BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034338
         (97 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|1VM0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|2Q3V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
 pdb|2Q3V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
          Length = 130

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 57/66 (86%), Gaps = 1/66 (1%)

Query: 9   YLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRP 67
           Y++L +RY QQ+N+VELSALG AIATVVT+ EILKNNG AVEKKI TS VDI+++  GRP
Sbjct: 35  YVNLAKRYXQQYNDVELSALGXAIATVVTVTEILKNNGFAVEKKIXTSIVDIKDDARGRP 94

Query: 68  VQKAKV 73
           VQKAK+
Sbjct: 95  VQKAKI 100


>pdb|2RA5|A Chain A, Crystal Structure Of The Putative Transcriptional
           Regulator From Streptomyces Coelicolor
          Length = 247

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 20  NEVELSA-LGMAIATVVTIAEILKNNGLAVEKKITTSTV---------------DIREET 63
           NE+EL+A LG++  TV    + L + GL V ++   + V               D  E  
Sbjct: 42  NEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGVGTQVVHSKVRRPLELSSLYDDLEAA 101

Query: 64  GGRPVQKAKVNTL 76
           G RP  K  VNT+
Sbjct: 102 GQRPATKVLVNTV 114


>pdb|2HOE|A Chain A, Crystal Structure Of N-Acetylglucosamine Kinase (Tm1224)
          From Thermotoga Maritima At 2.46 A Resolution
          Length = 380

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 20 NEVELSA-LGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKVN 74
          + VEL+  LG+   TV  IA+I    G+ VE+K +   V       GRP +  K++
Sbjct: 35 SRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGV-------GRPTKSLKIS 83


>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
 pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
 pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
 pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
 pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
 pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
          Length = 618

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 10  LSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGR 66
           L L R + ++++    A+   +A V T  E  KN G A+  +   + +DI+ E+G R
Sbjct: 255 LRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,478,787
Number of Sequences: 62578
Number of extensions: 75870
Number of successful extensions: 173
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 6
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)