BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034327
         (98 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P17710|HXK1_MOUSE Hexokinase-1 OS=Mus musculus GN=Hk1 PE=1 SV=3
          Length = 974

 Score = 33.5 bits (75), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 3  ETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVP 50
          ET PVP R+S    P  E R+P   +C+     + Q C  G      P
Sbjct: 20 ETSPVPERQSGSENPASEDRRPLEKQCSHHLYTMGQNCQRGQAVDVEP 67


>sp|Q07UP1|MNMG_RHOP5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           OS=Rhodopseudomonas palustris (strain BisA53) GN=mnmG
           PE=3 SV=1
          Length = 622

 Score = 29.3 bits (64), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 16/21 (76%)

Query: 55  LFWQCMRSKPGEEPTEPFTYL 75
           ++W+ +  +PG++P EPF+ L
Sbjct: 208 IYWEAVEMQPGDDPPEPFSVL 228


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.138    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,040,797
Number of Sequences: 539616
Number of extensions: 1880124
Number of successful extensions: 2945
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2943
Number of HSP's gapped (non-prelim): 2
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)