Query 034326
Match_columns 98
No_of_seqs 15 out of 17
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 21:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exk_A DNAJ protein; extended 97.5 6.4E-05 2.2E-09 45.6 2.9 12 86-97 65-76 (79)
2 2ctt_A DNAJ homolog subfamily 97.3 0.00019 6.6E-09 46.1 3.1 21 54-74 29-55 (104)
3 1exk_A DNAJ protein; extended 97.1 0.00025 8.5E-09 42.9 2.2 47 52-98 10-63 (79)
4 2ctt_A DNAJ homolog subfamily 97.1 0.00031 1E-08 45.2 2.6 37 54-97 46-93 (104)
5 1nlt_A Protein YDJ1, mitochond 96.2 0.0017 5.7E-08 47.6 1.9 21 54-74 39-64 (248)
6 1nlt_A Protein YDJ1, mitochond 96.0 0.0033 1.1E-07 46.0 2.4 39 54-97 55-108 (248)
7 2bx9_A Anti-trap, AT, tryptoph 94.8 0.0078 2.7E-07 36.5 0.8 31 50-98 6-36 (53)
8 1k81_A EIF-2-beta, probable tr 90.7 0.065 2.2E-06 30.2 0.6 33 65-97 1-33 (36)
9 3lcz_A YCZA, inhibitor of trap 90.7 0.077 2.6E-06 32.0 1.0 27 51-77 7-36 (53)
10 3lcz_A YCZA, inhibitor of trap 89.5 0.1 3.5E-06 31.5 0.8 26 65-97 10-35 (53)
11 2d74_B Translation initiation 82.8 0.39 1.3E-05 34.2 1.1 34 64-97 104-137 (148)
12 3cw2_K Translation initiation 80.6 0.42 1.4E-05 33.6 0.5 35 63-97 102-136 (139)
13 1nee_A EIF-2-beta, probable tr 79.4 0.4 1.4E-05 33.7 0.1 34 64-97 102-135 (138)
14 3flo_B DNA polymerase alpha ca 78.8 0.96 3.3E-05 33.3 2.0 39 52-94 48-113 (206)
15 2k16_A Transcription initiatio 75.7 1.1 3.6E-05 27.0 1.3 44 50-93 15-67 (75)
16 2g2k_A EIF-5, eukaryotic trans 74.3 0.8 2.7E-05 33.5 0.5 34 64-97 96-131 (170)
17 2e9h_A EIF-5, eukaryotic trans 73.5 1 3.5E-05 32.5 0.9 34 64-97 103-138 (157)
18 2hlg_A Fruit-specific protein; 66.8 0.72 2.5E-05 27.7 -0.9 22 63-88 14-35 (39)
19 1pft_A TFIIB, PFTFIIBN; N-term 64.1 3.7 0.00013 23.1 1.8 19 54-72 6-32 (50)
20 2k2d_A Ring finger and CHY zin 62.0 4.3 0.00015 25.9 2.0 14 52-65 36-49 (79)
21 1d0q_A DNA primase; zinc-bindi 60.8 2.7 9.2E-05 26.8 0.9 35 63-97 36-70 (103)
22 2hf1_A Tetraacyldisaccharide-1 53.8 7 0.00024 24.4 1.9 8 63-70 25-32 (68)
23 2jr6_A UPF0434 protein NMA0874 53.3 7.3 0.00025 24.3 1.9 8 63-70 25-32 (68)
24 2r6f_A Excinuclease ABC subuni 52.5 6.3 0.00021 34.9 2.1 24 53-76 753-788 (972)
25 2vf7_A UVRA2, excinuclease ABC 52.1 6.5 0.00022 33.8 2.1 23 54-76 639-673 (842)
26 2js4_A UPF0434 protein BB2007; 51.3 8 0.00027 24.2 1.9 10 62-71 24-33 (70)
27 3t7l_A Zinc finger FYVE domain 51.2 8.8 0.0003 24.2 2.1 29 63-92 43-71 (90)
28 1bor_A Transcription factor PM 51.0 6.3 0.00021 21.9 1.2 10 85-94 37-46 (56)
29 1ltl_A DNA replication initiat 50.8 7 0.00024 28.5 1.8 12 86-97 157-168 (279)
30 2pk7_A Uncharacterized protein 50.6 8.7 0.0003 24.0 2.0 9 63-71 25-33 (69)
31 2jny_A Uncharacterized BCR; st 48.5 9.4 0.00032 23.8 1.9 10 62-71 26-35 (67)
32 1wys_A Riken cDNA 2310008M20 p 47.8 11 0.00039 24.1 2.2 21 52-72 13-37 (75)
33 1f62_A Transcription factor WS 47.5 9.6 0.00033 21.1 1.7 17 56-72 3-23 (51)
34 2ri7_A Nucleosome-remodeling f 45.8 6.6 0.00023 26.2 0.9 20 51-71 6-30 (174)
35 1wev_A Riken cDNA 1110020M19; 44.8 12 0.00042 23.4 2.0 25 49-73 12-42 (88)
36 1xwh_A Autoimmune regulator; P 44.6 9 0.00031 22.7 1.3 25 48-72 3-28 (66)
37 2ygr_A Uvrabc system protein A 44.4 9.9 0.00034 33.7 2.0 23 54-76 772-806 (993)
38 3cng_A Nudix hydrolase; struct 43.6 7.6 0.00026 25.5 0.9 26 66-92 5-32 (189)
39 2ku3_A Bromodomain-containing 42.6 12 0.00043 22.9 1.8 24 49-72 12-41 (71)
40 2l43_A N-teminal domain from h 42.5 11 0.00036 23.9 1.4 24 49-72 21-50 (88)
41 1we9_A PHD finger family prote 41.9 13 0.00045 21.4 1.7 9 85-93 49-57 (64)
42 3mpx_A FYVE, rhogef and PH dom 41.3 5.6 0.00019 29.3 0.0 36 55-93 393-428 (434)
43 2e6r_A Jumonji/ARID domain-con 40.3 12 0.00042 23.7 1.5 18 54-71 17-38 (92)
44 3cc2_Z 50S ribosomal protein L 39.4 12 0.0004 26.2 1.4 26 65-93 61-86 (116)
45 2kpi_A Uncharacterized protein 38.0 17 0.00059 21.7 1.8 18 54-71 11-35 (56)
46 3swr_A DNA (cytosine-5)-methyl 36.8 9.7 0.00033 33.6 0.8 36 54-89 56-94 (1002)
47 1wee_A PHD finger family prote 34.9 18 0.00061 21.6 1.5 11 85-95 57-67 (72)
48 4bbr_M Transcription initiatio 34.1 11 0.00036 28.7 0.5 18 54-71 22-49 (345)
49 2egp_A Tripartite motif-contai 32.5 9.6 0.00033 21.5 0.0 31 64-94 32-62 (79)
50 2lri_C Autoimmune regulator; Z 31.7 23 0.00079 21.4 1.7 43 52-95 11-60 (66)
51 1wfk_A Zinc finger, FYVE domai 31.7 16 0.00056 23.0 1.1 31 63-93 32-62 (88)
52 2au3_A DNA primase; zinc ribbo 31.7 13 0.00045 28.3 0.7 34 64-97 34-67 (407)
53 1ffk_W Ribosomal protein L37AE 30.5 19 0.00063 23.1 1.2 24 66-92 29-52 (73)
54 2cr8_A MDM4 protein; ZF-ranbp 26.3 27 0.00091 21.9 1.3 23 66-95 13-35 (53)
55 2kdx_A HYPA, hydrogenase/ureas 25.9 39 0.0013 21.7 2.1 28 62-94 71-99 (119)
56 2p09_A A non-biological ATP bi 25.5 20 0.00067 24.0 0.6 26 68-93 26-53 (81)
57 2elu_A Zinc finger protein 406 24.6 14 0.00047 21.8 -0.3 14 66-79 11-24 (37)
58 2yql_A PHD finger protein 21A; 24.5 33 0.0011 19.5 1.4 21 52-72 8-29 (56)
59 2ysl_A Tripartite motif-contai 24.4 14 0.00047 20.6 -0.3 28 63-94 39-66 (73)
60 1z2q_A LM5-1; membrane protein 24.2 24 0.00082 21.7 0.8 31 63-93 44-75 (84)
61 2ffw_A Midline-1; B-BOX, ring 23.4 28 0.00095 21.2 1.0 27 61-93 27-53 (78)
62 3jyw_9 60S ribosomal protein L 23.2 37 0.0013 21.7 1.6 24 66-92 28-51 (72)
63 1iym_A EL5; ring-H2 finger, ub 21.9 29 0.00098 18.2 0.7 9 86-94 44-52 (55)
64 2ecm_A Ring finger and CHY zin 21.2 29 0.00099 18.1 0.7 25 63-94 28-52 (55)
65 2rpc_A Zinc finger protein ZIC 21.1 76 0.0026 19.1 2.7 21 38-59 11-31 (155)
66 1v5n_A PDI-like hypothetical p 20.9 52 0.0018 20.7 1.9 9 32-40 36-44 (89)
67 1jm7_B BARD1, BRCA1-associated 20.8 32 0.0011 21.3 0.9 9 86-94 56-64 (117)
68 3izc_m 60S ribosomal protein R 20.7 40 0.0014 22.6 1.4 24 66-92 38-61 (92)
69 2l6l_A DNAJ homolog subfamily 20.7 45 0.0015 21.9 1.6 31 61-93 109-141 (155)
70 2dj8_A Protein CBFA2T1; zinc f 20.6 45 0.0015 19.1 1.5 21 51-71 13-33 (60)
71 3ng2_A RNF4, snurf, ring finge 20.3 32 0.0011 18.8 0.7 25 63-94 36-60 (71)
No 1
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.50 E-value=6.4e-05 Score=45.59 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=6.5
Q ss_pred ccCCCccccccc
Q 034326 86 RRCPTCRAVSTP 97 (98)
Q Consensus 86 RRCPtCkAvG~i 97 (98)
.+|++|.+.|++
T Consensus 65 ~~C~~C~G~G~~ 76 (79)
T 1exk_A 65 DPCNKCHGHGRV 76 (79)
T ss_dssp SBCGGGTTSSEE
T ss_pred CcCCCCCCeEEE
Confidence 356666555543
No 2
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00019 Score=46.10 Aligned_cols=21 Identities=52% Similarity=1.217 Sum_probs=12.1
Q ss_pred cccccCCCcc------eEEcccCCCcc
Q 034326 54 IMCESCNGKG------WLVCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~G------WllCdfCkG~K 74 (98)
+.|+.|+|.| ...|+.|+|.-
T Consensus 29 ~~C~~C~G~G~~~g~~~~~C~~C~G~G 55 (104)
T 2ctt_A 29 DTCERCNGKGNEPGTKVQHCHYCGGSG 55 (104)
T ss_dssp EECSSSSSSSSCTTCCCEECSSSSSSC
T ss_pred eECCCCcCCccCCCCCCccCCCCCCCE
Confidence 5566666655 35566666554
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.08 E-value=0.00025 Score=42.94 Aligned_cols=47 Identities=28% Similarity=0.572 Sum_probs=35.0
Q ss_pred hccccccCCCcce------EEcccCCCcccceecccc-ceeccCCCcccccccC
Q 034326 52 VGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVSTPI 98 (98)
Q Consensus 52 ~gi~Ce~CnG~GW------llCdfCkG~KtNVKse~~-RiYRRCPtCkAvG~ii 98 (98)
..+.|+.|+|.|. ..|+.|+|.-.-+..+.. ++...|++|.+.|.+|
T Consensus 10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred cceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence 3467999999996 689999998654432221 3456899999999875
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00031 Score=45.16 Aligned_cols=37 Identities=32% Similarity=0.809 Sum_probs=30.2
Q ss_pred cccccCCCcceE-----------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl-----------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|.|.-. .|..+|++|++.|++
T Consensus 46 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~-------~i~~~C~~C~G~G~v 93 (104)
T 2ctt_A 46 QHCHYCGGSGMETINTGPFVMRSTCRRCGGRGS-------IIISPCVVCRGAGQA 93 (104)
T ss_dssp EECSSSSSSCEEEEEETTEEEEEECSSSSSSSE-------ECSSCCSSSSSCSEE
T ss_pred ccCCCCCCCEEEEEEeCCEEEEEECCcCCCcce-------ECCCcCCCCCCeeEE
Confidence 579999999975 6999999743 345789999999876
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.23 E-value=0.0017 Score=47.62 Aligned_cols=21 Identities=43% Similarity=1.094 Sum_probs=12.8
Q ss_pred cccccCCCcce-----EEcccCCCcc
Q 034326 54 IMCESCNGKGW-----LVCDFCGGQK 74 (98)
Q Consensus 54 i~Ce~CnG~GW-----llCdfCkG~K 74 (98)
+.|..|+|.|. ..|+.|+|.-
T Consensus 39 ~~C~~C~G~G~~~g~~~~C~~C~G~G 64 (248)
T 1nlt_A 39 ILCKECEGRGGKKGAVKKCTSCNGQG 64 (248)
T ss_dssp EECTTTTTCSBSTTTCCCCTTSSSSS
T ss_pred EeCCCCcCccCCCCCCccCCCCCCCc
Confidence 45777776663 4566666654
No 6
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=95.97 E-value=0.0033 Score=46.04 Aligned_cols=39 Identities=33% Similarity=0.763 Sum_probs=30.1
Q ss_pred cccccCCCcceE---------------EcccCCCcccceeccccceeccCCCccccccc
Q 034326 54 IMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 54 i~Ce~CnG~GWl---------------lCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|..|+|.|.+ .|+.|.|.-.-+. ...+|++|++.|++
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~-----~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID-----PKDRCKSCNGKKVE 108 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC-----TTSBCSSSTTSCEE
T ss_pred ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec-----cCCCCcccCCCceE
Confidence 679999999975 4999999743321 15689999999875
No 7
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=94.76 E-value=0.0078 Score=36.46 Aligned_cols=31 Identities=19% Similarity=0.579 Sum_probs=22.8
Q ss_pred hhhccccccCCCcceEEcccCCCcccceeccccceeccCCCcccccccC
Q 034326 50 VEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTPI 98 (98)
Q Consensus 50 ~e~gi~Ce~CnG~GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~ii 98 (98)
++....|+.|+|.|... ...||+|.+.|.++
T Consensus 6 ~~~~~~C~~C~GsG~~~------------------~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 6 DDLEVACPKCERAGEIE------------------GTPCPACSGKGVIL 36 (53)
T ss_dssp HHHEEECTTTTTSSEET------------------TEECTTTTTSSEEE
T ss_pred CCccccCCCCcceeccC------------------CCCCccCCCCccEE
Confidence 34556899999999873 14688888888763
No 8
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=90.72 E-value=0.065 Score=30.22 Aligned_cols=33 Identities=21% Similarity=0.557 Sum_probs=28.9
Q ss_pred EEcccCCCcccceeccccceeccCCCccccccc
Q 034326 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
++|..|+-..|.+.-++..+..+|-.|-+.+.|
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEEEE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCcccc
Confidence 479999999999998888899999999887754
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=90.70 E-value=0.077 Score=32.01 Aligned_cols=27 Identities=30% Similarity=0.709 Sum_probs=17.6
Q ss_pred hhccccccCCCcceE---EcccCCCcccce
Q 034326 51 EVGIMCESCNGKGWL---VCDFCGGQKTNV 77 (98)
Q Consensus 51 e~gi~Ce~CnG~GWl---lCdfCkG~KtNV 77 (98)
+....|..|+|.|=+ .|..|.|+..-.
T Consensus 7 q~~~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 7 DLETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp HHEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred ceeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 355679999999974 355555554433
No 10
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=89.45 E-value=0.1 Score=31.48 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=19.5
Q ss_pred EEcccCCCcccceeccccceeccCCCccccccc
Q 034326 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
..|+.|.|.-. .|...|++|.+.|++
T Consensus 10 ~~C~~C~GsG~-------~i~~~C~~C~G~G~v 35 (53)
T 3lcz_A 10 TTCPNCNGSGR-------EEPEPCPKCLGKGVI 35 (53)
T ss_dssp EECTTTTTSCE-------ETTEECTTTTTSSEE
T ss_pred ccCcCCccccc-------CCCCcCCCCCCcEEE
Confidence 46899988743 344789999998875
No 11
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=82.80 E-value=0.39 Score=34.25 Aligned_cols=34 Identities=21% Similarity=0.671 Sum_probs=29.2
Q ss_pred eEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 64 WllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
+++|..|+..-|.+.-++..++.+|-.|-|.+-|
T Consensus 104 yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 104 YVICPVCGSPDTKIIKRDRFHFLKCEACGAETPI 137 (148)
T ss_dssp HSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCC
T ss_pred EEECCCCCCcCcEEEEeCCEEEEEecCCCCCccc
Confidence 3678899999999998888899999999887654
No 12
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=80.59 E-value=0.42 Score=33.64 Aligned_cols=35 Identities=23% Similarity=0.515 Sum_probs=24.7
Q ss_pred ceEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
-+++|..|+..-|...-++..++.+|-.|-|.+-|
T Consensus 102 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPV 136 (139)
T ss_dssp CCSSCCSSSSSCCCSCSSCSTTTSSCCC-------
T ss_pred HeeECCCCCCcCcEEEEeCCeEEEEecCCCCCCcc
Confidence 35788889999999988888899999999887654
No 13
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=79.43 E-value=0.4 Score=33.70 Aligned_cols=34 Identities=18% Similarity=0.504 Sum_probs=29.1
Q ss_pred eEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 64 WllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
+++|..|+..-|.+.-++..++.+|-.|-|.+-|
T Consensus 102 yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 102 FVICHECNRPDTRIIREGRISLLKCEACGAKAPL 135 (138)
T ss_dssp HHHHTCCSSCSSCCEEETTTTEEECSTTSCCCCS
T ss_pred EEECCCCCCcCcEEEEcCCeEEEEccCCCCCccc
Confidence 3678889999999998888899999999887654
No 14
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=78.79 E-value=0.96 Score=33.32 Aligned_cols=39 Identities=38% Similarity=0.928 Sum_probs=27.5
Q ss_pred hccccccCCC-----------------------cceEEccc--CCCcccceeccccceeccCC--Ccccc
Q 034326 52 VGIMCESCNG-----------------------KGWLVCDF--CGGQKTNVKAQNNRIYRRCP--TCRAV 94 (98)
Q Consensus 52 ~gi~Ce~CnG-----------------------~GWllCdf--CkG~KtNVKse~~RiYRRCP--tCkAv 94 (98)
.|+.|..|+. .||++||. |+-.-.++-- ...||+ .|+++
T Consensus 48 sg~~C~~C~~~~~~~~i~nQl~l~iR~~i~~YY~gwlvCdD~~C~~rTR~lsv----~g~rC~~p~C~G~ 113 (206)
T 3flo_B 48 NGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV----FGKRCLNDGCTGV 113 (206)
T ss_dssp TEEEETTTCCBCCHHHHHHHHHHHHHHHHHHHHHCCEEESCTTTCCEESCCCS----STTBCSSTTCCCB
T ss_pred ccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHhcCCcccCCcCCCcccceeec----cCCCCCCCCCCee
Confidence 5677888987 69999998 9765444433 347785 89653
No 15
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.72 E-value=1.1 Score=26.96 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=25.5
Q ss_pred hhhccccccCCCc----ceEEcccCCCcc----cceeccc-cceeccCCCccc
Q 034326 50 VEVGIMCESCNGK----GWLVCDFCGGQK----TNVKAQN-NRIYRRCPTCRA 93 (98)
Q Consensus 50 ~e~gi~Ce~CnG~----GWllCdfCkG~K----tNVKse~-~RiYRRCPtCkA 93 (98)
++++..|.-|+.. -|+.||.|..-- .++.... ..-.-.||.|+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 3455779889754 499999997331 0111111 112346999975
No 16
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=74.32 E-value=0.8 Score=33.47 Aligned_cols=34 Identities=18% Similarity=0.507 Sum_probs=27.3
Q ss_pred eEEcccCCCcccceec--cccceeccCCCccccccc
Q 034326 64 WLVCDFCGGQKTNVKA--QNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 64 WllCdfCkG~KtNVKs--e~~RiYRRCPtCkAvG~i 97 (98)
+++|..|+-.-|.+.- ++..++.+|-.|-|.+-|
T Consensus 96 YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V 131 (170)
T 2g2k_A 96 FVLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 131 (170)
T ss_dssp HHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCS
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccccCCcccc
Confidence 4567778888888877 778899999999887654
No 17
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.47 E-value=1 Score=32.45 Aligned_cols=34 Identities=18% Similarity=0.507 Sum_probs=26.9
Q ss_pred eEEcccCCCcccceec--cccceeccCCCccccccc
Q 034326 64 WLVCDFCGGQKTNVKA--QNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 64 WllCdfCkG~KtNVKs--e~~RiYRRCPtCkAvG~i 97 (98)
+++|..|+..-|.+.- ++..++.+|-.|-|.+-|
T Consensus 103 YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V 138 (157)
T 2e9h_A 103 FVLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 138 (157)
T ss_dssp TTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccCCCCCCcc
Confidence 4577788888888885 677899999999887643
No 18
>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum}
Probab=66.76 E-value=0.72 Score=27.70 Aligned_cols=22 Identities=36% Similarity=0.887 Sum_probs=16.6
Q ss_pred ceEEcccCCCcccceeccccceeccC
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRC 88 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRC 88 (98)
|.-+|.|||-+|+ ...-.||-|
T Consensus 14 GITlC~wCK~K~~----~~G~ty~~C 35 (39)
T 2hlg_A 14 GITLCQFCKEKTD----QYGLTYRTC 35 (39)
T ss_dssp SSSSCCEEEEEEC----SSCCEEEEE
T ss_pred eEEecccceeccC----CCCccceee
Confidence 6789999998854 355568877
No 19
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=64.08 E-value=3.7 Score=23.07 Aligned_cols=19 Identities=37% Similarity=1.010 Sum_probs=13.2
Q ss_pred cccccCCC--------cceEEcccCCC
Q 034326 54 IMCESCNG--------KGWLVCDFCGG 72 (98)
Q Consensus 54 i~Ce~CnG--------~GWllCdfCkG 72 (98)
+.|..|.+ +|-++|..|+-
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCC
Confidence 45777766 47788888854
No 20
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=62.03 E-value=4.3 Score=25.86 Aligned_cols=14 Identities=43% Similarity=1.106 Sum_probs=8.6
Q ss_pred hccccccCCCcceE
Q 034326 52 VGIMCESCNGKGWL 65 (98)
Q Consensus 52 ~gi~Ce~CnG~GWl 65 (98)
+.|.|..|+.++.+
T Consensus 36 v~I~CnDC~~~s~v 49 (79)
T 2k2d_A 36 VDILCNDCNGRSTV 49 (79)
T ss_dssp EEEEESSSCCEEEE
T ss_pred eEEECCCCCCCccC
Confidence 34677777766543
No 21
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=60.79 E-value=2.7 Score=26.77 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=23.2
Q ss_pred ceEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
-|.+|+||.++.-..+...++-.-.|-+|-+-|=+
T Consensus 36 ~~~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~gGd~ 70 (103)
T 1d0q_A 36 YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGNA 70 (103)
T ss_dssp EEECCSSSCCSSCCEEEETTTTEEEETTTCCEECH
T ss_pred EEEECCCCCCCCCcEEEEcCCCEEEECCCCCCCCH
Confidence 36799999987655555433334568899876643
No 22
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=53.82 E-value=7 Score=24.37 Aligned_cols=8 Identities=25% Similarity=0.273 Sum_probs=4.6
Q ss_pred ceEEcccC
Q 034326 63 GWLVCDFC 70 (98)
Q Consensus 63 GWllCdfC 70 (98)
|+|+|+.|
T Consensus 25 ~~LiC~~c 32 (68)
T 2hf1_A 25 DELICKGD 32 (68)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 55555555
No 23
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=53.32 E-value=7.3 Score=24.26 Aligned_cols=8 Identities=13% Similarity=-0.255 Sum_probs=4.8
Q ss_pred ceEEcccC
Q 034326 63 GWLVCDFC 70 (98)
Q Consensus 63 GWllCdfC 70 (98)
|+|+|+.|
T Consensus 25 ~~LiC~~c 32 (68)
T 2jr6_A 25 QELWSRQA 32 (68)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 56666655
No 24
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=52.52 E-value=6.3 Score=34.95 Aligned_cols=24 Identities=42% Similarity=1.100 Sum_probs=19.6
Q ss_pred ccccccCCCcceE------------EcccCCCcccc
Q 034326 53 GIMCESCNGKGWL------------VCDFCGGQKTN 76 (98)
Q Consensus 53 gi~Ce~CnG~GWl------------lCdfCkG~KtN 76 (98)
|-.||.|.|.|.+ .|+.|.|+..|
T Consensus 753 ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~ 788 (972)
T 2r6f_A 753 GGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYN 788 (972)
T ss_dssp TTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBC
T ss_pred cccccccccccceeeehhcccccccccccccccccc
Confidence 3469999999987 69999998653
No 25
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=52.13 E-value=6.5 Score=33.78 Aligned_cols=23 Identities=43% Similarity=1.183 Sum_probs=19.1
Q ss_pred cccccCCCcceE------------EcccCCCcccc
Q 034326 54 IMCESCNGKGWL------------VCDFCGGQKTN 76 (98)
Q Consensus 54 i~Ce~CnG~GWl------------lCdfCkG~KtN 76 (98)
-.|+.|.|.|.+ .|+.|+|+.-|
T Consensus 639 g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~ 673 (842)
T 2vf7_A 639 GRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYN 673 (842)
T ss_dssp TBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBC
T ss_pred cccccccCCCccchhhhcCCccceecccccCcccc
Confidence 359999999977 49999998754
No 26
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=51.30 E-value=8 Score=24.20 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=6.0
Q ss_pred cceEEcccCC
Q 034326 62 KGWLVCDFCG 71 (98)
Q Consensus 62 ~GWllCdfCk 71 (98)
.|+|+|+.|+
T Consensus 24 ~~~LiC~~cg 33 (70)
T 2js4_A 24 QAELVCNADR 33 (70)
T ss_dssp TTEEEETTTT
T ss_pred CCEEEcCCCC
Confidence 3666666663
No 27
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=51.17 E-value=8.8 Score=24.15 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=21.8
Q ss_pred ceEEcccCCCcccceeccccceeccCCCcc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
|.++|+.|-.++.-+... .+-.|-|-.|.
T Consensus 43 G~v~C~~Cs~~~~~l~~~-~~~~RVC~~C~ 71 (90)
T 3t7l_A 43 GKVFCGVCCNRKCKLQYL-EKEARVCVVCY 71 (90)
T ss_dssp CCEECGGGSCEEEEETTT-TEEEEECHHHH
T ss_pred CCEECCcccCCeeecCCC-CCCCeECHHHH
Confidence 889999999988766432 35567787775
No 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.01 E-value=6.3 Score=21.91 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=7.1
Q ss_pred eccCCCcccc
Q 034326 85 YRRCPTCRAV 94 (98)
Q Consensus 85 YRRCPtCkAv 94 (98)
...||.||+.
T Consensus 37 ~~~CP~Cr~~ 46 (56)
T 1bor_A 37 GMQCPICQAP 46 (56)
T ss_dssp SSSCSSCCSS
T ss_pred CCCCCcCCcE
Confidence 4578888864
No 29
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=50.79 E-value=7 Score=28.48 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=9.4
Q ss_pred ccCCCccccccc
Q 034326 86 RRCPTCRAVSTP 97 (98)
Q Consensus 86 RRCPtCkAvG~i 97 (98)
..||+|...||.
T Consensus 157 ~~Cp~C~~~~f~ 168 (279)
T 1ltl_A 157 SLCSECGGRSFR 168 (279)
T ss_dssp SCCTTTCCCCEE
T ss_pred CcCCCCCCCCcE
Confidence 589999888753
No 30
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=50.64 E-value=8.7 Score=23.99 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=5.4
Q ss_pred ceEEcccCC
Q 034326 63 GWLVCDFCG 71 (98)
Q Consensus 63 GWllCdfCk 71 (98)
|+|+|+.|+
T Consensus 25 ~~LiC~~cg 33 (69)
T 2pk7_A 25 TELISKGAG 33 (69)
T ss_dssp SEEEETTTT
T ss_pred CEEEcCCCC
Confidence 666666663
No 31
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=48.45 E-value=9.4 Score=23.82 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=5.8
Q ss_pred cceEEcccCC
Q 034326 62 KGWLVCDFCG 71 (98)
Q Consensus 62 ~GWllCdfCk 71 (98)
.|.|+|+.|+
T Consensus 26 ~g~LvC~~c~ 35 (67)
T 2jny_A 26 EQLLVNERLN 35 (67)
T ss_dssp TTEEEETTTT
T ss_pred CCEEEcCCCC
Confidence 4566666653
No 32
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=47.77 E-value=11 Score=24.06 Aligned_cols=21 Identities=43% Similarity=1.154 Sum_probs=13.0
Q ss_pred hcccccc--CCCcceE--EcccCCC
Q 034326 52 VGIMCES--CNGKGWL--VCDFCGG 72 (98)
Q Consensus 52 ~gi~Ce~--CnG~GWl--lCdfCkG 72 (98)
.|..|.. |+-+++| .|++|++
T Consensus 13 ~g~~Cs~~~C~~~dflpf~C~~C~~ 37 (75)
T 1wys_A 13 IGQHCQVQHCRQRDFLPFVCDGCSG 37 (75)
T ss_dssp CCCCCSCTTTCCCSCCCEECTTTCC
T ss_pred cCCCcCcccCCCccceeeECcccCc
Confidence 3455655 7777765 5776655
No 33
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=47.51 E-value=9.6 Score=21.13 Aligned_cols=17 Identities=41% Similarity=1.159 Sum_probs=10.5
Q ss_pred cccCCCcc----eEEcccCCC
Q 034326 56 CESCNGKG----WLVCDFCGG 72 (98)
Q Consensus 56 Ce~CnG~G----WllCdfCkG 72 (98)
|.-|...| .|+||.|..
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~ 23 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNK 23 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCC
T ss_pred CCCCCCCCCCCCEEECCCCCh
Confidence 55666555 677777654
No 34
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=45.81 E-value=6.6 Score=26.24 Aligned_cols=20 Identities=25% Similarity=0.846 Sum_probs=12.9
Q ss_pred hhccccccCCCcc-----eEEcccCC
Q 034326 51 EVGIMCESCNGKG-----WLVCDFCG 71 (98)
Q Consensus 51 e~gi~Ce~CnG~G-----WllCdfCk 71 (98)
++++-| -|+..+ |+-||-|.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~ 30 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQ 30 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTC
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCC
Confidence 455667 776543 88888875
No 35
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.82 E-value=12 Score=23.44 Aligned_cols=25 Identities=24% Similarity=0.655 Sum_probs=18.8
Q ss_pred hhhhccccccCCCc------ceEEcccCCCc
Q 034326 49 EVEVGIMCESCNGK------GWLVCDFCGGQ 73 (98)
Q Consensus 49 ~~e~gi~Ce~CnG~------GWllCdfCkG~ 73 (98)
.+|+...|.-|... -.|+||-|..-
T Consensus 12 ~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~ 42 (88)
T 1wev_A 12 AMEMGLACVVCRQMTVASGNQLVECQECHNL 42 (88)
T ss_dssp HHHHCCSCSSSCCCCCCTTCCEEECSSSCCE
T ss_pred cCCCCCcCCCCCCCCCCCCCceEECCCCCCe
Confidence 45567889999865 47899988653
No 36
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=44.62 E-value=9 Score=22.70 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=15.4
Q ss_pred hhhhhccccccCCC-cceEEcccCCC
Q 034326 48 QEVEVGIMCESCNG-KGWLVCDFCGG 72 (98)
Q Consensus 48 Q~~e~gi~Ce~CnG-~GWllCdfCkG 72 (98)
|..+....|.-|.. .-.|+||.|..
T Consensus 3 ~~~~~~~~C~vC~~~g~ll~CD~C~~ 28 (66)
T 1xwh_A 3 MAQKNEDECAVCRDGGELICCDGCPR 28 (66)
T ss_dssp CCCSCCCSBSSSSCCSSCEECSSCCC
T ss_pred cCCCCCCCCccCCCCCCEEEcCCCCh
Confidence 33444566887863 34677887754
No 37
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=44.44 E-value=9.9 Score=33.74 Aligned_cols=23 Identities=39% Similarity=0.999 Sum_probs=18.9
Q ss_pred cccccCCCcceE------------EcccCCCcccc
Q 034326 54 IMCESCNGKGWL------------VCDFCGGQKTN 76 (98)
Q Consensus 54 i~Ce~CnG~GWl------------lCdfCkG~KtN 76 (98)
-.||.|.|.|.+ .|+.|.|+..|
T Consensus 772 grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~ 806 (993)
T 2ygr_A 772 GRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYN 806 (993)
T ss_dssp TBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBC
T ss_pred ccccccccccceeehhhccccceeeehhccccccc
Confidence 459999999976 69999997643
No 38
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=43.58 E-value=7.6 Score=25.47 Aligned_cols=26 Identities=27% Similarity=0.750 Sum_probs=16.2
Q ss_pred EcccCCCcccceeccc--cceeccCCCcc
Q 034326 66 VCDFCGGQKTNVKAQN--NRIYRRCPTCR 92 (98)
Q Consensus 66 lCdfCkG~KtNVKse~--~RiYRRCPtCk 92 (98)
.|+.|... ..++..+ .+.+..|+.|.
T Consensus 5 ~C~~CG~~-~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 5 FCSQCGGE-VILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp BCTTTCCB-CEEECCTTCSSCEEEETTTT
T ss_pred cCchhCCc-cccccccCCCCcceECCCCC
Confidence 47777554 4454433 35577899987
No 39
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=42.63 E-value=12 Score=22.91 Aligned_cols=24 Identities=25% Similarity=0.619 Sum_probs=16.3
Q ss_pred hhhhccccccCCCc------ceEEcccCCC
Q 034326 49 EVEVGIMCESCNGK------GWLVCDFCGG 72 (98)
Q Consensus 49 ~~e~gi~Ce~CnG~------GWllCdfCkG 72 (98)
..+....|.-|... -.|+||-|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~ 41 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNL 41 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Confidence 33455678888755 4788888864
No 40
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=42.48 E-value=11 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=17.2
Q ss_pred hhhhccccccCCCcc------eEEcccCCC
Q 034326 49 EVEVGIMCESCNGKG------WLVCDFCGG 72 (98)
Q Consensus 49 ~~e~gi~Ce~CnG~G------WllCdfCkG 72 (98)
+.+....|.-|+..| .|+||-|..
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~ 50 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNL 50 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCC
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCc
Confidence 334557799998764 788888864
No 41
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=41.93 E-value=13 Score=21.38 Aligned_cols=9 Identities=33% Similarity=1.139 Sum_probs=5.8
Q ss_pred eccCCCccc
Q 034326 85 YRRCPTCRA 93 (98)
Q Consensus 85 YRRCPtCkA 93 (98)
.-.|+.|+.
T Consensus 49 ~~~C~~C~~ 57 (64)
T 1we9_A 49 QYKCPSCSN 57 (64)
T ss_dssp SCCCHHHHT
T ss_pred cEECCCCcC
Confidence 345888864
No 42
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.30 E-value=5.6 Score=29.33 Aligned_cols=36 Identities=31% Similarity=0.750 Sum_probs=0.0
Q ss_pred ccccCCCcceEEcccCCCcccceeccccceeccCCCccc
Q 034326 55 MCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 55 ~Ce~CnG~GWllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
.|-.| |.++|+.|-..+..+....++--|-|-.|-.
T Consensus 393 ~Cr~C---g~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 393 HCHAC---GKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp ---------------------------------------
T ss_pred hcccC---cCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 35555 6799999999988887666777889999864
No 43
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.29 E-value=12 Score=23.73 Aligned_cols=18 Identities=33% Similarity=0.933 Sum_probs=11.2
Q ss_pred cccccCCCcc----eEEcccCC
Q 034326 54 IMCESCNGKG----WLVCDFCG 71 (98)
Q Consensus 54 i~Ce~CnG~G----WllCdfCk 71 (98)
..|.-|...| .|+||.|.
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~C~ 38 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDGCD 38 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTTTC
T ss_pred CCCccCCCcCCCCCEEEcCCCC
Confidence 4566666655 66666654
No 44
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=39.37 E-value=12 Score=26.22 Aligned_cols=26 Identities=31% Similarity=0.769 Sum_probs=18.3
Q ss_pred EEcccCCCcccceeccccceeccCCCccc
Q 034326 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 65 llCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
..|+||. |.+||-...-|. .|+.|..
T Consensus 61 ytCPfCG--k~~vKR~avGIW-~C~~Cgk 86 (116)
T 3cc2_Z 61 HACPNCG--EDRVDRQGTGIW-QCSYCDY 86 (116)
T ss_dssp EECSSSC--CEEEEEEETTEE-EETTTCC
T ss_pred CcCCCCC--CceeEecCceeE-ECCCCCC
Confidence 4688995 457777766555 6888864
No 45
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=37.97 E-value=17 Score=21.65 Aligned_cols=18 Identities=33% Similarity=1.021 Sum_probs=12.4
Q ss_pred cccccCCCc-----ceEEcc--cCC
Q 034326 54 IMCESCNGK-----GWLVCD--FCG 71 (98)
Q Consensus 54 i~Ce~CnG~-----GWllCd--fCk 71 (98)
..|..|.|. |+|+|. .|+
T Consensus 11 L~CP~c~~~L~~~~~~L~C~~~~c~ 35 (56)
T 2kpi_A 11 LACPACHAPLEERDAELICTGQDCG 35 (56)
T ss_dssp CCCSSSCSCEEEETTEEEECSSSCC
T ss_pred eeCCCCCCcceecCCEEEcCCcCCC
Confidence 346666665 888888 774
No 46
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=36.76 E-value=9.7 Score=33.64 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=25.5
Q ss_pred cccccCCCcceEEcccCCCccccee---ccccceeccCC
Q 034326 54 IMCESCNGKGWLVCDFCGGQKTNVK---AQNNRIYRRCP 89 (98)
Q Consensus 54 i~Ce~CnG~GWllCdfCkG~KtNVK---se~~RiYRRCP 89 (98)
-.|+.|.-..-..|+||+..+...- ....-++|||+
T Consensus 56 ~~c~~c~~~~cg~c~~c~~~~k~gg~~~~~q~c~~r~c~ 94 (1002)
T 3swr_A 56 GVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCP 94 (1002)
T ss_dssp TTSTTTSSCCCSCSTTGGGSSTTSSCTTCCCCCGGGCCT
T ss_pred CCCcCccCCCCCCCcccccCCccCCCccccHHHHhccCc
Confidence 3478887778889999998765552 23345788885
No 47
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.95 E-value=18 Score=21.56 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=7.2
Q ss_pred eccCCCccccc
Q 034326 85 YRRCPTCRAVS 95 (98)
Q Consensus 85 YRRCPtCkAvG 95 (98)
.-.||.|+...
T Consensus 57 ~~~C~~C~~~~ 67 (72)
T 1wee_A 57 KFLCFRCIELS 67 (72)
T ss_dssp CCCCHHHHHHC
T ss_pred cEECCCccCCC
Confidence 44688887643
No 48
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=34.14 E-value=11 Score=28.74 Aligned_cols=18 Identities=39% Similarity=1.138 Sum_probs=12.3
Q ss_pred cccccCCC----------cceEEcccCC
Q 034326 54 IMCESCNG----------KGWLVCDFCG 71 (98)
Q Consensus 54 i~Ce~CnG----------~GWllCdfCk 71 (98)
..|.+|++ .|=++|..|+
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~CG 49 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALCG 49 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTTC
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCCC
Confidence 45888875 4777777774
No 49
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=32.47 E-value=9.6 Score=21.49 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=15.5
Q ss_pred eEEcccCCCcccceeccccceeccCCCcccc
Q 034326 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 64 WllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
-..|..|-.+-.+-...+..-..+||.||..
T Consensus 32 H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 32 HSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62 (79)
T ss_dssp CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC
T ss_pred CHHHHHHHHHHHHhcccCCCCCCcCCCCCCc
Confidence 3456556544322211112335689999864
No 50
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=31.75 E-value=23 Score=21.39 Aligned_cols=43 Identities=21% Similarity=0.438 Sum_probs=22.6
Q ss_pred hccccccCCCcc-eEEcccCCCccc------ceeccccceeccCCCccccc
Q 034326 52 VGIMCESCNGKG-WLVCDFCGGQKT------NVKAQNNRIYRRCPTCRAVS 95 (98)
Q Consensus 52 ~gi~Ce~CnG~G-WllCdfCkG~Kt------NVKse~~RiYRRCPtCkAvG 95 (98)
.+..|.-|+..| .|+||.|..--- -++..- +=--.|+.|++..
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCC-CCCEECccccCCC
Confidence 345577776444 567888864310 011110 1124699998653
No 51
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.73 E-value=16 Score=22.99 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=22.7
Q ss_pred ceEEcccCCCcccceeccccceeccCCCccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
|.++|+.|-.++.-+...+.+-.|-|-.|..
T Consensus 32 G~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~ 62 (88)
T 1wfk_A 32 GRAFCNGCLSFSALVPRAGNTQQKVCKQCHT 62 (88)
T ss_dssp CCEEETTTSCEEEEETTTTSEEEEECHHHHH
T ss_pred CCEEChhHcCCceeccccCCCcCEECHHHHH
Confidence 7899999988876665555566777877753
No 52
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=31.66 E-value=13 Score=28.27 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=20.7
Q ss_pred eEEcccCCCcccceeccccceeccCCCccccccc
Q 034326 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVSTP 97 (98)
Q Consensus 64 WllCdfCkG~KtNVKse~~RiYRRCPtCkAvG~i 97 (98)
|.+|+||.++.-......++=.-.|-+|-+.|-+
T Consensus 34 ~~~CPfh~ektpSf~V~~~k~~~~CFgCg~gGd~ 67 (407)
T 2au3_A 34 RTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDA 67 (407)
T ss_dssp EECCSSSCCSSCCEEEETTTTEEEETTTCCEECH
T ss_pred EeeCcCCCCCCCeEEEECCCCEEEECCCCCCCCH
Confidence 4689999877544433322223368899776643
No 53
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=30.52 E-value=19 Score=23.11 Aligned_cols=24 Identities=29% Similarity=0.706 Sum_probs=15.3
Q ss_pred EcccCCCcccceeccccceeccCCCcc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
.|+||. |+.||-...-| -.|..|.
T Consensus 29 ~C~fCg--k~~vkR~a~GI-W~C~~C~ 52 (73)
T 1ffk_W 29 KCPVCG--FPKLKRASTSI-WVCGHCG 52 (73)
T ss_pred cCCCCC--CceeEEEEeEE-EECCCCC
Confidence 578885 55777665544 3577775
No 54
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.30 E-value=27 Score=21.90 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=17.3
Q ss_pred EcccCCCcccceeccccceeccCCCccccc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCRAVS 95 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCkAvG 95 (98)
.|..|+.+ |+-++|.|..|.|..
T Consensus 13 kC~~C~k~-------N~Pl~ryC~rCwaLR 35 (53)
T 2cr8_A 13 QCTECKKF-------NSPSKRYCFRCWALR 35 (53)
T ss_dssp ECSSSCCE-------ECSSCCBCTTTCCBC
T ss_pred eccccccc-------CCCccchhHHHHHhh
Confidence 57778733 566899999998863
No 55
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.94 E-value=39 Score=21.71 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=13.9
Q ss_pred cceEEcccCCCcccceeccccceec-cCCCcccc
Q 034326 62 KGWLVCDFCGGQKTNVKAQNNRIYR-RCPTCRAV 94 (98)
Q Consensus 62 ~GWllCdfCkG~KtNVKse~~RiYR-RCPtCkAv 94 (98)
.+...|.-|+-.-. + ...+. +||.|...
T Consensus 71 p~~~~C~~CG~~~e-~----~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 71 KVELECKDCSHVFK-P----NALDYGVCEKCHSK 99 (119)
T ss_dssp CCEEECSSSSCEEC-S----CCSTTCCCSSSSSC
T ss_pred cceEEcCCCCCEEe-C----CCCCCCcCccccCC
Confidence 34555666643311 1 22344 78888654
No 56
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=25.45 E-value=20 Score=23.95 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=16.3
Q ss_pred ccCCCcccceeccc--cceeccCCCccc
Q 034326 68 DFCGGQKTNVKAQN--NRIYRRCPTCRA 93 (98)
Q Consensus 68 dfCkG~KtNVKse~--~RiYRRCPtCkA 93 (98)
--||-....-|..| -|||.-|-||-.
T Consensus 26 vkckvaprdwkvknkhlriynmcktcfn 53 (81)
T 2p09_A 26 VKCKVAPRDWKVKNKHLRIYNMCKTCFN 53 (81)
T ss_dssp TTTSSSCCCEEEETTEEEEESSCHHHHH
T ss_pred eeeeecCccceeccceeeHHHHHHHHhc
Confidence 34444444444444 499999999954
No 57
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=24.61 E-value=14 Score=21.82 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=11.1
Q ss_pred EcccCCCcccceec
Q 034326 66 VCDFCGGQKTNVKA 79 (98)
Q Consensus 66 lCdfCkG~KtNVKs 79 (98)
-|.|||.+-..||-
T Consensus 11 hcrfckkkysdvkn 24 (37)
T 2elu_A 11 HCRFCKKKYSDVKN 24 (37)
T ss_dssp EETTTTEECSSHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999988777763
No 58
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.54 E-value=33 Score=19.47 Aligned_cols=21 Identities=33% Similarity=0.839 Sum_probs=12.8
Q ss_pred hccccccCCCcc-eEEcccCCC
Q 034326 52 VGIMCESCNGKG-WLVCDFCGG 72 (98)
Q Consensus 52 ~gi~Ce~CnG~G-WllCdfCkG 72 (98)
....|.-|...| +|+||.|..
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~ 29 (56)
T 2yql_A 8 HEDFCSVCRKSGQLLMCDTCSR 29 (56)
T ss_dssp SCCSCSSSCCSSCCEECSSSSC
T ss_pred CCCCCccCCCCCeEEEcCCCCc
Confidence 345577776444 667777764
No 59
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.39 E-value=14 Score=20.60 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=16.9
Q ss_pred ceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
|-..|..|-.+-.+ .+.-..+||.||+.
T Consensus 39 gH~fC~~Ci~~~~~----~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 39 GHNFCLKCITQIGE----TSCGFFKCPLCKTS 66 (73)
T ss_dssp CCEEEHHHHHHHCS----SSCSCCCCSSSCCC
T ss_pred CChhhHHHHHHHHH----cCCCCCCCCCCCCc
Confidence 45577777654322 11235689999974
No 60
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=24.20 E-value=24 Score=21.70 Aligned_cols=31 Identities=19% Similarity=0.628 Sum_probs=23.0
Q ss_pred ceEEcccCCCcccceeccc-cceeccCCCccc
Q 034326 63 GWLVCDFCGGQKTNVKAQN-NRIYRRCPTCRA 93 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~-~RiYRRCPtCkA 93 (98)
|.++|+.|-.++.-+...+ ++-.|-|-.|..
T Consensus 44 G~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~ 75 (84)
T 1z2q_A 44 GYVLCGDCSRHRAAIPMRGITEPERVCDACYL 75 (84)
T ss_dssp CCEECTGGGCCEEEETTTTEEEEEECCHHHHH
T ss_pred CcEEChHHhCCeEeccCCCCCCCCEECHHHHH
Confidence 7899999988876665544 566788888753
No 61
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=23.44 E-value=28 Score=21.19 Aligned_cols=27 Identities=22% Similarity=0.667 Sum_probs=15.0
Q ss_pred CcceEEcccCCCcccceeccccceeccCCCccc
Q 034326 61 GKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (98)
Q Consensus 61 G~GWllCdfCkG~KtNVKse~~RiYRRCPtCkA 93 (98)
|.|=+.||+|.|.|. ++ --.+|-+|.+
T Consensus 27 ~~~~v~C~~C~~~~~-~~-----A~ksCl~C~~ 53 (78)
T 2ffw_A 27 SAEKVLCQFCDQDPA-QD-----AVKTCVTCEV 53 (78)
T ss_dssp SSCCCBCSSCCSSSC-CB-----CCEEETTTTE
T ss_pred CCCCccCCcCCCCCC-CC-----CeeEccCccc
Confidence 334467888887541 12 3345666654
No 62
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=23.15 E-value=37 Score=21.75 Aligned_cols=24 Identities=38% Similarity=0.980 Sum_probs=14.4
Q ss_pred EcccCCCcccceeccccceeccCCCcc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
.|.||.. +.||-.+.-|. .|..|.
T Consensus 28 ~C~fCgk--~~vkR~a~GIW-~C~~C~ 51 (72)
T 3jyw_9 28 DCSFCGK--KTVKRGAAGIW-TCSCCK 51 (72)
T ss_dssp CCSSCCS--SCBSBCSSSCB-CCSSSC
T ss_pred cCCCCCC--ceeEecCCCeE-ECCCCC
Confidence 5788873 45666555443 466664
No 63
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=21.88 E-value=29 Score=18.24 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=7.3
Q ss_pred ccCCCcccc
Q 034326 86 RRCPTCRAV 94 (98)
Q Consensus 86 RRCPtCkAv 94 (98)
..||.||+.
T Consensus 44 ~~CP~Cr~~ 52 (55)
T 1iym_A 44 STCPLCRLT 52 (55)
T ss_dssp CSCSSSCCC
T ss_pred CcCcCCCCE
Confidence 479999975
No 64
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=21.22 E-value=29 Score=18.14 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=14.5
Q ss_pred ceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
|-..|..|-.+-... ..+||.||+.
T Consensus 28 gH~fc~~Ci~~~~~~-------~~~CP~Cr~~ 52 (55)
T 2ecm_A 28 GHLLHRTCYEEMLKE-------GYRCPLCSGP 52 (55)
T ss_dssp SCEEETTHHHHHHHH-------TCCCTTSCCS
T ss_pred CCcccHHHHHHHHHc-------CCcCCCCCCc
Confidence 345666665442211 1689999874
No 65
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=21.09 E-value=76 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=9.0
Q ss_pred ccCccccccchhhhhccccccC
Q 034326 38 SKPALCAPVKQEVEVGIMCESC 59 (98)
Q Consensus 38 ~kp~~C~p~~Q~~e~gi~Ce~C 59 (98)
.+++.|.-.+ +++....|+.|
T Consensus 11 ~~~~~c~~~~-~~~~~~~C~~C 31 (155)
T 2rpc_A 11 KQELSCKWID-EAQLSRPKKSC 31 (155)
T ss_dssp CCCBCCCBCC-TTCCSSSCCCC
T ss_pred CCCeeEEeec-hhhcccccccC
Confidence 4455554433 23333444444
No 66
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=20.95 E-value=52 Score=20.66 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=5.0
Q ss_pred CCCcccccC
Q 034326 32 PSHSLKSKP 40 (98)
Q Consensus 32 psh~~f~kp 40 (98)
|.|++.+.+
T Consensus 36 p~H~L~L~~ 44 (89)
T 1v5n_A 36 EEHELELTR 44 (89)
T ss_dssp TTSCEEEEC
T ss_pred CCCccEEee
Confidence 456666554
No 67
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.81 E-value=32 Score=21.30 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=6.5
Q ss_pred ccCCCcccc
Q 034326 86 RRCPTCRAV 94 (98)
Q Consensus 86 RRCPtCkAv 94 (98)
..||.||+.
T Consensus 56 ~~CP~Cr~~ 64 (117)
T 1jm7_B 56 TGCPVCYTP 64 (117)
T ss_dssp TBCSSSCCB
T ss_pred CCCcCCCCc
Confidence 568888764
No 68
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=20.70 E-value=40 Score=22.62 Aligned_cols=24 Identities=42% Similarity=1.039 Sum_probs=13.1
Q ss_pred EcccCCCcccceeccccceeccCCCcc
Q 034326 66 VCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (98)
Q Consensus 66 lCdfCkG~KtNVKse~~RiYRRCPtCk 92 (98)
.|.||. |+.||-.+.-|. .|.+|.
T Consensus 38 ~CpfCg--k~~vkR~a~GIW-~C~~C~ 61 (92)
T 3izc_m 38 DCSFCG--KKTVKRGAAGIW-TCSCCK 61 (92)
T ss_dssp CCSSSC--SSCCEEEETTEE-ECTTTC
T ss_pred cCCCCC--CceeeecccceE-EcCCCC
Confidence 467776 334665554443 366663
No 69
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=20.67 E-value=45 Score=21.92 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=19.1
Q ss_pred CcceEEcccCCCcccceecccc--ceeccCCCccc
Q 034326 61 GKGWLVCDFCGGQKTNVKAQNN--RIYRRCPTCRA 93 (98)
Q Consensus 61 G~GWllCdfCkG~KtNVKse~~--RiYRRCPtCkA 93 (98)
+.-|..|. |+|.- .|-.+.- .+.-+|++|.-
T Consensus 109 ~~f~~~Cr-CG~~f-~i~~~~l~~~~~v~C~sCSl 141 (155)
T 2l6l_A 109 HSFYLSCR-CGGKY-SVSKDEAEEVSLISCDTCSL 141 (155)
T ss_dssp TEEEEECS-SSCEE-EEETTHHHHCCEEECSSSSC
T ss_pred cEEEEcCC-CCCeE-EecHHHhCCCCEEECCCCce
Confidence 34677886 88763 2333321 26789999963
No 70
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=20.62 E-value=45 Score=19.13 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=11.7
Q ss_pred hhccccccCCCcceEEcccCC
Q 034326 51 EVGIMCESCNGKGWLVCDFCG 71 (98)
Q Consensus 51 e~gi~Ce~CnG~GWllCdfCk 71 (98)
+....|..|.-.....|.-|+
T Consensus 13 ~~~~~C~~C~~~~~~~Cs~C~ 33 (60)
T 2dj8_A 13 DSSESCWNCGRKASETCSGCN 33 (60)
T ss_dssp CCSCCCSSSCSCCCEECTTTS
T ss_pred CCCcccccCCCCCcccCCCCC
Confidence 445567777655545554444
No 71
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=20.33 E-value=32 Score=18.84 Aligned_cols=25 Identities=32% Similarity=0.735 Sum_probs=16.1
Q ss_pred ceEEcccCCCcccceeccccceeccCCCcccc
Q 034326 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (98)
Q Consensus 63 GWllCdfCkG~KtNVKse~~RiYRRCPtCkAv 94 (98)
|-..|..|-.+-... ..+||.||+.
T Consensus 36 gH~fc~~Ci~~~~~~-------~~~CP~Cr~~ 60 (71)
T 3ng2_A 36 GHVFCSQCLRDSLKN-------ANTCPTCRKK 60 (71)
T ss_dssp SCEEEHHHHHHHHHH-------CSBCTTTCCB
T ss_pred CChHhHHHHHHHHHc-------CCCCCCCCCc
Confidence 557777776553221 1489999975
Done!