Query 034338
Match_columns 97
No_of_seqs 85 out of 87
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 12:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1581 Ssh10b Archaeal DNA-bi 99.9 4.3E-24 9.3E-29 147.9 8.3 69 10-79 20-90 (91)
2 TIGR00285 DNA-binding protein 99.9 4.2E-23 9.2E-28 141.5 8.5 71 8-79 15-87 (87)
3 PRK04015 DNA/RNA-binding prote 99.9 9.5E-23 2.1E-27 140.4 8.3 71 8-79 18-90 (91)
4 PF01918 Alba: Alba; InterPro 99.2 7.3E-11 1.6E-15 74.3 6.7 51 4-54 10-68 (70)
5 KOG2567 Uncharacterized conser 97.5 4.8E-05 1E-09 58.4 2.1 74 8-81 32-116 (179)
6 PF12328 Rpp20: Rpp20 subunit 97.2 0.00083 1.8E-08 49.2 5.4 41 20-61 62-102 (144)
7 PF02780 Transketolase_C: Tran 78.4 7.5 0.00016 26.0 5.2 39 17-55 7-46 (124)
8 PRK13584 hisG ATP phosphoribos 75.2 2 4.2E-05 33.5 1.8 56 7-62 111-179 (204)
9 PLN02245 ATP phosphoribosyl tr 70.0 7.8 0.00017 33.1 4.3 54 7-60 202-271 (403)
10 TIGR00070 hisG ATP phosphoribo 64.2 6.3 0.00014 29.9 2.4 51 8-58 116-179 (182)
11 COG0040 HisG ATP phosphoribosy 63.4 5.6 0.00012 32.6 2.1 56 7-62 122-190 (290)
12 COG0504 PyrG CTP synthase (UTP 58.6 11 0.00024 33.5 3.3 32 23-55 10-42 (533)
13 PRK13583 hisG ATP phosphoribos 55.0 21 0.00045 28.2 3.9 56 7-62 137-208 (228)
14 PF01634 HisG: ATP phosphoribo 54.7 10 0.00022 28.2 2.1 56 7-62 73-141 (163)
15 PRK01686 hisG ATP phosphoribos 54.5 17 0.00038 28.2 3.4 56 7-62 121-189 (215)
16 COG3967 DltE Short-chain dehyd 49.9 14 0.0003 30.0 2.3 21 10-30 20-40 (245)
17 cd03113 CTGs CTP synthetase (C 47.0 23 0.00049 28.8 3.1 32 23-55 9-41 (255)
18 PF06418 CTP_synth_N: CTP synt 46.6 20 0.00044 29.4 2.8 31 24-55 11-42 (276)
19 PF09821 AAA_assoc_C: C-termin 42.3 26 0.00056 24.8 2.5 33 2-34 11-46 (120)
20 PTZ00061 DNA-directed RNA poly 40.3 5.4 0.00012 31.3 -1.3 47 36-82 14-61 (205)
21 COG3958 Transketolase, C-termi 38.9 49 0.0011 27.7 4.0 30 17-46 190-219 (312)
22 COG1360 MotB Flagellar motor p 37.2 52 0.0011 25.3 3.7 70 10-80 153-243 (244)
23 PRK05380 pyrG CTP synthetase; 35.1 39 0.00085 29.9 3.0 32 23-55 11-43 (533)
24 COG4552 Eis Predicted acetyltr 35.0 26 0.00056 30.2 1.8 59 32-93 283-342 (389)
25 PF03793 PASTA: PASTA domain; 34.6 90 0.0019 18.3 3.7 16 28-46 8-23 (63)
26 PLN03111 DNA-directed RNA poly 34.5 6.8 0.00015 30.7 -1.6 46 36-82 17-63 (206)
27 PLN02683 pyruvate dehydrogenas 33.4 69 0.0015 26.2 4.0 63 19-82 228-291 (356)
28 CHL00144 odpB pyruvate dehydro 32.7 80 0.0017 25.4 4.2 64 18-82 200-264 (327)
29 PLN02790 transketolase 31.3 71 0.0015 28.1 4.0 34 20-53 541-575 (654)
30 PRK10310 PTS system galactitol 30.8 90 0.002 20.6 3.6 35 21-55 5-42 (94)
31 TIGR00337 PyrG CTP synthase. C 30.2 53 0.0011 29.0 3.0 32 23-55 10-42 (525)
32 PRK11892 pyruvate dehydrogenas 29.3 82 0.0018 26.9 3.9 66 16-82 337-403 (464)
33 PRK12753 transketolase; Review 29.1 77 0.0017 28.1 3.8 32 20-51 550-582 (663)
34 PF13680 DUF4152: Protein of u 27.9 32 0.00069 27.5 1.1 31 9-41 117-147 (227)
35 PF12146 Hydrolase_4: Putative 27.9 96 0.0021 19.8 3.2 30 20-49 18-47 (79)
36 PRK09212 pyruvate dehydrogenas 27.2 1.3E+02 0.0028 24.1 4.5 63 18-81 200-263 (327)
37 PF13155 Toprim_2: Toprim-like 26.3 1.5E+02 0.0032 18.5 3.9 48 4-57 8-55 (96)
38 PLN02327 CTP synthase 25.6 64 0.0014 28.8 2.7 31 23-54 10-41 (557)
39 TIGR00232 tktlase_bact transke 25.3 1.1E+02 0.0024 27.0 4.1 37 19-55 540-577 (653)
40 PF05137 PilN: Fimbrial assemb 25.3 1.6E+02 0.0035 17.6 3.9 33 16-48 20-52 (78)
41 PF03871 RNA_pol_Rpb5_N: RNA p 23.3 3.4 7.3E-05 27.8 -4.4 46 36-82 16-65 (93)
42 PF03990 DUF348: Domain of unk 23.1 33 0.00072 19.8 0.4 25 22-46 2-29 (43)
43 PTZ00089 transketolase; Provis 22.6 1.2E+02 0.0026 26.9 3.8 34 20-54 549-583 (661)
44 PRK05899 transketolase; Review 22.4 1.3E+02 0.0028 26.0 3.9 36 19-54 510-546 (624)
45 COG1154 Dxs Deoxyxylulose-5-ph 22.3 1.1E+02 0.0024 28.0 3.5 38 16-53 498-536 (627)
46 KOG0523 Transketolase [Carbohy 21.2 1.3E+02 0.0029 27.5 3.8 33 20-52 506-539 (632)
47 PRK12754 transketolase; Review 20.2 1.4E+02 0.003 26.8 3.7 35 20-54 550-585 (663)
No 1
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=99.91 E-value=4.3e-24 Score=147.88 Aligned_cols=69 Identities=26% Similarity=0.353 Sum_probs=65.7
Q ss_pred HHHHHHhccCCeEEEeecchhhhHHHHHHHHHhhCCe--EEEEEEeeeeeeeccCCCCcccccceEEEEEee
Q 034338 10 LSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKVNTLNII 79 (97)
Q Consensus 10 ~lakqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l--a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k 79 (97)
..-+|||+|.+||.|||||+|||+|||||||+||||+ +.+|+|+++|++++.++ |+..++|.|||+|.|
T Consensus 20 Avlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~~~-gr~~~VS~IeI~L~k 90 (91)
T COG1581 20 AVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEGED-GRTRNVSTIEIVLAK 90 (91)
T ss_pred HHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeecCC-CceeeEEEEEEEEec
Confidence 3458999999999999999999999999999999999 99999999999999996 898899999999986
No 2
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=99.89 E-value=4.2e-23 Score=141.51 Aligned_cols=71 Identities=30% Similarity=0.362 Sum_probs=66.0
Q ss_pred HHHHHHHHhccCCeEEEeecchhhhHHHHHHHHHhhCCe--EEEEEEeeeeeeeccCCCCcccccceEEEEEee
Q 034338 8 AYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKVNTLNII 79 (97)
Q Consensus 8 ~~~lakqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l--a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k 79 (97)
....-+|||+|.+||.|||||+|||+|||||||+|||++ +.+++|.++|+++.+++ |+..++|+|||+|.|
T Consensus 15 Vlavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~~~-G~~~~VStIEI~l~~ 87 (87)
T TIGR00285 15 VLAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKSEQ-GREVNVSTIEIVLAK 87 (87)
T ss_pred HHHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeecCC-CceeeEEEEEEEEeC
Confidence 345678999999999999999999999999999999999 77999999999999986 998899999999975
No 3
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=99.88 E-value=9.5e-23 Score=140.45 Aligned_cols=71 Identities=28% Similarity=0.348 Sum_probs=65.6
Q ss_pred HHHHHHHHhccCCeEEEeecchhhhHHHHHHHHHhhCCe--EEEEEEeeeeeeeccCCCCcccccceEEEEEee
Q 034338 8 AYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKVNTLNII 79 (97)
Q Consensus 8 ~~~lakqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l--a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k 79 (97)
....-+||+++.+||.|||+|+|||+|||||||||||++ +.+++|.+||+.+++++ |+..++|+|||+|+|
T Consensus 18 V~~~~~~l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~~~-g~~~~VS~IEI~l~k 90 (91)
T PRK04015 18 VLAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTSED-GRESNVSTIEIVLEK 90 (91)
T ss_pred HHHHHHHHhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeecCC-CcEEEEEEEEEEEec
Confidence 345567899999999999999999999999999999999 99999999999999986 888889999999987
No 4
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=99.19 E-value=7.3e-11 Score=74.32 Aligned_cols=51 Identities=29% Similarity=0.352 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHh-----ccCCeEEEeecchhhhHHHHHHHHHhhCC---eEEEEEEee
Q 034338 4 DLVAAYLSLQRYM-----QQHNEVELSALGMAIATVVTIAEILKNNG---LAVEKKITT 54 (97)
Q Consensus 4 ~~~~~~~lakqf~-----~~~~EVeLsAlG~AIS~aV~VAEILKn~~---la~~KkI~T 54 (97)
....|..-+..++ +++++|.|+|+|+||++||++|||+|+++ +..+.++..
T Consensus 10 ~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~ 68 (70)
T PF01918_consen 10 PIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS 68 (70)
T ss_dssp -HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence 4567777788888 88999999999999999999999999994 566666543
No 5
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=4.8e-05 Score=58.41 Aligned_cols=74 Identities=27% Similarity=0.278 Sum_probs=49.9
Q ss_pred HHHHHHHHhcc--CCeEEEeecchhhhHHHHHHHHHhhC--CeEEEEEEee-eeeeec--cCCC----CcccccceEEEE
Q 034338 8 AYLSLQRYMQQ--HNEVELSALGMAIATVVTIAEILKNN--GLAVEKKITT-STVDIR--EETG----GRPVQKAKVNTL 76 (97)
Q Consensus 8 ~~~lakqf~~~--~~EVeLsAlG~AIS~aV~VAEILKn~--~la~~KkI~T-sT~~i~--~e~r----g~~v~kskIEIv 76 (97)
|-.+|+-.+++ +.+|.+||.|+||++.|++||||||+ ||=.+.+|.- |+++.= .+++ --..+++.|-|+
T Consensus 32 ~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~~eGl~pl~vtRhVp~l~Il 111 (179)
T KOG2567|consen 32 LIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPTEEGLEPLEVTRHVPMLHIL 111 (179)
T ss_pred HHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhcccccccCccceEEeeccceEEEE
Confidence 45567777775 89999999999999999999999987 5533334432 222110 1110 113367899999
Q ss_pred Eeeec
Q 034338 77 NIIHY 81 (97)
Q Consensus 77 L~k~~ 81 (97)
|++..
T Consensus 112 LS~de 116 (179)
T KOG2567|consen 112 LSLDE 116 (179)
T ss_pred Eeccc
Confidence 98864
No 6
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=97.21 E-value=0.00083 Score=49.15 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=32.8
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeecc
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIRE 61 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~ 61 (97)
.+|.|+|+|+||.+|+.+|--++++. --.-.|+|+|+++-|
T Consensus 62 ~~V~v~gtGkAIeKal~la~~Fq~~~-~~~V~V~TgTV~vvD 102 (144)
T PF12328_consen 62 EEVTVKGTGKAIEKALSLALWFQRKK-GYKVEVRTGTVEVVD 102 (144)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTT----EEEEEEEEEEEE
T ss_pred cEEEEEeccHHHHHHHHHHHHHhhcC-CeEEEEEeceEEEEE
Confidence 79999999999999999999999885 223467888876543
No 7
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=78.39 E-value=7.5 Score=26.02 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=32.9
Q ss_pred ccCCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 17 QQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 17 ~~~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
++-.+|.|=|-|.....|..+|+.|+.+|+ +.+-++++-
T Consensus 7 ~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i 46 (124)
T PF02780_consen 7 REGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTI 46 (124)
T ss_dssp ESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred eCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEE
Confidence 345789999999999999999999999998 666666553
No 8
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=75.22 E-value=2 Score=33.46 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccC----Ce------EEE---eecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQH----NE------VEL---SALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~----~E------VeL---sAlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
.|-|++++|.+.. +- ||+ -|+-.+|...|.+-.-||.|||..+..|..|+..+--+
T Consensus 111 kyp~it~~yf~~~Gi~~~ii~l~GsvElaP~~GlAD~IvDiv~TG~TLr~NgL~~~e~I~~ssa~LI~n 179 (204)
T PRK13584 111 SYVHTAETYFKSKGIDVELIKLNGSVELACVVDMVDGIVDIVQTGTTLKANGLVEKQHISDINARLITN 179 (204)
T ss_pred CcHHHHHHHHHHcCCeEEEEECCCceeeccccCCccEEEEEECccHHHHHCCCEEEEEEEeeEEEEEEc
Confidence 3789999999853 22 222 13445588889999999999999999999988876654
No 9
>PLN02245 ATP phosphoribosyl transferase
Probab=70.04 E-value=7.8 Score=33.08 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=39.9
Q ss_pred HHHHHHHHHhccCCe--EEEe------------ecchhhhHHHHHHHHHhhCCeEEEE--EEeeeeeeec
Q 034338 7 AAYLSLQRYMQQHNE--VELS------------ALGMAIATVVTIAEILKNNGLAVEK--KITTSTVDIR 60 (97)
Q Consensus 7 ~~~~lakqf~~~~~E--VeLs------------AlG~AIS~aV~VAEILKn~~la~~K--kI~TsT~~i~ 60 (97)
.|.||+++|+++++. ++|. |+-.||...|.+-.-||.|||..+. .|..|+..+-
T Consensus 202 kYp~ltr~ff~~~Gv~~v~Iv~l~GAvE~AP~lGlADaIvDIVsTGtTLraNgLk~i~~~~Il~S~A~LI 271 (403)
T PLN02245 202 GFTYLGPKFMKDNGFKHVTFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLV 271 (403)
T ss_pred CCHHHHHHHHHHcCCCeEEEEECcCceecccccCchhhhcchhccHHHHHHCCCEEccCceEEEEEEEEE
Confidence 378999999997654 4543 3334588889999999999997775 7766665444
No 10
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=64.17 E-value=6.3 Score=29.89 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCC----------eEEEe---ecchhhhHHHHHHHHHhhCCeEEEEEEeeeeee
Q 034338 8 AYLSLQRYMQQHN----------EVELS---ALGMAIATVVTIAEILKNNGLAVEKKITTSTVD 58 (97)
Q Consensus 8 ~~~lakqf~~~~~----------EVeLs---AlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~ 58 (97)
|.|++++|.++.+ -||+. |+-.||...|.+..-||.|||..+..|..|+-.
T Consensus 116 yp~i~~~~f~~~Gi~v~ii~l~GsvE~aP~~GlaD~IvDiv~TG~TL~~NgL~~ie~i~~s~a~ 179 (182)
T TIGR00070 116 YPNLARRYFEKKGIDVEIIKLNGSVELAPLLGLADAIVDIVSTGTTLRENGLRIIEVILESSAR 179 (182)
T ss_pred CHHHHHHHHHHcCCeEEEEECcceeecccCCCceeEEEEEeCCHHHHHHCCCEEeeEEEeeEEE
Confidence 7889999988543 23332 233457777888999999999888888877653
No 11
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=63.44 E-value=5.6 Score=32.59 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=43.7
Q ss_pred HHHHHHHHHhccCCe----EEE---------eecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQHNE----VEL---------SALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~~E----VeL---------sAlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
.|.||+++|.++.+. |.| -|+..||...|.+-.-||-|||..+..|..++.-+--+
T Consensus 122 kYp~l~~~yf~~~g~~~~Ii~l~GsvE~aP~~GlADaIvDivsTG~TLkaNgL~~id~i~~ssa~LI~n 190 (290)
T COG0040 122 KYPNLARKYFAEKGIDVEIIKLSGSVELAPALGLADAIVDIVSTGTTLKANGLKEIEVIYDSSARLIVN 190 (290)
T ss_pred ccHHHHHHHHHHcCceEEEEEccCcEeeccccCccceEEEeecCCHhHHHCCCEEEEEEEeeEEEEEec
Confidence 589999999986432 222 25678899999999999999998888888887755433
No 12
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=58.57 E-value=11 Score=33.48 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=27.1
Q ss_pred EEeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 23 eLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
.+|+||+-|+. -+++-+||++|+ |+.-||.-.
T Consensus 10 VvSslGKGi~a-aSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 10 VVSSLGKGITA-ASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred eecccccHHHH-HHHHHHHHHCCceEEEEecccc
Confidence 47999999975 489999999999 999887653
No 13
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=54.99 E-value=21 Score=28.16 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=39.9
Q ss_pred HHHHHHHHHhccC--C---eEEEe---------ecchhhhHHHHHHHHHhhCCeEEEE--EEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQH--N---EVELS---------ALGMAIATVVTIAEILKNNGLAVEK--KITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~--~---EVeLs---------AlG~AIS~aV~VAEILKn~~la~~K--kI~TsT~~i~~e 62 (97)
.|.|++++|.++. + -|.++ |+-.||-..|.+-.-||.|||..+. .|.-|+-.+--+
T Consensus 137 kYp~it~~yf~~~Gv~~~~Iv~l~GsvElaP~~GlAD~IvDivsTG~TLr~NgL~~i~~~~Il~SsA~LI~n 208 (228)
T PRK13583 137 KYWRLTQQFLSQKGVQDYRIVESLGATEGAPANGSAEIIVDITSTGETLRANHLKILSDGVILRSQACLVRA 208 (228)
T ss_pred CCHHHHHHHHHHcCCceeEEEECCCceecccccCcchhhhhhhchhHHHHHCCCEEecCceEEEEEEEEEEe
Confidence 3789999999853 2 12222 2334588999999999999998886 787777655544
No 14
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=54.66 E-value=10 Score=28.21 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=39.2
Q ss_pred HHHHHHHHHhccCC-eEEEe---e---------cchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQHN-EVELS---A---------LGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~~-EVeLs---A---------lG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
.|.|++++|.++.+ .++|- | +-.||-..|.+-.-||.|||..+..|..|+-.+--+
T Consensus 73 kyp~l~~~yf~~~g~~~~ii~l~GsvE~ap~~glAD~IvDiv~TG~TLr~NgL~~i~~i~~s~a~LI~n 141 (163)
T PF01634_consen 73 KYPNLTRRYFAEKGINVEIIKLSGSVELAPPLGLADAIVDIVETGTTLRANGLKEIETILESSARLIAN 141 (163)
T ss_dssp S-HHHHHHHHHHCT-EEEEEE-SS-TTHHHHTTSSSEEEEEESSSHHHHHTTEEEEEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCcEEEEEccCCccccCCCCCCCEEEEeccCcHHHHHCCCEEeEEEEEEEEEEEEc
Confidence 48899999999754 44443 2 235566666677779999998888888887655433
No 15
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=54.47 E-value=17 Score=28.18 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=42.0
Q ss_pred HHHHHHHHHhccCC----------eEEE---eecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQHN----------EVEL---SALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~~----------EVeL---sAlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
.|.|++++|.++.+ -||+ -|+-.||...|.+-.-||.|||..+..|..|+..+--+
T Consensus 121 kYp~it~~yf~~~gv~~~iv~l~GsvE~aP~~GlAD~IvDivsTG~TLr~NgL~~ie~Il~s~A~LI~n 189 (215)
T PRK01686 121 KYPNIARRYFAEKGEQVEIIKLYGSVELAPLVGLADAIVDIVETGNTLRANGLVEVEEIMDISARLIVN 189 (215)
T ss_pred CCHHHHHHHHHHcCCeEEEEECcCceeeccccCCccEEEEeecChHHHHHCcCEEeeEEEeeEEEEEEe
Confidence 47899999998642 1222 12344688899999999999998888998888766654
No 16
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=49.87 E-value=14 Score=30.01 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=18.8
Q ss_pred HHHHHHhccCCeEEEeecchh
Q 034338 10 LSLQRYMQQHNEVELSALGMA 30 (97)
Q Consensus 10 ~lakqf~~~~~EVeLsAlG~A 30 (97)
.|||||++--++|.|+||-++
T Consensus 20 ~lak~f~elgN~VIi~gR~e~ 40 (245)
T COG3967 20 ALAKRFLELGNTVIICGRNEE 40 (245)
T ss_pred HHHHHHHHhCCEEEEecCcHH
Confidence 589999999999999999653
No 17
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=47.00 E-value=23 Score=28.78 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=27.0
Q ss_pred EEeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 23 eLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
.+|+||+-|..| .++-+||++|+ ++.-||.-.
T Consensus 9 v~s~lgkgi~~a-s~g~ll~~~g~~v~~~K~DpY 41 (255)
T cd03113 9 VVSSLGKGITAA-SLGRLLKARGLKVTAQKLDPY 41 (255)
T ss_pred cccCcchHHHHH-HHHHHHHHCCCeEEEEeeccc
Confidence 479999999755 78999999999 888888754
No 18
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=46.59 E-value=20 Score=29.42 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=24.9
Q ss_pred EeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 24 LSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 24 LsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
+|++|+-|.. -.++-+||++|+ ++.-||.-.
T Consensus 11 ~SglGKGi~a-aSig~lLk~~G~~V~~~K~DPY 42 (276)
T PF06418_consen 11 VSGLGKGITA-ASIGRLLKSRGYKVTMIKIDPY 42 (276)
T ss_dssp SSSSSHHHHH-HHHHHHHHCTT--EEEEEEE-S
T ss_pred cccccHHHHH-HHHHHHHHhCCeeeeeeeeccc
Confidence 6899999964 489999999999 999888764
No 19
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=42.34 E-value=26 Score=24.75 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHh--c-cCCeEEEeecchhhhHH
Q 034338 2 FDDLVAAYLSLQRYM--Q-QHNEVELSALGMAIATV 34 (97)
Q Consensus 2 ~~~~~~~~~lakqf~--~-~~~EVeLsAlG~AIS~a 34 (97)
+||||+..+.|.... + ..+.|.|+.+|+....+
T Consensus 11 iDdL~p~~eAaelLgf~~~~~Gdi~LT~~G~~f~~a 46 (120)
T PF09821_consen 11 IDDLLPIVEAAELLGFAEVEEGDIRLTPLGRRFAEA 46 (120)
T ss_pred HHHHHHHHHHHHHcCCeeecCCcEEeccchHHHHHC
Confidence 699999999886542 2 46899999999998765
No 20
>PTZ00061 DNA-directed RNA polymerase; Provisional
Probab=40.33 E-value=5.4 Score=31.35 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=33.3
Q ss_pred HHHHHHhhCCe-EEEEEEeeeeeeeccCCCCcccccceEEEEEeeecc
Q 034338 36 TIAEILKNNGL-AVEKKITTSTVDIREETGGRPVQKAKVNTLNIIHYK 82 (97)
Q Consensus 36 ~VAEILKn~~l-a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~~~ 82 (97)
|+.|||+.||+ +....+..+.++..+.-+..+...+++.|...+..+
T Consensus 14 Tv~eMl~DRGY~V~~~el~~s~~~F~~~~~~~~~~r~~l~~~~~~~~d 61 (205)
T PTZ00061 14 TCCEMLEDRGYIITSQEKLETFATFKERFEENERLRSRMLMVASHKTD 61 (205)
T ss_pred HHHHHHhccCCccCHHHHcCCHHHHHHHhccCcccHhHcEEEeecCCC
Confidence 78999999999 888888888887775442323334666666665544
No 21
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=38.91 E-value=49 Score=27.72 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=27.4
Q ss_pred ccCCeEEEeecchhhhHHHHHHHHHhhCCe
Q 034338 17 QQHNEVELSALGMAIATVVTIAEILKNNGL 46 (97)
Q Consensus 17 ~~~~EVeLsAlG~AIS~aV~VAEILKn~~l 46 (97)
+.-..+.|=|-|--.++|+..||+|+.+|+
T Consensus 190 rdG~D~tiiA~G~mv~~al~AA~~L~~~GI 219 (312)
T COG3958 190 RDGSDLTIIATGVMVAEALEAAEILKKEGI 219 (312)
T ss_pred ecCCceEEEecCcchHHHHHHHHHHHhcCC
Confidence 345788999999999999999999999999
No 22
>COG1360 MotB Flagellar motor protein [Cell motility and secretion]
Probab=37.23 E-value=52 Score=25.31 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=46.9
Q ss_pred HHHHHHhccCC-eEEEeec--------------chhhhHHHHHHHHHhhCCeEEEEEEee----eeeeeccCC--CCccc
Q 034338 10 LSLQRYMQQHN-EVELSAL--------------GMAIATVVTIAEILKNNGLAVEKKITT----STVDIREET--GGRPV 68 (97)
Q Consensus 10 ~lakqf~~~~~-EVeLsAl--------------G~AIS~aV~VAEILKn~~la~~KkI~T----sT~~i~~e~--rg~~v 68 (97)
.+|+......+ .|.|.|= .-.-+||..|++.|-+.|++.-+.+.. .|..+.+++ .||..
T Consensus 153 ~ia~~l~~~~~~~I~I~GHTDn~p~~~~~~sNWeLS~aRA~~v~~~L~~~g~~~~~~~~~~G~gd~~Pva~n~t~~~ra~ 232 (244)
T COG1360 153 KIAKLLADIPNGNIRIEGHTDNVPIKGSFYSNWELSAARAQSVVRVLINGGLVEAKRLSVVGYADTRPLADNDTAEGRAK 232 (244)
T ss_pred HHHHHHhhcCCCeEEEEeCCCCCCcCCCCCchHHHHHHHHHHHHHHHHHcCCCCcceEEEEecccccccCCCCChhhhhh
Confidence 45555555555 6666552 223479999999999999888777776 455555554 46664
Q ss_pred ccceEEEEEeee
Q 034338 69 QKAKVNTLNIIH 80 (97)
Q Consensus 69 ~kskIEIvL~k~ 80 (97)
| --|||.+...
T Consensus 233 N-RRVeI~i~~~ 243 (244)
T COG1360 233 N-RRVEILILTK 243 (244)
T ss_pred c-CeEEEEEecC
Confidence 3 5788887653
No 23
>PRK05380 pyrG CTP synthetase; Validated
Probab=35.07 E-value=39 Score=29.87 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=27.0
Q ss_pred EEeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 23 eLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
.+|+||+-|..| .++-+||++|+ ++.-||.-.
T Consensus 11 v~S~lGKGi~~a-s~g~ll~~~g~~v~~~K~DpY 43 (533)
T PRK05380 11 VVSSLGKGITAA-SLGRLLKARGLKVTIQKLDPY 43 (533)
T ss_pred cccCcchHHHHH-HHHHHHHhCCCceEEEeeccc
Confidence 479999999754 78999999999 988888653
No 24
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=35.02 E-value=26 Score=30.18 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhCCeEEEE-EEeeeeeeeccCCCCcccccceEEEEEeeecccccceeeEEEE
Q 034338 32 ATVVTIAEILKNNGLAVEK-KITTSTVDIREETGGRPVQKAKVNTLNIIHYKIRSNYDVEIHV 93 (97)
Q Consensus 32 S~aV~VAEILKn~~la~~K-kI~TsT~~i~~e~rg~~v~kskIEIvL~k~~~~~~~~~~~~~~ 93 (97)
.|.|+|-++|+++|+.... ++.+-.+- .++++|+= .=+.++.-.|-++++.+|+++|-.
T Consensus 283 lRIvnv~~~l~~~g~~~~~~e~~i~leV-ld~N~G~f--sL~~g~~~~kmT~~~~~~ei~idi 342 (389)
T COG4552 283 LRIVNVQAALEARGYPHEVGEFEIVLEV-LDENGGRF--SLKEGDGRAKMTETDAAAEIEIDI 342 (389)
T ss_pred EEEccHHHHHHhCCCCCcCcceEEEEEe-eccCCCeE--EeeccccccccccccccceeeeeH
Confidence 4889999999999994433 66666654 44445653 336777788889999999998854
No 25
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=34.64 E-value=90 Score=18.31 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=9.8
Q ss_pred chhhhHHHHHHHHHhhCCe
Q 034338 28 GMAIATVVTIAEILKNNGL 46 (97)
Q Consensus 28 G~AIS~aV~VAEILKn~~l 46 (97)
|+....| .++|++.||
T Consensus 8 g~~~~~a---~~~l~~~g~ 23 (63)
T PF03793_consen 8 GMTYDEA---KSILEAAGL 23 (63)
T ss_dssp TSBHHHH---HHHHHHTT-
T ss_pred CCcHHHH---HHHHHHCCC
Confidence 4555544 457888999
No 26
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=34.45 E-value=6.8 Score=30.74 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=33.9
Q ss_pred HHHHHHhhCCe-EEEEEEeeeeeeeccCCCCcccccceEEEEEeeecc
Q 034338 36 TIAEILKNNGL-AVEKKITTSTVDIREETGGRPVQKAKVNTLNIIHYK 82 (97)
Q Consensus 36 ~VAEILKn~~l-a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~~~ 82 (97)
|+.|||+.||+ +....|+.+.++....- |...+.+++.|...+..+
T Consensus 17 Tv~eMl~DRGY~V~~~el~~s~~~F~~~~-~~~~~r~~l~~~~~~~~d 63 (206)
T PLN03111 17 TVLEMLRDRGYLVSDSELNLTLSEFREKF-GEKPKREDLRISAPKRSD 63 (206)
T ss_pred HHHHHHhccCCccCHHHHcCCHHHHHHHH-cCCcCHHHcEeeeecCCC
Confidence 68999999999 88888888888777554 333356677776666554
No 27
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=33.43 E-value=69 Score=26.17 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=42.0
Q ss_pred CCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEeeeeeeeccCCCCcccccceEEEEEeeecc
Q 034338 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTSTVDIREETGGRPVQKAKVNTLNIIHYK 82 (97)
Q Consensus 19 ~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~~~ 82 (97)
-++|.|=|.|.....|..+||.|+++|+ +++-+..+-.. ++.+.--+.+++.+--|++.-|..
T Consensus 228 G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikP-lD~~~l~~~~~~t~~vvtvEE~~~ 291 (356)
T PLN02683 228 GKDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRP-LDRDTINASVRKTNRLVTVEEGWP 291 (356)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCc-cCHHHHHHHHhhcCeEEEEeCCCc
Confidence 4689999999999999999999999998 66655544321 222211223344444577776654
No 28
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=32.67 E-value=80 Score=25.40 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=41.2
Q ss_pred cCCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEeeeeeeeccCCCCcccccceEEEEEeeecc
Q 034338 18 QHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTSTVDIREETGGRPVQKAKVNTLNIIHYK 82 (97)
Q Consensus 18 ~~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~~~ 82 (97)
.-+++.|=|-|.....|..+||.|+.+|+ +.+-+..+=.. ++.+.--+++++.+--+++.-|+.
T Consensus 200 ~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikP-lD~~~i~~~~~~t~~vv~vEE~~~ 264 (327)
T CHL00144 200 PGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKP-LDLGTISKSVKKTHKVLIVEECMK 264 (327)
T ss_pred cCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCC-CCHHHHHHHHHhhCcEEEEECCCC
Confidence 34789999999999999999999999998 65555444321 222211223344444555665553
No 29
>PLN02790 transketolase
Probab=31.32 E-value=71 Score=28.15 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=29.5
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEe
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKIT 53 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~ 53 (97)
++|.|=|-|.-...|+.+|++|+.+|+ +.+-+..
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~ 575 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMV 575 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 689999999999999999999999998 5555444
No 30
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=30.82 E-value=90 Score=20.63 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=27.4
Q ss_pred eEEEeecchhhhHHH--HHHHHHhhCCe-EEEEEEeee
Q 034338 21 EVELSALGMAIATVV--TIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 21 EVeLsAlG~AIS~aV--~VAEILKn~~l-a~~KkI~Ts 55 (97)
-+...|-|.|-|.++ .+-++++++|+ +.+.....+
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~ 42 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHH
Confidence 467899999999996 45599999999 666664444
No 31
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=30.24 E-value=53 Score=29.01 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=27.0
Q ss_pred EEeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 23 eLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
.+|+||+-|..| .++-+||++|+ ++.-||.-.
T Consensus 10 v~s~lgkgi~~a-s~g~ll~~~g~~v~~~K~DpY 42 (525)
T TIGR00337 10 VVSSLGKGITAA-SIGRLLKARGLKVTIIKIDPY 42 (525)
T ss_pred cccCcchHHHHH-HHHHHHHhCCCceEEEeeccc
Confidence 479999999754 78999999999 888888654
No 32
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=29.28 E-value=82 Score=26.95 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=44.6
Q ss_pred hccCCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEeeeeeeeccCCCCcccccceEEEEEeeecc
Q 034338 16 MQQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTSTVDIREETGGRPVQKAKVNTLNIIHYK 82 (97)
Q Consensus 16 ~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~~~ 82 (97)
+++-.+|.|=|.|.....|...||.|+.+|+ +.+-+..|-.. ++.+.--+++.+.+--|++.-|..
T Consensus 337 ~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkP-lD~~~i~~sv~kt~~vvtvEE~~~ 403 (464)
T PRK11892 337 HREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRP-MDTETIVESVKKTNRLVTVEEGWP 403 (464)
T ss_pred EEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCc-CCHHHHHHHHHhcCeEEEEeCCCc
Confidence 3445789999999999999999999999998 77766665432 332221223334444466666664
No 33
>PRK12753 transketolase; Reviewed
Probab=29.08 E-value=77 Score=28.11 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=27.8
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEE
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKK 51 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~Kk 51 (97)
++|.|=|-|.-+..|+..||+|+++|+ +.+-.
T Consensus 550 ~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~ 582 (663)
T PRK12753 550 PDLILIATGSEVEITLQAAEKLTAEGRNVRVVS 582 (663)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 489999999999999999999999998 44433
No 34
>PF13680 DUF4152: Protein of unknown function (DUF4152)
Probab=27.92 E-value=32 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=25.3
Q ss_pred HHHHHHHhccCCeEEEeecchhhhHHHHHHHHH
Q 034338 9 YLSLQRYMQQHNEVELSALGMAIATVVTIAEIL 41 (97)
Q Consensus 9 ~~lakqf~~~~~EVeLsAlG~AIS~aV~VAEIL 41 (97)
--|||+|-++ .-++|-|.|+. |-+|.+|||-
T Consensus 117 QPLAkkfWEe-tgiEIlAIGK~-SVpVRIAEiy 147 (227)
T PF13680_consen 117 QPLAKKFWEE-TGIEILAIGKS-SVPVRIAEIY 147 (227)
T ss_pred HHHHHHHHHh-hCcEEEEeccc-ccceeHHHHH
Confidence 3589999987 45899999986 7788999884
No 35
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=27.89 E-value=96 Score=19.80 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=26.8
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCeEEE
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGLAVE 49 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~la~~ 49 (97)
--+.++|+|.-..+--.+|+-|..+|+++.
T Consensus 18 ~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~ 47 (79)
T PF12146_consen 18 VVVIVHGFGEHSGRYAHLAEFLAEQGYAVF 47 (79)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHhCCCEEE
Confidence 457889999999999999999999999665
No 36
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=27.20 E-value=1.3e+02 Score=24.15 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=43.0
Q ss_pred cCCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEeeeeeeeccCCCCcccccceEEEEEeeec
Q 034338 18 QHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTSTVDIREETGGRPVQKAKVNTLNIIHY 81 (97)
Q Consensus 18 ~~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~~ 81 (97)
+-.++.|=|.|.....|...||.|+++|+ +.+=.+.+--. ++.+.-.+.+++.+--|++..|.
T Consensus 200 ~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~P-ld~~~i~~~~~~~~~vv~vEe~~ 263 (327)
T PRK09212 200 EGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRP-LDTETIIESVKKTNRLVVVEEGW 263 (327)
T ss_pred eCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCC-CCHHHHHHHHHhCCeEEEEcCCC
Confidence 34689999999999999999999999998 66655555322 33222123344555556666666
No 37
>PF13155 Toprim_2: Toprim-like
Probab=26.30 E-value=1.5e+02 Score=18.51 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHhccCCeEEEeecchhhhHHHHHHHHHhhCCeEEEEEEeeeee
Q 034338 4 DLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTV 57 (97)
Q Consensus 4 ~~~~~~~lakqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~la~~KkI~TsT~ 57 (97)
|..++..+.++-.+... +.|++.|..... .+.+.|+++.. ++|-+.+.
T Consensus 8 DaLS~~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~l~~~~~---~~i~l~~D 55 (96)
T PF13155_consen 8 DALSYYQLGKENIKDNS-LSLAGGGTLSEK--QQIKFLKENPY---KKIVLAFD 55 (96)
T ss_pred HHHHHHHhCchhcCCce-EEEECCchHHHH--HHHHHHHhCCC---CcEEEEeC
Confidence 55566666655554444 889999987555 67888877666 77777665
No 38
>PLN02327 CTP synthase
Probab=25.60 E-value=64 Score=28.78 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=26.2
Q ss_pred EEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 23 eLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
.+|++|+-|..| .+.-+||++|+ ++.-||.-
T Consensus 10 V~S~lGKGi~~a-Sig~ll~~~g~~V~~~K~DP 41 (557)
T PLN02327 10 VVSGLGKGVTAS-SIGVLLKACGLRVTSIKIDP 41 (557)
T ss_pred cccCcchHHHHH-HHHHHHHHCCCceeeeeccc
Confidence 479999999755 78999999999 88888764
No 39
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=25.34 E-value=1.1e+02 Score=26.98 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 19 ~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
-++|.|=|-|.-...|..+||+|+.+|+ +.+-.+.+-
T Consensus 540 g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~i 577 (653)
T TIGR00232 540 GPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSF 577 (653)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccC
Confidence 4789999999999999999999999998 666555443
No 40
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=25.30 E-value=1.6e+02 Score=17.62 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=28.0
Q ss_pred hccCCeEEEeecchhhhHHHHHHHHHhhCCeEE
Q 034338 16 MQQHNEVELSALGMAIATVVTIAEILKNNGLAV 48 (97)
Q Consensus 16 ~~~~~EVeLsAlG~AIS~aV~VAEILKn~~la~ 48 (97)
....+.|.|+|....-..+.+-.+-|++..+..
T Consensus 20 ~~~~~~l~i~G~a~~~~~v~~f~~~L~~~~~f~ 52 (78)
T PF05137_consen 20 SINGNTLSISGYADSYQSVAAFLRNLEQSPFFS 52 (78)
T ss_pred EEeCCEEEEEEEECCHHHHHHHHHHHhhCCCcc
Confidence 345679999999999999999999999888854
No 41
>PF03871 RNA_pol_Rpb5_N: RNA polymerase Rpb5, N-terminal domain; InterPro: IPR005571 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region, plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) (IPR000783 from INTERPRO) [, , , ]. This entry represents the N-terminal domain of eukaryotic RPB5, which has a core structure consisting of 3 layers alpha/beta/alpha []. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA pol II structure []. This module is important for positioning the downstream DNA.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 3H0G_Q 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E 1I50_E ....
Probab=23.32 E-value=3.4 Score=27.84 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=26.7
Q ss_pred HHHHHHhhCCe-EEEEEEeeeeeeeccCCCCc---ccccceEEEEEeeecc
Q 034338 36 TIAEILKNNGL-AVEKKITTSTVDIREETGGR---PVQKAKVNTLNIIHYK 82 (97)
Q Consensus 36 ~VAEILKn~~l-a~~KkI~TsT~~i~~e~rg~---~v~kskIEIvL~k~~~ 82 (97)
|+.|+|+.||+ +....+..+.++...-- |. ..+..++.|...++.+
T Consensus 16 Tv~eMl~DRGY~V~~~el~~s~~~F~~~~-~~~~~~~~r~~L~~~~~~~~d 65 (93)
T PF03871_consen 16 TVMEMLRDRGYLVSEEELNMSLEEFKEKY-GENPGNPDRERLTISASKRDD 65 (93)
T ss_dssp CCCCCCCCCTEE--CCCCS--HHHHHHHC-B-SSSSB-GCCT-EEEEESCH
T ss_pred HHHHHHhcCCCccChhhhcCCHHHHHHHH-cccCCCCCHHHeeeeccCCCC
Confidence 46799999999 88888888877665333 22 3356677777665543
No 42
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=23.09 E-value=33 Score=19.78 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=18.3
Q ss_pred EEEeecchhh---hHHHHHHHHHhhCCe
Q 034338 22 VELSALGMAI---ATVVTIAEILKNNGL 46 (97)
Q Consensus 22 VeLsAlG~AI---S~aV~VAEILKn~~l 46 (97)
|.|++=|+.. ..+-+|+|+|+.+|+
T Consensus 2 Vtv~~dG~~~~v~T~a~tV~~~L~~~gI 29 (43)
T PF03990_consen 2 VTVTVDGKEKTVYTTASTVGDALKELGI 29 (43)
T ss_pred EEEEECCEEEEEEeCCCCHHHHHHhCCC
Confidence 4555555543 567899999999997
No 43
>PTZ00089 transketolase; Provisional
Probab=22.62 E-value=1.2e+02 Score=26.86 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=29.2
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
++|.|=|.|.-+..|..+||.|++ |+ +.+-+..+
T Consensus 549 ~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ 583 (661)
T PTZ00089 549 PQLILVASGSEVSLCVEAAKALSK-ELNVRVVSMPC 583 (661)
T ss_pred CCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEeCCC
Confidence 689999999999999999999999 98 66555444
No 44
>PRK05899 transketolase; Reviewed
Probab=22.44 E-value=1.3e+02 Score=26.02 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 19 ~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
-++|.|=|.|.-...|..+||.|+++|+ +.+-.+.+
T Consensus 510 G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~s 546 (624)
T PRK05899 510 DPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPS 546 (624)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 4789999999999999999999999997 65555544
No 45
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=22.31 E-value=1.1e+02 Score=27.96 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=32.1
Q ss_pred hccCCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEe
Q 034338 16 MQQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKIT 53 (97)
Q Consensus 16 ~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~ 53 (97)
+++-++|-|=|.|.-.+.|-.+||-|.++|+ +|+-+-+
T Consensus 498 ~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~r 536 (627)
T COG1154 498 LKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPR 536 (627)
T ss_pred EecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCe
Confidence 3456889999999999999999999999999 6665443
No 46
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=21.20 E-value=1.3e+02 Score=27.50 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=29.0
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEE
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKI 52 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI 52 (97)
++|.|=|-|-+...+...||.|..+|+ +++-.-
T Consensus 506 ~dV~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~ 539 (632)
T KOG0523|consen 506 PDVILIGTGSEVQECLEAAELLSEDGIKVRVVDP 539 (632)
T ss_pred CCEEEEeccHHHHHHHHHHHHHHhcCceEEEecc
Confidence 599999999999999999999999998 655443
No 47
>PRK12754 transketolase; Reviewed
Probab=20.22 E-value=1.4e+02 Score=26.79 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=29.4
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
++|.|=|-|.-...|+.+|+.|+.+|+ +.+-..-+
T Consensus 550 ~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s 585 (663)
T PRK12754 550 PELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPS 585 (663)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCc
Confidence 389999999999999999999999998 55544433
Done!