobium leguminosarum may be involved in plant-microbe interactions []. A related protein, microcystin related protein (MrpB, Q9L3N1 from SWISSPROT) is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate (P10930 from SWISSPROT) suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop [] and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologues but the intervening sequence is not. Much of the function of P10930 from SWISSPROT appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the collar and may bind SO4. The long unconserved region maybe due to domain swapping in and out of a loop or due to rapid evolution.; PDB: 1OCY_A 2XGF_C 1H6W_A.
Probab=39.02 E-value=16 Score=22.68 Aligned_cols=13 Identities=54% Similarity=1.408 Sum_probs=7.6
Q ss_pred cceEEcccCCCcccce
Q 034326 62 KGWLVCDFCGGQKTNV 77 (98)
Q Consensus 62 ~GWllCdfCkG~KtNV 77 (98)
.||++|| |+.-|+
T Consensus 13 ~gwl~cd---G~~~~~ 25 (57)
T PF07484_consen 13 SGWLLCD---GQSLSI 25 (57)
T ss_dssp TTEEESB---S-B--T
T ss_pred chhhhcC---CCcCCh
Confidence 6899876 776554
No 131
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=38.29 E-value=29 Score=18.93 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=16.0
Q ss_pred EEcccCCCcccceecc---ccceeccCCCcccc
Q 034326 65 LVCDFCGGQKTNVKAQ---NNRIYRRCPTCRAV 94 (98)
Q Consensus 65 llCdfCkG~KtNVKse---~~RiYRRCPtCkAv 94 (98)
+.|+.|+.+ ..|..+ .+...-+||.|...
T Consensus 3 ~~CP~C~~~-~~v~~~~~~~~~~~v~C~~C~~~ 34 (38)
T TIGR02098 3 IQCPNCKTS-FRVVDSQLGANGGKVRCGKCGHV 34 (38)
T ss_pred EECCCCCCE-EEeCHHHcCCCCCEEECCCCCCE
Confidence 456666543 444433 12235678888765
No 132
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.08 E-value=15 Score=27.86 Aligned_cols=21 Identities=29% Similarity=0.825 Sum_probs=15.2
Q ss_pred cccccCCCcceEEcccCCCccc
Q 034326 54 IMCESCNGKGWLVCDFCGGQKT 75 (98)
Q Consensus 54 i~Ce~CnG~GWllCdfCkG~Kt 75 (98)
++|++|... -..|+.|+..|+
T Consensus 180 ~lC~~C~~~-~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 180 CLCGICDES-LRICPICRSPKT 200 (207)
T ss_pred Eeccccccc-CccCCCCcChhh
Confidence 567788765 667888877764
No 133
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=36.55 E-value=22 Score=27.90 Aligned_cols=45 Identities=31% Similarity=0.639 Sum_probs=30.7
Q ss_pred CCCcccccCccccccchhhhhccccccCCCcceEEcccCCCcccceeccccceeccCCCcc
Q 034326 32 PSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 32 psh~~f~kp~~C~p~~Q~~e~gi~Ce~CnG~GWllCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
|.+....-+..|-=-.+..+.|..|.-| ++-||+-.+ ...|+||.
T Consensus 232 p~~~~vd~ra~Cfch~k~vd~g~vCsvC------LsIfc~~p~----------~~~C~tC~ 276 (276)
T PF03850_consen 232 PTQSSVDFRASCFCHRKVVDIGYVCSVC------LSIFCEFPD----------GGICPTCG 276 (276)
T ss_pred CCCCCCCcceeeeecCCcccceeEchhh------hhhhhCCCC----------CCCCCCCC
Confidence 4444444556677666688899999998 577777652 22499995
No 134
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=36.41 E-value=28 Score=23.86 Aligned_cols=11 Identities=45% Similarity=1.081 Sum_probs=6.4
Q ss_pred eccCCCccccc
Q 034326 85 YRRCPTCRAVS 95 (98)
Q Consensus 85 YRRCPtCkAvG 95 (98)
+.+||.|....
T Consensus 87 ~~~CP~Cgs~~ 97 (114)
T PRK03681 87 VRRCPQCHGDM 97 (114)
T ss_pred CCcCcCcCCCC
Confidence 35577776543
No 135
>PRK11032 hypothetical protein; Provisional
Probab=36.29 E-value=27 Score=26.10 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=24.1
Q ss_pred CCcceEEcccCCCcccceeccccceeccCCCcccccc
Q 034326 60 NGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVST 96 (98)
Q Consensus 60 nG~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~ 96 (98)
.|.|-|+|.-|.-+..=-++ -.--.||.|.+..|
T Consensus 120 vg~G~LvC~~Cg~~~~~~~p---~~i~pCp~C~~~~F 153 (160)
T PRK11032 120 VGLGNLVCEKCHHHLAFYTP---EVLPLCPKCGHDQF 153 (160)
T ss_pred eecceEEecCCCCEEEecCC---CcCCCCCCCCCCee
Confidence 58899999999876433222 24468999987765
No 136
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=36.06 E-value=22 Score=34.68 Aligned_cols=32 Identities=34% Similarity=0.783 Sum_probs=21.5
Q ss_pred cccccCCCcc-eEEcccCCCcccceeccccceeccCCCccc
Q 034326 54 IMCESCNGKG-WLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 54 i~Ce~CnG~G-WllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
..|..|.... +..|+.|+.+.+. .| .||+|.+
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~-------vy-~CPsCGa 700 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEP-------VY-VCPDCGA 700 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCC-------ce-eCccCCC
Confidence 5699998642 4599999887432 23 6666655
No 137
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=35.90 E-value=24 Score=27.05 Aligned_cols=29 Identities=28% Similarity=0.723 Sum_probs=18.8
Q ss_pred EcccCCCcccceeccccceeccCCCccccccc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
.|..|... +.+ .....-++|++|...-|.
T Consensus 101 fC~~CG~~-~~~--~~~~~~~~C~~c~~~~yp 129 (256)
T PRK00241 101 FCGYCGHP-MHP--SKTEWAMLCPHCRERYYP 129 (256)
T ss_pred cccccCCC-Cee--cCCceeEECCCCCCEECC
Confidence 56677554 333 234566899999987764
No 138
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=35.58 E-value=19 Score=19.81 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=7.3
Q ss_pred cCCCcccccc
Q 034326 87 RCPTCRAVST 96 (98)
Q Consensus 87 RCPtCkAvG~ 96 (98)
+|+.|+.+-|
T Consensus 11 ~C~~C~~~~Y 20 (37)
T PF01753_consen 11 RCSRCKSVYY 20 (37)
T ss_dssp EETTTSSSEE
T ss_pred cCCCCCCEEe
Confidence 7888877654
No 139
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=35.27 E-value=28 Score=27.57 Aligned_cols=37 Identities=30% Similarity=0.768 Sum_probs=26.7
Q ss_pred hccccccCCCcceEEcccCCCcccceecc--cc---------ceeccCCCcccc
Q 034326 52 VGIMCESCNGKGWLVCDFCGGQKTNVKAQ--NN---------RIYRRCPTCRAV 94 (98)
Q Consensus 52 ~gi~Ce~CnG~GWllCdfCkG~KtNVKse--~~---------RiYRRCPtCkAv 94 (98)
..|-|..|+-- -=+|.|-|-+=+ .+ |||-+|+.|.+.
T Consensus 39 f~i~C~~C~~~------I~kG~rFNA~Ke~v~~E~Yls~~I~rF~~kC~~C~~~ 86 (324)
T PF04502_consen 39 FNIWCNTCGEY------IYKGVRFNARKEKVGNEKYLSTPIYRFYIKCPRCSNE 86 (324)
T ss_pred ccCcCCCCccc------cccceeeeeeeEecCCCccccceEEEEEEEcCCCCCE
Confidence 34779999865 346788887655 33 788899999763
No 140
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=35.19 E-value=22 Score=24.74 Aligned_cols=9 Identities=44% Similarity=1.343 Sum_probs=7.5
Q ss_pred eccCCCccc
Q 034326 85 YRRCPTCRA 93 (98)
Q Consensus 85 YRRCPtCkA 93 (98)
+.+||.|.-
T Consensus 124 f~~C~~C~k 132 (147)
T PF01927_consen 124 FWRCPGCGK 132 (147)
T ss_pred EEECCCCCC
Confidence 678999974
No 141
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=34.52 E-value=31 Score=23.57 Aligned_cols=8 Identities=38% Similarity=1.290 Sum_probs=4.3
Q ss_pred cCCCcccc
Q 034326 87 RCPTCRAV 94 (98)
Q Consensus 87 RCPtCkAv 94 (98)
+||.|...
T Consensus 88 ~CP~Cgs~ 95 (113)
T PRK12380 88 QCPHCHGE 95 (113)
T ss_pred cCcCCCCC
Confidence 36666543
No 143
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.47 E-value=29 Score=23.72 Aligned_cols=11 Identities=36% Similarity=1.102 Sum_probs=5.6
Q ss_pred eccCCCccccc
Q 034326 85 YRRCPTCRAVS 95 (98)
Q Consensus 85 YRRCPtCkAvG 95 (98)
+.+||.|....
T Consensus 86 ~~~CP~Cgs~~ 96 (115)
T TIGR00100 86 LYRCPKCHGIM 96 (115)
T ss_pred CccCcCCcCCC
Confidence 34466665443
No 144
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=34.09 E-value=37 Score=24.82 Aligned_cols=27 Identities=37% Similarity=0.885 Sum_probs=21.1
Q ss_pred ccccCCCcce------------------EEcccCCCcccceeccc
Q 034326 55 MCESCNGKGW------------------LVCDFCGGQKTNVKAQN 81 (98)
Q Consensus 55 ~Ce~CnG~GW------------------llCdfCkG~KtNVKse~ 81 (98)
.|..|+..|. ..|+.|.-+.+.||+-+
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ev~~~~ 46 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNEVKSGG 46 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccceEEECc
Confidence 5788877776 35999999999898764
No 145
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=33.87 E-value=24 Score=22.60 Aligned_cols=7 Identities=57% Similarity=1.421 Sum_probs=3.4
Q ss_pred cCCCccc
Q 034326 87 RCPTCRA 93 (98)
Q Consensus 87 RCPtCkA 93 (98)
.||.|.|
T Consensus 23 vCp~Cga 29 (54)
T PF14446_consen 23 VCPECGA 29 (54)
T ss_pred ECCCCCC
Confidence 3555544
No 146
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=32.70 E-value=16 Score=31.26 Aligned_cols=19 Identities=42% Similarity=1.043 Sum_probs=14.7
Q ss_pred CCcceEEcccC-CCccccee
Q 034326 60 NGKGWLVCDFC-GGQKTNVK 78 (98)
Q Consensus 60 nG~GWllCdfC-kG~KtNVK 78 (98)
-|.|.-+|||| .|.-.-|+
T Consensus 40 ~gDGYSvCD~C~~Grldei~ 59 (382)
T COG1103 40 WGDGYSVCDFCLEGRLDEIT 59 (382)
T ss_pred hcCCcchhhhhccCcccccc
Confidence 58899999999 57755444
No 147
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=32.08 E-value=16 Score=22.81 Aligned_cols=39 Identities=28% Similarity=0.714 Sum_probs=14.9
Q ss_pred ccchhhhhccccccCCCcceEEcccCCCcccceeccccceeccCCCccc
Q 034326 45 PVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 45 p~~Q~~e~gi~Ce~CnG~GWllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
+++.....-.+| +| |+-+|-||-.+ ++.+ ---|||.||.
T Consensus 7 ~~d~~d~~~~PC-~C---gf~IC~~C~~~---i~~~---~~g~CPgCr~ 45 (48)
T PF14570_consen 7 ELDETDKDFYPC-EC---GFQICRFCYHD---ILEN---EGGRCPGCRE 45 (48)
T ss_dssp B--CCCTT--SS-TT---S----HHHHHH---HTTS---S-SB-TTT--
T ss_pred ccccCCCccccC-cC---CCcHHHHHHHH---HHhc---cCCCCCCCCC
Confidence 343334444667 45 78899999543 1111 2458999985
No 148
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.98 E-value=28 Score=24.37 Aligned_cols=29 Identities=28% Similarity=0.788 Sum_probs=17.6
Q ss_pred EEcccCCCcccceeccc--------cceeccCCCccc
Q 034326 65 LVCDFCGGQKTNVKAQN--------NRIYRRCPTCRA 93 (98)
Q Consensus 65 llCdfCkG~KtNVKse~--------~RiYRRCPtCkA 93 (98)
+.|++|.|+-.=|..+. ....-.|+.|.|
T Consensus 3 ~~CpYCg~~~~l~~~~~iYg~~~~~~~~~y~C~~C~A 39 (102)
T PF11672_consen 3 IICPYCGGPAELVDGSEIYGHRYDDGPYLYVCTPCDA 39 (102)
T ss_pred cccCCCCCeeEEcccchhcCccCCCCceeEECCCCCc
Confidence 46888888654444221 122357999987
No 149
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=30.90 E-value=39 Score=19.10 Aligned_cols=27 Identities=26% Similarity=0.712 Sum_probs=15.0
Q ss_pred cccCCCcccceeccccceeccCCCcccc
Q 034326 67 CDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 67 CdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
|+-|+..-.-++. +.-..-+|++|.++
T Consensus 2 CP~C~~~l~~~~~-~~~~id~C~~C~G~ 28 (41)
T PF13453_consen 2 CPRCGTELEPVRL-GDVEIDVCPSCGGI 28 (41)
T ss_pred cCCCCcccceEEE-CCEEEEECCCCCeE
Confidence 5666654333333 33445568888754
No 150
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=30.51 E-value=16 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.775 Sum_probs=24.0
Q ss_pred EcccCCCcccceeccccceeccCCCccc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
+|+-||-.. ||-+.+.-=|.-|..||.
T Consensus 4 ~CPlCkt~~-n~gsk~~pNyntCT~Ck~ 30 (61)
T PF05715_consen 4 LCPLCKTTL-NVGSKDPPNYNTCTECKS 30 (61)
T ss_pred cCCcccchh-hcCCCCCCCccHHHHHhh
Confidence 689999887 999998888999999985
No 151
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=30.32 E-value=21 Score=30.08 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=13.2
Q ss_pred cceeccCCCcccccccC
Q 034326 82 NRIYRRCPTCRAVSTPI 98 (98)
Q Consensus 82 ~RiYRRCPtCkAvG~ii 98 (98)
...+.+||.|++.|+++
T Consensus 392 ~~~~~~cp~c~G~g~v~ 408 (487)
T COG1530 392 EVLSERCPGCKGTGHVR 408 (487)
T ss_pred eeeeeECCCceeeEEEe
Confidence 46788888888888763
No 152
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=30.09 E-value=29 Score=28.09 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=21.6
Q ss_pred eEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 64 WllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
|.+|+||..+..+......+=.-.|-+|.+.|=+
T Consensus 34 ~~~CPfh~ek~pSf~v~~~k~~~~Cf~Cg~~Gd~ 67 (415)
T TIGR01391 34 VGLCPFHHEKTPSFSVSPEKQFYHCFGCGAGGDA 67 (415)
T ss_pred EeeCCCCCCCCCeEEEEcCCCcEEECCCCCCCCH
Confidence 5689999877544433322223469999887754
No 153
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=29.66 E-value=27 Score=22.88 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=7.9
Q ss_pred cccccCCCcceEEcccCCCc
Q 034326 54 IMCESCNGKGWLVCDFCGGQ 73 (98)
Q Consensus 54 i~Ce~CnG~GWllCdfCkG~ 73 (98)
..|.+|+-.=..-|.-|..|
T Consensus 26 F~CPnCG~~~I~RC~~CRk~ 45 (59)
T PRK14890 26 FLCPNCGEVIIYRCEKCRKQ 45 (59)
T ss_pred eeCCCCCCeeEeechhHHhc
Confidence 33555522213334444433
No 154
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=29.24 E-value=22 Score=28.57 Aligned_cols=21 Identities=43% Similarity=1.154 Sum_probs=12.5
Q ss_pred cceEEcccCCCcccceeccccceeccCCCcc
Q 034326 62 KGWLVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 62 ~GWllCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
.|=|+|-.|.-+ +--+||+|+
T Consensus 67 nGHlaCssC~~~----------~~~~CP~Cr 87 (299)
T KOG3002|consen 67 NGHLACSSCRTK----------VSNKCPTCR 87 (299)
T ss_pred CCcEehhhhhhh----------hcccCCccc
Confidence 366666666654 334677765
No 155
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=29.10 E-value=38 Score=19.97 Aligned_cols=30 Identities=43% Similarity=0.870 Sum_probs=18.2
Q ss_pred CCCcceEEcccCCCcccceecc-ccc--eeccCCCc
Q 034326 59 CNGKGWLVCDFCGGQKTNVKAQ-NNR--IYRRCPTC 91 (98)
Q Consensus 59 CnG~GWllCdfCkG~KtNVKse-~~R--iYRRCPtC 91 (98)
-+.+=|-.|..|... -++. ++| ....||.|
T Consensus 23 s~~~v~W~C~~Cgh~---w~~~v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 23 SNKKVWWKCPKCGHE---WKASVNDRTRRGKGCPYC 55 (55)
T ss_pred CCCEEEEECCCCCCe---eEccHhhhccCCCCCCCC
Confidence 366678888888432 2222 334 47788887
No 156
>KOG0970 consensus DNA polymerase alpha, catalytic subunit [Replication, recombination and repair]
Probab=29.02 E-value=31 Score=33.94 Aligned_cols=32 Identities=41% Similarity=0.807 Sum_probs=21.0
Q ss_pred CcceEEcc--cCCCcccceeccccceeccCCCcc
Q 034326 61 GKGWLVCD--FCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 61 G~GWllCd--fCkG~KtNVKse~~RiYRRCPtCk 92 (98)
-+||++|| +|+-...-.+....|----|+.|+
T Consensus 1319 y~g~lvCdd~tC~~~TR~~sv~~~R~g~~C~~C~ 1352 (1429)
T KOG0970|consen 1319 YLGWLVCDDPTCGFRTRQQSVFGKREGPLCPGCR 1352 (1429)
T ss_pred hhhheeecCcccccccccceeeccccCccCcccc
Confidence 36899997 787654444444454444599998
No 157
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.76 E-value=43 Score=30.22 Aligned_cols=26 Identities=38% Similarity=0.912 Sum_probs=19.2
Q ss_pred CcceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 61 GKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 61 G~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
.+|-|.|-+|+-+ .++-..||.|-..
T Consensus 459 ~~~~L~CH~Cg~~--------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 459 ATGQLRCHYCGYQ--------EPIPQSCPECGSE 484 (730)
T ss_pred CCCeeEeCCCCCC--------CCCCCCCCCCCCC
Confidence 3577788888766 4578899999654
No 158
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=28.75 E-value=36 Score=23.61 Aligned_cols=19 Identities=53% Similarity=1.123 Sum_probs=14.4
Q ss_pred cccccCCCcce------EEcccCCC
Q 034326 54 IMCESCNGKGW------LVCDFCGG 72 (98)
Q Consensus 54 i~Ce~CnG~GW------llCdfCkG 72 (98)
-.||.|.++|. ++|--|.-
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~~ 60 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCGV 60 (102)
T ss_pred EeccccCCCceEEECCEEEEecCCC
Confidence 35999988886 67877754
No 159
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=28.29 E-value=23 Score=28.17 Aligned_cols=27 Identities=30% Similarity=0.773 Sum_probs=17.8
Q ss_pred eEEcccCCCcccceeccccceeccCCCcc
Q 034326 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 64 WllCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
|..|+.|+.--.+-.-+.| +.-||.|-
T Consensus 27 ~~~c~~c~~~~~~~~l~~~--~~vc~~c~ 53 (292)
T PRK05654 27 WTKCPSCGQVLYRKELEAN--LNVCPKCG 53 (292)
T ss_pred eeECCCccchhhHHHHHhc--CCCCCCCC
Confidence 9999999875333322333 56899884
No 160
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=27.76 E-value=20 Score=33.63 Aligned_cols=32 Identities=25% Similarity=0.671 Sum_probs=0.0
Q ss_pred cccccCCCcce-EEcccCCCcccceeccccceeccCCCccc
Q 034326 54 IMCESCNGKGW-LVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 54 i~Ce~CnG~GW-llCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
..|..|+-.++ ..|++|+...+ .+++||.|+.
T Consensus 656 r~Cp~Cg~~t~~~~Cp~CG~~T~--------~~~~Cp~C~~ 688 (900)
T PF03833_consen 656 RRCPKCGKETFYNRCPECGSHTE--------PVYVCPDCGI 688 (900)
T ss_dssp -----------------------------------------
T ss_pred ccCcccCCcchhhcCcccCCccc--------cceecccccc
Confidence 56999998875 57999988733 5567777764
No 161
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=27.29 E-value=36 Score=29.55 Aligned_cols=23 Identities=39% Similarity=1.038 Sum_probs=20.1
Q ss_pred hhccccccCCCc--------------ceEEcccCCCc
Q 034326 51 EVGIMCESCNGK--------------GWLVCDFCGGQ 73 (98)
Q Consensus 51 e~gi~Ce~CnG~--------------GWllCdfCkG~ 73 (98)
-++..|..|+-+ |-+.|-||+|-
T Consensus 126 ~~~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~ge 162 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLEALQLLDNETGEFHCENCGGE 162 (436)
T ss_pred cccccCCccccchhhhHHHHhhcccCceEEEecCCCc
Confidence 356899999988 99999999986
No 162
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.24 E-value=32 Score=28.33 Aligned_cols=17 Identities=35% Similarity=1.046 Sum_probs=10.8
Q ss_pred cccccCCCcceEEcccC
Q 034326 54 IMCESCNGKGWLVCDFC 70 (98)
Q Consensus 54 i~Ce~CnG~GWllCdfC 70 (98)
+-|..||--|.+.|.-|
T Consensus 263 ~rC~~CNENGLvrCp~C 279 (281)
T KOG2824|consen 263 LRCLECNENGLVRCPVC 279 (281)
T ss_pred EECcccCCCCceeCCcc
Confidence 34666666666666665
No 163
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=27.23 E-value=36 Score=23.60 Aligned_cols=9 Identities=33% Similarity=1.117 Sum_probs=6.9
Q ss_pred cccCCCccc
Q 034326 67 CDFCGGQKT 75 (98)
Q Consensus 67 CdfCkG~Kt 75 (98)
|++|+|.++
T Consensus 2 C~~C~~~~~ 10 (89)
T TIGR03829 2 CRWCEEEKA 10 (89)
T ss_pred CcccCCCce
Confidence 899988544
No 164
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=26.94 E-value=37 Score=23.68 Aligned_cols=25 Identities=44% Similarity=1.034 Sum_probs=15.5
Q ss_pred EEcccCCCcccceeccccceeccCCCcc
Q 034326 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
..|+||. |++||-...-|. .|-.|.
T Consensus 36 y~CpfCg--k~~vkR~a~GIW-~C~~C~ 60 (91)
T TIGR00280 36 YVCPFCG--KKTVKRGSTGIW-TCRKCG 60 (91)
T ss_pred ccCCCCC--CCceEEEeeEEE-EcCCCC
Confidence 3577776 566777766664 355554
No 165
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.40 E-value=31 Score=20.56 Aligned_cols=32 Identities=25% Similarity=0.604 Sum_probs=20.2
Q ss_pred cceEEcccCCCccccee---ccccceeccCCCccc
Q 034326 62 KGWLVCDFCGGQKTNVK---AQNNRIYRRCPTCRA 93 (98)
Q Consensus 62 ~GWllCdfCkG~KtNVK---se~~RiYRRCPtCkA 93 (98)
=|-++|+.|-.++.-+. ....+-.|-|..|..
T Consensus 31 CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~ 65 (69)
T PF01363_consen 31 CGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYS 65 (69)
T ss_dssp T--EEECCCS-EEEEET--GGTESEEEEE-HHHHH
T ss_pred CCCEECCchhCCEEcccccccCCCCcCEECHHHHH
Confidence 37799999998887665 344567788887753
No 166
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.26 E-value=40 Score=26.53 Aligned_cols=42 Identities=31% Similarity=0.661 Sum_probs=20.1
Q ss_pred ccccCCCcce------EEcccCCCcc--cceeccccceeccCCCccccccc
Q 034326 55 MCESCNGKGW------LVCDFCGGQK--TNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 55 ~Ce~CnG~GW------llCdfCkG~K--tNVKse~~RiYRRCPtCkAvG~i 97 (98)
.|+.|.|.|- ..|+.|.|.- .|++-.....| -|..|.+.|.+
T Consensus 166 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~ 215 (288)
T KOG0715|consen 166 DCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLV 215 (288)
T ss_pred ccccccCcCcccccccccchhhhCcccccccccCCccee-eccccccccee
Confidence 3666666552 2355665544 33333333333 45555555543
No 167
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=25.86 E-value=52 Score=18.64 Aligned_cols=29 Identities=24% Similarity=0.586 Sum_probs=16.7
Q ss_pred EEcccCCCcccceecc---ccceeccCCCcccc
Q 034326 65 LVCDFCGGQKTNVKAQ---NNRIYRRCPTCRAV 94 (98)
Q Consensus 65 llCdfCkG~KtNVKse---~~RiYRRCPtCkAv 94 (98)
+.|+-|+. +-+|..+ .+...-||+.|..+
T Consensus 3 i~Cp~C~~-~y~i~d~~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 3 ITCPNCQA-KYEIDDEKIPPKGRKVRCSKCGHV 34 (36)
T ss_pred EECCCCCC-EEeCCHHHCCCCCcEEECCCCCCE
Confidence 34555543 3455444 45567788888653
No 168
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=25.85 E-value=41 Score=23.39 Aligned_cols=25 Identities=48% Similarity=1.073 Sum_probs=15.4
Q ss_pred EEcccCCCcccceeccccceeccCCCcc
Q 034326 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
..|+||. |++||-.+.-|. .|-.|.
T Consensus 37 y~CpfCg--k~~vkR~a~GIW-~C~~C~ 61 (90)
T PTZ00255 37 YFCPFCG--KHAVKRQAVGIW-RCKGCK 61 (90)
T ss_pred ccCCCCC--CCceeeeeeEEE-EcCCCC
Confidence 3577776 566777666554 355554
No 169
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=25.62 E-value=43 Score=22.15 Aligned_cols=29 Identities=21% Similarity=0.645 Sum_probs=20.4
Q ss_pred EEcccCCCcccceecc----c-cceeccCC--Cccc
Q 034326 65 LVCDFCGGQKTNVKAQ----N-NRIYRRCP--TCRA 93 (98)
Q Consensus 65 llCdfCkG~KtNVKse----~-~RiYRRCP--tCkA 93 (98)
+.|++|+..-.-.+|+ . .+.|+.|. .|-.
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~~~~~Y~qC~N~eCg~ 37 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSA 37 (72)
T ss_pred ccCCCCCCccEEEEChhcChhhheeeeecCCCCCCC
Confidence 4689998876555544 3 48999998 7754
No 170
>PRK11827 hypothetical protein; Provisional
Probab=25.55 E-value=47 Score=21.45 Aligned_cols=11 Identities=27% Similarity=0.906 Sum_probs=7.0
Q ss_pred eEEcccCCCcc
Q 034326 64 WLVCDFCGGQK 74 (98)
Q Consensus 64 WllCdfCkG~K 74 (98)
+|.|+.|||.-
T Consensus 8 ILaCP~ckg~L 18 (60)
T PRK11827 8 IIACPVCNGKL 18 (60)
T ss_pred heECCCCCCcC
Confidence 46677777653
No 171
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=25.46 E-value=25 Score=23.49 Aligned_cols=30 Identities=27% Similarity=0.744 Sum_probs=19.3
Q ss_pred EEcccCCCcccceecccc-ceeccCCCcccccc
Q 034326 65 LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVST 96 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~-RiYRRCPtCkAvG~ 96 (98)
+.|.+|+ |-=.+++.. -+...||.||.+-+
T Consensus 5 iRC~~Cn--KlLa~a~~~~yle~KCPrCK~vN~ 35 (60)
T COG4416 5 IRCAKCN--KLLAEAEGQAYLEKKCPRCKEVNE 35 (60)
T ss_pred eehHHHh--HHHHhcccceeeeecCCccceeee
Confidence 4566664 333455554 77888999987654
No 172
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=25.29 E-value=39 Score=28.05 Aligned_cols=17 Identities=29% Similarity=0.792 Sum_probs=12.8
Q ss_pred hhhccccccCCCcceEE
Q 034326 50 VEVGIMCESCNGKGWLV 66 (98)
Q Consensus 50 ~e~gi~Ce~CnG~GWll 66 (98)
+.....|..|+|+|++.
T Consensus 387 e~~~~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 387 EVLGTVCPHCSGTGIVK 403 (414)
T ss_pred HHhcCCCCCCcCeeEEc
Confidence 33456799999999864
No 173
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.25 E-value=33 Score=18.71 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=5.8
Q ss_pred ccCCCcccc
Q 034326 86 RRCPTCRAV 94 (98)
Q Consensus 86 RRCPtCkAv 94 (98)
++||.|.+.
T Consensus 1 K~CP~C~~~ 9 (26)
T PF10571_consen 1 KTCPECGAE 9 (26)
T ss_pred CcCCCCcCC
Confidence 467777653
No 174
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=25.10 E-value=37 Score=33.70 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=18.7
Q ss_pred ccccccCCCcce---------EEcccCCCcccc
Q 034326 53 GIMCESCNGKGW---------LVCDFCGGQKTN 76 (98)
Q Consensus 53 gi~Ce~CnG~GW---------llCdfCkG~KtN 76 (98)
+-.|+.|.|.|- +.|+.|+|+.-|
T Consensus 720 gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 720 LGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 447999999984 478999987655
No 175
>PF12773 DZR: Double zinc ribbon
Probab=24.95 E-value=39 Score=19.14 Aligned_cols=28 Identities=25% Similarity=0.619 Sum_probs=12.9
Q ss_pred cceEEcccCCCcccceeccccceeccCCCccc
Q 034326 62 KGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 62 ~GWllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
.+...|+.|...-. ........||.|.+
T Consensus 10 ~~~~fC~~CG~~l~----~~~~~~~~C~~Cg~ 37 (50)
T PF12773_consen 10 DDAKFCPHCGTPLP----PPDQSKKICPNCGA 37 (50)
T ss_pred ccccCChhhcCChh----hccCCCCCCcCCcC
Confidence 34455555544422 22333445666654
No 176
>PRK06921 hypothetical protein; Provisional
Probab=24.77 E-value=44 Score=25.37 Aligned_cols=14 Identities=21% Similarity=0.767 Sum_probs=12.0
Q ss_pred ccccccCCCcceEE
Q 034326 53 GIMCESCNGKGWLV 66 (98)
Q Consensus 53 gi~Ce~CnG~GWll 66 (98)
...|+-|.+.||+.
T Consensus 32 ~~~Cp~C~dtG~i~ 45 (266)
T PRK06921 32 RYDCPKCKDRGIII 45 (266)
T ss_pred CCCCCCCCCCEEEE
Confidence 45699999999984
No 177
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.72 E-value=40 Score=29.11 Aligned_cols=15 Identities=47% Similarity=1.024 Sum_probs=12.7
Q ss_pred ceeccCCCccccccc
Q 034326 83 RIYRRCPTCRAVSTP 97 (98)
Q Consensus 83 RiYRRCPtCkAvG~i 97 (98)
.+|--||+||+-+.|
T Consensus 366 ~l~W~CPsC~~W~Ti 380 (389)
T COG2956 366 TLYWHCPSCRAWETI 380 (389)
T ss_pred eeeeeCCCccccccc
Confidence 499999999987764
No 178
>PF07621 DUF1582: Protein of unknown function (DUF1582); InterPro: IPR011476 This is a family of hypothetical proteins found in Rhodopirellula baltica.
Probab=24.65 E-value=41 Score=19.48 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=15.5
Q ss_pred eecCCCCCCCCCCCCCcccccCcccc
Q 034326 19 SIMPSSSSSSRSRPSHSLKSKPALCA 44 (98)
Q Consensus 19 ~~lPS~ssss~srpsh~~f~kp~~C~ 44 (98)
|.|||+..+.. .+|..+++|+
T Consensus 1 R~lpsp~~l~~-----~ri~~~~nc~ 21 (29)
T PF07621_consen 1 RALPSPEFLLE-----ARISTLSNCV 21 (29)
T ss_pred CCcCCCCcChh-----hhcCCCcchh
Confidence 45788777766 3588888887
No 179
>PRK12366 replication factor A; Reviewed
Probab=23.91 E-value=34 Score=29.59 Aligned_cols=18 Identities=28% Similarity=0.814 Sum_probs=12.7
Q ss_pred cceeccccceeccCCCccc
Q 034326 75 TNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 75 tNVKse~~RiYRRCPtCkA 93 (98)
..++ +++-+|.+||+|+-
T Consensus 523 ~~i~-~~~~~y~aCp~Cnk 540 (637)
T PRK12366 523 VDIR-KQKIILYLCPNCRK 540 (637)
T ss_pred EEEe-CCCEEEecccccCe
Confidence 3444 34579999999964
No 180
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=23.49 E-value=60 Score=23.61 Aligned_cols=27 Identities=30% Similarity=0.808 Sum_probs=18.0
Q ss_pred ccccCCCcceE------------------EcccCCCcccceeccc
Q 034326 55 MCESCNGKGWL------------------VCDFCGGQKTNVKAQN 81 (98)
Q Consensus 55 ~Ce~CnG~GWl------------------lCdfCkG~KtNVKse~ 81 (98)
.|..|+..|-. .|+.|.-+.+.||+-+
T Consensus 3 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ev~~~~ 47 (161)
T PF03367_consen 3 LCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNNEVKSGG 47 (161)
T ss_dssp E-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEEEEEEEC
T ss_pred cCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEeeeEEECc
Confidence 58888888854 6999999988898654
No 181
>smart00400 ZnF_CHCC zinc finger.
Probab=23.40 E-value=40 Score=19.81 Aligned_cols=32 Identities=19% Similarity=0.491 Sum_probs=18.4
Q ss_pred EcccCCCcccceeccccceeccCCCccccccc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
+|+|+..+....+...++=.-.|-.|.+-|-+
T Consensus 4 ~cPfh~d~~pSf~v~~~kn~~~Cf~cg~gGd~ 35 (55)
T smart00400 4 LCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNV 35 (55)
T ss_pred cCcCCCCCCCCEEEECCCCEEEEeCCCCCCCH
Confidence 68888877665554432222246677665543
No 182
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=22.85 E-value=67 Score=16.75 Aligned_cols=8 Identities=25% Similarity=0.775 Sum_probs=3.4
Q ss_pred cccccCCC
Q 034326 54 IMCESCNG 61 (98)
Q Consensus 54 i~Ce~CnG 61 (98)
+.|++|..
T Consensus 13 ~fC~~~~~ 20 (39)
T cd00021 13 LFCETDRA 20 (39)
T ss_pred EEeCccCh
Confidence 34444433
No 183
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=22.79 E-value=16 Score=29.47 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=24.3
Q ss_pred cceEEcccCCCcccceeccccceeccCCCc
Q 034326 62 KGWLVCDFCGGQKTNVKAQNNRIYRRCPTC 91 (98)
Q Consensus 62 ~GWllCdfCkG~KtNVKse~~RiYRRCPtC 91 (98)
-||++|-+|..++.-++.-.+.--|-|..|
T Consensus 191 CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~C 220 (288)
T KOG1729|consen 191 CGDIVCAPCSRNRFLLPNLSTKPIRVCDIC 220 (288)
T ss_pred cchHhhhhhhcCcccccccCCCCceecHHH
Confidence 399999999999877777766555688877
No 184
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=22.58 E-value=47 Score=20.44 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=11.3
Q ss_pred cCCCcceEEcccCCC
Q 034326 58 SCNGKGWLVCDFCGG 72 (98)
Q Consensus 58 ~CnG~GWllCdfCkG 72 (98)
.---.|+|+|+.|+.
T Consensus 47 ~~i~eg~L~Cp~c~r 61 (68)
T PF03966_consen 47 VEIVEGELICPECGR 61 (68)
T ss_dssp EETTTTEEEETTTTE
T ss_pred ccccCCEEEcCCCCC
Confidence 445679999999863
No 185
>PRK08402 replication factor A; Reviewed
Probab=22.43 E-value=37 Score=27.76 Aligned_cols=11 Identities=45% Similarity=1.234 Sum_probs=7.1
Q ss_pred cceeccCCCcc
Q 034326 82 NRIYRRCPTCR 92 (98)
Q Consensus 82 ~RiYRRCPtCk 92 (98)
+-+|.+||+|+
T Consensus 209 ~~~y~aCp~Cn 219 (355)
T PRK08402 209 VLVYDACPECR 219 (355)
T ss_pred CeeEecCCCCC
Confidence 33677777775
No 186
>KOG3464 consensus 60S ribosomal protein L44 [Translation, ribosomal structure and biogenesis]
Probab=21.52 E-value=43 Score=24.43 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=25.9
Q ss_pred cCCCcceEEcccCCC-----------cccceeccccceeccCCC
Q 034326 58 SCNGKGWLVCDFCGG-----------QKTNVKAQNNRIYRRCPT 90 (98)
Q Consensus 58 ~CnG~GWllCdfCkG-----------~KtNVKse~~RiYRRCPt 90 (98)
+|-+.+|..|.-|.. .|.+.-|+++|-|.||.+
T Consensus 3 nvpkT~~tfc~kc~kh~~hkVtq~k~gk~s~~aQgkr~Ydrkqs 46 (106)
T KOG3464|consen 3 NVPKTRKTFCKKCGKHTAHKVTQYKKGKDSLYAQGKRRYDRKQS 46 (106)
T ss_pred ccCCCCcchhhhhcccchhhhhhhhhcccchHhhcCcccccccC
Confidence 356778888888864 467778899999999965
No 187
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=21.07 E-value=34 Score=26.00 Aligned_cols=27 Identities=37% Similarity=0.810 Sum_probs=16.3
Q ss_pred EEcccCCCcccceeccccceeccCCCc-ccccc
Q 034326 65 LVCDFCGGQKTNVKAQNNRIYRRCPTC-RAVST 96 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~RiYRRCPtC-kAvG~ 96 (98)
..|--|..| |...=.|+||-|| |..||
T Consensus 5 ~~CqdCGNq-----Akk~C~~~rCRtCCk~rg~ 32 (154)
T PF05142_consen 5 ISCQDCGNQ-----AKKDCSHRRCRTCCKSRGF 32 (154)
T ss_pred cchhhhcch-----hhcCCCcchhhhhhccCCC
Confidence 445555443 4455678899886 55554
No 188
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=21.00 E-value=46 Score=16.73 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=6.7
Q ss_pred eccCCCccc
Q 034326 85 YRRCPTCRA 93 (98)
Q Consensus 85 YRRCPtCkA 93 (98)
.++||.|+.
T Consensus 35 ~~~Cp~C~~ 43 (45)
T cd00162 35 KNTCPLCRT 43 (45)
T ss_pred cCCCCCCCC
Confidence 457898875
No 189
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=20.99 E-value=93 Score=17.75 Aligned_cols=7 Identities=43% Similarity=1.417 Sum_probs=3.3
Q ss_pred cCCCccc
Q 034326 87 RCPTCRA 93 (98)
Q Consensus 87 RCPtCkA 93 (98)
.||.|.+
T Consensus 28 ~CP~Cg~ 34 (52)
T TIGR02605 28 TCPECGG 34 (52)
T ss_pred CCCCCCC
Confidence 3555543
No 190
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.72 E-value=68 Score=22.25 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=5.1
Q ss_pred ccCCCcccc
Q 034326 86 RRCPTCRAV 94 (98)
Q Consensus 86 RRCPtCkAv 94 (98)
.+||.|...
T Consensus 93 ~~CP~Cgs~ 101 (124)
T PRK00762 93 IECPVCGNK 101 (124)
T ss_pred CcCcCCCCC
Confidence 456666543
No 191
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=20.66 E-value=35 Score=23.10 Aligned_cols=14 Identities=14% Similarity=0.667 Sum_probs=7.4
Q ss_pred ceeccCCCcccccc
Q 034326 83 RIYRRCPTCRAVST 96 (98)
Q Consensus 83 RiYRRCPtCkAvG~ 96 (98)
-+|+-|+-|-..||
T Consensus 30 pvfk~c~rcgg~G~ 43 (95)
T PF03589_consen 30 PVFKDCERCGGRGY 43 (95)
T ss_pred chhhhhhhhcCCCC
Confidence 35555555555554
No 192
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=20.45 E-value=40 Score=30.94 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=5.5
Q ss_pred ccccCCCcce
Q 034326 55 MCESCNGKGW 64 (98)
Q Consensus 55 ~Ce~CnG~GW 64 (98)
+|..|.|-|-
T Consensus 278 ~Cp~C~G~G~ 287 (943)
T PRK00349 278 ACPTCDGLGV 287 (943)
T ss_pred CCCcCCCcee
Confidence 4555555553
No 194
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=20.40 E-value=63 Score=23.40 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=18.6
Q ss_pred EcccCCCcccc---eeccccceeccCCCccc
Q 034326 66 VCDFCGGQKTN---VKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 66 lCdfCkG~KtN---VKse~~RiYRRCPtCkA 93 (98)
-|+||+-.|.. ||..+++-.--|-.|-+
T Consensus 24 tCp~Cghe~vs~ctvkk~~~~g~~~Cg~CGl 54 (104)
T COG4888 24 TCPRCGHEKVSSCTVKKTVNIGTAVCGNCGL 54 (104)
T ss_pred ecCccCCeeeeEEEEEecCceeEEEcccCcc
Confidence 46666666666 77777776667776643
No 195
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=20.28 E-value=49 Score=22.35 Aligned_cols=19 Identities=32% Similarity=0.844 Sum_probs=14.2
Q ss_pred ceeccccceeccCCCcccc
Q 034326 76 NVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 76 NVKse~~RiYRRCPtCkAv 94 (98)
-|.+++..+.-|||.|-++
T Consensus 8 Kv~~RDGE~~lrCPRC~~~ 26 (65)
T COG4049 8 KVRDRDGEEFLRCPRCGMV 26 (65)
T ss_pred EeeccCCceeeeCCchhHH
Confidence 3556667889999999653
No 196
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=20.25 E-value=58 Score=22.64 Aligned_cols=24 Identities=33% Similarity=0.868 Sum_probs=15.3
Q ss_pred EcccCCCcccceeccccceeccCCCcc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
.|.|| .|++||-...-|. .|..|.
T Consensus 38 ~CpfC--gk~~vkR~a~GIW-~C~~C~ 61 (90)
T PRK03976 38 VCPVC--GRPKVKRVGTGIW-ECRKCG 61 (90)
T ss_pred cCCCC--CCCceEEEEEEEE-EcCCCC
Confidence 57788 3677777766664 466664
No 197
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=20.00 E-value=73 Score=17.92 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=4.6
Q ss_pred ccCCCccc
Q 034326 86 RRCPTCRA 93 (98)
Q Consensus 86 RRCPtCkA 93 (98)
..||+|..
T Consensus 21 ~vC~~Cg~ 28 (52)
T smart00661 21 FVCRKCGY 28 (52)
T ss_pred EECCcCCC
Confidence 35777753
Done!