BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034338
         (97 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana
           GN=At2g34160 PE=1 SV=1
          Length = 130

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 60/66 (90%), Gaps = 1/66 (1%)

Query: 9   YLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRP 67
           Y++L +RYMQQ+N+VELSALGMAIATVVT+ EILKNNG AVEKKI TSTVDI+++  GRP
Sbjct: 35  YVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRP 94

Query: 68  VQKAKV 73
           VQKAK+
Sbjct: 95  VQKAKI 100


>sp|Q8TI16|ECFA_METAC Energy-coupling factor transporter ATP-binding protein EcfA
           OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
           2834 / JCM 12185 / C2A) GN=ecfA PE=3 SV=1
          Length = 274

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 20  NEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62
           +++ L  LG+   +++ +AE LKN+G+AV  + T+S     EE
Sbjct: 224 SDLSLRYLGLTPPSLIELAERLKNHGVAVPWEKTSSPSSFAEE 266


>sp|C5B780|SYP_EDWI9 Proline--tRNA ligase OS=Edwardsiella ictaluri (strain 93-146)
           GN=proS PE=3 SV=1
          Length = 572

 Score = 29.3 bits (64), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 36  TIAEILKNNGLAVEKKITTSTVDIREETG 64
           TIAE+++ +GL +EK + T  V   EE+G
Sbjct: 262 TIAELVEQHGLPIEKTVKTLLVHASEESG 290


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,008,037
Number of Sequences: 539616
Number of extensions: 1025382
Number of successful extensions: 3056
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3048
Number of HSP's gapped (non-prelim): 18
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)