Query 034338
Match_columns 97
No_of_seqs 85 out of 87
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 21:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vm0_A Unknown protein; struct 100.0 2.3E-32 7.9E-37 196.8 8.3 85 4-88 31-115 (130)
2 1nfj_A ALBA, conserved hypothe 99.9 1.9E-23 6.5E-28 140.6 9.3 74 5-79 13-89 (89)
3 1nh9_A MJA10B, DNA-binding pro 99.9 5E-23 1.7E-27 138.0 8.5 73 5-79 12-87 (87)
4 2bky_A DNA/RNA-binding protein 99.9 9.2E-23 3.1E-27 139.4 9.6 74 5-79 19-96 (97)
5 3toe_A MTH10B, DNA/RNA-binding 99.9 1.3E-21 4.3E-26 133.6 8.9 70 10-80 20-91 (91)
6 2h9u_A DNA/RNA-binding protein 99.9 1.3E-21 4.5E-26 134.8 8.7 77 5-82 16-100 (102)
7 2bky_X DNA/RNA-binding protein 99.8 1.9E-20 6.5E-25 126.5 8.4 71 5-81 16-89 (89)
8 3iab_B Ribonucleases P/MRP pro 97.5 0.00017 5.7E-09 52.4 5.6 44 18-62 59-102 (140)
9 3iab_A Ribonucleases P/MRP pro 79.2 6.4 0.00022 29.0 6.5 66 17-86 74-151 (158)
10 1ve4_A ATP phosphoribosyltrans 64.4 0.57 1.9E-05 35.1 -2.1 56 7-62 114-182 (206)
11 1o63_A ATP phosphoribosyltrans 63.1 2.9 0.0001 31.6 1.6 56 7-62 109-177 (219)
12 1z7m_E ATP phosphoribosyltrans 62.8 2.6 8.8E-05 31.5 1.2 55 7-61 116-183 (208)
13 1h3d_A ATP-phosphoribosyltrans 55.6 1.1 3.7E-05 35.2 -2.0 56 7-62 130-198 (299)
14 2vo1_A CTP synthase 1; pyrimid 55.1 8.2 0.00028 30.8 2.9 40 15-55 19-64 (295)
15 1nh8_A ATP phosphoribosyltrans 54.2 3.1 0.00011 32.9 0.4 56 7-62 135-204 (304)
16 2vd3_A ATP phosphoribosyltrans 51.6 5 0.00017 31.4 1.2 56 7-62 121-189 (289)
17 3ju3_A Probable 2-oxoacid ferr 51.5 23 0.00078 23.1 4.3 38 18-55 12-50 (118)
18 2vd2_A ATP phosphoribosyltrans 44.9 2.8 9.6E-05 31.5 -1.2 56 7-62 118-186 (214)
19 2c5m_A CTP synthase; cytidine 43.6 9.9 0.00034 30.4 1.7 31 24-55 33-64 (294)
20 3nva_A CTP synthase; rossman f 42.8 14 0.00048 31.3 2.7 32 23-55 12-44 (535)
21 1umd_B E1-beta, 2-OXO acid deh 38.3 44 0.0015 24.9 4.5 36 19-54 202-238 (324)
22 2e6k_A Transketolase; structur 33.2 43 0.0015 27.9 4.1 35 20-54 542-577 (651)
23 1w85_B Pyruvate dehydrogenase 31.8 57 0.002 24.4 4.3 36 19-54 201-237 (324)
24 3l84_A Transketolase; TKT, str 31.7 52 0.0018 27.7 4.4 36 19-54 525-561 (632)
25 3rim_A Transketolase, TK; TPP, 31.4 48 0.0016 28.4 4.2 34 21-54 586-620 (700)
26 2r8o_A Transketolase 1, TK 1; 30.5 44 0.0015 27.9 3.7 36 20-55 550-586 (669)
27 1itz_A Transketolase; calvin c 30.0 56 0.0019 27.4 4.3 35 20-54 563-598 (675)
28 1gpu_A Transketolase; transfer 28.7 56 0.0019 27.4 4.1 35 20-54 555-590 (680)
29 3mos_A Transketolase, TK; thia 28.6 64 0.0022 26.8 4.3 62 21-83 500-563 (616)
30 3m49_A Transketolase; alpha-be 28.5 56 0.0019 27.8 4.1 34 21-54 578-612 (690)
31 3uk1_A Transketolase; structur 27.2 65 0.0022 27.6 4.3 35 20-54 598-633 (711)
32 2ozl_B PDHE1-B, pyruvate dehyd 24.4 93 0.0032 23.6 4.3 36 19-54 216-252 (341)
33 2bfd_B 2-oxoisovalerate dehydr 22.4 85 0.0029 23.8 3.7 36 19-54 219-256 (342)
34 3kom_A Transketolase; rossmann 22.0 61 0.0021 27.4 3.1 36 19-54 549-585 (663)
No 1
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.97 E-value=2.3e-32 Score=196.84 Aligned_cols=85 Identities=58% Similarity=0.706 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHhccCCeEEEeecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccCCCCcccccceEEEEEeeeccc
Q 034338 4 DLVAAYLSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKVNTLNIIHYKI 83 (97)
Q Consensus 4 ~~~~~~~lakqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~~~~ 83 (97)
.+|.|+++|++|+++++||+|||||+|||+||+||||||||||+++|+|.|||++++++.+||++|+|||||+|.|+++|
T Consensus 31 P~~nYV~~a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~~~~r~v~~skIEI~L~k~~~f 110 (130)
T 1vm0_A 31 PLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKAKIEITLVKSEKF 110 (130)
T ss_dssp CHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEEEEEEEEEEEECTTH
T ss_pred CceeHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccCCCCcccccceEEEEEEecCcH
Confidence 46899999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cccee
Q 034338 84 RSNYD 88 (97)
Q Consensus 84 ~~~~~ 88 (97)
++.|.
T Consensus 111 d~~~~ 115 (130)
T 1vm0_A 111 DELMA 115 (130)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99873
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.90 E-value=1.9e-23 Score=140.57 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=67.1
Q ss_pred HHHHHHHH-HHHhccCCeEEEeecchhhhHHHHHHHHHhhCCe--EEEEEEeeeeeeeccCCCCcccccceEEEEEee
Q 034338 5 LVAAYLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKVNTLNII 79 (97)
Q Consensus 5 ~~~~~~la-kqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l--a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k 79 (97)
++.|...| ++|+++++||.|||+|+|||+||+||||||||++ +.+++|+|||+++++++ |++.++|+|||+|.|
T Consensus 13 v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e~-g~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 13 VMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESEQ-GRRSNVSTIEIVLAK 89 (89)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCBT-TBCCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcCC-CcEEEeeEEEEEEEC
Confidence 56777777 5666779999999999999999999999999998 78899999999999986 888899999999985
No 3
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.89 E-value=5e-23 Score=138.04 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=59.9
Q ss_pred HHHHHHHH-HHHhccCCeEEEeecchhhhHHHHHHHHHhhCCe--EEEEEEeeeeeeeccCCCCcccccceEEEEEee
Q 034338 5 LVAAYLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKVNTLNII 79 (97)
Q Consensus 5 ~~~~~~la-kqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l--a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k 79 (97)
++.|...| ++|+++ +||.|||+|+|||+||+||||||||++ +.+++|+|||+++.+++ |++.++|+|||+|.|
T Consensus 12 v~~YV~~~~~~l~~g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e~-g~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 12 VMNYVVAVLTQLTSN-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNPD-GREVNVSTIEIVLAK 87 (87)
T ss_dssp HHHHHHHHHHHHHHC-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCEEEEEEEEEC
T ss_pred hHHHHHHHHHHhcCC-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcCC-CcEEEeeEEEEEEEC
Confidence 56677766 677777 999999999999999999999999998 78899999999999986 888899999999975
No 4
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.88 E-value=9.2e-23 Score=139.38 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=66.9
Q ss_pred HHHHHHHH-HHHhccCCeEEEeecchhhhHHHHHHHHHhhCCe---EEEEEEeeeeeeeccCCCCcccccceEEEEEee
Q 034338 5 LVAAYLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGL---AVEKKITTSTVDIREETGGRPVQKAKVNTLNII 79 (97)
Q Consensus 5 ~~~~~~la-kqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l---a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k 79 (97)
++.|...| ++|+++++||.|||+|+|||+||+||||||||++ +.+++|.|||+++.+|+ |++.++|.|||+|.|
T Consensus 19 v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e~-G~~r~vS~IeI~L~k 96 (97)
T 2bky_A 19 VMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQD-GRQSRVSTIEIAIRK 96 (97)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEETT-SCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecCC-CcEEEeeEEEEEEEc
Confidence 56777777 6777779999999999999999999999999998 66899999999999986 888899999999986
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.86 E-value=1.3e-21 Score=133.58 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=64.3
Q ss_pred HHHHHHhccCCeEEEeecchhhhHHHHHHHHHhhCCe--EEEEEEeeeeeeeccCCCCcccccceEEEEEeee
Q 034338 10 LSLQRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKVNTLNIIH 80 (97)
Q Consensus 10 ~lakqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l--a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~ 80 (97)
..-++|++|++||.|||+|+|||+|||||||+|+|++ +.+++|.++|+.+++++ |+..++|.|||+|+|.
T Consensus 20 ~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~e~-G~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 20 AVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIGNE-GTATNVSAIEIQLRKD 91 (91)
T ss_dssp HHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECTT-SSEEEEEEEEEEEEC-
T ss_pred HHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeecCC-CceeEeeEEEEEEECC
Confidence 3457888899999999999999999999999999999 99999999999999886 8888999999999873
No 6
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.86 E-value=1.3e-21 Score=134.78 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=68.6
Q ss_pred HHHHHHHH--HHHhccCCeEEEeecchhhhHHHHHHHHHhhCCe--EEEEEEeeeeeeeccC--CCCc--ccccceEEEE
Q 034338 5 LVAAYLSL--QRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREE--TGGR--PVQKAKVNTL 76 (97)
Q Consensus 5 ~~~~~~la--kqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l--a~~KkI~TsT~~i~~e--~rg~--~v~kskIEIv 76 (97)
.+.|...+ ++|+++++||.|||+|+|||+||+||||||||++ +.+++|++||+++.++ + |+ ..++|+|||+
T Consensus 16 ~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~-g~~~~r~vS~IeI~ 94 (102)
T 2h9u_A 16 VMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPE-GQTRTRRVSSIEIC 94 (102)
T ss_dssp HHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTT-SCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccC-CccceeEeeeEEEE
Confidence 36677766 4777889999999999999999999999999998 8889999999999987 5 76 6789999999
Q ss_pred Eeeecc
Q 034338 77 NIIHYK 82 (97)
Q Consensus 77 L~k~~~ 82 (97)
|.|.|+
T Consensus 95 Lsk~~~ 100 (102)
T 2h9u_A 95 LEKAGE 100 (102)
T ss_dssp EEECSS
T ss_pred EEccCC
Confidence 999875
No 7
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.83 E-value=1.9e-20 Score=126.54 Aligned_cols=71 Identities=17% Similarity=0.067 Sum_probs=61.5
Q ss_pred HHHHHHHH-HHHhccCCeEEEeecchhhhHHHHHHHHHhhCCe--EEEEEEeeeeeeeccCCCCcccccceEEEEEeeec
Q 034338 5 LVAAYLSL-QRYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPVQKAKVNTLNIIHY 81 (97)
Q Consensus 5 ~~~~~~la-kqf~~~~~EVeLsAlG~AIS~aV~VAEILKn~~l--a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~~ 81 (97)
+..|..-+ ++|+++.+||.|||+|+|||+|||||||+|+|++ +.+++|.++|++ |+..++|.|||+|.|.|
T Consensus 16 v~nYV~~~~~~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~------~~~r~VS~IeI~L~k~~ 89 (89)
T 2bky_X 16 VEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RDRRRISYILLRLKRVY 89 (89)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ETTEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc------CcceEeeeEEEEEEecC
Confidence 34555555 8999999999999999999999999999999999 999999999986 33446889999999864
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00017 Score=52.43 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=36.2
Q ss_pred cCCeEEEeecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 18 QHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 18 ~~~EVeLsAlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
+..||.|+|+|+||.+|+.+|=-++.++=..+ .|+|||+++-||
T Consensus 59 ~~~eV~v~GmGkAIeKal~lAl~fq~~~~~~V-~V~T~TV~vvDd 102 (140)
T 3iab_B 59 GSSYVAVLGMGKAVEKTLALGCHFQDQKNKKI-EVYTKTIEVLDE 102 (140)
T ss_dssp TCSEEEEEEEGGGHHHHHHHHHHHHHTTCCCE-EEEEEEEEEEEE
T ss_pred CCcEEEEEechHHHHHHHHHHHHHhhcCCEEE-EEEeceEEEEEe
Confidence 68999999999999999999999999754222 488998766543
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=79.23 E-value=6.4 Score=28.95 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=41.3
Q ss_pred ccCCeEEEeecchhhhHHHHHHHHHhhCC------e------EEEEEEeeeeeeeccCCCCcccccceEEEEEeeecccc
Q 034338 17 QQHNEVELSALGMAIATVVTIAEILKNNG------L------AVEKKITTSTVDIREETGGRPVQKAKVNTLNIIHYKIR 84 (97)
Q Consensus 17 ~~~~EVeLsAlG~AIS~aV~VAEILKn~~------l------a~~KkI~TsT~~i~~e~rg~~v~kskIEIvL~k~~~~~ 84 (97)
.+.+-|-|.|.|..|.+++++.||+|.+- + .....+.-+.-++- .+.++++-+-+++..+..++
T Consensus 74 ~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~grNELl----e~r~~vPILi~~i~~~~~~~ 149 (158)
T 3iab_A 74 GLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKREGRNELQ----EERLKVPILVTMVSDSEIID 149 (158)
T ss_dssp TCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-------C----CCCEEEEEEEEEEESSSSCC
T ss_pred ccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCccccHHH----HhhcCCCEEEEEEecccccc
Confidence 56788999999999999999999999832 3 22323333332222 23456666667777776555
Q ss_pred cc
Q 034338 85 SN 86 (97)
Q Consensus 85 ~~ 86 (97)
=|
T Consensus 150 l~ 151 (158)
T 3iab_A 150 LN 151 (158)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 10
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=64.43 E-value=0.57 Score=35.11 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccCC-eEEE---e---------ecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQHN-EVEL---S---------ALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~~-EVeL---s---------AlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
.|.|++++|.++.+ .+++ . |+-.||...|.+-.-||.|||..+..|..|+-.+--+
T Consensus 114 kyp~l~~~yf~~~gi~~~ii~l~GsvE~ap~~GlAD~IvDivsTG~TLraNgL~~ie~I~~ssA~LI~n 182 (206)
T 1ve4_A 114 KYPNFTARLLKERGWAADVVELSGNIELAAVTGLADAVVDVVQTGATLRAAGLVEVEVLAHSTARLVVN 182 (206)
T ss_dssp SCHHHHHHHHHHTTCCCEEEECSSCTHHHHHTTSSSEEEEEESSSHHHHHTTCEEEEEEEEECEEEEEC
T ss_pred CchHHHHHHHHHCCCcEEEEECCCceeeccCCCCceEEEEeccCHHHHHHCCCEEeEEEEeeEEEEEEc
Confidence 37899999997532 2222 2 4556788888899999999998888888887655533
No 11
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=63.13 E-value=2.9 Score=31.64 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=41.6
Q ss_pred HHHHHHHHHhccC-CeEEEe------------ecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQH-NEVELS------------ALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~-~EVeLs------------AlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
.|.||+++|.++. -.++|- |+-.||...|.+-.-||.|||..+..|..|+-.+--+
T Consensus 109 kyp~l~r~yf~~~Gi~~~Ii~l~GsvE~aP~~GlADaIvDivsTG~TLraNgL~~ie~I~~SsA~LI~n 177 (219)
T 1o63_A 109 KFPNVTQRYCESKGWHCRIIPLKGSVELAPIAGLSDLIVDITETGRTLKENNLEILDEIFVIRTHVVVN 177 (219)
T ss_dssp SCHHHHHHHHHHHTCCEEEEECSSCTTHHHHHTSCSEEEEEESSSHHHHHTTEEEEEEEEEEEEEEEEC
T ss_pred CcHHHHHHHHHHCCCceEEEECCCceeeccCCCCcceeEEeeccHHHHHHCCCEEeeEEeeeEEEEEEC
Confidence 3789999999742 224443 4556788888889999999998888888887765533
No 12
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=62.84 E-value=2.6 Score=31.46 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccCC-eEEEe------------ecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeecc
Q 034338 7 AAYLSLQRYMQQHN-EVELS------------ALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIRE 61 (97)
Q Consensus 7 ~~~~lakqf~~~~~-EVeLs------------AlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~ 61 (97)
.|.|++++|.++.+ .++|- |+-.||...|.+-.-||.|||..+..|..|+-.+--
T Consensus 116 kyp~l~~~yf~~~gi~~~ii~l~GsvE~ap~~GlAD~IvDivsTG~TLr~NgL~~ie~I~~ssA~LI~ 183 (208)
T 1z7m_E 116 KYPRVTKKYFAQKQEDIEIIKLEGSVELGPVVGLADAIVDIVETGNTLSANGLEVIEKISDISTRMIV 183 (208)
T ss_dssp SCHHHHHHHHHHTTCCEEEEECSSCTTHHHHTTSCSEEEEEESSSHHHHTTTCEEEEEEEECCEEEEE
T ss_pred CchHHHHHHHHHcCCceEEEECCCceeeccCCCcccEEEEEeCChHHHHHCCCEEeEEEEeeEEEEEE
Confidence 47899999997532 34443 455678888899999999999888888888765543
No 13
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=55.55 E-value=1.1 Score=35.21 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccC----CeEEEe---------ecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQH----NEVELS---------ALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~----~EVeLs---------AlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
.|.||+++|.++. .-|.+. |+-.||...|.+-.-||.|||..+..|..|+-.+--+
T Consensus 130 kyp~l~~~yf~~~gi~~~ii~l~GsvE~aP~~GlADaIvDivsTG~TLraNgL~~ie~I~~SsA~LI~n 198 (299)
T 1h3d_A 130 SYPHLLKRYLDQKGISFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQR 198 (299)
T ss_dssp SCHHHHHHHHHHHTCCCEEEECSSCTTHHHHTTSCSEEEEEESSCHHHHHTTEEEEEEEEEECEEEEEE
T ss_pred CcHHHHHHHHHHcCCcEEEEECCCceeeccCCCccceEEecccCHHHHHHCCCEEeEEEEeeEEEEEEe
Confidence 4789999999752 222222 3456788888888899999998888888887755544
No 14
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=55.06 E-value=8.2 Score=30.84 Aligned_cols=40 Identities=30% Similarity=0.457 Sum_probs=29.8
Q ss_pred HhccCCeEEE-----eecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 15 YMQQHNEVEL-----SALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 15 f~~~~~EVeL-----sAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
|+...+-|-+ |+||+-|..| .++-+||++|+ ++.-||.-.
T Consensus 19 ~~~~~KyIfVTGGVvS~lGKGi~aa-Slg~lLk~~G~~Vt~~K~DPY 64 (295)
T 2vo1_A 19 YFQSMKYILVTGGVISGIGKGIIAS-SVGTILKSCGLHVTSIKIDPY 64 (295)
T ss_dssp --CCCEEEEEEECSSSSSSHHHHHH-HHHHHHHHTTCCEEEEEEECS
T ss_pred ccccceEEEEcCCcccccccHHHHH-HHHHHHHHCCCcceeeecccc
Confidence 4455566655 4599999755 69999999999 999888653
No 15
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=54.19 E-value=3.1 Score=32.89 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccCC-eEEE------------eecchhhhHHHHHHHHHhhCCeEEE-EEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQHN-EVEL------------SALGMAIATVVTIAEILKNNGLAVE-KKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~~-EVeL------------sAlG~AIS~aV~VAEILKn~~la~~-KkI~TsT~~i~~e 62 (97)
.|.||+++|.++.+ .++| -|+-.||...|.+-.-||.|||..+ ..|..|+-.+--+
T Consensus 135 kYp~l~r~yf~~~gi~~~Ii~l~GsvE~aP~~GlADaIvDiVsTG~TLraNgL~~i~e~I~~SsA~LI~n 204 (304)
T 1nh8_A 135 AYPNLVRKDLATKGIEATVIRLDGAVEISVQLGVADAIADVVGSGRTLSQHDLVAFGEPLCDSEAVLIER 204 (304)
T ss_dssp SCHHHHHHHHHHHTCCCEEEECSSCCTHHHHTTSCSEEEEEESSSHHHHHTTEEEEEEEEEEECEEEEEE
T ss_pred CcHHHHHHHHHHCCCeEEEEECCCceeeccCCCcccEEEEEeCChHHHHHCcCEEcccEEEEEEEEEEEc
Confidence 47899999997521 2333 3466778888999999999999888 8888877655543
No 16
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=51.62 E-value=5 Score=31.37 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=42.0
Q ss_pred HHHHHHHHHhccCC-eEE---Ee---------ecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQHN-EVE---LS---------ALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~~-EVe---Ls---------AlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
.|.|++++|.++.+ .++ +. |+-.||...|.+-.-||.|||..+..|..|+-.+--+
T Consensus 121 kyp~l~~~yf~~~gi~~~ii~l~GsvE~ap~~GlADaIvDivsTG~TLraNgL~~ie~I~~ssA~LI~n 189 (289)
T 2vd3_A 121 EFPGITENYLREHGIDAEVVELTGSTEIAPFIGVADLITDLSSTGTTLRMNHLRVIDTILESSVKLIAN 189 (289)
T ss_dssp SCHHHHHHHHHHTTCCCEEEECSSCGGGTTTTTSCSEEEEEESSTHHHHHTTEEEEEEEEEECEEEEEC
T ss_pred CcHHHHHHHHHHcCCcEEEEECCCceeeccCCCcccEEEEEeCChHHHHHCCCEEeEEEEeeEEEEEEc
Confidence 47899999997532 223 32 3666788888999999999998889998887655533
No 17
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=51.52 E-value=23 Score=23.11 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=31.7
Q ss_pred cCCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 18 QHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 18 ~~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
+-.++.|=|.|.....|..+++.|+.+|+ +.+=++++-
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~ 50 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMF 50 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeE
Confidence 34678899999999999999999999998 666666553
No 18
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=44.87 E-value=2.8 Score=31.49 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=40.7
Q ss_pred HHHHHHHHHhccC-CeEEEe------------ecchhhhHHHHHHHHHhhCCeEEEEEEeeeeeeeccC
Q 034338 7 AAYLSLQRYMQQH-NEVELS------------ALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 62 (97)
Q Consensus 7 ~~~~lakqf~~~~-~EVeLs------------AlG~AIS~aV~VAEILKn~~la~~KkI~TsT~~i~~e 62 (97)
.|.|++++|.++. -.++|- |+-.||...|.+-.-||.|||..+..|..|+-.+--+
T Consensus 118 kyp~l~~~yf~~~gi~~~ii~l~GsvE~aP~~GlADaIvDivsTG~TLraNgL~~ie~I~~ssA~LI~n 186 (214)
T 2vd2_A 118 KYPNVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVSTGQTLKENGLVETEHICDITSRFIVN 186 (214)
T ss_dssp SCHHHHHHHHHHHCCCCEEEECCSCTTHHHHTTSCSEEEEEECCSSSSCTTSCEEEEEEEECCCEEEEC
T ss_pred CcHHHHHHHHHHcCCcEEEEECCCceeeccCCCCceEEEEEeCCHHHHHHCCCEEeEEEEeeEEEEEEc
Confidence 3789999999742 123332 4556788888888999999998888888877655533
No 19
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=43.58 E-value=9.9 Score=30.41 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=25.9
Q ss_pred EeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 24 LSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 24 LsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
+|++|+-|.. -.++-+||++|+ ++.-||.-.
T Consensus 33 vSglGKGi~a-aSlG~LLk~rG~~Vt~~KiDPY 64 (294)
T 2c5m_A 33 ISGIGKGIIA-SSVGTILKSCGLHVTSIKIDPY 64 (294)
T ss_dssp STTSCHHHHH-HHHHHHHHTTTCCEECCEEECB
T ss_pred ccccchHHHH-HHHHHHHHHCCCeeEEEecCCc
Confidence 3789999964 489999999999 888888754
No 20
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=42.77 E-value=14 Score=31.30 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=26.8
Q ss_pred EEeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 23 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 23 eLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
.+|+||+-|.. -+++-+||++|+ ++.-||.-.
T Consensus 12 v~s~lgkgi~~-as~g~ll~~~g~~v~~~k~dpy 44 (535)
T 3nva_A 12 VLSSVGKGTLV-ASIGMLLKRRGYNVTAVKIDPY 44 (535)
T ss_dssp CSTTTTHHHHH-HHHHHHHHHTTCCEEEEEEECS
T ss_pred cccCcchHHHH-HHHHHHHHHCCceEEEEecCcc
Confidence 36899999964 589999999999 999988754
No 21
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=38.31 E-value=44 Score=24.94 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=30.6
Q ss_pred CCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 19 ~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
-.+|.|=|-|.....|...||.|+.+|+ +.+-++.+
T Consensus 202 g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 238 (324)
T 1umd_B 202 GKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT 238 (324)
T ss_dssp CSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence 3689999999999999999999999998 66655554
No 22
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=33.15 E-value=43 Score=27.89 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=31.2
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
.+|.|=|-|.....|+.+||.|+.+|+ +.+-++.+
T Consensus 542 ~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~ 577 (651)
T 2e6k_A 542 PQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPS 577 (651)
T ss_dssp CSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCc
Confidence 689999999999999999999999998 77766655
No 23
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=31.81 E-value=57 Score=24.36 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.4
Q ss_pred CCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 19 ~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
-.+|.|=|-|.....|..+||.|+.+|+ +.+-++.+
T Consensus 201 g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 201 GKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp CSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 3678999999999999999999999998 66655554
No 24
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=31.71 E-value=52 Score=27.68 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=31.6
Q ss_pred CCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 19 ~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
-++|.|=|-|.-...|+..||.|+.+|+ +.+-+..+
T Consensus 525 g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~ 561 (632)
T 3l84_A 525 EAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPC 561 (632)
T ss_dssp TCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSB
T ss_pred CCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCc
Confidence 4689999999999999999999999999 77766655
No 25
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=31.41 E-value=48 Score=28.40 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=30.7
Q ss_pred eEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 21 EVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 21 EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
+|.|=|-|.-...|+.+||.|+.+|+ +.+-+..+
T Consensus 586 dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~ 620 (700)
T 3rim_A 586 DVILIATGSEVQLAVAAQTLLADNDILARVVSMPC 620 (700)
T ss_dssp SEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred CEEEEEechHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 89999999999999999999999998 77766664
No 26
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=30.46 E-value=44 Score=27.94 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=31.6
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEeee
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 55 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~Ts 55 (97)
++|.|=|-|.....|+..||.|+.+|+ +.+-++.+-
T Consensus 550 ~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~ 586 (669)
T 2r8o_A 550 PELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPST 586 (669)
T ss_dssp CSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECSCH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhcCCCeEEEEeccC
Confidence 789999999999999999999999998 777666553
No 27
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=30.03 E-value=56 Score=27.38 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=31.2
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
.+|.|=|-|.....|+..||.|+.+|+ +.+-++.+
T Consensus 563 ~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vv~~~~ 598 (675)
T 1itz_A 563 PDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVS 598 (675)
T ss_dssp CSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 689999999999999999999999998 77766655
No 28
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=28.73 E-value=56 Score=27.42 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=31.2
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
.+|.|=|-|.-...|+..||.|+.+|+ +.+-+..+
T Consensus 555 ~dvtiva~G~~v~~al~Aa~~L~~~Gi~~~Vvd~~~ 590 (680)
T 1gpu_A 555 PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPD 590 (680)
T ss_dssp CSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred CCEEEEEEcHHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 689999999999999999999999998 77766655
No 29
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=28.56 E-value=64 Score=26.78 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=42.5
Q ss_pred eEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEeeeeeeeccCCCCcccccc-eEEEEEeeeccc
Q 034338 21 EVELSALGMAIATVVTIAEILKNNGL-AVEKKITTSTVDIREETGGRPVQKA-KVNTLNIIHYKI 83 (97)
Q Consensus 21 EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~TsT~~i~~e~rg~~v~ks-kIEIvL~k~~~~ 83 (97)
+|.|=|.|.....|..+||.|+.+|+ +.+-+++|-.. ++.+.--+.+.+. +--|++..|..+
T Consensus 500 dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~P-lD~e~i~~~~~~~~~~vvvvEe~~~~ 563 (616)
T 3mos_A 500 QVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKP-LDRKLILDSARATKGRILTVEDHYYE 563 (616)
T ss_dssp EEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEES-CCHHHHHHHHHHTTTEEEEEEEEEST
T ss_pred CEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCC-CCHHHHHHHHHhcCCEEEEEcCCCCC
Confidence 59999999999999999999999998 77766665433 2222111233343 455677776543
No 30
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=28.48 E-value=56 Score=27.82 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.4
Q ss_pred eEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 21 EVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 21 EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
+|.|=|-|.-...|+.+||.|+.+|+ +.+-+..+
T Consensus 578 dvtiia~G~~v~~Al~Aa~~L~~~GI~~~Vid~~~ 612 (690)
T 3m49_A 578 DVILLATGSEVSLAVEAQKALAVDGVDASVVSMPS 612 (690)
T ss_dssp SEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CEEEEEechHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 89999999999999999999999998 77766654
No 31
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=27.23 E-value=65 Score=27.57 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=30.8
Q ss_pred CeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 20 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 20 ~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
++|.|=|-|.-...|+..||.|+.+|+ +.+-+..+
T Consensus 598 ~dvtiia~G~~v~~al~Aa~~L~~~GI~~~Vid~~s 633 (711)
T 3uk1_A 598 RKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPS 633 (711)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHTTEEEEEEECSC
T ss_pred CCEEEEEecHHHHHHHHHHHHHHHcCCCeEEEecCc
Confidence 689999999999999999999999998 66666554
No 32
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=24.35 E-value=93 Score=23.65 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=30.1
Q ss_pred CCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 19 ~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
-.+|.|=|-|.....|...||.|+.+|+ +.+-++.+
T Consensus 216 g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~~~ 252 (341)
T 2ozl_B 216 GTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRT 252 (341)
T ss_dssp CSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECCE
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEeeee
Confidence 3678899999999999999999999997 66655544
No 33
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=22.38 E-value=85 Score=23.77 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=30.0
Q ss_pred CCeEEEeecchhhhHHHHHHHHHhhC-Ce-EEEEEEee
Q 034338 19 HNEVELSALGMAIATVVTIAEILKNN-GL-AVEKKITT 54 (97)
Q Consensus 19 ~~EVeLsAlG~AIS~aV~VAEILKn~-~l-a~~KkI~T 54 (97)
-.+|.|=|-|.....|...||.|+.+ |+ +.+-++.+
T Consensus 219 g~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~~~~ 256 (342)
T 2bfd_B 219 GSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRT 256 (342)
T ss_dssp CSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCE
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHhhcCCCEEEEeeee
Confidence 36788999999999999999999998 87 66555544
No 34
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=21.96 E-value=61 Score=27.37 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCeEEEeecchhhhHHHHHHHHHhhCCe-EEEEEEee
Q 034338 19 HNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 54 (97)
Q Consensus 19 ~~EVeLsAlG~AIS~aV~VAEILKn~~l-a~~KkI~T 54 (97)
-++|.|=|-|.-...|+..||.|+.+|+ +.+-+..+
T Consensus 549 g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~s 585 (663)
T 3kom_A 549 DAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPC 585 (663)
T ss_dssp TCSCEEEECTTHHHHHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHhcCCCeEEEEcCc
Confidence 3689999999999999999999999998 77666655
Done!