Citrus Sinensis ID: 034328

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccc
Coil and Loop (DISEMBL)
MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGsiaynwsqpgmktSVKIIHARLHAQALTLAALAGAAVVEyydhksgskteryakflpadpyahkd
Flexible Loop (DISEMBL)
maehksklesvREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDhksgskteryakflpadpyahkd
Low Complexity Region (SEG)
MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHarlhaqaltlaalagaaVVEYYDHKSGSKTERYAKFLPADPYAHKD
Disordered region (IsUnstruct)
**********VREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHK*********************
Disordered Region (DISOPRED)
*************WVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVV***************************
Disordered Region (DISEMBL)
*********SVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD
Disordered Region (DISPRO)
********ESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGSKTERYAK*LP********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
70609694	98	hypoxia-responsive family protein [Citru	1.0	1.0	0.989	6e-50
357121516	101	PREDICTED: uncharacterized protein LOC10	1.0	0.970	0.722	2e-33
449485692	118	PREDICTED: uncharacterized LOC101204590	1.0	0.830	0.846	7e-32
449435647	98	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.846	1e-31
116778897	90	unknown [Picea sitchensis]	0.867	0.944	0.741	1e-30
356576803	83	PREDICTED: uncharacterized protein LOC10	0.826	0.975	0.777	3e-30
357441759	90	hypothetical protein MTR_1g083420 [Medic	0.826	0.9	0.790	4e-30
363807758	90	uncharacterized protein LOC100797577 [Gl	0.857	0.933	0.738	7e-30
312985279	95	hypoia-responsive family protein 1 [Heve	0.948	0.978	0.806	1e-28
312985281	95	hypoia-responsive family protein 2 [Heve	0.948	0.978	0.806	1e-28

>gi|70609694|gb|AAZ05072.1| hypoxia-responsive family protein [Citrus sinensis]

 Score =  201 bits (510), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 97/98 (98%), Positives = 98/98 (100%)

Query: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60
          MAEHKSKLESVREWV+QNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL
Sbjct: 1  MAEHKSKLESVREWVIQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98
          TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD
Sbjct: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357121516|ref|XP_003562465.1| PREDICTED: uncharacterized protein LOC100834166 [Brachypodium distachyon]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 86/101 (85%), Gaps = 3/101 (2%)

Query: 1   MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60
           MAE K  L+S+R+WVV++KLR VGSLWL+GIAGSIAYNWS+PGMKTSVK+IHARLHAQAL
Sbjct: 1   MAEEKGALQSMRQWVVEHKLRAVGSLWLAGIAGSIAYNWSRPGMKTSVKLIHARLHAQAL 60

Query: 61  TLAALAGAAVVEYYDHK--SGSKTERYAK-FLPADPYAHKD 98
           TLAAL G+A+VEYYDH+  SGS+  +YAK FLP D    KD
Sbjct: 61  TLAALGGSALVEYYDHQSGSGSRVHQYAKQFLPPDSNPKKD 101

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485692|ref|XP_004157247.1| PREDICTED: uncharacterized LOC101204590 [Cucumis sativus]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 91/98 (92%)

Query: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60
          MAE K KLES+R+WV ++KLRTVGSLWLSGIAGSIAYNWSQP MKTSVKIIHARLHAQAL
Sbjct: 1  MAEPKGKLESLRDWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98
          TLAALAGAAVVEYY+HKSG+K ERYAKFLP D Y+HK+
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKE 98

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435647|ref|XP_004135606.1| PREDICTED: uncharacterized protein LOC101204590 [Cucumis sativus]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 91/98 (92%)

Query: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60
          MAE K KLES+R+WV ++KLRTVGSLWLSGIAGSIAYNWSQP MKTSVKIIHARLHAQAL
Sbjct: 1  MAEPKGKLESLRDWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98
          TLAALAGAAVVEYY+HKSG+K ERYAKFLP D Y+HK+
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKE 98

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116778897|gb|ABK21045.1| unknown [Picea sitchensis]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 74/85 (87%)

Query: 3  EHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTL 62
          E+KS +ES R W+ QNKLR VG+LWL+G+AGS AYNWSQP MKTSVKIIHARLH+QALTL
Sbjct: 4  ENKSTIESARAWLSQNKLRAVGTLWLTGLAGSFAYNWSQPNMKTSVKIIHARLHSQALTL 63

Query: 63 AALAGAAVVEYYDHKSGSKTERYAK 87
          AAL GAA+VEYY+H+SG K +RY K
Sbjct: 64 AALTGAALVEYYEHRSGEKAKRYEK 88

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576803|ref|XP_003556519.1| PREDICTED: uncharacterized protein LOC100789542 [Glycine max] gi|255646848|gb|ACU23895.1| unknown [Glycine max]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 75/81 (92%)

Query: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60
          M+E K+++ES+R+WVV++KLRTVG LWLSGI GSIAYNWS+P MKTSVKIIHARLHAQAL
Sbjct: 1  MSEAKTQIESIRKWVVEHKLRTVGCLWLSGITGSIAYNWSRPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHKSGSK 81
          TL ALAGAA+VEYYD K+G+K
Sbjct: 61 TLGALAGAALVEYYDRKTGAK 81

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441759|ref|XP_003591157.1| hypothetical protein MTR_1g083420 [Medicago truncatula] gi|355480205|gb|AES61408.1| hypothetical protein MTR_1g083420 [Medicago truncatula] gi|388492962|gb|AFK34547.1| unknown [Medicago truncatula] gi|388521867|gb|AFK48995.1| unknown [Medicago truncatula]

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 74/81 (91%)

Query: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60
          M++ K+++ES+R+WVV++KLRTVG LWLSGI GSIAYNWS+P MKTSVKIIHARLHAQAL
Sbjct: 1  MSDAKTQIESLRKWVVEHKLRTVGCLWLSGITGSIAYNWSRPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHKSGSK 81
          TL ALAGAAVVEYYDHKS  K
Sbjct: 61 TLGALAGAAVVEYYDHKSEEK 81

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807758|ref|NP_001242430.1| uncharacterized protein LOC100797577 [Glycine max] gi|255640404|gb|ACU20489.1| unknown [Glycine max]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 76/84 (90%)

Query: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60
          M+E K+++ES+R+WVV++KLRTVG LWLSGI+GSIAYNWS+P MKTSVKIIHARLHAQAL
Sbjct: 1  MSEAKTQVESIRKWVVEHKLRTVGCLWLSGISGSIAYNWSRPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHKSGSKTER 84
          TL ALAGAA+VEYYD  +G+K  +
Sbjct: 61 TLGALAGAALVEYYDRNAGAKASK 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312985279|gb|ADR30790.1| hypoia-responsive family protein 1 [Hevea brasiliensis]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/98 (80%), Positives = 88/98 (89%), Gaps = 5/98 (5%)

Query: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60
          MAE KSK ESVREWVV++KLRTVGSLWLSGIAGSIAYNWSQP MKTSV+IIHARLHAQAL
Sbjct: 1  MAEAKSKFESVREWVVEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVRIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98
          TLAALAGAAVVEYYDHK+G++ +RYA ++P     HKD
Sbjct: 61 TLAALAGAAVVEYYDHKTGARADRYAAYIP-----HKD 93

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312985281|gb|ADR30791.1| hypoia-responsive family protein 2 [Hevea brasiliensis]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/98 (80%), Positives = 86/98 (87%), Gaps = 5/98 (5%)

Query: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60
          MAE KSK ESVREWV ++KLRTVG LWLSGIAGSIAYNWSQP MKTSV+IIHARLHAQAL
Sbjct: 1  MAEAKSKFESVREWVAEHKLRTVGCLWLSGIAGSIAYNWSQPNMKTSVRIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98
          TLAALAGAAVVEYYDHK+G+K ERYA ++P     HKD
Sbjct: 61 TLAALAGAAVVEYYDHKTGTKAERYAAYIP-----HKD 93

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2078032	97	AT3G05550 "AT3G05550" [Arabido	0.989	1.0	0.581	3.2e-26
TAIR|locus:2180335	96	AT5G27760 "AT5G27760" [Arabido	0.928	0.947	0.565	2.6e-24

TAIR|locus:2078032 AT3G05550 "AT3G05550" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 57/98 (58%), Positives = 65/98 (66%)

Query:     1 MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHXXXXXXXX 60
             M E K+K E +R+WV  +KLRTVG LWLSGI GSIAYNWSQP MKTSVKIIH        
Sbjct:     1 MVESKTKFEEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQAL 60

Query:    61 XXXXXXXXXVVEYYDHKSGSKTERYAKFLPADPYAHKD 98
                      VVEYYDHK+ + T RY KFLP +  +HKD
Sbjct:    61 TLAALAGAAVVEYYDHKTEA-TNRYPKFLPPENLSHKD 97

GO:0001666 "response to hypoxia" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2180335 AT5G27760 "AT5G27760" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 52/92 (56%), Positives = 64/92 (69%)

Query:     1 MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHXXXXXXXX 60
             MAE K+K+  +REW++++KLRTVG LWLSGI+GSIAYNWS+P MKTSV+IIH        
Sbjct:     1 MAEPKTKVAEIREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQAL 60

Query:    61 XXXXXXXXXVVEYYDHKSGSKTERYAKFLPAD 92
                       VEYYDHKSG+ T+R  KFL  D
Sbjct:    61 TLAALAGAAAVEYYDHKSGA-TDRIPKFLKPD 91


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        81   0.00091  102 3  11 23  0.45    29
                                                     29  0.42    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.57u 0.22s 7.79t   Elapsed:  00:00:00
  Total cpu time:  7.57u 0.22s 7.79t   Elapsed:  00:00:00
  Start:  Fri May 10 21:16:04 2013   End:  Fri May 10 21:16:04 2013

GO:0001666 "response to hypoxia" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0009723 "response to ethylene stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
pfam04588	54	pfam04588, HIG_1_N, Hypoxia induced protein conser	1e-15
cd08765	153	cd08765, Cyt_b561_CYBRD1, Vertebrate cytochrome b(	0.002

>gnl|CDD|203051 pfam04588, HIG_1_N, Hypoxia induced protein conserved region

 Score = 64.1 bits (157), Expect = 1e-15
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 15 VVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGA 68
          V +N L  +G L  +G   +  YN  +   K S K++ AR+ AQ  T+AAL   
Sbjct: 1  VKENPLVPIGCLATAGALLAGLYNMRRGNSKMSQKLMRARVAAQGFTVAALVAG 54

This family is found in proteins thought to be involved in the response to hypoxia. Family members mostly come from diverse eukaryotic organisms however eubacterial members have been identified. This region is found at the N-terminus of the member proteins which are predicted to be transmembrane. Length = 54

>gnl|CDD|176495 cd08765, Cyt_b561_CYBRD1, Vertebrate cytochrome b(561), CYBRD1 gene product

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 20 LRTVGSLWLSGIAGSIAYN--WSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHK 77
          L  +G +++ GIA  I Y   W+    K  +K+IHA LH  A  LA ++  AV  +++ K
Sbjct: 18 LMVIGFIFIQGIA-IIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK 76

Query: 78 S 78
          +
Sbjct: 77 N 77

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG4431	100	consensus Uncharacterized protein, induced by hypo	99.84
PF04588	54	HIG_1_N: Hypoxia induced protein conserved region;	99.73
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	90.61
PRK10404	101	hypothetical protein; Provisional	89.75
PRK10132	108	hypothetical protein; Provisional	88.13
COG4575	104	ElaB Uncharacterized conserved protein [Function u	84.18
PF06946	93	Phage_holin_5: Phage holin; InterPro: IPR009708 Th	80.6

>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]

Probab=99.84  E-value=4.2e-21  Score=131.18  Aligned_cols=78  Identities=22%  Similarity=0.251  Sum_probs=73.2

Q ss_pred             ccccHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 034328            3 EHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS-QPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGS   80 (98)
Q Consensus         3 ~~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r-~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g~   80 (98)
                      +++++.+|+.++++|||++||||+..++++.+++|.+| +++.++||++||.||.|||+||++|++|+++.++++..-+
T Consensus        14 ed~~~~ekl~rk~kenP~VPlG~l~t~aal~~g~y~~r~rGn~~~sq~lmr~RVaAQgftV~AL~~G~~~~~~~e~~~~   92 (100)
T KOG4431|consen   14 EDMSQKEKLLRKAKENPLVPLGCLGTTAALTAGLYKFRSRGNSKMSQHLMRTRVAAQGFTVGALVLGLAYTMYKEYPAK   92 (100)
T ss_pred             chhhHHHHHHHHHHhCCCeeehHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhh
Confidence            56789999999999999999999999999999999999 9999999999999999999999999999999988876443

>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions

Probab=99.73  E-value=1e-18  Score=107.06  Aligned_cols=54  Identities=41%  Similarity=0.501  Sum_probs=44.4

Q ss_pred             HHhCchhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 034328           15 VVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGA   68 (98)
Q Consensus        15 ~~en~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~   68 (98)
                      +||||+.+||++|+++++.++.+++++++.+.|||+||+||||||+||++|+++
T Consensus         1 ~ke~plv~ig~~~~~~~l~~g~~~~~~g~~~~s~klmr~RV~aQ~~tv~~l~~G   54 (54)
T PF04588_consen    1 FKENPLVPIGMLATVGALAYGLYNFRRGNMKTSQKLMRARVYAQGLTVAALVGG   54 (54)
T ss_dssp             S-S--CHHHHHHHHHHHHHHHHHHHTSSS----SSSSS-SHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            589999999999999999999999999999999999999999999999999986

HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=90.61  E-value=0.6  Score=30.49  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHh
Q 034328            7 KLESVREWVVQNKLRTVGSLWLSGIAGSIAYNW   39 (98)
Q Consensus         7 ~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~   39 (98)
                      ..+.+-++++||||..||.+-.++++..+++.+
T Consensus        61 ~~~~~~~~V~e~P~~svgiAagvG~llG~Ll~R   93 (94)
T PF05957_consen   61 AAEQTEDYVRENPWQSVGIAAGVGFLLGLLLRR   93 (94)
T ss_pred             HHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhC
Confidence            367788999999999999887766666555443

>PRK10404 hypothetical protein; Provisional

Probab=89.75  E-value=0.79  Score=31.18  Aligned_cols=30  Identities=10%  Similarity=0.154  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Q 034328            7 KLESVREWVVQNKLRTVGSLWLSGIAGSIA   36 (98)
Q Consensus         7 ~~ek~~~~~~en~y~~ig~~W~~sm~gs~a   36 (98)
                      ..+..-++++||||..||.+-..+++.-+.
T Consensus        68 aa~~td~yV~e~Pw~avGiaagvGlllG~L   97 (101)
T PRK10404         68 AVYRADDYVHEKPWQGIGVGAAVGLVLGLL   97 (101)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            345667899999999999875555544443

>PRK10132 hypothetical protein; Provisional

Probab=88.13  E-value=1.2  Score=30.64  Aligned_cols=33  Identities=15%  Similarity=0.128  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc
Q 034328            8 LESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS   40 (98)
Q Consensus         8 ~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r   40 (98)
                      .+..-++++||||..||.+-..+++.-+.+.+|
T Consensus        75 ~~~~~~~V~~~Pw~svgiaagvG~llG~Ll~RR  107 (108)
T PRK10132         75 VGCADTFVRERPWCSVGTAAAVGIFIGALLSLR  107 (108)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc
Confidence            445667999999999998766665555544433

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=84.18  E-value=2.3  Score=29.51  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHh
Q 034328            7 KLESVREWVVQNKLRTVGSLWLSGIAGSIAYNW   39 (98)
Q Consensus         7 ~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~   39 (98)
                      ..++.=+++.||||.-||.+-+.+++.-+++++
T Consensus        71 a~~~tD~yV~e~PWq~VGvaAaVGlllGlLlsR  103 (104)
T COG4575          71 AADATDDYVRENPWQGVGVAAAVGLLLGLLLSR  103 (104)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhc
Confidence            356677899999999999987777665554443

>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein

Probab=80.60  E-value=11  Score=25.65  Aligned_cols=58  Identities=26%  Similarity=0.316  Sum_probs=41.6

Q ss_pred             HhCchhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 034328           16 VQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGSK   81 (98)
Q Consensus        16 ~en~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g~~   81 (98)
                      -+|||.|..+.-+..+.|..++...+.. .     .-.++||-+  ++.|.++.+++.+-++.+|.
T Consensus        31 v~~K~iPlIs~viGilLG~~~~~~~~~~-~-----l~~~~~aG~--laGlAaTGL~e~~t~r~~~~   88 (93)
T PF06946_consen   31 VPNKWIPLISVVIGILLGAAAYPLTGDG-N-----LALMAWAGG--LAGLAATGLFEQFTNRSKKY   88 (93)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhhcCCCc-c-----HHHHHHHHH--HhhhhhhhHHHHHHhhhhhc
Confidence            4899999999988888888877666421 1     234566644  67788888888888866553

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2lon_A	99	HIG1 domain family member 1B; membrane protein, he	2e-05
2lom_A	93	HIG1 domain family member 1A; membrane protein, he	5e-05

>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens} Length = 99

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 17 QNKLRTVGSLWLSGIAGSIAYNWSQPG-MKTSVKIIHARLHAQALTLAAL-AGAAVVEYY 74
          ++ L  +G      +A    Y     G  K S+ +IH R+ AQA  + A+  GA    Y 
Sbjct: 27 ESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYS 86

Query: 75 DHKSGSKTERYAK 87
          D+      +   K
Sbjct: 87 DYVKRMAQDAGEK 99

>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens} Length = 93

 Score = 37.9 bits (88), Expect = 5e-05
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 23 VGSLWLSGIAGSIAYNWSQPG-MKTSVKIIHARLHAQALTLAALAGAAVVEYYD 75
          VG    + I     Y     G  K S+ +IH R+ AQ   + A+        Y 
Sbjct: 32 VGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYR 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2lon_A	99	HIG1 domain family member 1B; membrane protein, he	99.78
2lom_A	93	HIG1 domain family member 1A; membrane protein, he	99.78

>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}

Probab=99.78  E-value=8.9e-24  Score=143.18  Aligned_cols=77  Identities=22%  Similarity=0.198  Sum_probs=72.1

Q ss_pred             cccHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 034328            4 HKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS-QPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGS   80 (98)
Q Consensus         4 ~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r-~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g~   80 (98)
                      ++|..||+.++++||||+||||+++++++.+++|.++ ++..++|||+||+||+|||+||++|+++++|+||+++--+
T Consensus        14 ees~~~K~~rk~ke~PlvpIg~l~~~~vl~~Gl~~~~~rG~~~~Sqklmr~RV~AQg~tV~al~~g~~ysm~~~~~~~   91 (99)
T 2lon_A           14 EDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYSDYVKR   91 (99)
Confidence            4899999999999999999999999999999999995 7789999999999999999999999999999999988654

>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}

Probab=99.78  E-value=1.1e-23  Score=141.37  Aligned_cols=77  Identities=17%  Similarity=0.173  Sum_probs=71.8

Q ss_pred             ccccHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034328            3 EHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS-QPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSG   79 (98)
Q Consensus         3 ~~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r-~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g   79 (98)
                      ++||..||+.++++||||+||||+++++++++++|.++ ++..++|||+||+||+|||+||++|+++++|+||+++-.
T Consensus        12 ~~e~~~~K~~rk~ke~PlvpIg~~~~~~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys~~~~~~~   89 (93)
T 2lom_A           12 YEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYREFWA   89 (93)
Confidence            35899999999999999999999999999999999988 677999999999999999999999999999999998754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00