BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034338
MFDDLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIR
EETGGRPVQKAKVNTLNIIHYKIRSNYDVEIHVCGFR

High Scoring Gene Products

Symbol, full name Information P value
AT2G34160 protein from Arabidopsis thaliana 3.0e-21
AT1G29250 protein from Arabidopsis thaliana 3.9e-21
DAN1
AT3G04620
protein from Arabidopsis thaliana 5.7e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034338
        (97 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2055516 - symbol:AT2G34160 species:3702 "Arabi...   249  3.0e-21   1
TAIR|locus:2029949 - symbol:AT1G29250 species:3702 "Arabi...   248  3.9e-21   1
TAIR|locus:2084873 - symbol:DAN1 "D NUCLDUO1-ACTIVATEEIC ...   237  5.7e-20   1


>TAIR|locus:2055516 [details] [associations]
            symbol:AT2G34160 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005829 "cytosol" evidence=IDA] [GO:0009062 "fatty
            acid catabolic process" evidence=RCA] InterPro:IPR002775
            Pfam:PF01918 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003676 EMBL:AC002341 EMBL:AY084411 EMBL:AK117501
            IPI:IPI00536086 PIR:B84753 RefSeq:NP_565781.1 UniGene:At.37844
            PDB:1VM0 PDB:2Q3V PDBsum:1VM0 PDBsum:2Q3V ProteinModelPortal:O22969
            SMR:O22969 STRING:O22969 PaxDb:O22969 PRIDE:O22969 DNASU:817977
            EnsemblPlants:AT2G34160.1 GeneID:817977 KEGG:ath:AT2G34160
            TAIR:At2g34160 eggNOG:NOG76241 HOGENOM:HOG000237559
            InParanoid:O22969 OMA:MEEITDG PhylomeDB:O22969
            ProtClustDB:CLSN2688072 EvolutionaryTrace:O22969
            Genevestigator:O22969 GermOnline:AT2G34160 InterPro:IPR014560
            PIRSF:PIRSF030333 Uniprot:O22969
        Length = 130

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/66 (75%), Positives = 60/66 (90%)

Query:     9 YLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRP 67
             Y++L +RYMQQ+N+VELSALGMAIATVVT+ EILKNNG AVEKKI TSTVDI+++  GRP
Sbjct:    35 YVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRP 94

Query:    68 VQKAKV 73
             VQKAK+
Sbjct:    95 VQKAKI 100


>TAIR|locus:2029949 [details] [associations]
            symbol:AT1G29250 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR002775 Pfam:PF01918
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886
            GO:GO:0005634 GO:GO:0003676 EMBL:AC021043 HOGENOM:HOG000237559
            ProtClustDB:CLSN2688072 InterPro:IPR014560 PIRSF:PIRSF030333
            EMBL:AY052259 EMBL:AY060517 EMBL:AY085788 IPI:IPI00533218
            PIR:A86415 RefSeq:NP_564325.1 UniGene:At.15801
            ProteinModelPortal:Q9LP53 SMR:Q9LP53 STRING:Q9LP53 PRIDE:Q9LP53
            EnsemblPlants:AT1G29250.1 GeneID:839799 KEGG:ath:AT1G29250
            TAIR:At1g29250 InParanoid:Q9LP53 OMA:MEEITEG PhylomeDB:Q9LP53
            Genevestigator:Q9LP53 Uniprot:Q9LP53
        Length = 130

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 50/66 (75%), Positives = 61/66 (92%)

Query:     9 YLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRP 67
             Y++L +RYMQQ+ +VELSALGMAIATVVT+AEILKNNG AVEKKI TSTVDI++++ GRP
Sbjct:    35 YVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRP 94

Query:    68 VQKAKV 73
             VQKAK+
Sbjct:    95 VQKAKI 100


>TAIR|locus:2084873 [details] [associations]
            symbol:DAN1 "D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN
            1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0048235 "pollen sperm cell
            differentiation" evidence=IEP] [GO:0006302 "double-strand break
            repair" evidence=RCA] [GO:0010332 "response to gamma radiation"
            evidence=RCA] InterPro:IPR002775 Pfam:PF01918 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003676 EMBL:AC011437 GO:GO:0048235
            HOGENOM:HOG000237559 InterPro:IPR014560 PIRSF:PIRSF030333
            EMBL:BT010655 EMBL:BT010971 IPI:IPI00522733 RefSeq:NP_187113.1
            UniGene:At.40804 ProteinModelPortal:Q9SR12 SMR:Q9SR12 IntAct:Q9SR12
            PaxDb:Q9SR12 PRIDE:Q9SR12 EnsemblPlants:AT3G04620.1 GeneID:819620
            KEGG:ath:AT3G04620 TAIR:At3g04620 eggNOG:NOG319557
            InParanoid:Q9SR12 OMA:MAMEVAT PhylomeDB:Q9SR12
            ProtClustDB:CLSN2914699 Genevestigator:Q9SR12 Uniprot:Q9SR12
        Length = 164

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 48/66 (72%), Positives = 59/66 (89%)

Query:     9 YLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRP 67
             Y++L +RY+QQHNEVELSALGMAI TVVTI+EILKNNGLA EKK+ TSTV +++ET G+ 
Sbjct:    52 YVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVLTSTVGMKDETKGKM 111

Query:    68 VQKAKV 73
             VQKAK+
Sbjct:   112 VQKAKI 117


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       97        97   0.00091  102 3  11 22  0.50    29
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  503 (54 KB)
  Total size of DFA:  94 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.97u 0.16s 12.13t   Elapsed:  00:00:01
  Total cpu time:  11.97u 0.16s 12.13t   Elapsed:  00:00:01
  Start:  Fri May 10 21:22:48 2013   End:  Fri May 10 21:22:49 2013

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