Query 034333
Match_columns 97
No_of_seqs 69 out of 71
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 21:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guj_A Phage-like element PBSX 62.8 1.4 4.8E-05 31.6 -0.2 21 63-83 119-140 (155)
2 2lju_A Putative oxidoreductase 31.1 33 0.0011 23.4 2.6 34 55-89 45-78 (108)
3 3i9x_A MUTT/nudix family prote 27.5 58 0.002 21.4 3.3 40 55-96 139-178 (187)
4 2jya_A AGR_C_3324P, uncharacte 25.7 34 0.0012 23.3 1.9 34 55-89 37-70 (106)
5 1xod_A Spred1; sprouty, EVH1, 22.4 46 0.0016 22.3 2.0 36 57-96 79-114 (118)
6 1evh_A WH1 domain, protein (ME 21.0 68 0.0023 21.1 2.6 37 55-95 73-109 (112)
7 1pk1_B Sex COMB on midleg CG94 20.6 28 0.00095 22.3 0.6 20 14-33 10-29 (89)
8 1qc6_A EVH1 domain from ENA/VA 20.6 72 0.0025 21.3 2.7 38 55-96 74-111 (130)
9 1egx_A VAsp, vasodilator-stimu 18.8 81 0.0028 20.9 2.6 37 55-95 75-111 (115)
10 2jp2_A Spred-2, sprouty-relate 17.9 85 0.0029 21.3 2.6 35 57-95 88-122 (126)
No 1
>2guj_A Phage-like element PBSX protein XKDM; X-RAY, SR353, structural genomics, PSI, protein structure initiative; 3.00A {Bacillus subtilis} SCOP: b.106.1.3
Probab=62.76 E-value=1.4 Score=31.61 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=12.4
Q ss_pred cccc-cccccccccccchHHHH
Q 034333 63 SDQR-EYAEEELPLTFSDRAVV 83 (97)
Q Consensus 63 ~~~r-~~~~ee~pltfsd~~~~ 83 (97)
++.. |.++||+||||+|=.++
T Consensus 119 ~d~~~e~ieee~~FtF~d~e~l 140 (155)
T 2guj_A 119 LDVDSEALEEEVPFTFEDFDVP 140 (155)
T ss_dssp TC------CCEEEECCSEEECC
T ss_pred eecCCceEEEEcCceEecchhH
Confidence 3556 88999999999985433
No 2
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=31.09 E-value=33 Score=23.42 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=28.5
Q ss_pred CCCCcccccccccccccccccccchHHHHHHHHHH
Q 034333 55 GESGSTGWSDQREYAEEELPLTFSDRAVVRSFSRR 89 (97)
Q Consensus 55 ~~~~~~~~~~~r~~~~ee~pltfsd~~~~~~fs~~ 89 (97)
-+..-+||.--.|+. ..+-|.|.+++.+-.|+.|
T Consensus 45 ~~nPLMGWtsS~D~~-~qv~L~F~skE~AiayAek 78 (108)
T 2lju_A 45 YTEPLMNWTGSHDTK-QQVCLSFTTRELAIAYAVA 78 (108)
T ss_dssp CCCCCCCCSSSCCCC-CCSCEEESSHHHHHHHHHH
T ss_pred ccCCCccccCCCCcc-ccceEecCCHHHHHHHHHH
Confidence 355578999999986 5589999999999999876
No 3
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=27.48 E-value=58 Score=21.42 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhhh
Q 034333 55 GESGSTGWSDQREYAEEELPLTFSDRAVVRSFSRRAKKFIKK 96 (97)
Q Consensus 55 ~~~~~~~~~~~r~~~~ee~pltfsd~~~~~~fs~~~k~~~~~ 96 (97)
+|.....|+...+.. ++++.|..+.+++.+-++.+..+++
T Consensus 139 ~E~~~~~W~~~~el~--~~~l~~~~~~il~~a~~~l~~~~~~ 178 (187)
T 3i9x_A 139 DDAAEIGLFPMTEAL--ELPLAFDHLDMLKKAFSAITEEFLL 178 (187)
T ss_dssp TTTTTEEEEEHHHHT--TSCBSTTHHHHHHHHHHHHHHHHHT
T ss_pred CceeEEEEEeHHHcc--cCCCCccHHHHHHHHHHHHHhhhhc
Confidence 344456677644432 4578999999998877776665543
No 4
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=25.68 E-value=34 Score=23.34 Aligned_cols=34 Identities=15% Similarity=0.391 Sum_probs=28.3
Q ss_pred CCCCcccccccccccccccccccchHHHHHHHHHH
Q 034333 55 GESGSTGWSDQREYAEEELPLTFSDRAVVRSFSRR 89 (97)
Q Consensus 55 ~~~~~~~~~~~r~~~~ee~pltfsd~~~~~~fs~~ 89 (97)
-+..-+||.--.|+. ..+-|.|.+++.+-.|+.|
T Consensus 37 w~nPLMGWtsS~D~~-~qv~L~F~skE~AiayAek 70 (106)
T 2jya_A 37 KIDPIMGYTSSSDMK-QQVKLTFETQEQAEAYAQR 70 (106)
T ss_dssp CCCTTTCSCSCCCSE-EEEEEEESSHHHHHHHHHH
T ss_pred ccCCCcCcCCCCCcc-ccceEecCCHHHHHHHHHH
Confidence 355578999999986 5578999999999999876
No 5
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=22.42 E-value=46 Score=22.28 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=27.4
Q ss_pred CCcccccccccccccccccccchHHHHHHHHHHHHHHhhh
Q 034333 57 SGSTGWSDQREYAEEELPLTFSDRAVVRSFSRRAKKFIKK 96 (97)
Q Consensus 57 ~~~~~~~~~r~~~~ee~pltfsd~~~~~~fs~~~k~~~~~ 96 (97)
..++.|-+. +--.-|+|++..-+++|.+++.+-+..
T Consensus 79 p~Fh~w~~~----~~~~GL~F~se~eA~~F~~~v~~al~~ 114 (118)
T 1xod_A 79 PTFHHWRIG----DKKFGLTFQSPADARAFDRGIRRAIED 114 (118)
T ss_dssp TTEEEEEET----TEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEeC----CEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 346677664 334789999999999999998876653
No 6
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=20.98 E-value=68 Score=21.14 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=29.5
Q ss_pred CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhh
Q 034333 55 GESGSTGWSDQREYAEEELPLTFSDRAVVRSFSRRAKKFIK 95 (97)
Q Consensus 55 ~~~~~~~~~~~r~~~~ee~pltfsd~~~~~~fs~~~k~~~~ 95 (97)
....++.|-+.| --.-|+|++..-++.|.+++.+-+.
T Consensus 73 ~~p~Fh~w~~~~----~~~GLnF~se~eA~~F~~~v~~al~ 109 (112)
T 1evh_A 73 ATQTFHQWRDAR----QVYGLNFGSKEDANVFASAMMHALE 109 (112)
T ss_dssp CSSSEEEEECSS----CEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCccceeEecCC----EEEEEecCCHHHHHHHHHHHHHHHH
Confidence 445688888865 3567999999999999999887664
No 7
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=20.60 E-value=28 Score=22.31 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=15.9
Q ss_pred hhhhhhccccchhHHHHHHH
Q 034333 14 IGSHTNYWRDEDTALFILKH 33 (97)
Q Consensus 14 ltSHt~YW~s~DtALFILk~ 33 (97)
+.+.+..|+-+||+-||-+.
T Consensus 10 ~~~~v~~WsvedV~~wl~~~ 29 (89)
T 1pk1_B 10 LRSQPIDWTIEEVIQYIESN 29 (89)
T ss_dssp -CCCGGGCCHHHHHHHHHHH
T ss_pred CCCCchhCCHHHHHHHHHHH
Confidence 45678899999999998543
No 8
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=20.56 E-value=72 Score=21.32 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=28.9
Q ss_pred CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhhh
Q 034333 55 GESGSTGWSDQREYAEEELPLTFSDRAVVRSFSRRAKKFIKK 96 (97)
Q Consensus 55 ~~~~~~~~~~~r~~~~ee~pltfsd~~~~~~fs~~~k~~~~~ 96 (97)
+...++.|-+. +.-.-|+|.+..-++.|.++..+-+..
T Consensus 74 ~~~~Fh~w~~~----~~~~GL~F~se~eA~~F~~~~~~al~~ 111 (130)
T 1qc6_A 74 ATPTFHQWRDA----RQVYGLNFASKEEATTFSNAMLFALNI 111 (130)
T ss_dssp EETTEEEEECS----SCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEcC----CEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 33457777654 356789999999999999998877654
No 9
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=18.75 E-value=81 Score=20.92 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=29.1
Q ss_pred CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhh
Q 034333 55 GESGSTGWSDQREYAEEELPLTFSDRAVVRSFSRRAKKFIK 95 (97)
Q Consensus 55 ~~~~~~~~~~~r~~~~ee~pltfsd~~~~~~fs~~~k~~~~ 95 (97)
....++.|-+.| --.-|+|++..-++.|.++..+-+.
T Consensus 75 ~~p~FH~w~~~~----~~~GLnF~se~eA~~F~~~v~~al~ 111 (115)
T 1egx_A 75 ATPNFHQWRDAR----QVWGLNFGSKEDAAQFAAGMASALE 111 (115)
T ss_dssp SSTTEEEEESSS----CEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCccceEEecCC----EEEEEecCCHHHHHHHHHHHHHHHH
Confidence 444578888865 3567999999999999998877654
No 10
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=17.90 E-value=85 Score=21.34 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=26.5
Q ss_pred CCcccccccccccccccccccchHHHHHHHHHHHHHHhh
Q 034333 57 SGSTGWSDQREYAEEELPLTFSDRAVVRSFSRRAKKFIK 95 (97)
Q Consensus 57 ~~~~~~~~~r~~~~ee~pltfsd~~~~~~fs~~~k~~~~ 95 (97)
..++.|-+.| --.-|+|.+..-+++|.++..+-+.
T Consensus 88 p~FH~w~~~~----~~~GLnF~se~eA~~F~~~v~~al~ 122 (126)
T 2jp2_A 88 PTFHHWKVDN----RKFGLTFQSPADARAFDRGVRKAIE 122 (126)
T ss_dssp TTEEEEECSS----SEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcceEEEcCC----EEEEEecCCHHHHHHHHHHHHHHHH
Confidence 3466676654 2377999999999999998877654
Done!