Query 034327
Match_columns 98
No_of_seqs 22 out of 24
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 21:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ytt_A Zinc finger protein 473 33.4 26 0.00089 17.4 1.9 17 15-31 1-17 (46)
2 2akf_A Coronin-1A; coiled coil 28.9 25 0.00085 20.1 1.4 10 30-39 22-31 (32)
3 3lio_A Iron superoxide dismuta 28.6 20 0.0007 26.1 1.2 16 54-69 74-89 (192)
4 2elv_A Zinc finger protein 406 28.0 21 0.00071 16.7 0.9 13 19-31 2-14 (36)
5 2epr_A POZ-, at HOOK-, and zin 27.4 25 0.00086 17.8 1.2 40 15-68 1-40 (48)
6 1p7a_A BF3, BKLF, kruppel-like 25.9 27 0.00091 16.3 1.0 12 20-31 5-16 (37)
7 2eln_A Zinc finger protein 406 25.1 25 0.00084 18.6 0.9 12 19-30 2-13 (38)
8 3tqj_A Superoxide dismutase [F 24.9 26 0.0009 26.0 1.3 16 54-69 75-90 (210)
9 2eom_A ZFP-95, zinc finger pro 24.7 44 0.0015 16.5 1.8 14 18-31 4-17 (46)
10 3js4_A Superoxide dismutase; n 24.1 27 0.00093 26.1 1.2 16 54-69 102-117 (227)
11 2epp_A POZ-, at HOOK-, and zin 23.8 43 0.0015 19.8 1.9 38 17-68 4-41 (66)
12 2eon_A ZFP-95, zinc finger pro 23.8 50 0.0017 16.3 1.9 37 18-68 4-40 (46)
13 2eps_A POZ-, at HOOK-, and zin 23.7 35 0.0012 17.8 1.3 17 15-31 1-17 (54)
14 2ep0_A Zinc finger protein 28 23.5 37 0.0013 16.7 1.3 15 17-31 3-17 (46)
15 2gpc_A Iron superoxide dismuta 23.5 30 0.001 25.2 1.3 16 54-69 76-91 (194)
16 1fv5_A First zinc finger of U- 23.2 29 0.001 18.3 1.0 12 20-31 2-13 (36)
17 2elr_A Zinc finger protein 406 22.9 41 0.0014 15.4 1.4 12 20-31 3-14 (36)
18 1my6_A Iron (III) superoxide d 22.9 31 0.0011 25.2 1.3 16 54-69 80-95 (199)
19 2yth_A Zinc finger protein 224 22.8 28 0.00097 17.2 0.8 10 21-30 35-44 (46)
20 2elq_A Zinc finger protein 406 22.8 30 0.001 16.0 0.9 12 20-31 3-14 (36)
21 1uer_A SOD, superoxide dismuta 22.6 32 0.0011 25.0 1.3 16 54-69 75-90 (191)
22 2nyb_A Superoxide dismutase [F 22.1 33 0.0011 24.9 1.3 16 54-69 74-89 (192)
23 3h1s_A Superoxide dismutase; S 22.0 31 0.0011 25.1 1.2 15 54-69 78-92 (195)
24 1pl4_A Superoxide dismutase [M 22.0 33 0.0011 24.9 1.3 15 55-69 76-90 (198)
25 2enh_A Zinc finger protein 28 21.5 57 0.002 16.0 1.9 37 18-68 4-40 (46)
26 1bhi_A CRE-BP1, ATF-2; CRE bin 21.3 27 0.00091 16.5 0.5 9 22-30 2-10 (38)
27 2ytp_A Zinc finger protein 484 21.3 34 0.0012 16.9 0.9 10 21-30 35-44 (46)
28 1ids_A Iron superoxide dismuta 21.1 40 0.0014 24.8 1.6 15 55-69 78-92 (207)
29 2epu_A Zinc finger protein 32; 21.1 40 0.0014 16.6 1.2 15 17-31 3-17 (45)
30 1va1_A Transcription factor SP 20.9 31 0.001 16.5 0.7 11 20-30 2-12 (37)
31 2elm_A Zinc finger protein 406 20.8 25 0.00087 16.8 0.3 12 20-31 3-14 (37)
32 1dt0_A Superoxide dismutase; p 20.7 36 0.0012 24.9 1.3 16 54-69 74-89 (197)
33 1mng_A Manganese superoxide di 20.7 43 0.0015 24.5 1.7 16 54-69 84-99 (203)
34 3iuf_A Zinc finger protein UBI 20.5 28 0.00097 18.0 0.5 35 21-69 2-37 (48)
35 2elo_A Zinc finger protein 406 20.1 32 0.0011 16.0 0.6 12 20-31 3-14 (37)
No 1
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.37 E-value=26 Score=17.39 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCcCccch
Q 034327 15 GTPEGEHRQPKAHRCND 31 (98)
Q Consensus 15 g~~~~~~~~~rpHRCND 31 (98)
|-+...|.+.++|.|+.
T Consensus 1 g~~~~~h~~~k~~~C~~ 17 (46)
T 2ytt_A 1 GSSGSSGEGEKPYQCSE 17 (46)
T ss_dssp CCCSSSCSCCCTTCCSS
T ss_pred CCCCCCCCCCCCeeCCC
Confidence 34556778889999973
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=28.89 E-value=25 Score=20.11 Aligned_cols=10 Identities=50% Similarity=0.657 Sum_probs=8.3
Q ss_pred chhHHHHHHH
Q 034327 30 NDRAEDVIQA 39 (98)
Q Consensus 30 NDR~eDvlqa 39 (98)
-||+||-+||
T Consensus 22 ~drle~tvqa 31 (32)
T 2akf_A 22 LDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 3899999886
No 3
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A
Probab=28.57 E-value=20 Score=26.07 Aligned_cols=16 Identities=25% Similarity=0.839 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||.||....|.+|.
T Consensus 74 ~~fw~~L~p~ggg~P~ 89 (192)
T 3lio_A 74 TFYWNSLSPNGGGAPT 89 (192)
T ss_dssp HHHHHTBCTTCCSSCC
T ss_pred HHHHHHcCCCCCCCCC
Confidence 4799999887776664
No 4
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.04 E-value=21 Score=16.66 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=9.3
Q ss_pred CCCCCCCcCccch
Q 034327 19 GEHRQPKAHRCND 31 (98)
Q Consensus 19 ~~~~~~rpHRCND 31 (98)
..+.+.+||.|+.
T Consensus 2 ~~h~~~k~~~C~~ 14 (36)
T 2elv_A 2 SSGSSGLLYDCHI 14 (36)
T ss_dssp CCSCCCCCEECSS
T ss_pred CCCCCCCCeECCC
Confidence 3566778998863
No 5
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.44 E-value=25 Score=17.79 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCcCccchhHHHHHHHHhcCCCCcccCchHHHHHHHHhcCCCCCC
Q 034327 15 GTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEP 68 (98)
Q Consensus 15 g~~~~~~~~~rpHRCNDR~eDvlqa~fegnp~~tvp~~fkLfwrCmRSk~GeEP 68 (98)
|-+...+...++|.|+. .|-.|. ....|-+=++...|+.|
T Consensus 1 g~~~~~~~~~k~~~C~~----------C~k~f~----~~~~L~~H~~~H~~~k~ 40 (48)
T 2epr_A 1 GSSGSSGRTRKQVACEI----------CGKIFR----DVYHLNRHKLSHSGEKP 40 (48)
T ss_dssp CCCCSCCCCCCSEEETT----------TTEEES----SHHHHHHHGGGSCSCCC
T ss_pred CCCCCCCCCCcCeeCCC----------CCcccC----CHHHHHHHHHhcCCCCC
Confidence 34556778889999973 233332 23344555677766654
No 6
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.87 E-value=27 Score=16.28 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=9.2
Q ss_pred CCCCCCcCccch
Q 034327 20 EHRQPKAHRCND 31 (98)
Q Consensus 20 ~~~~~rpHRCND 31 (98)
.+.+.+|+.|+.
T Consensus 5 ~h~~~k~~~C~~ 16 (37)
T 1p7a_A 5 GSTGIKPFQCPD 16 (37)
T ss_dssp TTCCSSSBCCTT
T ss_pred cCCCCCCccCCC
Confidence 466789999974
No 7
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.08 E-value=25 Score=18.61 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=9.0
Q ss_pred CCCCCCCcCccc
Q 034327 19 GEHRQPKAHRCN 30 (98)
Q Consensus 19 ~~~~~~rpHRCN 30 (98)
+.+.+.|||.|+
T Consensus 2 ~~~~gekp~~C~ 13 (38)
T 2eln_A 2 SSGSSGILLKCP 13 (38)
T ss_dssp CCSSCCCCEECS
T ss_pred CCCCCCCCCCCC
Confidence 446678899996
No 8
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii}
Probab=24.94 E-value=26 Score=26.03 Aligned_cols=16 Identities=31% Similarity=1.147 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||+||....|.+|.
T Consensus 75 ~~Fw~~L~P~ggg~P~ 90 (210)
T 3tqj_A 75 TFYWHCMSPDGGGDPS 90 (210)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHhcCCCCCCCCC
Confidence 4799999987777774
No 9
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.73 E-value=44 Score=16.54 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=10.4
Q ss_pred CCCCCCCCcCccch
Q 034327 18 EGEHRQPKAHRCND 31 (98)
Q Consensus 18 ~~~~~~~rpHRCND 31 (98)
...|.+.++|.|+.
T Consensus 4 ~~~h~~~k~~~C~~ 17 (46)
T 2eom_A 4 GSSGHGERGHRCSD 17 (46)
T ss_dssp CCCCCCCSSCCCSS
T ss_pred CCCCCCCCCcCCCC
Confidence 44577889999974
No 10
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum}
Probab=24.11 E-value=27 Score=26.13 Aligned_cols=16 Identities=31% Similarity=0.949 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||.||....|.+|.
T Consensus 102 s~FW~~L~P~ggg~P~ 117 (227)
T 3js4_A 102 DFYWQSMKPNGGGNPP 117 (227)
T ss_dssp HHHHHTBCTTCCSSCC
T ss_pred HHHHHhcCCCCCCCCC
Confidence 5799999987777764
No 11
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.83 E-value=43 Score=19.85 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=25.6
Q ss_pred CCCCCCCCCcCccchhHHHHHHHHhcCCCCcccCchHHHHHHHHhcCCCCCC
Q 034327 17 PEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEP 68 (98)
Q Consensus 17 ~~~~~~~~rpHRCNDR~eDvlqa~fegnp~~tvp~~fkLfwrCmRSk~GeEP 68 (98)
..+.+++.|||.|+. +|-.|.. ...|.+=+|...|++.
T Consensus 4 ~~~~~~~ekpy~C~~----------CgK~F~~----~s~L~~H~r~Htg~~~ 41 (66)
T 2epp_A 4 GSSGLREAGILPCGL----------CGKVFTD----ANRLRQHEAQHGVTSL 41 (66)
T ss_dssp CSCSCCCCCCCCCTT----------TCCCCSC----HHHHHHHHHHHTTTSC
T ss_pred CCCCCCCccCcCCCC----------CCCccCC----HHHHHhhhhhhCCCcc
Confidence 346688999999984 5666643 3345566777777653
No 12
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.75 E-value=50 Score=16.35 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCCCCCCCcCccchhHHHHHHHHhcCCCCcccCchHHHHHHHHhcCCCCCC
Q 034327 18 EGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEP 68 (98)
Q Consensus 18 ~~~~~~~rpHRCNDR~eDvlqa~fegnp~~tvp~~fkLfwrCmRSk~GeEP 68 (98)
...|.+.|||.|+. .|-.|.. ...|.+=++...|+.|
T Consensus 4 ~~~H~~~k~~~C~~----------C~k~f~~----~~~L~~H~~~H~~~k~ 40 (46)
T 2eon_A 4 GSSGTGEKPYKCQV----------CGKAFRV----SSHLVQHHSVHSGERP 40 (46)
T ss_dssp SSSCSSCCSCBCSS----------SCCBCSS----HHHHHHHTTTTTSCCS
T ss_pred CCCCCCCcccCCCC----------CCcccCc----HHHHHHHHHhcCCCCC
Confidence 34577889999973 4555533 2344455666666554
No 13
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.75 E-value=35 Score=17.80 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCcCccch
Q 034327 15 GTPEGEHRQPKAHRCND 31 (98)
Q Consensus 15 g~~~~~~~~~rpHRCND 31 (98)
|-+...+.+.|||.|+.
T Consensus 1 g~~~~~~~~~k~~~C~~ 17 (54)
T 2eps_A 1 GSSGSSGSVGKPYICQS 17 (54)
T ss_dssp CCCCCCCCSSCCEECSS
T ss_pred CCCCCCCCCCCCeECCC
Confidence 44566788889999974
No 14
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.48 E-value=37 Score=16.73 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=10.7
Q ss_pred CCCCCCCCCcCccch
Q 034327 17 PEGEHRQPKAHRCND 31 (98)
Q Consensus 17 ~~~~~~~~rpHRCND 31 (98)
....|.+.++|.|+.
T Consensus 3 ~~~~h~~~~~~~C~~ 17 (46)
T 2ep0_A 3 SGSSGTGEKPYKCDV 17 (46)
T ss_dssp CCCSSTTCCSEECSS
T ss_pred CCCCCCCCCCeeCcc
Confidence 445677888898863
No 15
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A
Probab=23.47 E-value=30 Score=25.19 Aligned_cols=16 Identities=38% Similarity=0.924 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||.||.-..|.+|.
T Consensus 76 ~~fw~~L~P~gg~~P~ 91 (194)
T 2gpc_A 76 TFYWESMCPNGGGEPT 91 (194)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHhcCCCCCCCCC
Confidence 5799999776666664
No 16
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=23.21 E-value=29 Score=18.35 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=9.1
Q ss_pred CCCCCCcCccch
Q 034327 20 EHRQPKAHRCND 31 (98)
Q Consensus 20 ~~~~~rpHRCND 31 (98)
...+.|||.|+.
T Consensus 2 ~~~gekp~~C~~ 13 (36)
T 1fv5_A 2 SLLKPARFMCLP 13 (36)
T ss_dssp CSSSCCCCEETT
T ss_pred CCCCccCeECCC
Confidence 456788999874
No 17
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.94 E-value=41 Score=15.38 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=8.7
Q ss_pred CCCCCCcCccch
Q 034327 20 EHRQPKAHRCND 31 (98)
Q Consensus 20 ~~~~~rpHRCND 31 (98)
.+.+.++|.|+.
T Consensus 3 ~h~~~~~~~C~~ 14 (36)
T 2elr_A 3 SGSSGKTHLCDM 14 (36)
T ss_dssp CCCCCSSCBCTT
T ss_pred CCCCCCCeecCc
Confidence 456778899973
No 18
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1
Probab=22.91 E-value=31 Score=25.19 Aligned_cols=16 Identities=31% Similarity=0.860 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||.||.-..|.+|.
T Consensus 80 ~~fw~~L~P~gg~~P~ 95 (199)
T 1my6_A 80 TFFWNSLKPGGGGVPT 95 (199)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHHhccCCCCCCC
Confidence 5799999776666664
No 19
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.81 E-value=28 Score=17.24 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.5
Q ss_pred CCCCCcCccc
Q 034327 21 HRQPKAHRCN 30 (98)
Q Consensus 21 ~~~~rpHRCN 30 (98)
|.+.+||.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2yth_A 35 HTGEKPSGPS 44 (46)
T ss_dssp GTTCCCSSCC
T ss_pred cCCCCCCCCC
Confidence 3445666665
No 20
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.79 E-value=30 Score=16.03 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=9.1
Q ss_pred CCCCCCcCccch
Q 034327 20 EHRQPKAHRCND 31 (98)
Q Consensus 20 ~~~~~rpHRCND 31 (98)
.+.+.+||.|+.
T Consensus 3 ~h~~~k~~~C~~ 14 (36)
T 2elq_A 3 SGSSGKPFKCSL 14 (36)
T ss_dssp SSCCCCSEECSS
T ss_pred CCCCCCCccCCC
Confidence 467788999874
No 21
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A
Probab=22.58 E-value=32 Score=24.97 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||.||....|.+|.
T Consensus 75 ~~fw~~L~P~gg~~P~ 90 (191)
T 1uer_A 75 NLYFTQFRPGKGGAPK 90 (191)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHhcCCCCCCCCC
Confidence 5799999776666664
No 22
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A
Probab=22.07 E-value=33 Score=24.91 Aligned_cols=16 Identities=38% Similarity=1.182 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||.||.-..|.+|.
T Consensus 74 ~~fw~~L~P~gg~~P~ 89 (192)
T 2nyb_A 74 TFYWNCLAPNAGGEPT 89 (192)
T ss_dssp HHHHHTBCTTCCSCCC
T ss_pred HHHHHHhccCCCCCCC
Confidence 5799999876666664
No 23
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura genomics; 1.90A {Francisella tularensis subsp}
Probab=22.01 E-value=31 Score=25.14 Aligned_cols=15 Identities=20% Similarity=0.913 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||+||....| +|.
T Consensus 78 ~~fw~~L~P~gg-~P~ 92 (195)
T 3h1s_A 78 TFYWNCLTPNKT-EAS 92 (195)
T ss_dssp HHHHHTBCSSCC-CCC
T ss_pred HHHHHhcCCCCC-CCC
Confidence 579999987766 664
No 24
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ...
Probab=21.96 E-value=33 Score=24.94 Aligned_cols=15 Identities=33% Similarity=0.922 Sum_probs=11.5
Q ss_pred HHHHHHhcCCCCCCC
Q 034327 55 LFWQCMRSKPGEEPT 69 (98)
Q Consensus 55 LfwrCmRSk~GeEP~ 69 (98)
+||.||.-..|.+|.
T Consensus 76 ~fw~~L~P~ggg~P~ 90 (198)
T 1pl4_A 76 IFWTNLSPNGGGEPK 90 (198)
T ss_dssp HHHHTBCTTCCSCCC
T ss_pred HHHHhcCCCCCCCCC
Confidence 899999776566664
No 25
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.49 E-value=57 Score=16.02 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=22.0
Q ss_pred CCCCCCCCcCccchhHHHHHHHHhcCCCCcccCchHHHHHHHHhcCCCCCC
Q 034327 18 EGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEP 68 (98)
Q Consensus 18 ~~~~~~~rpHRCNDR~eDvlqa~fegnp~~tvp~~fkLfwrCmRSk~GeEP 68 (98)
...|.+.+|+.|+. .|-.|... ..|-+=++...|+-|
T Consensus 4 ~~~h~~~k~~~C~~----------C~k~F~~~----~~L~~H~~~H~~~k~ 40 (46)
T 2enh_A 4 GSSGTGEKPYECDV----------CRKAFSHH----ASLTQHQRVHSGEKP 40 (46)
T ss_dssp CCCCCCSSSCBCTT----------TCCBCSSS----HHHHHHGGGSCCSCC
T ss_pred CCCcCCCCCcCCCC----------cCchhCCH----HHHHHHHHHhCCCCC
Confidence 34577889999973 45555332 334445666666654
No 26
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.32 E-value=27 Score=16.47 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=6.4
Q ss_pred CCCCcCccc
Q 034327 22 RQPKAHRCN 30 (98)
Q Consensus 22 ~~~rpHRCN 30 (98)
.+.||+.|+
T Consensus 2 ~~~k~~~C~ 10 (38)
T 1bhi_A 2 SDDKPFLCT 10 (38)
T ss_dssp TTCCCEECC
T ss_pred CCCcceECC
Confidence 456788886
No 27
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.27 E-value=34 Score=16.92 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.7
Q ss_pred CCCCCcCccc
Q 034327 21 HRQPKAHRCN 30 (98)
Q Consensus 21 ~~~~rpHRCN 30 (98)
|.+.+||.|+
T Consensus 35 H~~~k~~~C~ 44 (46)
T 2ytp_A 35 HTGEKPSGPS 44 (46)
T ss_dssp TSCCCCCSSC
T ss_pred hCCCCCCCCC
Confidence 4455666665
No 28
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A
Probab=21.10 E-value=40 Score=24.76 Aligned_cols=15 Identities=27% Similarity=0.957 Sum_probs=11.3
Q ss_pred HHHHHHhcCCCCCCC
Q 034327 55 LFWQCMRSKPGEEPT 69 (98)
Q Consensus 55 LfwrCmRSk~GeEP~ 69 (98)
+||.||.-..|.+|.
T Consensus 78 ~fw~~L~P~gg~~P~ 92 (207)
T 1ids_A 78 IWWKNLSPNGGDKPT 92 (207)
T ss_dssp HHHHHBCTTCCSCCC
T ss_pred HHHHhcCCCCCCCCC
Confidence 899999766565664
No 29
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.06 E-value=40 Score=16.58 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=10.6
Q ss_pred CCCCCCCCCcCccch
Q 034327 17 PEGEHRQPKAHRCND 31 (98)
Q Consensus 17 ~~~~~~~~rpHRCND 31 (98)
+...|.+.+++.|+.
T Consensus 3 ~~~~h~~~k~~~C~~ 17 (45)
T 2epu_A 3 SGSSGTGQKPFECTH 17 (45)
T ss_dssp CCCCCCSCCSEEETT
T ss_pred CCCCCCCCcCccCCC
Confidence 344577888999974
No 30
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=20.95 E-value=31 Score=16.45 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=8.1
Q ss_pred CCCCCCcCccc
Q 034327 20 EHRQPKAHRCN 30 (98)
Q Consensus 20 ~~~~~rpHRCN 30 (98)
++.+.|||.|+
T Consensus 2 ~~~~~k~~~C~ 12 (37)
T 1va1_A 2 DPGKKKQHICH 12 (37)
T ss_dssp CSSSCCCEECC
T ss_pred CCCCCCCCCCC
Confidence 35677888886
No 31
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.82 E-value=25 Score=16.76 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=8.8
Q ss_pred CCCCCCcCccch
Q 034327 20 EHRQPKAHRCND 31 (98)
Q Consensus 20 ~~~~~rpHRCND 31 (98)
.|.+.|||.|+.
T Consensus 3 ~H~~~k~~~C~~ 14 (37)
T 2elm_A 3 SGSSGHLYYCSQ 14 (37)
T ss_dssp SSSSSCEEECSS
T ss_pred ccCCCcCeECCC
Confidence 356778999873
No 32
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A {Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1
Probab=20.75 E-value=36 Score=24.85 Aligned_cols=16 Identities=31% Similarity=1.151 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||.||....|.+|.
T Consensus 74 ~~fw~~L~P~gg~~P~ 89 (197)
T 1dt0_A 74 TFYWNCLSPNAGGQPT 89 (197)
T ss_dssp HHHHHTBCSSCCSCCC
T ss_pred HHHHHHhccCCCCCCC
Confidence 5799999776666664
No 33
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A
Probab=20.69 E-value=43 Score=24.47 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCCCCCC
Q 034327 54 KLFWQCMRSKPGEEPT 69 (98)
Q Consensus 54 kLfwrCmRSk~GeEP~ 69 (98)
.+||.||.-..|.+|.
T Consensus 84 ~~fw~~L~p~gg~~P~ 99 (203)
T 1mng_A 84 SLFWRLLTPGGAKEPV 99 (203)
T ss_dssp HHHHHHTCTTSCSSCC
T ss_pred HHHHhccCCCCCCCCC
Confidence 4799999765565664
No 34
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=20.53 E-value=28 Score=17.96 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=20.0
Q ss_pred CCCCCcCccchhHHHHHHHHhcCCCCcccCchHHHHHHHHh-cCCCCCCC
Q 034327 21 HRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMR-SKPGEEPT 69 (98)
Q Consensus 21 ~~~~rpHRCNDR~eDvlqa~fegnp~~tvp~~fkLfwrCmR-Sk~GeEP~ 69 (98)
|.+.|||.|+. +|-.|. ....|.+-|+ ...|+++.
T Consensus 2 Ht~~kp~~C~~----------C~k~F~----~~~~L~~H~~~~H~~e~~~ 37 (48)
T 3iuf_A 2 EDRDKPYACDI----------CGKRYK----NRPGLSYHYAHSHLAEEEG 37 (48)
T ss_dssp CTTTSCEECTT----------TCCEES----SHHHHHHHHHHSSCC----
T ss_pred CCCCcCEECCC----------cCcccC----CHHHHHHHhhhhcCCCCCC
Confidence 56789999973 455553 2344566677 77776654
No 35
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.06 E-value=32 Score=15.99 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=8.7
Q ss_pred CCCCCCcCccch
Q 034327 20 EHRQPKAHRCND 31 (98)
Q Consensus 20 ~~~~~rpHRCND 31 (98)
.|.+.+||.|+.
T Consensus 3 ~h~~~k~~~C~~ 14 (37)
T 2elo_A 3 SGSSGRSYSCPV 14 (37)
T ss_dssp CCCCCCCCEETT
T ss_pred CCCCCCCcCCCC
Confidence 356778999973
Done!