BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034340
(97 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 96/97 (98%), Positives = 97/97 (100%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/97 (97%), Positives = 97/97 (100%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE
Sbjct: 1 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRTT+RTVPFLFVRGDGVILVSPPLRTA
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 97
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/97 (97%), Positives = 96/97 (98%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVR TRRTVPFLFVRGDGVILVSPPLRTA
Sbjct: 61 IDDETYEEIVRATRRTVPFLFVRGDGVILVSPPLRTA 97
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/97 (96%), Positives = 97/97 (100%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MAAEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRTT+RTVPFLFVRGDGVILVSPPLRTA
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 97
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/97 (96%), Positives = 97/97 (100%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRTT+RTVPFLFVRGDGVILVSPPLRTA
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 97
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/97 (93%), Positives = 96/97 (98%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M++EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE++TTVE
Sbjct: 1 MSTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRTT+RTVPFLFVRGDGVILVSPPLR A
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRAA 97
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/96 (95%), Positives = 95/96 (98%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEI
Sbjct: 3 GTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 62
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
DDETYEEIVRTT+RTVPFLFVRGDGVILVSPPLRTA
Sbjct: 63 DDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 98
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/96 (95%), Positives = 95/96 (98%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A+EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI
Sbjct: 3 AAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 62
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
DDETYEEIVRTT+RT+PFLFVRGDGVILVSPPLRTA
Sbjct: 63 DDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 98
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Brachypodium distachyon]
Length = 98
Score = 184 bits (466), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 91/96 (94%), Positives = 95/96 (98%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
++EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEI
Sbjct: 3 SAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 62
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
DDETYEEIVRTTRRT+PFLFVRGDGVILVSPPLRTA
Sbjct: 63 DDETYEEIVRTTRRTIPFLFVRGDGVILVSPPLRTA 98
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 92/97 (94%), Positives = 94/97 (96%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1 MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 88/97 (90%), Positives = 96/97 (98%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV+TTVE
Sbjct: 1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIV+T++R VP+LFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVKTSKRVVPYLFVRGDGVILVSPPLRTS 97
>gi|168005030|ref|XP_001755214.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693807|gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 97
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/97 (91%), Positives = 96/97 (98%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG+VEEV T+VE
Sbjct: 1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGEVEEVTTSVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRT+RRTVP+LFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTSRRTVPYLFVRGDGVILVSPPLRTS 97
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum
aestivum]
Length = 98
Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/96 (92%), Positives = 94/96 (97%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+++EE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEI
Sbjct: 3 SADEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 62
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
DDETYEEIVRTTRR +PFLFVRGDGVILVSPPLRTA
Sbjct: 63 DDETYEEIVRTTRRAIPFLFVRGDGVILVSPPLRTA 98
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 180 bits (457), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 87/96 (90%), Positives = 95/96 (98%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VT++E
Sbjct: 5 MASEEDVAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSIE 64
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
IDDETYEEIVRT++RT+P+LFVRGDGVILVSPPLRT
Sbjct: 65 IDDETYEEIVRTSKRTIPYLFVRGDGVILVSPPLRT 100
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/94 (95%), Positives = 93/94 (98%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+EE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEIDD
Sbjct: 28 DEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDD 87
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
ETYEEIVRTTRRT+PFLFVRGDGVILVSPPLRTA
Sbjct: 88 ETYEEIVRTTRRTIPFLFVRGDGVILVSPPLRTA 121
>gi|449446417|ref|XP_004140968.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein
LSm3-like [Cucumis sativus]
Length = 101
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/101 (91%), Positives = 94/101 (93%), Gaps = 4/101 (3%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVK----LRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA+EEES VKEPLDLIRLSLDERIYVK LRSDRELRGKLHAYDQHLNMILGDVEE V
Sbjct: 1 MATEEESTVKEPLDLIRLSLDERIYVKSLXPLRSDRELRGKLHAYDQHLNMILGDVEESV 60
Query: 57 TTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
TTVEIDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 TTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 101
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/97 (88%), Positives = 93/97 (95%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M+ EEE+ V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1 MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRTT+RT+ FLFVRGDGVILVSPPLRTA
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTA 97
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 94/97 (96%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEV+TTVE
Sbjct: 1 MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRTT+RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT 97
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 93/97 (95%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M+ EE++ V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1 MSGEEDATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRTT+RT+ FLFVRGDGVILVSPPLRTA
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTA 97
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/89 (96%), Positives = 89/89 (100%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEE
Sbjct: 16 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEE 75
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IVRTT+RT+PFLFVRGDGVILVSPPLRTA
Sbjct: 76 IVRTTKRTIPFLFVRGDGVILVSPPLRTA 104
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/97 (86%), Positives = 94/97 (96%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEV+TT+E
Sbjct: 1 MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIVRTT+RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT 97
>gi|357126031|ref|XP_003564692.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Brachypodium distachyon]
Length = 114
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 95/112 (84%), Gaps = 16/112 (14%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLH----------------AYDQHL 45
++EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLH AYDQHL
Sbjct: 3 SAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVSASSYFCLLILNLLMAYDQHL 62
Query: 46 NMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
NMILGDVEE+VTTVEIDDETYEEIVRTTRRT+PFLFVRGDGVILVSPPLRTA
Sbjct: 63 NMILGDVEEIVTTVEIDDETYEEIVRTTRRTIPFLFVRGDGVILVSPPLRTA 114
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/96 (86%), Positives = 93/96 (96%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEV+TT+EI
Sbjct: 1 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 60
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
DDETYEEIVRTT+RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 DDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT 96
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/97 (84%), Positives = 91/97 (93%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEEESAVKEPL+LI LSLDERIYVKLRSDRELRGKLHAYDQHLN++LGDVEE+VTTVE
Sbjct: 1 MASEEESAVKEPLNLIWLSLDERIYVKLRSDRELRGKLHAYDQHLNIVLGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDD + +++TT+RTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDLLFSFLLQTTKRTVPFLFVRGDGVILVSPPLRTT 97
>gi|326516156|dbj|BAJ88101.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 123
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 95/118 (80%), Gaps = 22/118 (18%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 39
MASEE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLH
Sbjct: 5 MASEEDVAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHDLNGKIISASKYTEEDTLNVL 64
Query: 40 -AYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
AYDQHLNMILGDVEE+VT++EIDDETYEEIVRT++RT+P+LFVRGDGVILVSPPLRT
Sbjct: 65 PAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSKRTIPYLFVRGDGVILVSPPLRT 122
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 88/93 (94%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EE++ VKEPLDLIRLSLDERIYVKLR DRELRG+LHAYDQHLNMILG+VEE +T++EID
Sbjct: 2 AEEDATVKEPLDLIRLSLDERIYVKLRGDRELRGRLHAYDQHLNMILGEVEETITSIEID 61
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
DETYEEI++T +R VPFLFVRGDGVILVSPPLR
Sbjct: 62 DETYEEIIKTNKRAVPFLFVRGDGVILVSPPLR 94
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/94 (82%), Positives = 87/94 (92%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EE++ VKEPLDLIRLSLDER+YVKLR DRE+RGKLHAYDQHLNMILGDVEE +TTVEID
Sbjct: 2 AEEDTTVKEPLDLIRLSLDERVYVKLRGDREIRGKLHAYDQHLNMILGDVEETITTVEID 61
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
DETYEEIV+TT+R V +LFVRGD V LVSPPLRT
Sbjct: 62 DETYEEIVKTTKRAVRYLFVRGDAVTLVSPPLRT 95
>gi|255087196|ref|XP_002505521.1| predicted protein [Micromonas sp. RCC299]
gi|226520791|gb|ACO66779.1| predicted protein [Micromonas sp. RCC299]
Length = 95
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/94 (81%), Positives = 87/94 (92%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EE++ VKEPLDLIRLSLDER+YVKLR +RE+RGKLHAYDQHLNMILGDVEE +TTVEID
Sbjct: 2 AEEDTTVKEPLDLIRLSLDERVYVKLRGEREIRGKLHAYDQHLNMILGDVEETITTVEID 61
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
DETYEEI++TT+R V FLFVRGD V LVSPPLRT
Sbjct: 62 DETYEEIIKTTKRAVRFLFVRGDAVTLVSPPLRT 95
>gi|302792292|ref|XP_002977912.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
gi|302810500|ref|XP_002986941.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300145346|gb|EFJ12023.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300154615|gb|EFJ21250.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
Length = 97
Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/97 (89%), Positives = 94/97 (96%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEE+ AVKEPLDLIRLSLDERIYVKLR+DRELRGKLHAYDQHLNMILG+VEEVVTT E
Sbjct: 1 MASEEDGAVKEPLDLIRLSLDERIYVKLRADRELRGKLHAYDQHLNMILGEVEEVVTTTE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IDDETYEEIV+TT+R VP+LFVRGDGVILVSPPLR+A
Sbjct: 61 IDDETYEEIVKTTKRQVPYLFVRGDGVILVSPPLRSA 97
>gi|302855073|ref|XP_002959037.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
gi|300255603|gb|EFJ39898.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
Length = 97
Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/97 (81%), Positives = 90/97 (92%), Gaps = 1/97 (1%)
Query: 1 MASEEESA-VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
MA + E+A VKEPLDLIRLSLDERIYVKLR +RELRG+LHAYDQHLNMILG+VEE +TTV
Sbjct: 1 MADDGETATVKEPLDLIRLSLDERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTV 60
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
EIDDETYEEI++T +R +PFLFVRGDGVILVSPPLR+
Sbjct: 61 EIDDETYEEIIKTQKRVIPFLFVRGDGVILVSPPLRS 97
>gi|159479600|ref|XP_001697878.1| Sm protein [Chlamydomonas reinhardtii]
gi|158273976|gb|EDO99761.1| Sm protein [Chlamydomonas reinhardtii]
Length = 97
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/97 (80%), Positives = 90/97 (92%), Gaps = 1/97 (1%)
Query: 1 MASEEESA-VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
MA + E+A VKEPLDLIRLSLDERIYVKLR +RELRG+LHAYDQHLNMILG+VEE +TTV
Sbjct: 1 MADDGETATVKEPLDLIRLSLDERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTV 60
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
EIDDETYEEI++T +R +PFLFVRGDG+ILVSPPLR+
Sbjct: 61 EIDDETYEEIIKTQKRVIPFLFVRGDGIILVSPPLRS 97
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans morsitans]
Length = 102
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/102 (73%), Positives = 89/102 (87%), Gaps = 5/102 (4%)
Query: 1 MASEEESA-----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA EEE A VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE
Sbjct: 1 MAGEEEQAQVVLSVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 60
Query: 56 VTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
VTTVEID+ETYEE+ +TT+RT+P LFVRGDGVILVSPP+R
Sbjct: 61 VTTVEIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMRVG 102
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/100 (74%), Positives = 89/100 (89%), Gaps = 3/100 (3%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA+EEE VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VT
Sbjct: 1 MATEEEQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 60
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
TVEID+ETYEE+ +TT+RT+P LFVRGDGVILVSPP+R
Sbjct: 61 TVEIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMRVG 100
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/89 (83%), Positives = 84/89 (94%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 11 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 70
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
EEI ++T+R +P LFVRGDGVILVSPPLR
Sbjct: 71 EEIYKSTKRNIPMLFVRGDGVILVSPPLR 99
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 85/93 (91%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+ + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+E
Sbjct: 4 QTAVVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEE 63
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
TYEEI +TT+R +P LFVRGDGVILV+PPLR
Sbjct: 64 TYEEIYKTTKRNIPMLFVRGDGVILVAPPLRGG 96
>gi|114051632|ref|NP_001040418.1| LSM Sm-like protein family member [Bombyx mori]
gi|95102812|gb|ABF51347.1| LSM Sm-like protein family member [Bombyx mori]
Length = 102
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 88/101 (87%), Gaps = 4/101 (3%)
Query: 1 MASEEES----AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA + E+ VKEP DLIRLSLDERIYVK+R++RELRGKLHAYDQHLNM+LGD EE +
Sbjct: 1 MADDTENVAVMTVKEPWDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETI 60
Query: 57 TTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
TTVEID+ETYEE+ RTT+RT+P LFVRGDGVILVSPP+R +
Sbjct: 61 TTVEIDEETYEEVYRTTKRTIPMLFVRGDGVILVSPPVRVS 101
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/103 (71%), Positives = 89/103 (86%), Gaps = 6/103 (5%)
Query: 1 MASEEES------AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA+EEE VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE
Sbjct: 1 MATEEEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60
Query: 55 VVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
VTTVEID+ETYEE+ +TT+RT+P LFVRGDGVILVSPP+R
Sbjct: 61 TVTTVEIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMRVG 103
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 83/90 (92%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LGD EE VTTVEID+ETYE
Sbjct: 12 TVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDAEETVTTVEIDEETYE 71
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
E+ +TT+RT+P LFVRGDGVILVSPPLR
Sbjct: 72 EVYKTTKRTIPMLFVRGDGVILVSPPLRAG 101
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Danio rerio]
Length = 102
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 85/95 (89%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+ + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID
Sbjct: 10 QQSSNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEID 69
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+ETYEE+ ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 70 EETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG 104
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 90/102 (88%), Gaps = 5/102 (4%)
Query: 1 MASEEESA----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA + E A VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+VEE V
Sbjct: 1 MADDAEQAPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETV 60
Query: 57 TTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPP-LRTA 97
TT+EID+ETYEE+ RTT+RT+P LFVRGDGVILVSPP +R A
Sbjct: 61 TTIEIDEETYEEVYRTTKRTIPMLFVRGDGVILVSPPSMRAA 102
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 99
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 89/99 (89%), Gaps = 2/99 (2%)
Query: 1 MASEEESA--VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
MA ++++ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT
Sbjct: 1 MADQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 60
Query: 59 VEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+EID+ETYEEI ++T+R +P LFV+GDGV+LV+PPLR
Sbjct: 61 IEIDEETYEEIYKSTKRNIPMLFVQGDGVVLVAPPLRVG 99
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 6 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 65
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 66 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 96
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member [Tribolium
castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 83/90 (92%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDL+RLSLDERIYVK+R+DRE+RG+LHAYDQH+NMIL D EE +TTVEID+ETYE
Sbjct: 12 TVKEPLDLVRLSLDERIYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVEIDEETYE 71
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
E+ RTT+R +P LFVRGDGVILVSPP+RT+
Sbjct: 72 EVYRTTKRNIPMLFVRGDGVILVSPPMRTS 101
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/102 (73%), Positives = 88/102 (86%), Gaps = 5/102 (4%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA E E + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE
Sbjct: 1 MADEAEQQPSTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 56 VTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
VTTVEID+ETYEE+ ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 61 VTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1 [Pan
troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Loxodonta
africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Bos
taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like protein
LSm3-like [Meleagris gallopavo]
Length = 108
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 18 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 77
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 78 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 108
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 83/89 (93%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VTTVEID+ETYEE
Sbjct: 168 VKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEE 227
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+ +TT+RT+P LFVRGDGVILVSPP+R
Sbjct: 228 VYKTTKRTIPMLFVRGDGVILVSPPMRVG 256
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 10 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 69
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 70 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 100
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 84/89 (94%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/100 (74%), Positives = 88/100 (88%), Gaps = 3/100 (3%)
Query: 1 MASEEE---SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA EE+ VKEPLDLIRLSLDE+IYVK+R++RELRG+LHA+DQHLNM+LGD EE VT
Sbjct: 1 MAEEEQLPIIPVKEPLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 60
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
TVEID+ETYEE+ +TT+RT+P LFVRGDGVILVSPP+R
Sbjct: 61 TVEIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMRVG 100
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 5 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 64
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 65 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 95
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Takifugu
rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EE+ ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EELYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S+ + V+EPLDLIRLSLDERIYVK+R+DREL+G+LHAYDQHLNMILGDVEE VT VEID
Sbjct: 9 SQPANTVEEPLDLIRLSLDERIYVKMRNDRELKGRLHAYDQHLNMILGDVEETVTAVEID 68
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+ETYEEI ++T+R++ LFVRGDGVILVSPPLR+
Sbjct: 69 EETYEEIYKSTKRSIQMLFVRGDGVILVSPPLRSG 103
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EE+ ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EELYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 88/100 (88%), Gaps = 3/100 (3%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA EE+ VKEPLDLIRLSLDE+IYVK+R++RELRG+LHA+DQHLNM+LGD EE VT
Sbjct: 1 MAEEEQMPIIPVKEPLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 60
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
TVEID+ETYEE+ +T++RT+P LFVRGDGVILVSPP+R
Sbjct: 61 TVEIDEETYEEVYKTSKRTIPMLFVRGDGVILVSPPMRVG 100
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 83/89 (93%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VTTVEID+ETYEE
Sbjct: 79 VKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEE 138
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+ +TT+RT+P LFVRGDGVILVSPP+R
Sbjct: 139 VYKTTKRTIPMLFVRGDGVILVSPPMRVG 167
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/100 (74%), Positives = 87/100 (87%), Gaps = 3/100 (3%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA EE+ VKEPLDLIRLSLDE+IYVK+R +RELRG+LHA+DQHLNM+LGD EE VT
Sbjct: 1 MAEEEQMPIIPVKEPLDLIRLSLDEKIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVT 60
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
TVEID+ETYEE+ +TT+RT+P LFVRGDGVILVSPP+R
Sbjct: 61 TVEIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMRVG 100
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 81/90 (90%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDLIRLSLDERIYVK+R++RELRGKLHAYDQHLNM+LGD EE +TTVEID+ETYE
Sbjct: 12 TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYE 71
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
E+ RT +R +P LFVRGDGVILVSPP+R
Sbjct: 72 EVYRTNKRNIPMLFVRGDGVILVSPPVRVG 101
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 83/91 (91%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMIL DVEE +TTVEID+ET+
Sbjct: 11 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTVEIDEETF 70
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EE+ RT +RTVP +F+RGDGVILVSPPLR
Sbjct: 71 EELFRTNKRTVPMMFIRGDGVILVSPPLRVG 101
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+L+AYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 84/90 (93%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDL+RLSLDE+IYVK+R+DREL+G+LHAYDQH+NMIL DVEE +TTVEID+ETYE
Sbjct: 12 TVKEPLDLVRLSLDEKIYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVEIDEETYE 71
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
E+ ++T+R +P LFVRGDGVILVSPP+RT+
Sbjct: 72 EVYKSTKRNIPMLFVRGDGVILVSPPIRTS 101
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+L+AYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 86/89 (96%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+AV+EPLDL+RLSLDE+IYVK+R++RELRG+LHAYDQHLNMILGDVEE VT+VEID+ETY
Sbjct: 11 TAVEEPLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETY 70
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
EE+ ++T+R++P LFVRGDGVILVSPP+R
Sbjct: 71 EEVYKSTKRSIPMLFVRGDGVILVSPPVR 99
>gi|110671432|gb|ABG81967.1| putative U6 snRNA-associated Sm-like protein LSm3 [Diaphorina
citri]
Length = 101
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 84/89 (94%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYE
Sbjct: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
EI +TT+R++P LFVRGDGVILVSPP RT
Sbjct: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
>gi|442761385|gb|JAA72851.1| Putative u6 small nuclear rna associated, partial [Ixodes ricinus]
Length = 148
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 86/89 (96%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+AV+EPLDL+RLSLDE+IYVK+R++RELRG+LHAYDQHLNMILGDVEE VT+VEID+ETY
Sbjct: 57 TAVEEPLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETY 116
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
EE+ ++T+R++P LFVRGDGVILVSPP+R
Sbjct: 117 EEVYKSTKRSIPMLFVRGDGVILVSPPVR 145
>gi|307104511|gb|EFN52764.1| hypothetical protein CHLNCDRAFT_26410 [Chlorella variabilis]
Length = 99
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/98 (74%), Positives = 88/98 (89%), Gaps = 4/98 (4%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EEE+ V+EPLDLIRLSLDE++YVKL+ +RELRGKLHAYDQHLNMILGDVEE VT+VEID
Sbjct: 2 AEEENTVREPLDLIRLSLDEKVYVKLKGERELRGKLHAYDQHLNMILGDVEETVTSVEID 61
Query: 63 DETYEEIVRTTR----RTVPFLFVRGDGVILVSPPLRT 96
+ET+EEI++ + R VP+LFVRGDGVILVSPPLR+
Sbjct: 62 EETFEEIIKASEGDSSRMVPYLFVRGDGVILVSPPLRS 99
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 83/91 (91%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLD IRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDPIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>gi|198433468|ref|XP_002128408.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
[Ciona intestinalis]
Length = 105
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 82/91 (90%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
V+EPLDLIRLSLDER+YVK+R++RELRG+LHAYDQHLNM+LG+VEE VT VEID+ETY
Sbjct: 14 QTVEEPLDLIRLSLDERVYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTAVEIDEETY 73
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI + T+RT+P LFVRGDGVILVSPPLR
Sbjct: 74 EEIYKQTKRTIPMLFVRGDGVILVSPPLRAG 104
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 87/103 (84%), Gaps = 6/103 (5%)
Query: 1 MASEEES------AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA E E VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE
Sbjct: 1 MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60
Query: 55 VVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
VTTVEID+ETYEE+ +T +RT+P LFVRGDGVILVSPP+R +
Sbjct: 61 TVTTVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMRLS 103
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 88/102 (86%), Gaps = 5/102 (4%)
Query: 1 MASEEESAV-----KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA ++E +EPLDLIRLSLDERIYVK+R++RELRG+L+AYDQHLNMILGDVEE
Sbjct: 1 MADDQEQQAPVQNAEEPLDLIRLSLDERIYVKMRNERELRGRLNAYDQHLNMILGDVEET 60
Query: 56 VTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
VTTVEID+ET+EEI ++T+R +P LFVRGDGVILVSPP+RT
Sbjct: 61 VTTVEIDEETFEEIYKSTKRNIPMLFVRGDGVILVSPPMRTG 102
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 89/99 (89%), Gaps = 2/99 (2%)
Query: 1 MASEEESA--VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
+A+ EE++ V+EPLDL+RLSLDERI VK+R+DRELRG+LHAYDQHLNM+LGDVEE +TT
Sbjct: 4 VATNEETSNTVEEPLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETITT 63
Query: 59 VEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
VEIDDET+EE+ +T++R +P L+VRGDGVILVSPPLR
Sbjct: 64 VEIDDETFEELYKTSKRQIPMLYVRGDGVILVSPPLRVG 102
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 82/89 (92%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VTTVEID+ETYEE
Sbjct: 15 VKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEE 74
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+ +T +RT+P LFVRGDGVILVSPP+R
Sbjct: 75 VYKTAKRTIPMLFVRGDGVILVSPPMRVG 103
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 82/87 (94%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VTTVEID+ETYEE
Sbjct: 15 VKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEE 74
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLR 95
+ +T +RT+P LFVRGDGVILVSPP+R
Sbjct: 75 VYKTAKRTIPMLFVRGDGVILVSPPMR 101
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 82/91 (90%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVKLR+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKLRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFV GD V+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVWGDCVVLVAPPLRVG 102
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nomascus
leucogenys]
Length = 102
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 82/91 (90%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+E D+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIETDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFV GDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVWGDGVVLVAPPLRVG 102
>gi|225713042|gb|ACO12367.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 84/88 (95%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
V+EPLDLIRLSLDERIYVK+R++REL+G+L+AYDQHLNMILG+VEE VT++EID+ETYEE
Sbjct: 16 VEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVEETVTSIEIDEETYEE 75
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ RTT+R +P LFVRGDGVILVSPP+R+
Sbjct: 76 VYRTTKRNIPMLFVRGDGVILVSPPMRS 103
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Otolemur
garnettii]
Length = 102
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+AV++PLDLIRLSL++RIYVK+R+DRELR +LHAYDQHLNMI GDVEE VTT+EID+ETY
Sbjct: 12 NAVEKPLDLIRLSLNKRIYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR +
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVS 102
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 86/101 (85%), Gaps = 6/101 (5%)
Query: 1 MASEEES------AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA E E VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLN++LGD EE
Sbjct: 1 MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNIVLGDAEE 60
Query: 55 VVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
VTTVEID+ETYEE+ +T +RT+P LFVRGDGVILVSPP+R
Sbjct: 61 TVTTVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMR 101
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 87/96 (90%), Gaps = 3/96 (3%)
Query: 3 SEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+E +SA + EPLD++RLSLDERIYVK+R++RELRG+LHAYDQHLNM+LGDVEE VT+V
Sbjct: 5 AENQSAPCVMNEPLDMVRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDVEETVTSV 64
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
EID+ET+EE+ +T+RR++P LFVRGDGVILVSPP R
Sbjct: 65 EIDEETFEEVYKTSRRSIPMLFVRGDGVILVSPPSR 100
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Megachile rotundata]
Length = 103
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 83/97 (85%), Gaps = 4/97 (4%)
Query: 1 MASEEESA----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA E E VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+ EE V
Sbjct: 1 MADEAEQVPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETV 60
Query: 57 TTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPP 93
TTVEID+ETYEE+ RTT+R + LFVRGDGVILVSPP
Sbjct: 61 TTVEIDEETYEEVYRTTKRNISMLFVRGDGVILVSPP 97
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 83/97 (85%), Gaps = 4/97 (4%)
Query: 1 MASEEESA----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA E E VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+ EE V
Sbjct: 1 MADETEQVPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETV 60
Query: 57 TTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPP 93
TTVEID+ETYEE+ RTT+R + LFVRGDGVILVSPP
Sbjct: 61 TTVEIDEETYEEVYRTTKRNISMLFVRGDGVILVSPP 97
>gi|225713400|gb|ACO12546.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 83/88 (94%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
V+EPLDLIRLSLDERIYVK+R++REL+G+L+AYDQHLNMILG+V E VT++EID+ETYEE
Sbjct: 16 VEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVAETVTSIEIDEETYEE 75
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ RTT+R +P LFVRGDGVILVSPP+R+
Sbjct: 76 VYRTTKRNIPMLFVRGDGVILVSPPMRS 103
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 84/88 (95%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
V+EPLDLIRLSLDERIYVK+R++REL+G+L+AYDQ+LNMILG+VEE VT++EID+ETYEE
Sbjct: 16 VEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQYLNMILGEVEETVTSIEIDEETYEE 75
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ RTT+R +P LFVRGDGVILVSPP+R+
Sbjct: 76 VYRTTKRNIPMLFVRGDGVILVSPPMRS 103
>gi|313247586|emb|CBY15769.1| unnamed protein product [Oikopleura dioica]
Length = 103
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 82/90 (91%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
++ V+EPLDL+RLSLDERI+VKLR++REL G+LHA+DQHLNMILGDVEE VT VEIDDET
Sbjct: 13 QALVEEPLDLLRLSLDERIFVKLRNERELTGRLHAFDQHLNMILGDVEETVTNVEIDDET 72
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
YEEI R +R++P LFVRGDGVILV+PPLR
Sbjct: 73 YEEIYRQVKRSIPMLFVRGDGVILVAPPLR 102
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 82/90 (91%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S V+EPLDLIRLSLD+RIYVKLR +RELRGKLHAYDQHLNM+LGDVEE VTTVE+D+ET
Sbjct: 13 STVEEPLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETD 72
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
EEI++ +RTV LFVRGDGVILVSPP+RT
Sbjct: 73 EEIIKRRKRTVEMLFVRGDGVILVSPPVRT 102
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 79/85 (92%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+ EE VTTVEID+ETYEE
Sbjct: 6 VKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEE 65
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPP 93
+ RTT+R + LFVRGDGVILVSPP
Sbjct: 66 VYRTTKRNISMLFVRGDGVILVSPP 90
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC 30864]
Length = 106
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 80/90 (88%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V PLDLI+LSLDERI VK+R DRELRG+LHAYDQHLNMIL DVEE VTTVEID+ET+
Sbjct: 16 TKVDVPLDLIKLSLDERILVKMRGDRELRGRLHAYDQHLNMILSDVEETVTTVEIDEETF 75
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
EE+V+TT+R VP LFVRGDGVILVSPPLR
Sbjct: 76 EEMVKTTKREVPMLFVRGDGVILVSPPLRA 105
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/97 (72%), Positives = 80/97 (82%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M EE V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE
Sbjct: 1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
D+ET EEI+R +R + LFVRGDGVIL+SPPLRT+
Sbjct: 61 KDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 82/90 (91%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+KEP+DLIRLS+DERIYVK+R DRELRG+LHA+DQHLNM+LG+ EE +TT+E+D+ET+E
Sbjct: 17 TIKEPVDLIRLSVDERIYVKMRHDRELRGRLHAFDQHLNMVLGEAEETITTIEVDEETFE 76
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
E+ +TT+RT+P LFVRGDGVILVSPP T+
Sbjct: 77 EVYKTTKRTIPMLFVRGDGVILVSPPSTTS 106
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 81/97 (83%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M +EE V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE
Sbjct: 1 MDRKEEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
D+ET EEI+R +R + LF+RGDGVIL+SPPLRT+
Sbjct: 61 KDEETDEEIIRNIKRNIKMLFIRGDGVILISPPLRTS 97
>gi|359493113|ref|XP_003634512.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Vitis vinifera]
gi|296081172|emb|CBI18198.3| unnamed protein product [Vitis vinifera]
Length = 109
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 77/86 (89%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDG 86
IDDETYEEIVR +R++ + D
Sbjct: 61 IDDETYEEIVRVKKRSIEKWHQKSDS 86
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 81/88 (92%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+ES VKEPLDL+RLSLDER+YVKLR+DRELRGKLH+YDQHLNM+LG+VEE+ T E+D+E
Sbjct: 22 DESTVKEPLDLVRLSLDERVYVKLRNDRELRGKLHSYDQHLNMLLGEVEEITTIREVDEE 81
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSP 92
TYEEI+++ +R+VP+LFVRGD V L+SP
Sbjct: 82 TYEEIIKSNKRSVPYLFVRGDAVTLISP 109
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 82/96 (85%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+ +EE +++EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL +VEE + VE
Sbjct: 4 SKKEEGSIEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSNVEETIKVVEK 63
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
D+ET EEIV+ +R + LFVRGDGVIL+SPPLRT+
Sbjct: 64 DEETDEEIVKNIKRNIDMLFVRGDGVILISPPLRTS 99
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 80/95 (84%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+ + + V+EP+DL+RLSLDERI+VKLRS+RELRG+LHAYDQHLNM+LGDVEE+ T VEI
Sbjct: 8 SKQHSTTVEEPMDLVRLSLDERIFVKLRSNRELRGRLHAYDQHLNMVLGDVEEIETIVEI 67
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
DDETYEE+ RT P LF+RGDGVILVSPP T
Sbjct: 68 DDETYEEVYTKNTRTFPMLFIRGDGVILVSPPTET 102
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 86/105 (81%), Gaps = 8/105 (7%)
Query: 1 MASEEESA--------VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
MA+E++ A V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL V
Sbjct: 1 MATEQQQAPVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQV 60
Query: 53 EEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EE VTTVE+D+E +EE+ + T+R +P LFVRGD +ILV+PPLR A
Sbjct: 61 EETVTTVELDEENFEEMHKQTKRHIPMLFVRGDAIILVAPPLRHA 105
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 78/85 (91%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLI+LSL+ERIYVK+R++RELRGKLHA+DQHLNM+LGDVEE++ VEID+ETYEE
Sbjct: 40 VKEPLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIINIVEIDEETYEE 99
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPP 93
I R +RT+ LFVRGDGVILVSPP
Sbjct: 100 IYRQKKRTIQMLFVRGDGVILVSPP 124
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 78/85 (91%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLI+LSL+ERIYVK+R++RELRGKLHA+DQHLNM+LGDVEE++ VEID+ETYEE
Sbjct: 13 VKEPLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIINIVEIDEETYEE 72
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPP 93
I R +RT+ LFVRGDGVILVSPP
Sbjct: 73 IYRQKKRTIQMLFVRGDGVILVSPP 97
>gi|226469802|emb|CAX70182.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226469804|emb|CAX70183.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226487552|emb|CAX74646.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
Length = 105
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 83/93 (89%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+E+ V+EPLDLIRLSLDE+IYVK++ +RELRG LHA+D HLNMILG+VEE VTT+EID
Sbjct: 12 AEQPVLVEEPLDLIRLSLDEKIYVKMKRNRELRGILHAFDSHLNMILGNVEETVTTLEID 71
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
+ETYEE+ +TT+RT+P LF+RGDGVILVSPP +
Sbjct: 72 EETYEEVYKTTKRTIPMLFIRGDGVILVSPPQK 104
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 80/96 (83%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M +E ++EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE
Sbjct: 1 MEKRDEGTIEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIRVVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
D+ET EEIV++ +R + LFVRGDGVIL+SPPLR+
Sbjct: 61 KDEETDEEIVKSIKRKIKMLFVRGDGVILISPPLRS 96
>gi|256085603|ref|XP_002579006.1| snrnp sm protein [Schistosoma mansoni]
gi|353230199|emb|CCD76370.1| putative snrnp sm protein [Schistosoma mansoni]
Length = 103
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 82/92 (89%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E+ V+EPLDLIRLSLDE+IYVK++ +RELRG LHA+D HLNMILG+VEE VTT+EID+
Sbjct: 11 EQPVLVEEPLDLIRLSLDEKIYVKMKRNRELRGVLHAFDSHLNMILGNVEETVTTLEIDE 70
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
ETYEE+ +TT+RT+P LF+RGDGVILVSPP +
Sbjct: 71 ETYEEVYKTTKRTIPMLFIRGDGVILVSPPQK 102
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 79/89 (88%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL VEE VTTVE+D+E +
Sbjct: 13 TGVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENF 72
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
EE+ + T+R +P LFVRGD +ILV+PPLR
Sbjct: 73 EEMHKQTKRQIPMLFVRGDAIILVAPPLR 101
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 80/91 (87%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERI VK+R+D+ELRG+LHAYDQ+ NMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++ +R +P LFVRGDGV+LV+P LR
Sbjct: 72 EEIYKSMKRNIPMLFVRGDGVVLVAPTLRVG 102
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 79/89 (88%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL VEE VTTVE+D+E +
Sbjct: 46 TGVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENF 105
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
EE+ + T+R +P LFVRGD +ILV+PPLR
Sbjct: 106 EEMHKQTKRQIPMLFVRGDAIILVAPPLR 134
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia malayi]
Length = 136
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 79/89 (88%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL VEE VTTVE+D+E +
Sbjct: 46 TGVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENF 105
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
EE+ + T+R +P LFVRGD +ILV+PPLR
Sbjct: 106 EEMHKQTKRQIPMLFVRGDAIILVAPPLR 134
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 86/102 (84%), Gaps = 5/102 (4%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MASE++ + V+EPLDL+RLSLDE++YVK+R+DRELRG+L A+DQHLNM+L DVEE
Sbjct: 1 MASEKKEVVLPATVEEPLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSDVEET 60
Query: 56 VTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+TT E+D++T+EEI R ++R VP LFVRGD VILVSPP+R +
Sbjct: 61 ITTREVDEDTFEEIYRQSKRVVPMLFVRGDSVILVSPPIRAS 102
>gi|212723246|ref|NP_001132868.1| uncharacterized protein LOC100194361 [Zea mays]
gi|194695618|gb|ACF81893.1| unknown [Zea mays]
Length = 107
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 75/82 (91%), Gaps = 1/82 (1%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A+EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI
Sbjct: 3 AAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 62
Query: 62 DDETYEEIVRTTRRT-VPFLFV 82
DDETYEEIVR + +P +F+
Sbjct: 63 DDETYEEIVRVSSFAFLPLVFI 84
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 79/91 (86%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERI VK+R+D+ELRG+LHAYDQ+ NMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++ +R +P LF RGDGV+LV+P LR
Sbjct: 72 EEIYKSMKRNIPMLFFRGDGVVLVAPTLRVG 102
>gi|321465034|gb|EFX76038.1| hypothetical protein DAPPUDRAFT_226183 [Daphnia pulex]
Length = 103
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/102 (73%), Positives = 90/102 (88%), Gaps = 5/102 (4%)
Query: 1 MASEEESA-----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA E E++ V+EPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+VEE
Sbjct: 1 MADENETSAPVITVEEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEET 60
Query: 56 VTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
VTTVEID+ETYEE+ RTT+R +P LFVRGDGVILVSPP+R +
Sbjct: 61 VTTVEIDEETYEEVYRTTKRNIPMLFVRGDGVILVSPPMRGS 102
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 86/102 (84%), Gaps = 5/102 (4%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA+E++ + V+EPLDL+RLSLDER+YVK+R+DRELRG+L A+DQHLNM+L +VEE
Sbjct: 1 MATEKKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEET 60
Query: 56 VTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+TT E+D++T+EEI + T+R VP LFVRGD VILVSPP+R +
Sbjct: 61 ITTREVDEDTFEEIYKQTKRVVPMLFVRGDSVILVSPPIRAS 102
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 86/102 (84%), Gaps = 5/102 (4%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MASE++ + V+EPLDL+RLSLDE++YVK+R+DRELRG+L A+DQHLNM+L +VEE
Sbjct: 1 MASEKKEVTLSATVEEPLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEET 60
Query: 56 VTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+TT E+D++T+EEI R ++R VP LFVRGD VILVSPP+R +
Sbjct: 61 ITTREVDEDTFEEIYRQSKRVVPMLFVRGDSVILVSPPIRAS 102
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 81/90 (90%), Gaps = 1/90 (1%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EPLDL+RLSLDER+YVK+R+DREL G+LH +DQHLNMI+ +VEE VTT+E+D+ET+EE
Sbjct: 14 IEEPLDLVRLSLDERLYVKMRNDRELTGRLHGFDQHLNMIMSEVEETVTTLELDEETFEE 73
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP-PLRTA 97
I RTT+RT+P +F+RGDGVIL+SP PLR
Sbjct: 74 IYRTTQRTIPMIFIRGDGVILISPSPLRQG 103
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 86/102 (84%), Gaps = 5/102 (4%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA+E++ + V+EP+DL+RLSLDER+YVK+R+DRE+RG+L A+DQHLNM+L +VEE
Sbjct: 1 MATEKKEVTLSATVEEPIDLLRLSLDERVYVKMRNDREIRGRLRAFDQHLNMVLSEVEET 60
Query: 56 VTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+TT E+D++T+EEI R T+R VP LFVRGD VILVSPP+R +
Sbjct: 61 ITTREVDEDTFEEIYRQTKRVVPMLFVRGDSVILVSPPIRAS 102
>gi|384491006|gb|EIE82202.1| hypothetical protein RO3G_06907 [Rhizopus delemar RA 99-880]
Length = 102
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/94 (69%), Positives = 79/94 (84%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S + AV+EPLDL+RLSLDER+YVKLR DREL G LHAYD HLNM+LG+VEE +T V+++
Sbjct: 9 STDVGAVEEPLDLVRLSLDERVYVKLRGDRELTGILHAYDGHLNMVLGEVEETITMVDVN 68
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ET EE++RT +RT LFVRGDGVILVSPP RT
Sbjct: 69 EETLEEVIRTVKRTFEMLFVRGDGVILVSPPSRT 102
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/95 (73%), Positives = 87/95 (91%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A+EE++AV+EPLDLIRL+LDE++YVKLR DRE RG+LHAYDQHLNMILGDVEEV+T+ E
Sbjct: 3 AAEEDAAVREPLDLIRLALDEKVYVKLRGDREARGRLHAYDQHLNMILGDVEEVITSTET 62
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
D+ET+EE +TT+R+VPFLF+RGD V LVSPPLR+
Sbjct: 63 DEETFEEFTKTTKRSVPFLFIRGDAVTLVSPPLRS 97
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EPLDLIRLS+DER+YVK R DRELRGKLH YDQHLNMILGDVEE VT+ EID+ET E+
Sbjct: 1 MEEPLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTSTEIDEETDEQ 60
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
IV+ R V LFVRGD V+LVSPPLRT
Sbjct: 61 IVKKQTRKVGMLFVRGDIVVLVSPPLRTT 89
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 77/91 (84%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S++ EPLDL++LS+ ERIYVK R DRELRG LHAYDQHLNM+L +VEE VT E+D+ETY
Sbjct: 2 SSIDEPLDLVKLSIGERIYVKCRGDRELRGLLHAYDQHLNMVLSEVEETVTVQELDEETY 61
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI++ ++R V LF+RGD VILV+PPLRT+
Sbjct: 62 EEIIKQSKRQVEMLFIRGDAVILVAPPLRTS 92
>gi|326435095|gb|EGD80665.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 91
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 77/90 (85%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+ V+EPLDLIRLSLDER+ VK+R +R L G+LHAYDQHLNM+L DV E +TT EID+E+
Sbjct: 2 DKGVEEPLDLIRLSLDERVTVKMRGNRVLSGQLHAYDQHLNMVLSDVVETITTSEIDEES 61
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
YEEI++TT R +P L+VRGDGVILV+PP+R
Sbjct: 62 YEEIIKTTERKMPMLYVRGDGVILVAPPMR 91
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 76/91 (83%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+++ EPLDLI+LS+ ERIYVK R DRELRG L AYDQHLNM+L DVEE +T E+D ETY
Sbjct: 2 ASIDEPLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETY 61
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EE+++ ++RT+ LFVRGD VILV+PPLRTA
Sbjct: 62 EELIKQSKRTIEMLFVRGDVVILVAPPLRTA 92
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 74/89 (83%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
+++PLDLI L+LDE I VKLR DRELRGKL A+DQH+N++L DVEE VE+DDET EE
Sbjct: 2 IQQPLDLILLALDEEILVKLRGDRELRGKLQAFDQHMNLVLSDVEETALKVEVDDETGEE 61
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+++ +R +P LFVRGDGVILV+PPLRTA
Sbjct: 62 LIKAVKRKMPMLFVRGDGVILVAPPLRTA 90
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 75/91 (82%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+++ EPLDLI+LS+ ERIYVK R DRELRG L AYDQHLNM+L DVEE +T E+D ETY
Sbjct: 2 ASIDEPLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETY 61
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EE+++ ++RT+ LFVRGD VILV+PPLRT
Sbjct: 62 EELIKQSKRTIEMLFVRGDVVILVAPPLRTG 92
>gi|428178094|gb|EKX46971.1| hypothetical protein GUITHDRAFT_70214 [Guillardia theta CCMP2712]
Length = 97
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/97 (72%), Positives = 84/97 (86%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA + + V EPLDL+RLSLDERIYVK+R DRELRGKLHAYDQHLNM+LG+VEEVVT VE
Sbjct: 1 MAGKGGTNVDEPLDLLRLSLDERIYVKMRGDRELRGKLHAYDQHLNMVLGEVEEVVTVVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
D++T+EE V+ T+R + L+VRGDGVILVSPPLRT+
Sbjct: 61 YDEDTFEEHVKMTKRNIDMLYVRGDGVILVSPPLRTS 97
>gi|167518686|ref|XP_001743683.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777645|gb|EDQ91261.1| predicted protein [Monosiga brevicollis MX1]
Length = 93
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 75/89 (84%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+V+EPLDL+RLSL+E++ VK+R DR+L G LHAYDQH+NM+L +V E + TV++DDET E
Sbjct: 5 SVEEPLDLVRLSLEEKVLVKMRGDRQLEGTLHAYDQHMNMVLSNVVETLATVDVDDETGE 64
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
E+V+T +R +P L+VRGDGVILV+PP R
Sbjct: 65 ELVKTAKRVLPMLYVRGDGVILVAPPHRA 93
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 68/90 (75%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+V EP DLIRLS+ ER+YVKLR DRELRG LHAYD H+N+ILGDVEE + V+++DE+
Sbjct: 21 GSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESG 80
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
E VR +R LFVRGD VILVSPP T
Sbjct: 81 SETVRVVKRQSEMLFVRGDSVILVSPPSST 110
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 67/90 (74%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+V EP DLIRLS+ ER+YVKLR DRELRG LHAYD H+N+ILGDVEE + V+I+DE
Sbjct: 15 GSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINDENG 74
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
E VR +R LFVRGD VILVSPP T
Sbjct: 75 HETVRVVKRQSEMLFVRGDSVILVSPPAST 104
>gi|298711111|emb|CBJ32339.1| U6 snRNA-associated Sm-like protein LSm3 [Ectocarpus siliculosus]
Length = 93
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V+EPLDLIRLSLDERI+VK R +RELRGKLH+YDQHLNM+LGDVEE VTTVE+D++TY
Sbjct: 3 SSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTY 62
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEIVRT++R++ LFVRGD VILVSPP+RT
Sbjct: 63 EEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago hordei]
Length = 109
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 69/90 (76%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+V EP DLIRLS+ ER+YVKLR DRELRG LHAYD H+N+ILGDVEE + V+I++ET
Sbjct: 20 GSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETG 79
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+E VR +R LFVRGD VILVSPP T
Sbjct: 80 KETVRVVKRQSEMLFVRGDSVILVSPPSST 109
>gi|444705548|gb|ELW46970.1| U6 snRNA-associated Sm-like protein LSm3 [Tupaia chinensis]
Length = 70
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 64/70 (91%)
Query: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGV 87
+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI ++T+R +P LFVRGDGV
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGV 60
Query: 88 ILVSPPLRTA 97
+LV+PPLR
Sbjct: 61 VLVAPPLRVG 70
>gi|343427129|emb|CBQ70657.1| probable LSM3-U6 snRNA-associated Sm-like protein [Sporisorium
reilianum SRZ2]
Length = 113
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 68/90 (75%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+V EP DLIRLS+ ER+YVKLR DRELRG LHAYD H+N+ILGDVEE + V+I++ET
Sbjct: 24 GSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETG 83
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
E VR +R LFVRGD VILVSPP T
Sbjct: 84 AETVRVVKRQSEMLFVRGDSVILVSPPSST 113
>gi|308811052|ref|XP_003082834.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
gi|116054712|emb|CAL56789.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
Length = 487
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 83/94 (88%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+E+++AV+EPLDLIRL+LDER+YVKLR DRE RG+LHAYDQHLNMILG+VEE +T+ E D
Sbjct: 394 AEDDAAVREPLDLIRLALDERVYVKLRGDREARGRLHAYDQHLNMILGEVEETITSTETD 453
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ET+EE +TT+R VP+LF+RGD V LVSPPLR
Sbjct: 454 EETFEEFTKTTKRRVPYLFIRGDAVTLVSPPLRN 487
>gi|432110929|gb|ELK34403.1| U6 snRNA-associated Sm-like protein LSm3 [Myotis davidii]
Length = 70
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 64/70 (91%)
Query: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGV 87
+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI ++T+R +P LFVRGDGV
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGV 60
Query: 88 ILVSPPLRTA 97
+LV+PPL+
Sbjct: 61 VLVAPPLKVG 70
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 70/84 (83%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V EPLDLIRLSLDE++Y+KL+ DRELRG LHAYDQHLNM+LG+VEE + ++ID ET
Sbjct: 4 TTVLEPLDLIRLSLDEQVYIKLKGDRELRGTLHAYDQHLNMVLGNVEETIHEIDIDKETN 63
Query: 67 EEIVRTTRRTVPFLFVRGDGVILV 90
E+ +++T R + LF+RGDGVILV
Sbjct: 64 EQQMKSTTRKIGMLFLRGDGVILV 87
>gi|328769008|gb|EGF79053.1| hypothetical protein BATDEDRAFT_90185 [Batrachochytrium
dendrobatidis JAM81]
Length = 105
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 71/94 (75%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EE EPLDL+RLSLDERIYVK+R DRELRGKLHAYDQH+NM+LG+VEE +T V +D
Sbjct: 12 AEETVQTTEPLDLVRLSLDERIYVKMRGDRELRGKLHAYDQHMNMVLGEVEESITVVHLD 71
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ EE + LFVRGDGVILV+PP RT
Sbjct: 72 ENEDEESSEIVTKNYEMLFVRGDGVILVAPPKRT 105
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 76/90 (84%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
++EPLDLI+LS+DER+YVK R+DRELRGKLHA+DQHLNM+L DVEE +T+ E DDET E
Sbjct: 1 TMEEPLDLIKLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLSDVEETITSTEEDDETGE 60
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EIV R+V LFVRGD V+LVSPPLRT+
Sbjct: 61 EIVNKRTRSVGMLFVRGDIVVLVSPPLRTS 90
>gi|388580102|gb|EIM20419.1| like-Sm ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
A+KEPLDL+RLSL+E+I VKLR DREL G LHAYD H+N+ILG+V+E VT V++D T E
Sbjct: 4 AIKEPLDLVRLSLNEQIKVKLRGDRELIGVLHAYDSHMNLILGNVDEFVTVVDVDSTTLE 63
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
R +R++P L++RGDGVIL+SP
Sbjct: 64 STTRFVKRSMPMLYIRGDGVILISP 88
>gi|344241612|gb|EGV97715.1| U6 snRNA-associated Sm-like protein LSm3 [Cricetulus griseus]
Length = 103
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 67/78 (85%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 6 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 65
Query: 67 EEIVRTTRRTVPFLFVRG 84
EEI + + + F VR
Sbjct: 66 EEIYKVSPAGLLFDSVRS 83
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 66/90 (73%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S ++EP DLIRLSL ER++VKLR DRE+ G LHAYD H+N+IL DVEE + V+ D
Sbjct: 6 SGIQEPFDLIRLSLSERVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTDAPNG 65
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ +V +R + LFVRGDGVILVSPP RT
Sbjct: 66 QGVVNIAKRKMDMLFVRGDGVILVSPPART 95
>gi|19112539|ref|NP_595747.1| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720084|sp|Q9Y7M4.2|LSM3_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|6942158|emb|CAB42366.2| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe]
Length = 93
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 69/90 (76%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LGD EE+VT + ++
Sbjct: 2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEE 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPP 93
++ ++T R+ LFVRGD VIL++PP
Sbjct: 62 TDKDKALKTIRKHYEMLFVRGDSVILIAPP 91
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+ ++V EPLDL+RLSLDER+YVKLR DRE++G+LHAYD HLNM+L DVEE V V+ID+
Sbjct: 9 DNTSVLEPLDLVRLSLDERVYVKLRGDREIKGRLHAYDSHLNMVLSDVEETVYIVDIDET 68
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
EE + T ++ +FVRGD VIL+SPP R
Sbjct: 69 --EEHISTKKKHSEMIFVRGDSVILISPPKR 97
>gi|358374818|dbj|GAA91407.1| U6 small nuclear ribonucleoprotein [Aspergillus kawachii IFO
4308]
Length = 96
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
+EI+RT ++ LFVRGD V+L+SP
Sbjct: 69 QEILRTIKKQEEMLFVRGDSVVLISP 94
>gi|449019835|dbj|BAM83237.1| U6 snRNA-associated Sm-like protein LSm3 [Cyanidioschyzon merolae
strain 10D]
Length = 102
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 71/90 (78%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+ ++EP++L+R++LDER++VKL+ DREL G LHAYDQHLN+I+ D EE + E+D+ET
Sbjct: 7 KGQLEEPVELLRIALDERVFVKLKGDRELVGTLHAYDQHLNLIISDAEETLQKAELDEET 66
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
YE+IVR RR + ++VRGD V LVSP LR
Sbjct: 67 YEQIVRQERRKLQLVYVRGDTVFLVSPLLR 96
>gi|389746884|gb|EIM88063.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 97
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD--ET 65
++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+ +
Sbjct: 7 GIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDAPEGVPP 66
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ +V +R VP LFVRGDGVILVSPP RT
Sbjct: 67 SQSVVNMAKRKVPMLFVRGDGVILVSPPSRT 97
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD- 63
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+I+ DVEE + V+ D
Sbjct: 4 SSSGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSV 63
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
T + +++ +R + LFVRGDGVILVSPP RT
Sbjct: 64 PTGQGVLQVAKRKMEMLFVRGDGVILVSPPART 96
>gi|145249892|ref|XP_001401285.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus niger CBS
513.88]
gi|134081970|emb|CAK46655.1| unnamed protein product [Aspergillus niger]
Length = 96
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
+E +RT ++ LFVRGD V+L+SP
Sbjct: 69 QETLRTIKKQEEMLFVRGDSVVLISP 94
>gi|296423190|ref|XP_002841138.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637372|emb|CAZ85329.1| unnamed protein product [Tuber melanosporum]
Length = 95
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 74/94 (78%), Gaps = 2/94 (2%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+++ S ++EPLDL+RLSLDE+++VKLR DRELRG+LHAYD H N++LGDVEE + TV D
Sbjct: 4 ADDTSPIQEPLDLVRLSLDEQVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYTVGDD 63
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+E ++ V+T ++ LFVRGD V+L+SP ++
Sbjct: 64 EE--DDSVKTIKKQSEMLFVRGDSVVLISPQAQS 95
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 66/90 (73%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+I+ DVEE + V+ D
Sbjct: 6 SGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPN 65
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ ++ +R + LFVRGDGVILVSPP RT
Sbjct: 66 GQGLQVAKRKMEMLFVRGDGVILVSPPART 95
>gi|259489765|tpe|CBF90306.1| TPA: U6 small nuclear ribonucleoprotein (Lsm3), putative
(AFU_orthologue; AFUA_5G12570) [Aspergillus nidulans
FGSC A4]
Length = 96
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
+E +RT ++ LFVRGD V+L+SP
Sbjct: 69 QEHIRTIKKQEEMLFVRGDSVVLISP 94
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis
subvermispora B]
Length = 97
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI--DDE 64
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+
Sbjct: 6 SGIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGSA 65
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ V +R + LFVRGDGVILVSPPLRT
Sbjct: 66 NGQNTVNIAKRKIDMLFVRGDGVILVSPPLRT 97
>gi|390981129|pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
gi|390981130|pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
gi|390981131|pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
gi|390981132|pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
gi|390981133|pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
gi|390981134|pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
gi|390981135|pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
gi|390981136|pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
gi|390981137|pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
gi|390981138|pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
gi|390981139|pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
gi|390981140|pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
gi|390981141|pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
gi|390981142|pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 68/90 (75%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLN +LGD EE+VT + ++
Sbjct: 2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNXVLGDAEEIVTIFDDEE 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPP 93
++ ++T R+ LFVRGD VIL++PP
Sbjct: 62 TDKDKALKTIRKHYEXLFVRGDSVILIAPP 91
>gi|335309474|ref|XP_003361652.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Sus
scrofa]
Length = 98
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 69/86 (80%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLD IRLSL+ERI K+R+DRE +G+LHAYD HLN+ILGDVEE T++ + +T+
Sbjct: 12 NTVQEPLDRIRLSLEERIDAKMRNDREAQGRLHAYDPHLNVILGDVEETAATIDTEGKTH 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
EEI ++T++ +P L V G GV+LV+P
Sbjct: 72 EEISKSTKQNIPMLSVWGGGVVLVAP 97
>gi|407927498|gb|EKG20390.1| hypothetical protein MPH_02316 [Macrophomina phaseolina MS6]
Length = 99
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V EPLDL+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +D
Sbjct: 11 APVNEPLDLVRLCLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDANE 69
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
EE+VRT ++ LFVRGD V+L+SP
Sbjct: 70 EEVVRTVKKQSEMLFVRGDSVVLISP 95
>gi|336364678|gb|EGN93033.1| hypothetical protein SERLA73DRAFT_146187 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386725|gb|EGO27871.1| hypothetical protein SERLADRAFT_383548 [Serpula lacrymans var.
lacrymans S7.9]
Length = 96
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ ++EP DLIRLSL ER+YVKLR DRE+ G LHAYD H+N+IL DVEE + V++D
Sbjct: 6 TGIQEPFDLIRLSLSERVYVKLRGDREVTGILHAYDGHMNLILSDVEETIMIVDVDAPLE 65
Query: 67 E-EIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
E V+ +R + LFVRGDGVILVSPP RT
Sbjct: 66 ERRAVKMAKRKMEMLFVRGDGVILVSPPSRT 96
>gi|154283195|ref|XP_001542393.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410573|gb|EDN05961.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 98
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDL+RLSLDE ++VKLR DRELRG+LHAYD H N++LGDVEE + VE +DE+ +E++
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYIVE-EDESEQEVI 72
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
+T ++ LFVRGD V+L+SP
Sbjct: 73 KTIKKQEEMLFVRGDSVVLISP 94
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 66/84 (78%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EPLD++R+SLDER+ +K R DRE+ GKLHAYD HLNM+LGDVEEV TTV D T +E
Sbjct: 7 LQEPLDIVRVSLDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDE 66
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
+ T R +P +F+RGD +ILV+P
Sbjct: 67 QTKKTTRRLPLIFLRGDAIILVAP 90
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 66/84 (78%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EPLD++R+SLD+R+ +K R DRE+ GKLHAYD HLNM+LGDVEEV TTV D T +E
Sbjct: 7 LQEPLDIVRVSLDDRVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEVATTVTTDPLTGDE 66
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
+ T R +P +F+RGD +ILV+P
Sbjct: 67 QTKKTTRRLPLIFLRGDAIILVAP 90
>gi|327356944|gb|EGE85801.1| GTP-binding protein AGP-1 [Ajellomyces dermatitidis ATCC 18188]
Length = 98
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE+ +EI+
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVE-EDESEQEII 72
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
+T ++ LFVRGD V+L+SP
Sbjct: 73 KTIKKQEEMLFVRGDSVVLISP 94
>gi|342321540|gb|EGU13473.1| Hypothetical Protein RTG_00195 [Rhodotorula glutinis ATCC 204091]
Length = 97
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 65/88 (73%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ + EP DLIR+SL ER++VKLR DRELRG LHAYD H+NMIL +VEE + V+ D+ +
Sbjct: 4 NQIAEPFDLIRVSLSERVFVKLRGDRELRGVLHAYDGHMNMILSEVEETIYVVDADEASG 63
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPL 94
+ +VRT +R LFVRGDGV+LV L
Sbjct: 64 DNVVRTVKRNCDMLFVRGDGVVLVRLSL 91
>gi|331225531|ref|XP_003325436.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304426|gb|EFP81017.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 97
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA V+EP DLIRLSL ER+ +KLR DR L G LHAYD H+NM+L DV E +T VE
Sbjct: 1 MADLSGDGVEEPFDLIRLSLSERVLIKLRGDRVLNGTLHAYDGHMNMVLSDVIETITVVE 60
Query: 61 -IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ E I+RT +R LFVRGDGV+LV+PP RT
Sbjct: 61 PAANPDDEPIIRTVKRNCEMLFVRGDGVVLVAPPART 97
>gi|392333626|ref|XP_003752950.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Rattus norvegicus]
gi|392353940|ref|XP_003751639.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Rattus norvegicus]
Length = 177
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ +E LDL+ ++L+E+I +K R+DREL G+LH YDQHLNMILGD EE V +EID+ETY
Sbjct: 12 NTAEERLDLLTINLEEQICMKTRNDRELSGRLHVYDQHLNMILGDAEETVMMIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPL 94
EEI ++T+ +P LF++GD V L +PPL
Sbjct: 72 EEIDKSTKXNIPMLFIQGDDV-LFAPPL 98
>gi|225561720|gb|EEH10000.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus G186AR]
gi|240275325|gb|EER38839.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H143]
gi|325091160|gb|EGC44470.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H88]
Length = 98
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE+ +E++
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVE-EDESEQEVI 72
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
+T ++ LFVRGD V+L+SP
Sbjct: 73 KTIKKQEEMLFVRGDSVVLISP 94
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+A++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+ D
Sbjct: 5 AAIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETILIVDQIDGAG 64
Query: 67 E--EIVRTTRRTVPFLFVRGDGVILVSPPLR 95
E + V +R + LFVRGDGVILVSPP R
Sbjct: 65 EGQQTVNMAKRKMEMLFVRGDGVILVSPPSR 95
>gi|315042007|ref|XP_003170380.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|327298847|ref|XP_003234117.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
gi|311345414|gb|EFR04617.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|326464295|gb|EGD89748.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
Length = 100
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-EDEAGE 70
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
E ++T ++ LFVRGD V+L+SP
Sbjct: 71 ETIKTIKKQEEMLFVRGDSVVLISP 95
>gi|409079690|gb|EKM80051.1| hypothetical protein AGABI1DRAFT_72874 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 93
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE TV I D
Sbjct: 7 SGIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEE---TVMIVDTES 63
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ + +R LFVRGDGVILVSPP R+
Sbjct: 64 NQTINYAKRKWEMLFVRGDGVILVSPPSRS 93
>gi|449690492|ref|XP_002158063.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Hydra magnipapillata]
Length = 72
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 65/72 (90%), Gaps = 1/72 (1%)
Query: 1 MASEEES-AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
MA E+ + V+EPLDL++ SLDE++YVK+R+DRELRGKLHAYDQHLNM+LGDVEE++TTV
Sbjct: 1 MADEDATHTVEEPLDLMKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEEIITTV 60
Query: 60 EIDDETYEEIVR 71
++D+ET EEI +
Sbjct: 61 DVDEETMEEIFK 72
>gi|295670537|ref|XP_002795816.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284901|gb|EEH40467.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 99
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE+ E++
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVE-EDESEREMI 72
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
+T ++ LFVRGD V+L+SP
Sbjct: 73 KTIKKQEEMLFVRGDSVVLISP 94
>gi|302696809|ref|XP_003038083.1| hypothetical protein SCHCODRAFT_102915 [Schizophyllum commune
H4-8]
gi|300111780|gb|EFJ03181.1| hypothetical protein SCHCODRAFT_102915, partial [Schizophyllum
commune H4-8]
Length = 95
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+++EP DLIRLSL ER++VKLR DR+L G LHAYD H+N+IL DVEE + V++ +
Sbjct: 5 SSIQEPFDLIRLSLSERVFVKLRGDRQLEGVLHAYDGHMNLILSDVEETIMIVDVPEGAP 64
Query: 67 EE--IVRTTRRTVPFLFVRGDGVILVSPPLR 95
E V +R + LFVRGDGVILVSPP R
Sbjct: 65 ESQGTVNVAKRKMGMLFVRGDGVILVSPPSR 95
>gi|356534805|ref|XP_003535942.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 2 [Glycine max]
Length = 65
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 63/97 (64%), Gaps = 32/97 (32%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEEESAVKEPL+LI LSLDERIYVKLRSDRELRGKLH
Sbjct: 1 MASEEESAVKEPLNLIWLSLDERIYVKLRSDRELRGKLH--------------------- 39
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
TT+RTVPFLFVRGDGVILVSPPLRT
Sbjct: 40 -----------TTKRTVPFLFVRGDGVILVSPPLRTT 65
>gi|353234582|emb|CCA66606.1| probable LSM3-U6 snRNA-associated Sm-like protein [Piriformospora
indica DSM 11827]
Length = 94
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 63/87 (72%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EP DLIRLSL ER+ VKLR DR+L G LHAYD H+NMIL DVEE V V+ E +
Sbjct: 7 IQEPFDLIRLSLSERVMVKLRGDRQLSGVLHAYDGHMNMILSDVEETVMIVDPVPEGVKP 66
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLR 95
+R +R + L+VRGDGVILVSPP R
Sbjct: 67 SIRVAKRQIEMLYVRGDGVILVSPPQR 93
>gi|392568264|gb|EIW61438.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 97
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+ +
Sbjct: 6 NGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDQPEGGP 65
Query: 67 EE--IVRTTRRTVPFLFVRGDGVILVSPPLRT 96
EE V +R + LFVRGDGVILVSPP RT
Sbjct: 66 EEHSTVNIAKRKMDMLFVRGDGVILVSPPSRT 97
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI--DDE 64
S ++EP DLIRLSL ER++VKLR DRE+ G LHAYD H+N+IL DVEE + V+
Sbjct: 6 SGIQEPFDLIRLSLSERVFVKLRGDREVVGILHAYDGHMNLILSDVEETIMIVDPIEGSP 65
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
E V+ +R + LFVRGDGVILVSPP RT
Sbjct: 66 NSEGTVKVAKRKMNMLFVRGDGVILVSPPSRT 97
>gi|426198547|gb|EKV48473.1| hypothetical protein AGABI2DRAFT_203319 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 63/90 (70%), Gaps = 3/90 (3%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE TV I D
Sbjct: 7 SGIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEE---TVMIVDTES 63
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ +R LFVRGDGVILVSPP R+
Sbjct: 64 NQTTNYAKRKWEMLFVRGDGVILVSPPSRS 93
>gi|326483593|gb|EGE07603.1| hypothetical protein TEQG_06517 [Trichophyton equinum CBS 127.97]
Length = 100
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE ++E E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-ENEAGE 70
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
E ++T ++ LFVRGD V+L+SP
Sbjct: 71 ETIKTIKKQEEMLFVRGDSVVLISP 95
>gi|403417353|emb|CCM04053.1| predicted protein [Fibroporia radiculosa]
Length = 97
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+ +
Sbjct: 6 SGIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGAP 65
Query: 67 E--EIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
E V +R + LFVRGDGVILVSPP RT
Sbjct: 66 EGKGTVNVAKRKMEMLFVRGDGVILVSPPSRT 97
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
++ V+EP DLIRLSL ER+++KLR DRE+RG LHAYDQH+NMILG+VEE T V++D+
Sbjct: 7 DAGVQEPFDLIRLSLSERVFIKLRGDREIRGVLHAYDQHMNMILGEVEETQTIVDLDESA 66
Query: 66 YEEI--VRTTRRTVPFLFVRGDGVILVS 91
+ + +R +R + LFVRGD V+L++
Sbjct: 67 AQPVGTLRQVKRQIDCLFVRGDSVVLLA 94
>gi|452845306|gb|EME47239.1| hypothetical protein DOTSEDRAFT_124864 [Dothistroma septosporum
NZE10]
Length = 95
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 70/95 (73%), Gaps = 5/95 (5%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ V EPLDL+RLSL+E ++VKLR DREL+G+LHAYD H N++LGDV E V
Sbjct: 1 MAESEDAGATPVNEPLDLVRLSLNEIVFVKLRGDRELQGRLHAYDSHCNLVLGDVSETVY 60
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
V+ +DE +E VRT ++ LFVRGD V+L+SP
Sbjct: 61 VVDEEDE--QENVRTVKKQSEMLFVRGDSVVLISP 93
>gi|393216136|gb|EJD01627.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 96
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
++EP DLIRLSL+ER++VKLR DREL G LHAYD H+N+IL DVEE + V+ ++
Sbjct: 7 GIQEPFDLIRLSLNERVFVKLRGDRELNGVLHAYDGHMNLILSDVEETIMLVDSNEAAPP 66
Query: 68 EI-VRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ +R + LFVRGDGVILVSPP RT
Sbjct: 67 AGRINVAKRKMDMLFVRGDGVILVSPPSRT 96
>gi|395330396|gb|EJF62779.1| like-Sm ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 97
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+ +
Sbjct: 6 NGIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDHVEGAP 65
Query: 67 E--EIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
E V +R + LFVRGDGVILVSPP RT
Sbjct: 66 EGHATVNIAKRKMEMLFVRGDGVILVSPPSRT 97
>gi|330918430|ref|XP_003298219.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
gi|311328701|gb|EFQ93672.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
Length = 96
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 66/94 (70%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
EE+ EPLDL+RL +DE + VKLR DREL+G+LHAYD H N++LGDVEE + E +D
Sbjct: 2 EEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEED 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+ E VRT ++ LFVRGD V+L++P T+
Sbjct: 62 DDQEPRVRTVKKQSEMLFVRGDSVVLIAPAEGTS 95
>gi|324567919|gb|ADY49901.1| U6 snRNA-associated Sm-like protein LSm3, partial [Ascaris suum]
Length = 76
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 8/76 (10%)
Query: 1 MASEEESA--------VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
MA+E++ A V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL V
Sbjct: 1 MATEQQQAPVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQV 60
Query: 53 EEVVTTVEIDDETYEE 68
EE VTTVE+D+E +EE
Sbjct: 61 EETVTTVELDEENFEE 76
>gi|345571011|gb|EGX53826.1| hypothetical protein AOL_s00004g485 [Arthrobotrys oligospora ATCC
24927]
Length = 93
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 69/93 (74%), Gaps = 5/93 (5%)
Query: 1 MASEEE--SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
MA E SAV EPLDL+RLSLDE ++VKLR DRELRG+LHAYD H N++LG+VEE +
Sbjct: 1 MADTENGTSAVAEPLDLVRLSLDEVVFVKLRGDRELRGRLHAYDSHCNLVLGEVEETIYV 60
Query: 59 VEIDDETYEEIVRTTRRTVPFLFVRGDGVILVS 91
V+ DD ++ +RT ++ LFVRGD V++++
Sbjct: 61 VDEDD---DDTIRTVKKNSEMLFVRGDSVVIIA 90
>gi|452987088|gb|EME86844.1| hypothetical protein MYCFIDRAFT_49442 [Pseudocercospora fijiensis
CIRAD86]
Length = 94
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 68/95 (71%), Gaps = 6/95 (6%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E+S V EPLDL+RLSL+E ++VKLR DREL+G+LHAYD H N++LGDV E V
Sbjct: 1 MADVEDSGGNPVNEPLDLVRLSLNETVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVY 60
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
V DE E+ VRT ++ LFVRGD V+L+SP
Sbjct: 61 LV---DEEDEDNVRTVKKQSEMLFVRGDSVVLISP 92
>gi|451847192|gb|EMD60500.1| hypothetical protein COCSADRAFT_40145 [Cochliobolus sativus
ND90Pr]
Length = 96
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 66/94 (70%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+E+ EPLDL+RL +DE + VKLR DREL+G+LHAYD H N++LGDVEE + E DD
Sbjct: 2 DEKEETNEPLDLVRLCIDEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYLAEEDD 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+ E VRT ++ LF+RGD V+L++P T+
Sbjct: 62 DDQEPRVRTIKKQSEMLFIRGDSVVLIAPAEGTS 95
>gi|398407923|ref|XP_003855427.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
gi|339475311|gb|EGP90403.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
Length = 94
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 64/86 (74%), Gaps = 3/86 (3%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V EPLDL+RLSL+E ++VKLR DREL+G+LHAYD H N++LGDV E V V DE
Sbjct: 10 NPVNEPLDLVRLSLNEVVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYVV---DEED 66
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
E+ VRT ++ LFVRGD V+L+SP
Sbjct: 67 EDNVRTVKKQSEMLFVRGDSVVLISP 92
>gi|451997874|gb|EMD90339.1| hypothetical protein COCHEDRAFT_1139604 [Cochliobolus
heterostrophus C5]
Length = 96
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 64/89 (71%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+E+ EPLDL+RL +DE + +KLR DREL+G+LHAYD H N++LGDVEE + E DD
Sbjct: 2 DEKEETNEPLDLVRLCIDEIVILKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAEEDD 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ E VRT ++ LF+RGD V+L++P
Sbjct: 62 DDQEPRVRTVKKQSEMLFIRGDSVVLIAP 90
>gi|443925698|gb|ELU44474.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 63/96 (65%), Gaps = 8/96 (8%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
AV+EP DLIRLSL ER+YVKLR DREL G LHAYD H+N+I+ DVEE + VE +
Sbjct: 7 SGAVQEPFDLIRLSLSERVYVKLRGDRELTGVLHAYDGHMNLIMSDVEESIMIVENPENP 66
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILV--------SPP 93
V+ +R V LFVRGDGVILV SPP
Sbjct: 67 ENPNVKVAKRNVEMLFVRGDGVILVRVQTLIVLSPP 102
>gi|238499899|ref|XP_002381184.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
gi|317150537|ref|XP_003190430.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus oryzae
RIB40]
gi|220692937|gb|EED49283.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
Length = 96
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 72/95 (75%), Gaps = 4/95 (4%)
Query: 1 MASEEES---AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N+++GDVEE +
Sbjct: 1 MADTEDAGTTSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVMGDVEETIY 60
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
VE DE EEI+RT +R LFVRGD V+L+SP
Sbjct: 61 VVEE-DENEEEIIRTIKRQEEMLFVRGDSVVLISP 94
>gi|400599588|gb|EJP67285.1| U6 snRNA-associated Sm-like protein LSm3 [Beauveria bassiana
ARSEF 2860]
Length = 95
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 63/86 (73%), Gaps = 3/86 (3%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + VE DD
Sbjct: 9 SHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYGVEEDD--- 65
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
EE ++ R LFVRGD V+L+SP
Sbjct: 66 EEEAKSVSRKSEMLFVRGDSVVLISP 91
>gi|367051210|ref|XP_003655984.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
gi|347003248|gb|AEO69648.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
Length = 98
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%), Gaps = 3/87 (3%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
SAV EPLDL+RL LDE + VKLR DREL+G+LHAYD H N++LGDVEE + V+ DD+
Sbjct: 9 SAVSEPLDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVDEDDD-- 66
Query: 67 EEI-VRTTRRTVPFLFVRGDGVILVSP 92
EE+ ++T + LFVRGD V+L+SP
Sbjct: 67 EEVKLQTVSKKSEMLFVRGDSVVLISP 93
>gi|440637312|gb|ELR07231.1| hypothetical protein GMDG_02458 [Geomyces destructans 20631-21]
Length = 98
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ + EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDV E V V+ DDE
Sbjct: 10 APIDEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVVETVYVVDEDDEDG 69
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
E + +T + LFVRGD V+L+SP
Sbjct: 70 ETL-KTIHKKSEMLFVRGDSVVLISP 94
>gi|396485483|ref|XP_003842182.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
gi|312218758|emb|CBX98703.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
Length = 96
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 64/89 (71%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+E+ EPLDL+RL +DE + VKLR DREL+G+LHAYD H N++LGDVEE + + ++
Sbjct: 2 DEKEETNEPLDLVRLCIDEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVADEEE 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E E VRT ++ LFVRGD V+L++P
Sbjct: 62 EDLEPRVRTVKKQSEMLFVRGDSVVLIAP 90
>gi|242777144|ref|XP_002478974.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722593|gb|EED22011.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 96
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+++V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE DE
Sbjct: 8 DASVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEE-DEN 66
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
EE V+T R+ LFVRGD V+L+SP
Sbjct: 67 EEETVKTIRKQEEMLFVRGDSVVLISP 93
>gi|212533023|ref|XP_002146668.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
gi|210072032|gb|EEA26121.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
Length = 96
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+++V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE DE
Sbjct: 8 DTSVAEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEE-DEN 66
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
EE V+T R+ LFVRGD V+L+SP
Sbjct: 67 EEETVKTIRKQEEMLFVRGDSVVLISP 93
>gi|389629744|ref|XP_003712525.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|351644857|gb|EHA52718.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|440488450|gb|ELQ68177.1| hypothetical protein OOW_P131scaffold00266g63 [Magnaporthe oryzae
P131]
Length = 95
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA E+ EP L+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE T
Sbjct: 1 MADSGEAQANEPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE---THY 57
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
I DE E ++T R + LFVRGD V+++SP + A
Sbjct: 58 IQDEDDESELKTVSRKLEMLFVRGDSVVMISPSDQVA 94
>gi|358382874|gb|EHK20544.1| hypothetical protein TRIVIDRAFT_90246 [Trichoderma virens Gv29-8]
Length = 97
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
EE S V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LGDVEE + V+
Sbjct: 5 GEESSHVAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYAVDD- 63
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DE + V+T R LFVRGD V+L+SP
Sbjct: 64 DEEEGDEVKTISRKSEMLFVRGDSVVLISP 93
>gi|449302452|gb|EMC98461.1| hypothetical protein BAUCODRAFT_138202 [Baudoinia compniacensis
UAMH 10762]
Length = 95
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 5/95 (5%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA EE V EPLDL+RLSL+E ++VKLR DREL+G+LHAYD H N++LG+V E T
Sbjct: 1 MADTEEPGADPVNEPLDLVRLSLNETVFVKLRGDRELQGRLHAYDSHCNLVLGEVTE--T 58
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
++ +E E VRT ++ LFVRGD V+L+SP
Sbjct: 59 IYQVAEEAGGEDVRTLKKQSEMLFVRGDSVVLISP 93
>gi|395516682|ref|XP_003762516.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Sarcophilus harrisii]
Length = 58
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 52/58 (89%)
Query: 40 AYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
AYDQHLNMILGDVEE VTT+EID+ETYEEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 1 AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 58
>gi|350639679|gb|EHA28033.1| hypothetical protein ASPNIDRAFT_211308 [Aspergillus niger ATCC
1015]
Length = 723
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRTTRRTVPFLFVRG 84
+E +RT ++ LFVRG
Sbjct: 69 QETLRTIKKQEEMLFVRG 86
>gi|425767040|gb|EKV05625.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum Pd1]
gi|425780202|gb|EKV18219.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum PHI26]
Length = 96
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 71/95 (74%), Gaps = 4/95 (4%)
Query: 1 MASEEES---AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADSEDTGGPSVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
VE DE EE +RT ++ LFVRGD V+L+SP
Sbjct: 61 VVEE-DENEEETLRTIKKQEEMLFVRGDSVVLISP 94
>gi|402226567|gb|EJU06627.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 92
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EP DL+RLSL ER++VKL+ +R L G LHAYD H+NMI+ DVEE + VE E
Sbjct: 6 AQVQEPFDLVRLSLSERVFVKLKGERSLTGVLHAYDGHMNMIMSDVEETILMVE--PEES 63
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
V+T +R + LFVRGD VILVSP R
Sbjct: 64 GSTVQTMKRAMEMLFVRGDSVILVSPGAR 92
>gi|453087554|gb|EMF15595.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 95
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 3/87 (3%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
++ V EPLDL+RLSL+E ++VKLR DREL G+LHAYD H N++LGDV E TV + D+
Sbjct: 9 DNPVSEPLDLVRLSLNETVFVKLRGDRELAGRLHAYDSHCNLVLGDVTE---TVYVWDDE 65
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
E+ VR ++ LFVRGD V+L+SP
Sbjct: 66 DEDNVRAVKKQSEMLFVRGDSVVLISP 92
>gi|261189603|ref|XP_002621212.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239591448|gb|EEQ74029.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239613021|gb|EEQ90008.1| LSM domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 113
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 16/98 (16%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLH---------------AYDQHLNMILGDVEE 54
EPLDL+RLSLDE ++VKLR DREL+G+LH AYD H N++LGDVEE
Sbjct: 13 SEPLDLVRLSLDEVVFVKLRGDRELKGRLHVSGSGIPAIVVDLRMAYDSHCNLVLGDVEE 72
Query: 55 VVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ VE +DE+ +EI++T ++ LFVRGD V+L+SP
Sbjct: 73 TIYIVE-EDESEQEIIKTIKKQEEMLFVRGDSVVLISP 109
>gi|255953441|ref|XP_002567473.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589184|emb|CAP95324.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 96
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 71/95 (74%), Gaps = 4/95 (4%)
Query: 1 MASEEES---AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDAGGPSVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
VE DE EE +RT ++ LFVRGD V+L+SP
Sbjct: 61 VVEE-DENEEETLRTIKKQEEMLFVRGDSVVLISP 94
>gi|346975981|gb|EGY19433.1| hypothetical protein VDAG_09635 [Verticillium dahliae VdLs.17]
Length = 96
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A+EE + V EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LGDVEE + V+
Sbjct: 4 AAEENTHVSEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYVVDE 63
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ EE +T R LFVRGD V+L+SP
Sbjct: 64 --DDDEEEAKTISRKSEMLFVRGDSVVLISP 92
>gi|378726255|gb|EHY52714.1| hypothetical protein HMPREF1120_00923 [Exophiala dermatitidis
NIH/UT8656]
Length = 104
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
V EPLDL+RLSLDE ++V+LR DREL+G+LHAYD H N++LG+VEE + T+E DDE EE
Sbjct: 12 VSEPLDLVRLSLDEIVFVRLRGDRELKGRLHAYDSHCNLVLGEVEETIYTIEEDDEG-EE 70
Query: 69 IVRTTRRTVPFLFVRG 84
V+TT++ LFVRG
Sbjct: 71 TVKTTKKQSDMLFVRG 86
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 64/89 (71%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
EE+ EPLDL+RL +DE + VKLR DREL+G+LHAYD H N++LGDVEE + E ++
Sbjct: 2 EEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEE 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E E VRT ++ LFVRGD V+L++P
Sbjct: 62 EDQEPRVRTVKKQSEMLFVRGDSVVLIAP 90
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata
strain Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 63/84 (75%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
A+ EPLD+IRL+LDE IY+K ++ REL G+LHA+D+H NM+L DV E +TTV+ DD +
Sbjct: 6 ALHEPLDMIRLNLDEVIYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKN 65
Query: 68 EIVRTTRRTVPFLFVRGDGVILVS 91
E + T+R +FVRGD ++L+S
Sbjct: 66 ETTKVTKRDNGTIFVRGDSLVLLS 89
>gi|300120504|emb|CBK20058.2| Like-Sm ribonucleoprotein, core [Blastocystis hominis]
Length = 458
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 47/90 (52%), Positives = 63/90 (70%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V +P DLIRLSLDE + +K R RE+RGKL AYDQHLNM++ + +E T V +D ET
Sbjct: 369 SSVSQPFDLIRLSLDEEVVIKCRHGREIRGKLLAYDQHLNMVVSNAKETQTIVTVDPETN 428
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
E+ + R L++RGD VIL+SP +RT
Sbjct: 429 NEVKKNVVRNFEALYLRGDAVILISPLVRT 458
>gi|408389243|gb|EKJ68711.1| hypothetical protein FPSE_11107 [Fusarium pseudograminearum
CS3096]
Length = 96
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A EE V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + TV+
Sbjct: 4 AGEEPHHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDE 63
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ ++ ++T R LFVRGD V+L+SP
Sbjct: 64 --DDDDDELKTISRKSEMLFVRGDSVVLISP 92
>gi|358397340|gb|EHK46715.1| hypothetical protein TRIATDRAFT_299236 [Trichoderma atroviride
IMI 206040]
Length = 97
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
EE S V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + V+
Sbjct: 5 GEETSHVAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDD- 63
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DE + V+T R LFVRGD V+L+SP
Sbjct: 64 DEEESDEVKTISRKSEMLFVRGDSVVLISP 93
>gi|302891811|ref|XP_003044787.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
gi|256725712|gb|EEU39074.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
Length = 96
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 65/90 (72%), Gaps = 2/90 (2%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
EE V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + TV+
Sbjct: 5 GEESHHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDE- 63
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ ++ V+T R LFVRGD V+L+SP
Sbjct: 64 -DDEDDEVKTISRKSEMLFVRGDSVVLISP 92
>gi|402086284|gb|EJT81182.1| hypothetical protein GGTG_01166 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 95
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA E EP L+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE T
Sbjct: 1 MADSGEGQGNEPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE---THY 57
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPP 93
+ DE E ++T R + LFVRGD V+L+SP
Sbjct: 58 MQDEEDEADLKTVSRKLEMLFVRGDSVVLISPS 90
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 121
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S V+EP DLIRLSL+ER++VKLR DREL G LHAYD H+NMI+ DVEE + V++ +
Sbjct: 6 SGVQEPFDLIRLSLNERVFVKLRGDRELTGVLHAYDGHMNMIMSDVEETIMIVDVPADGV 65
Query: 67 ----EEIVRTTRRTVPFLFVRGDGVILV 90
++ +R + LFVRGDGVILV
Sbjct: 66 LLPGAGSIKVAKRRLEMLFVRGDGVILV 93
>gi|115387369|ref|XP_001211190.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195274|gb|EAU36974.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 97
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 5/96 (5%)
Query: 1 MASEEES----AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDAGSAPSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETI 60
Query: 57 TTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
VE D+ E I RT ++ LFVRGD V+L+SP
Sbjct: 61 YVVEDDENEEETI-RTIKKQEEMLFVRGDSVVLISP 95
>gi|67515531|ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
gi|40746210|gb|EAA65366.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
Length = 725
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVS 91
+E +RT ++ LFVR + +S
Sbjct: 69 QEHIRTIKKQEEMLFVRVNHCTCLS 93
>gi|296809782|ref|XP_002845229.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
gi|238842617|gb|EEQ32279.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
Length = 109
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-EDEAGE 70
Query: 68 EIVRTTRRTVPFLFVRG 84
E V+T ++ LFVRG
Sbjct: 71 ETVKTIKKQEEMLFVRG 87
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDET 65
SA EPLDL+RL LDE +YVKLR DREL+G+LHAYD H N++LGDV E + V E +D+
Sbjct: 9 SAPAEPLDLVRLCLDEVVYVKLRGDRELKGRLHAYDSHCNLVLGDVVETIYVVEESEDDD 68
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
EEIV+T + LFVRGD VIL+SP
Sbjct: 69 GEEIVKTVVKKSEMLFVRGDSVILISP 95
>gi|171680906|ref|XP_001905397.1| hypothetical protein [Podospora anserina S mat+]
gi|170940411|emb|CAP65637.1| unnamed protein product [Podospora anserina S mat+]
Length = 97
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 68/93 (73%), Gaps = 2/93 (2%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EE +V EPLDL+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE T ++
Sbjct: 5 AEEAPSVSEPLDLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE--TIYVVE 62
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
DE +E V+T R LFVRGD V+L+SP R
Sbjct: 63 DEENDEEVKTISRKSEMLFVRGDSVVLISPQSR 95
>gi|213407672|ref|XP_002174607.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
gi|212002654|gb|EEB08314.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
Length = 90
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 64/91 (70%), Gaps = 7/91 (7%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE-ID 62
E AV EPLDL+RL LDER++VKLR DREL G+LH NM+LGD EEV+T+VE +
Sbjct: 2 ESTQAVAEPLDLVRLCLDERVHVKLRGDRELFGRLH------NMVLGDAEEVITSVEDLV 55
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPP 93
T + I +T R+ LFVRGD VIL+SPP
Sbjct: 56 TGTVDGIPKTIRKHSEMLFVRGDSVILISPP 86
>gi|399216324|emb|CCF73012.1| unnamed protein product [Babesia microti strain RI]
Length = 93
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 61/89 (68%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E ++V++PLDLIRL+LDE +Y+K + +RE+ GKLHAYD+H N+IL D E +T + D
Sbjct: 2 ENVASVQQPLDLIRLTLDEYVYIKSKGNREITGKLHAYDEHCNIILEDAVETITVITEDP 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
ET E + LFVRGD +ILVSP
Sbjct: 62 ETGTESTSVNTKNSDVLFVRGDSIILVSP 90
>gi|367026602|ref|XP_003662585.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
gi|347009854|gb|AEO57340.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
Length = 96
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A +E +AV EPLDL+RL LDE + VKLR DREL+G+LHAYD H N++LGDVEE T+ +
Sbjct: 4 ARDEGNAVSEPLDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGDVEE---TIYV 60
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D+ +E V+T + LFVRGD V+L+SP
Sbjct: 61 VDDEDDEDVKTVSKKSEMLFVRGDSVVLISP 91
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 64/85 (75%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
++++PLD+IRL+LDE IY++ + RE+ G+LHAYD+H NMIL D +E +TT EI+ T
Sbjct: 5 GSLQQPLDMIRLNLDEVIYLRCKGGREIVGRLHAYDEHCNMILSDAKETITTAEIEPTTN 64
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVS 91
EEI ++ +R +F+RGD +IL+S
Sbjct: 65 EEIKKSVQRDSGTVFIRGDSLILLS 89
>gi|336260805|ref|XP_003345195.1| hypothetical protein SMAC_07871 [Sordaria macrospora k-hell]
gi|380088006|emb|CCC05133.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 97
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A E+ +V EP+DL+RL LDE + VKLR DREL+G+LHAYD H N++LG+VEE + V+
Sbjct: 4 AVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDD 63
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+D +++ +T R LFVRGD V+L+SP R+
Sbjct: 64 EDADEDDL-KTISRKSEMLFVRGDSVVLISPYTRS 97
>gi|326472596|gb|EGD96605.1| GTP-binding protein [Trichophyton tonsurans CBS 112818]
Length = 779
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE ++E E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-ENEAGE 70
Query: 68 EIVRTTRRTVPFLFVRG 84
E ++T ++ LFVRG
Sbjct: 71 ETIKTIKKQEEMLFVRG 87
>gi|320587366|gb|EFW99846.1| u6 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 99
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV-TTVEI 61
+++ + EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LGDVEE + T E
Sbjct: 5 ADDMAPAPEPLDLVKLLLDEPVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYITDED 64
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D++ E+ VRT R LFVRGD V+L+SP
Sbjct: 65 DEDESEQEVRTVSRKSEMLFVRGDSVVLISP 95
>gi|209879574|ref|XP_002141227.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556833|gb|EEA06878.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 106
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 59/87 (67%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EP+DLIRLSLDE++ VK R DREL G L+AYD H+NM+LG+V+E + ID+ T EE
Sbjct: 16 EPIDLIRLSLDEKVNVKCRGDRELEGILYAYDPHMNMVLGNVKETSQKITIDEVTGEEST 75
Query: 71 RTTRRTVPFLFVRGDGVILVSPPLRTA 97
R + LF+RGD VILV P +
Sbjct: 76 MKVTRRIEMLFLRGDLVILVKPAINIG 102
>gi|156089511|ref|XP_001612162.1| LSM domain containing protein [Babesia bovis]
gi|154799416|gb|EDO08594.1| LSM domain containing protein [Babesia bovis]
Length = 89
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
KEP+D+IR++LDER+Y+K + RE+ G+LHAYD+H NM+L D E T+VE+D T +E+
Sbjct: 3 KEPMDVIRVNLDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEV 62
Query: 70 VRTTRRTVPFLFVRGDGVILVS 91
T + +FVRGD +IL+S
Sbjct: 63 TTITSKDSGVVFVRGDALILLS 84
>gi|429850300|gb|ELA25589.1| u6 small nuclear ribonucleoprotein [Colletotrichum
gloeosporioides Nara gc5]
Length = 96
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+E S V+EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LG+VEE T +D
Sbjct: 5 GDETSHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEE--TIYVVD 62
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
++ +E V+T R LFVRGD V+L+SP
Sbjct: 63 EDEEDEEVKTISRKSEMLFVRGDSVVLISP 92
>gi|346320143|gb|EGX89744.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Cordyceps
militaris CM01]
Length = 96
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
++ S V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + V+
Sbjct: 5 ADGTSHVAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYGVDE- 63
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E EE +T R LFVRGD V+L+SP
Sbjct: 64 -EDDEEEAKTISRKSEMLFVRGDSVVLISP 92
>gi|66362586|ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|46229856|gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 95
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 60/87 (68%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDLIRLSLDE+++VK R +REL+G L+AYD H+NM+LG+VEE E +T
Sbjct: 6 EPLDLIRLSLDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSEK 65
Query: 71 RTTRRTVPFLFVRGDGVILVSPPLRTA 97
+ +R + LF+RGD +ILV P ++
Sbjct: 66 KLKKRRIEMLFLRGDLIILVKPAVKLG 92
>gi|119619949|gb|EAW99543.1| hCG1989832 [Homo sapiens]
Length = 68
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 49/64 (76%)
Query: 34 LRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPP 93
HAYDQHLNMILGD+EE VTT+EID+ETYEEI + + +P LFV+GD V+LV+PP
Sbjct: 5 FEADYHAYDQHLNMILGDMEETVTTIEIDEETYEEIYKPMKWNIPMLFVQGDVVVLVAPP 64
Query: 94 LRTA 97
LR
Sbjct: 65 LRVG 68
>gi|58259393|ref|XP_567109.1| Sm-like protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134107471|ref|XP_777620.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260314|gb|EAL22973.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223246|gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 95
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 60/86 (69%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S ++EPLDL++L+L ER+ +KLR DR + G LHAYD H+N+++ EE + V++ +E
Sbjct: 7 SQIQEPLDLVKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQ 66
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
R RRT LFVRGDGVIL+SP
Sbjct: 67 PLPPRIERRTAEMLFVRGDGVILLSP 92
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 5/84 (5%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+V EPL++I+L LDE++YVKLR RE+ GKLHAYD H N++LGD E ++TV+ ++E
Sbjct: 117 SVSEPLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNE--- 173
Query: 68 EIVRTTRRTVPFLFVRGDGVILVS 91
++T + P +++RGD VILV+
Sbjct: 174 --LKTQTKDRPMVYLRGDSVILVA 195
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 5/84 (5%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+V EPL++I+L LDE++YVKLR RE+ GKLHAYD H N++LGD E ++TV+ ++E
Sbjct: 2 SVSEPLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNE--- 58
Query: 68 EIVRTTRRTVPFLFVRGDGVILVS 91
++T + P +++RGD VILV+
Sbjct: 59 --LKTQTKDRPMVYLRGDSVILVA 80
>gi|405118137|gb|AFR92912.1| hypothetical protein CNAG_00781 [Cryptococcus neoformans var.
grubii H99]
Length = 95
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 62/92 (67%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M + S ++EPLDL++L+L ER+ +KLR DR + G LHAYD H+N+++ EE + V+
Sbjct: 1 MDAVANSQIQEPLDLVKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHIVD 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ +E R RR+ LFVRGDGVIL+SP
Sbjct: 61 VTEEGQPLPPRVERRSAEMLFVRGDGVILLSP 92
>gi|321250515|ref|XP_003191834.1| sm-like protein [Cryptococcus gattii WM276]
gi|317458301|gb|ADV20047.1| Sm-like protein, putative [Cryptococcus gattii WM276]
Length = 95
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 61/87 (70%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+S ++EPLDL++L+L ER+ +KLR DR + G LHAYD H+N+++ EE + +++ +E
Sbjct: 6 DSQIQEPLDLVKLALGERVLIKLRGDRIVTGILHAYDAHMNVVVSQAEESIHIIDVTEEG 65
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
RT RR LFVRGDGVIL+SP
Sbjct: 66 QPLPPRTERRNAEMLFVRGDGVILLSP 92
>gi|310789782|gb|EFQ25315.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
E+ + V+EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LG+VEE T +D
Sbjct: 5 GEDTTHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEE--TIYVVD 62
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
++ +E V+T R LFVRGD V+L+SP
Sbjct: 63 EDEEDEEVKTISRKSEMLFVRGDSVVLISP 92
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE-IVR 71
DLIRLSL ER+ +KLR DRE+ G LHAYD H+NM+L DV E +T VE+ + +E +R
Sbjct: 1 FDLIRLSLSERVLIKLRGDREVTGTLHAYDGHMNMVLSDVTESITIVEVPESPNQEPTIR 60
Query: 72 TTRRTVPFLFVRGDGVILV 90
+R LFVRGDGV+LV
Sbjct: 61 IVKRNCEMLFVRGDGVVLV 79
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
A +EPLD+IRL+LDE IY+K ++ REL G+LHA+D H NM+L +V E +TTV+ + T +
Sbjct: 6 AHQEPLDMIRLNLDEMIYLKCKNGRELIGRLHAFDDHCNMVLSEVTETITTVDGEPNTNQ 65
Query: 68 EIVRTTRRTVPFLFVRGDGVILVS 91
+ + TRR +FVRGD +IL+S
Sbjct: 66 QPNKVTRRDSRTVFVRGDSLILLS 89
>gi|167375897|ref|XP_001733767.1| snrnp sm protein [Entamoeba dispar SAW760]
gi|165904941|gb|EDR30063.1| snrnp sm protein, putative [Entamoeba dispar SAW760]
Length = 99
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 14/90 (15%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S +++ ++EP+DLI+LSLD+ I++KLR R+L+GKL A+DQHLN+IL DV
Sbjct: 21 SMQKTQIEEPIDLIKLSLDDNIFIKLRGGRKLKGKLRAFDQHLNIILTDV---------- 70
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ETY+E RT P L+VRGD V+L+SP
Sbjct: 71 NETYQE----KTRTFPVLYVRGDLVVLISP 96
>gi|226294169|gb|EEH49589.1| GTP-binding protein AGP-1 [Paracoccidioides brasiliensis Pb18]
Length = 576
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE+ E +
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVE-EDESERETI 72
Query: 71 RTTRRTVPFLFV 82
+T ++ LF+
Sbjct: 73 KTIKKQEEMLFL 84
>gi|116792190|gb|ABK26267.1| unknown [Picea sitchensis]
Length = 45
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/45 (95%), Positives = 45/45 (100%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHL 45
MA+EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHL
Sbjct: 1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHL 45
>gi|392576848|gb|EIW69978.1| hypothetical protein TREMEDRAFT_68409 [Tremella mesenterica DSM
1558]
Length = 95
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ EPLDL++LSL ER+++KLR DR L G LHAYD H+N++L VEE + V++ ++
Sbjct: 7 GTISEPLDLVKLSLGERVFIKLRGDRTLTGNLHAYDAHMNLVLSQVEENIHIVDVGEDGT 66
Query: 67 EEIVRTTRRTVPFLFVRGDGVIL 89
R RR LF+RGD VIL
Sbjct: 67 AAPPRIERRGFEMLFIRGDSVIL 89
>gi|303314473|ref|XP_003067245.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240106913|gb|EER25100.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037539|gb|EFW19476.1| U6 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869885|gb|EAS28419.2| U6 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 98
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 65/95 (68%), Gaps = 4/95 (4%)
Query: 1 MASEEESAV---KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E + EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LG E
Sbjct: 1 MADEADGGAPSFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLG-EVEETV 59
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
V +DE EEI++T +R LFVRGD V+L+SP
Sbjct: 60 YVVEEDENEEEIIKTIKRQEDMLFVRGDSVVLISP 94
>gi|294886769|ref|XP_002771844.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875644|gb|EER03660.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|302372346|gb|ADL28384.1| putative Sm-like RNA-binding protein [Perkinsus marinus ATCC
50439]
Length = 92
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 3/85 (3%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
+ EP +L++LSLDERI VK R DR LRG+L AYD HLNM+L +VEEV+ + +
Sbjct: 7 IDEPFELVKLSLDERIQVKCRGDRYLRGRLVAYDSHLNMVLSEVEEVIEPPVKEGVKHR- 65
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPP 93
R RR + +FVRGDG+ILV+PP
Sbjct: 66 --RPIRRDLDTIFVRGDGIILVNPP 88
>gi|258567110|ref|XP_002584299.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905745|gb|EEP80146.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 135
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 4/78 (5%)
Query: 1 MASEEESAV---KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA ++ A EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADGDDGAAPSFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TVEIDDETYEEIVRTTRR 75
VE +DE +EI++ R
Sbjct: 61 MVE-EDENEQEIIKVESR 77
>gi|406867312|gb|EKD20350.1| U6 snRNP-associated protein Lsm3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 97
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 64/94 (68%), Gaps = 3/94 (3%)
Query: 1 MASEEE--SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
MA E+ SA EPLDL+RL LDE ++VKLR DREL+G+LHAYD H N++LG E
Sbjct: 1 MADNEDGVSAPAEPLDLVRLCLDEVVFVKLRGDRELKGRLHAYDSHCNLVLG-DVEETVY 59
Query: 59 VEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
V +DE EE V+T + LFVRGD V+L+SP
Sbjct: 60 VVEEDEDEEETVKTIHKKSEMLFVRGDSVVLISP 93
>gi|46111709|ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
Length = 795
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A EE V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + TV+
Sbjct: 4 AGEEPHHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDE 63
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVI 88
+ ++ ++T R LFVR I
Sbjct: 64 --DDDDDELKTISRKSEMLFVRAGAFI 88
>gi|238880144|gb|EEQ43782.1| hypothetical protein CAWG_02031 [Candida albicans WO-1]
Length = 96
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 50/81 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDLIR LDE + VKLR REL+GKL YD H NM+L D EE + T DD++
Sbjct: 14 PLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAEETIYTSNEDDDSENTSEE 73
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ +FVRGD VIL+SP
Sbjct: 74 PIVKKTAMVFVRGDSVILISP 94
>gi|407038130|gb|EKE38950.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 78
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 62/88 (70%), Gaps = 14/88 (15%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+++ ++EP+DLI+LSLD+ +++KLR R+L+GKL A+DQHLN+IL +V E+
Sbjct: 2 QKTQIEEPIDLIKLSLDDNVFIKLRGGRKLKGKLRAFDQHLNIILTNVSEI--------- 52
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSP 92
Y+E RT P L++RGD VIL+SP
Sbjct: 53 -YQE----KTRTFPVLYIRGDLVILISP 75
>gi|302652112|ref|XP_003017916.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
gi|291181501|gb|EFE37271.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
Length = 193
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-EDEAGE 70
Query: 68 EIVR 71
E ++
Sbjct: 71 ETIK 74
>gi|302497389|ref|XP_003010695.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
gi|291174238|gb|EFE30055.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
Length = 193
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-EDEAGE 70
Query: 68 EIVR 71
E ++
Sbjct: 71 ETIK 74
>gi|443687705|gb|ELT90598.1| hypothetical protein CAPTEDRAFT_145207, partial [Capitella
teleta]
Length = 70
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 57/95 (60%), Gaps = 27/95 (28%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S + V+EPLDL+RLSLDERIYVK+R+DRELRG+LH + LN
Sbjct: 2 SRPVTTVEEPLDLVRLSLDERIYVKMRNDRELRGRLHVSNS-LN---------------- 44
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
T+R +P LFVRGDGVILVSPP RT
Sbjct: 45 ----------TKRIIPMLFVRGDGVILVSPPTRTG 69
>gi|67484430|ref|XP_657435.1| U6 snRNA-associated Sm-like protein LSm3 [Entamoeba histolytica
HM-1:IMSS]
gi|56474688|gb|EAL52049.1| U6 snRNA-associated Sm-like protein LSm3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702203|gb|EMD42886.1| U6 snrnaassociated Sm family LSm3 protein [Entamoeba histolytica
KU27]
Length = 78
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 62/88 (70%), Gaps = 14/88 (15%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+++ ++EP+DLI+LSLD+ +++KLR R+L+GKL A+DQHLN+IL +V E+
Sbjct: 2 QKTQIEEPIDLIKLSLDDNVFIKLRGGRKLKGKLRAFDQHLNIILTNVSEM--------- 52
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSP 92
Y+E RT P L++RGD VIL+SP
Sbjct: 53 -YQE----KTRTFPVLYIRGDLVILISP 75
>gi|322700593|gb|EFY92347.1| U6 snRNP-associated protein Lsm3 [Metarhizium acridum CQMa 102]
Length = 90
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 7/82 (8%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
++ V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + V+ D
Sbjct: 5 GDDTGHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDED 64
Query: 63 DETYEEIVRTTRRTVPFLFVRG 84
+E T R LFVRG
Sbjct: 65 EE-------TINRKSEMLFVRG 79
>gi|296005050|ref|XP_002808862.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
gi|225632259|emb|CAX64140.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
Length = 91
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 63/93 (67%), Gaps = 4/93 (4%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVEID 62
E+ + ++ PLD IRL+++E I++K + DREL GKL AYD HLNMIL +V E +V+ +
Sbjct: 2 EKIALIQNPLDYIRLNMEEEIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKEN 61
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
D EE V+ R + +FVRGD +ILVS ++
Sbjct: 62 D---EETVKKMERNLDMVFVRGDSIILVSSAMK 91
>gi|255727663|ref|XP_002548757.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
gi|240133073|gb|EER32629.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
Length = 92
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
E+ ++PLDLIR LDE + VKLR REL+GKL YD H NM+L D +E + +++ + +
Sbjct: 7 EQREDQQPLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAQEFIYSLDENSK 66
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ IV+ T +FVRGD VIL+SP
Sbjct: 67 IKDPIVKKT----DMVFVRGDSVILISP 90
>gi|156097859|ref|XP_001614962.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium vivax Sal-1]
gi|148803836|gb|EDL45235.1| U6 snRNA-associated Sm-like protein LSm3, putative [Plasmodium
vivax]
Length = 91
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E+ + ++ PLD IRL+++E +++K + DRE+RGKL AYD HLNMIL + E +++
Sbjct: 2 EKIALIQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVEN 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
+ EE V+ R + +FVRGD +ILVS +
Sbjct: 62 D--EESVKKIERNLDMVFVRGDSIILVSSATK 91
>gi|221053504|ref|XP_002258126.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807959|emb|CAQ38663.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 91
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E+ + ++ PLD IRL+++E +++K + DRE+RGKL AYD HLNMIL + E +++
Sbjct: 2 EKIALIQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQTVMEN 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
+ EE V+ R + +FVRGD +ILVS +
Sbjct: 62 D--EESVKKIERNLDMVFVRGDSIILVSSATK 91
>gi|241959048|ref|XP_002422243.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
gi|223645588|emb|CAX40247.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
Length = 96
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 8/85 (9%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV----EIDDETYE 67
PLDLIR LDE + VKLR REL+GKL YD H NM+L D +E + T + +D + E
Sbjct: 14 PLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAQETIYTSNEGGDSEDSSKE 73
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
IV+ T +FVRGD VIL+SP
Sbjct: 74 PIVKKT----AMVFVRGDSVILISP 94
>gi|322711294|gb|EFZ02868.1| U6 snRNP-associated protein Lsm3 [Metarhizium anisopliae ARSEF
23]
Length = 85
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 7/82 (8%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
++ V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LGDVEE + V+ D
Sbjct: 5 GDDTGHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYAVDED 64
Query: 63 DETYEEIVRTTRRTVPFLFVRG 84
+E T R LFVR
Sbjct: 65 EE-------TINRKSEMLFVRA 79
>gi|342872477|gb|EGU74840.1| hypothetical protein FOXB_14644 [Fusarium oxysporum Fo5176]
Length = 179
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + TV
Sbjct: 4 AGEEPHHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTV 61
>gi|389582457|dbj|GAB65195.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium cynomolgi
strain B]
Length = 91
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E+ + ++ PLD IRL+++E +++K + DRE+RGKL AYD HLNMIL + E T +
Sbjct: 2 EKIALIQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNARE--TYKQSVT 59
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
E EE ++ R + +FVRGD +ILVS +
Sbjct: 60 ENDEESIKKIERNLDMVFVRGDSIILVSSATK 91
>gi|121713870|ref|XP_001274546.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
gi|119402699|gb|EAW13120.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
Length = 74
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 3/62 (4%)
Query: 1 MASEEE---SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E+ S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDAGASSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TV 59
V
Sbjct: 61 VV 62
>gi|164657698|ref|XP_001729975.1| hypothetical protein MGL_2961 [Malassezia globosa CBS 7966]
gi|159103869|gb|EDP42761.1| hypothetical protein MGL_2961 [Malassezia globosa CBS 7966]
Length = 84
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 50/67 (74%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ + EP DLIRLSL ER+ VKLR DRE+RG LHAYD H+N+ILGDVEE + +++ ++T
Sbjct: 6 TGIHEPFDLIRLSLSERVLVKLRGDREMRGILHAYDGHMNLILGDVEETIYDMQVSEDTG 65
Query: 67 EEIVRTT 73
E ++
Sbjct: 66 AESIQVC 72
>gi|70997292|ref|XP_753396.1| U6 small nuclear ribonucleoprotein (Lsm3) [Aspergillus fumigatus
Af293]
gi|66851032|gb|EAL91358.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus Af293]
gi|159126877|gb|EDP51993.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 1 MASEEES---AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDTGAGSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TVEIDDETYEEIVRTTRRTVPF 79
VE D+ E I R V F
Sbjct: 61 VVEEDENEEETIRMADRLVVAF 82
>gi|340520073|gb|EGR50310.1| predicted protein [Trichoderma reesei QM6a]
Length = 75
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + V+ D+E +
Sbjct: 1 VAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDDDEED-SD 59
Query: 69 IVRTTRRTVPFLFVRG 84
V+T R LFVRG
Sbjct: 60 EVKTISRKSEMLFVRG 75
>gi|150866473|ref|XP_001386093.2| hypothetical protein PICST_63621 [Scheffersomyces stipitis CBS
6054]
gi|149387729|gb|ABN68064.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 88
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 8/87 (9%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
ES +EPLDLIR LDE + VKLR RE++G+L YD H NM+L + EE + + D+ET
Sbjct: 7 ESQQQEPLDLIRFQLDEFVLVKLRGAREMKGRLQGYDSHCNMVLSEAEEYIYSAG-DEET 65
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
+V+ T +FVRGD VIL+SP
Sbjct: 66 ---VVKKTE----MVFVRGDSVILISP 85
>gi|119478785|ref|XP_001259441.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
gi|119407595|gb|EAW17544.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
Length = 94
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 3/62 (4%)
Query: 1 MASEEES---AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDTGAGSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TV 59
V
Sbjct: 61 VV 62
>gi|440294421|gb|ELP87438.1| snrnp sm protein, putative [Entamoeba invadens IP1]
Length = 79
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 14/88 (15%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+++ V+EP+DL++LSLDE + VKLR +R+L+GKL A+DQHLN++L +V E +V
Sbjct: 2 QKTKVEEPIDLVKLSLDEVVLVKLRGNRQLKGKLRAFDQHLNLVLTEVTETYNSVS---- 57
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSP 92
R P L++RGD V++VSP
Sbjct: 58 ----------RDFPVLYIRGDLVVIVSP 75
>gi|50546547|ref|XP_500743.1| YALI0B11022p [Yarrowia lipolytica]
gi|49646609|emb|CAG82989.1| YALI0B11022p [Yarrowia lipolytica CLIB122]
Length = 94
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M + S EPLDLI LSL+E ++VKLR REL G LHAYD H +M+LG+VEE V
Sbjct: 1 MTDVDTSGGSEPLDLIGLSLNENVFVKLRGGRELYGLLHAYDIHCSMVLGNVEETVFEYV 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVS--PPLR 95
E ++ LFVRGD VILV+ PP R
Sbjct: 61 EGSPKLE----ARKKKSEMLFVRGDSVILVTSNPPKR 93
>gi|354548424|emb|CCE45160.1| hypothetical protein CPAR2_701720 [Candida parapsilosis]
Length = 90
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 53/88 (60%), Gaps = 7/88 (7%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
E +EPLDLIR LDE + VKLR RE +GKL YD H N++L D E + + D +
Sbjct: 7 EHKQQQEPLDLIRFQLDEYVIVKLRGAREFKGKLQGYDSHCNLVLSDATETIFS---DKD 63
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E I++ T +FVRGD VIL+SP
Sbjct: 64 GVEPIIKRTE----MVFVRGDSVILISP 87
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
Length = 130
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDLIR LDE + VKLR RE++GKL YD H NM+L D +E + +D
Sbjct: 54 EPLDLIRYQLDESVLVKLRGAREMKGKLQGYDSHCNMVLSDAQETIYGENEED------- 106
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
T + +FVRGD VIL+SP
Sbjct: 107 -TVVKKTEMVFVRGDSVILISP 127
>gi|380493327|emb|CCF33959.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
E+ + V+EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LG+VEE T +D
Sbjct: 5 GEDTTHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEE--TIYVVD 62
Query: 63 DETYEEIVRTTRRTVPFLFVRG 84
++ +E V+T R LFVRG
Sbjct: 63 EDEEDEDVKTISRKSEMLFVRG 84
>gi|448535532|ref|XP_003870996.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis Co 90-125]
gi|380355352|emb|CCG24870.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis]
Length = 91
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 7/88 (7%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
E +EPLDLIR LDE + VKLR RE +GKL YD H N++L D E + + D +
Sbjct: 7 EHKQQQEPLDLIRFQLDEYVIVKLRGAREFKGKLQGYDSHCNLVLSDATETIFS---DKD 63
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ I++ T +FVRGD VIL+SP
Sbjct: 64 GVDPIIKRTE----MVFVRGDSVILISP 87
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
E ++EPLDLIR LD+ + VKLR REL GKL YD H NM+L D E + D
Sbjct: 7 EHQQLQEPLDLIRFQLDDYVVVKLRGARELYGKLQGYDSHCNMVLSDATETIYGDSPD-- 64
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSPPL 94
+ ++ +FVRGD VIL+SP +
Sbjct: 65 -----TKPVKKKTDMVFVRGDSVILISPAI 89
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
E +EPLDL+R LDE + VKLR RE++GKL YD H NMIL D E + V E
Sbjct: 7 EQQQQEPLDLVRYQLDELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVP---EG 63
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
E + + T +FVRGD VIL+SP
Sbjct: 64 QEPVTKNTD----MVFVRGDSVILISP 86
>gi|440474314|gb|ELQ43063.1| hypothetical protein OOU_Y34scaffold00174g28 [Magnaporthe oryzae
Y34]
Length = 78
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA E+ EP L+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADSGEAQANEPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQD 60
Query: 61 IDDET 65
DDE+
Sbjct: 61 EDDES 65
>gi|444708206|gb|ELW49298.1| Ectonucleoside triphosphate diphosphohydrolase 1 [Tupaia chinensis]
Length = 1349
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 51 DVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
DVEE VTT+EID+ETYEEI ++ +R +P LFVRGDGV+LV+PPLR
Sbjct: 1078 DVEETVTTIEIDEETYEEIYKSMKRNIPMLFVRGDGVVLVTPPLR 1122
>gi|344303705|gb|EGW33954.1| hypothetical protein SPAPADRAFT_59353 [Spathaspora passalidarum
NRRL Y-27907]
Length = 80
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 8/86 (9%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S +EPLDLIR LDE + +KLR RE++GKL YD H NM+L + EE + DD
Sbjct: 2 STKEEPLDLIRFHLDEFVLIKLRGAREIKGKLQGYDSHCNMVLSEAEEYIYNDSNDD--- 58
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSP 92
T++T +FVRGD VIL+SP
Sbjct: 59 ----VETKKT-EMVFVRGDSVILISP 79
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+EPLDLIR LDE + VKLR RE++GKL YD H NM+L D E + D
Sbjct: 11 EEPLDLIRYQLDETVLVKLRGAREMKGKLQGYDSHCNMVLSDATEYIYAENQD------- 63
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
+ ++ +F+RGD VIL+SP
Sbjct: 64 -KPQGKSTDMVFIRGDSVILISP 85
>gi|367012788|ref|XP_003680894.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
gi|359748554|emb|CCE91683.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
Length = 85
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+++ PLDL++L+LDER+YVKLR REL G L A+D H N++L D E + +E +
Sbjct: 2 SLETPLDLLKLNLDERVYVKLRGARELIGTLQAFDSHCNIVLSDAVETIYQLESGE---- 57
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPP 93
+++T + +FVRGD V L++ P
Sbjct: 58 --LKSTEKNSEMIFVRGDSVTLITTP 81
>gi|45190730|ref|NP_984984.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|44983709|gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|374108207|gb|AEY97114.1| FAER125Cp [Ashbya gossypii FDAG1]
Length = 83
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL+RL+LDER+YVKLR R+L G L A+D H N++L D EE + + ID E ++
Sbjct: 5 PLDLLRLNLDERVYVKLRGARKLSGTLQAFDSHCNIVLSDAEETIYQL-IDGE-----LK 58
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
+ ++ +FVRGD V LV+
Sbjct: 59 SETKSSEMVFVRGDSVTLVTAA 80
>gi|85090627|ref|XP_958507.1| hypothetical protein NCU09512 [Neurospora crassa OR74A]
gi|28919876|gb|EAA29271.1| predicted protein [Neurospora crassa OR74A]
Length = 168
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+ +V EP+DL+RL LDE + VKLR DREL+G+LHAYD H N++LG+VEE + V
Sbjct: 4 AVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVV 61
>gi|366997500|ref|XP_003678512.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
gi|342304384|emb|CCC72174.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
Length = 84
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 6/86 (6%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+++ PLDL++L+LDE++YVKLR R L G L A+D H N++L D E + +E D
Sbjct: 2 SLETPLDLLKLNLDEKVYVKLRGARSLTGTLQAFDSHCNIVLSDAVETIYELEDGD---- 57
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPP 93
+++T R +FVRGD V L++ P
Sbjct: 58 --LKSTERQSEMIFVRGDTVTLITTP 81
>gi|336469053|gb|EGO57215.1| hypothetical protein NEUTE1DRAFT_121723 [Neurospora tetrasperma
FGSC 2508]
Length = 168
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+ +V EP+DL+RL LDE + VKLR DREL+G+LHAYD H N++LG+VEE + V
Sbjct: 4 AVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVV 61
>gi|350291326|gb|EGZ72540.1| hypothetical protein NEUTE2DRAFT_158467 [Neurospora tetrasperma
FGSC 2509]
Length = 163
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+ +V EP+DL+RL LDE + VKLR DREL+G+LHAYD H N++LG+VEE + V
Sbjct: 4 AVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVV 61
>gi|71030066|ref|XP_764675.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351631|gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
++EPLD+IRL+LDE IY+K ++ REL G+L A+D+H NM+L +V E +TTVE+D+ +
Sbjct: 6 TLQEPLDMIRLNLDEVIYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTVELDNNSKN 65
Query: 68 EIVR 71
E +
Sbjct: 66 ETTK 69
>gi|83315999|ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23490948|gb|EAA22599.1| Putative Ribonucleoprotein [Plasmodium yoelii yoelii]
Length = 104
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 11/95 (11%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLH---------AYDQHLNMILGDVEEVVTTVE 60
K PLD IRL+++E I++K + DREL G L AYD HLNMIL + +E V
Sbjct: 12 KGPLDYIRLNMEEEIFLKCKGDRELTGTLDVRKWIYIIIAYDNHLNMILSNAKEKYKQVT 71
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 95
I++ EE V+ R + +FVRGD +ILVS +
Sbjct: 72 IENN--EECVKQIERNLDMVFVRGDSIILVSSAAK 104
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 58/82 (70%), Gaps = 10/82 (12%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLD+++ S+ ++IY+K+R++ EL+G L +YD HLNMI+ EE +++E +
Sbjct: 6 EPLDVLKFSIAQQIYIKMRNNIELKGTLVSYDNHLNMIISKAEET---------SFQEGI 56
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
+ T+R + L++RGDG+IL+SP
Sbjct: 57 K-TKRKLDALYLRGDGIILISP 77
>gi|366998846|ref|XP_003684159.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
gi|357522455|emb|CCE61725.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 6/87 (6%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
++ PLDL++L+LDER+YVKLR REL G L A+D H N +L D E + + ID E
Sbjct: 2 SLATPLDLLKLNLDERVYVKLRGARELVGTLQAFDSHCNFVLSDAVETIYQL-IDGE--- 57
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPL 94
+++ ++ +FVRGD V L++ PL
Sbjct: 58 --LKSREKSSEMIFVRGDTVALITTPL 82
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 57/86 (66%), Gaps = 6/86 (6%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+++ PLDL++L+LDE++YVKLR REL G L A+D H N++L D E + + +D E
Sbjct: 2 SLETPLDLLKLNLDEKVYVKLRGARELVGILQAFDSHCNIVLSDAVETIYEL-VDGE--- 57
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPP 93
+++ +T LFVRGD V L++ P
Sbjct: 58 --LKSNEKTSEMLFVRGDTVTLITTP 81
>gi|119174705|ref|XP_001239694.1| hypothetical protein CIMG_09315 [Coccidioides immitis RS]
Length = 108
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
Query: 1 MASEEESAV---KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E + EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LG E
Sbjct: 1 MADEADGGAPSFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLG-EVEETV 59
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGD----GVILVSP 92
V +DE EEI++T +R LFVR + GV SP
Sbjct: 60 YVVEEDENEEEIIKTIKRQEDMLFVRANASPTGVNNSSP 98
>gi|365991154|ref|XP_003672406.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
gi|343771181|emb|CCD27163.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
Length = 85
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+++ PLDL++L+LDE++YVKLR R L G L A+D H N++L D E T E+DDE
Sbjct: 2 SLETPLDLLKLNLDEQVYVKLRGARSLVGTLQAFDSHCNIVLSDAIE--TIYELDDEGD- 58
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPP 93
+++ R +FVRGD V L++ P
Sbjct: 59 --LQSVERNSEMIFVRGDTVTLITTP 82
>gi|254579134|ref|XP_002495553.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
gi|238938443|emb|CAR26620.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
Length = 85
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
++ PLDL++L+LDER+YVKLR REL G L A+D H N++L D E + + +D E
Sbjct: 2 SLDAPLDLLKLNLDERVYVKLRGARELTGTLQAFDSHCNIVLSDAVESIYEL-VDGE--- 57
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPP 93
+++T ++ +FVRGD V L++
Sbjct: 58 --LKSTEKSSEMVFVRGDSVTLITAA 81
>gi|50303649|ref|XP_451766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640898|emb|CAH02159.1| KLLA0B05203p [Kluyveromyces lactis]
Length = 83
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+YVKLR REL G L A+D H N++L D +E + E E ++
Sbjct: 5 PLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIY------ELVEGDLK 58
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
TT R +FVRG V LV+ P
Sbjct: 59 TTERFSEMIFVRGGLVALVTTP 80
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
Length = 82
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 6/84 (7%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
++ PLDL++L+LDE+IYVKLR REL G L A+D H N++L D +E E +
Sbjct: 2 SLDAPLDLLKLNLDEKIYVKLRGARELSGILQAFDSHCNIVLSDA------IETKYELVD 55
Query: 68 EIVRTTRRTVPFLFVRGDGVILVS 91
+++T R LFVRGD V L++
Sbjct: 56 GELKSTERNSEMLFVRGDSVTLIT 79
>gi|363748022|ref|XP_003644229.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887861|gb|AET37412.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
Length = 83
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL+RL+LDE++YVKLR R+L G L A+D H N++L D EE + E + +R
Sbjct: 5 PLDLLRLNLDEKVYVKLRGARKLTGTLQAFDSHCNIVLSDAEETIY------ELVDGNLR 58
Query: 72 TTRRTVPFLFVRGDGVILVS 91
+T +FVRGD V LV+
Sbjct: 59 FETKTSEMIFVRGDSVTLVT 78
>gi|401624580|gb|EJS42636.1| lsm3p [Saccharomyces arboricola H-6]
Length = 89
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E + + EE+
Sbjct: 4 PLDLLKLNLDERVYIKLRGARSLVGTLQAFDSHCNIVLSDAVETIYQL-----NNEELSE 58
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
+ RR +FVRGD V L+S P
Sbjct: 59 SERR-CEMVFVRGDTVTLISTP 79
>gi|401838766|gb|EJT42227.1| LSM3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 89
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSE--- 58
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
+ R +FVRGD V L+S P
Sbjct: 59 -SERRCEMVFVRGDTVTLISTP 79
>gi|403214565|emb|CCK69066.1| hypothetical protein KNAG_0B06380 [Kazachstania naganishii CBS
8797]
Length = 83
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+L++L+LDER+YVKLR R + G L A+D H N++L D VE E + +R
Sbjct: 5 PLNLLKLNLDERVYVKLRGARSMAGTLQAFDSHCNIVLSDA------VETRYELVDGELR 58
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
+T R +FVRGD V LV+ P
Sbjct: 59 STERPSEMVFVRGDSVTLVTTP 80
>gi|170785183|pdb|3BW1|A Chain A, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
gi|170785184|pdb|3BW1|B Chain B, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
Length = 96
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E
Sbjct: 11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSE--- 65
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
+ R +F+RGD V L+S P
Sbjct: 66 -SERRCEMVFIRGDTVTLISTP 86
>gi|398366287|ref|NP_013543.3| Lsm3p [Saccharomyces cerevisiae S288c]
gi|12230246|sp|P57743.1|LSM3_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm3; AltName:
Full=SmX4 protein
gi|151940954|gb|EDN59336.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405474|gb|EDV08741.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256271118|gb|EEU06213.1| Lsm3p [Saccharomyces cerevisiae JAY291]
gi|259148415|emb|CAY81662.1| Lsm3p [Saccharomyces cerevisiae EC1118]
gi|285813843|tpg|DAA09739.1| TPA: Lsm3p [Saccharomyces cerevisiae S288c]
gi|349580131|dbj|GAA25292.1| K7_Lsm3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297940|gb|EIW09039.1| Lsm3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 89
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSE--- 58
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
+ R +F+RGD V L+S P
Sbjct: 59 -SERRCEMVFIRGDTVTLISTP 79
>gi|365759243|gb|EHN01044.1| Lsm3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 126
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSE--- 58
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
+ R +FVRGD V L+S P
Sbjct: 59 -SERRCEMVFVRGDTVTLISTP 79
>gi|302309894|ref|XP_002999599.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049204|emb|CAR58072.1| unnamed protein product [Candida glabrata]
Length = 85
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
++ PLDL++L+LDER+YVKLR R + G L A+D H N++L D E + + +D E
Sbjct: 2 SLSTPLDLLKLNLDERVYVKLRGARAMEGVLQAFDSHCNIVLSDAVETIYEL-VDGE--- 57
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
+++ R +FVRGD V L++
Sbjct: 58 --LKSQERASEMIFVRGDSVTLITA 80
>gi|410080239|ref|XP_003957700.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
gi|372464286|emb|CCF58565.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
Length = 85
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDE +YVKLR R L G L A+D H N++L D E + ++ + E +
Sbjct: 5 PLDLLKLNLDETVYVKLRGARALTGTLQAFDSHCNIVLSDAVETIYELDGNGE-----LS 59
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
+ + +FVRGD V L++ P
Sbjct: 60 SKEKKSEMIFVRGDSVTLITTP 81
>gi|448090794|ref|XP_004197162.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|448095234|ref|XP_004198193.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359378584|emb|CCE84843.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359379615|emb|CCE83812.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+EP DL+R LDE + VKLR RE++G+L YD H NM+L D E + D E
Sbjct: 11 QEPFDLVRYQLDELVLVKLRGAREMKGRLQGYDSHCNMVLSDAVEYIY-----DLGEEVN 65
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
T + +FVRGD VIL++P
Sbjct: 66 SNPTVKKSEMVFVRGDSVILINP 88
>gi|255714250|ref|XP_002553407.1| KLTH0D16082p [Lachancea thermotolerans]
gi|238934787|emb|CAR22969.1| KLTH0D16082p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDE+++VKLR RE+ G L A+D H N++L + E + + +D E ++
Sbjct: 4 PLDLLKLNLDEKVFVKLRGAREMTGVLQAFDSHCNIVLSNATETIYEL-VDGE-----LK 57
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
++ + +FVRGD V L++ P
Sbjct: 58 SSTKGSEMVFVRGDSVTLITTP 79
>gi|358255644|dbj|GAA57330.1| U6 snRNA-associated Sm-like protein LSm3 [Clonorchis sinensis]
Length = 50
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 38/44 (86%)
Query: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
+R +RELRG LHA+D HLNMILG+ EE VTT+EID+ET+EE+ +
Sbjct: 1 MRHNRELRGTLHAFDSHLNMILGNAEETVTTLEIDEETFEEVYK 44
>gi|123493455|ref|XP_001326296.1| Sm protein [Trichomonas vaginalis G3]
gi|121909208|gb|EAY14073.1| Sm protein [Trichomonas vaginalis G3]
Length = 84
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
P D IRLS+++R+ VK++ +EL G LHAYD+H N+ILGDV E + ++ + + +
Sbjct: 7 PQDYIRLSMEKRVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNG----KFIP 62
Query: 72 TTRRTVPFLFVRGDGVILVS 91
+ + LFVRGD ++ ++
Sbjct: 63 VRQNQIDMLFVRGDRIVSIA 82
>gi|414879543|tpg|DAA56674.1| TPA: hypothetical protein ZEAMMB73_233599, partial [Zea mays]
Length = 67
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLH 39
VKEPLDLIRLSLDERIYVKLRSDRELRGKLH
Sbjct: 37 VKEPLDLIRLSLDERIYVKLRSDRELRGKLH 67
>gi|194742710|ref|XP_001953844.1| GF17032 [Drosophila ananassae]
gi|190626881|gb|EDV42405.1| GF17032 [Drosophila ananassae]
Length = 301
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/39 (71%), Positives = 35/39 (89%), Gaps = 1/39 (2%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLH-AYDQHLN 46
VKEPLDLIRLSLDE++YVK+R++RELRG+LH YD +N
Sbjct: 164 VKEPLDLIRLSLDEKVYVKMRNERELRGRLHRRYDADVN 202
>gi|145535864|ref|XP_001453665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421387|emb|CAK86268.1| unnamed protein product [Paramecium tetraurelia]
Length = 103
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 3 SEEESAVKEPLDL--IRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
++EE+ K P L I +S + ++ ++LR++R+L G++ A+D+H+NMIL +V E+ T +
Sbjct: 9 AQEETLEKGPFGLLTITVSHNTQVLIELRNNRKLLGRVKAFDRHMNMILENVTEMWTEIP 68
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ + R +P +F+RGD VI +
Sbjct: 69 KGNKGKKAHATNKERFIPKMFLRGDSVIYI 98
>gi|448361838|ref|ZP_21550451.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
gi|445649518|gb|ELZ02455.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
Length = 78
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G+L YDQH+N++L D + E D T E +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETDTATAESVED 64
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 65 TT-------IIRGDNVVSITP 78
>gi|395516688|ref|XP_003762519.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Sarcophilus harrisii]
Length = 44
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 32/33 (96%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLH 39
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LH
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH 44
>gi|444729623|gb|ELW70034.1| Homeobox protein orthopedia [Tupaia chinensis]
Length = 138
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 36 GKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFV 82
++ AY+QHLN IL DV+E VTT+E D+ETYE++ ++T+R +P LF+
Sbjct: 93 SRVQAYEQHLN-ILADVKETVTTIETDEETYEDVYKSTKRNIPVLFI 138
>gi|123498225|ref|XP_001327354.1| Sm protein [Trichomonas vaginalis G3]
gi|121910282|gb|EAY15131.1| Sm protein [Trichomonas vaginalis G3]
Length = 83
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
P D IRLS+++R+ V+L R L G LHAYD+H N+I+GDV E + + +D + V
Sbjct: 7 PQDYIRLSMEKRVKVQLEG-RVLEGVLHAYDEHYNIIIGDVTE--SLMGLDKNGMQ--VA 61
Query: 72 TTRRTVPFLFVRGDGVILVS 91
+R + LFVRGD ++ ++
Sbjct: 62 VNQRQIDMLFVRGDRIVSIA 81
>gi|448717214|ref|ZP_21702669.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
gi|445786018|gb|EMA36794.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
Length = 78
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV D+E E I
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGNLAGYDQHMNLVLEDVASAADGTVADEEREEPIED 64
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 65 TT-------IIRGDNVVSITP 78
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M +++ PLD++ SL+ ++ +KL+ RE RG L+++D H+N++L D EE+
Sbjct: 1 MNAQKNLNTSRPLDVLGKSLNSQVLIKLKGGREFRGVLNSFDMHMNLVLNDAEEL----- 55
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E+ E + R + + +RGD ++ +SP
Sbjct: 56 ---ESGE-----SSRRLGVVLIRGDNIVYISP 79
>gi|448348652|ref|ZP_21537500.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|448369167|ref|ZP_21555934.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
gi|445642313|gb|ELY95381.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|445651710|gb|ELZ04618.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
Length = 78
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G+L YDQH+N++L D + E + T E +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETEPATAESVED 64
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 65 TT-------IIRGDNVVSITP 78
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 14/74 (18%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL++ + VKL+ RE+RG+L +YD HLN++L E EEI T R +
Sbjct: 12 SLEKNVLVKLKGGREIRGQLKSYDYHLNLVL--------------ENAEEIRGTRTRQLG 57
Query: 79 FLFVRGDGVILVSP 92
+ VRGD VILVSP
Sbjct: 58 TIIVRGDNVILVSP 71
>gi|429192031|ref|YP_007177709.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|448324725|ref|ZP_21514137.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
gi|429136249|gb|AFZ73260.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|445617688|gb|ELY71281.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
Length = 75
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV DDE+ E+
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVTSAADESVTDDESIEDTT- 63
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+RGD V+ ++P
Sbjct: 64 ---------IIRGDNVVSITP 75
>gi|254166962|ref|ZP_04873815.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289597064|ref|YP_003483760.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623818|gb|EDY36380.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289534851|gb|ADD09198.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 75
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 13/83 (15%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
+PL ++ SL++ + V ++ ++E RG L YDQHLN++L +VEE++
Sbjct: 6 KPLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIING------------ 53
Query: 71 RTTRRTVPFLFVRGDGVILVSPP 93
++ + VRGD VI +SPP
Sbjct: 54 -ESKGVHNVVIVRGDNVIYISPP 75
>gi|432329090|ref|YP_007247234.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135799|gb|AGB05068.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 75
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 13/83 (15%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
+PL ++ SL++ + V ++ ++E RG L YDQHLN++L +VEE++
Sbjct: 6 KPLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIING------------ 53
Query: 71 RTTRRTVPFLFVRGDGVILVSPP 93
++ + VRGD VI +SPP
Sbjct: 54 -ESKGVHNVVIVRGDNVIYISPP 75
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD++ SL+ + V+L+ R RG+L YD H+N++L E EEI
Sbjct: 3 QRPLDILNESLNSPVIVRLKDGRAFRGELQGYDIHMNLVL--------------ENTEEI 48
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
T R + + VRGD V+ +SP
Sbjct: 49 AEGTARKIGAVIVRGDNVVYISP 71
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 7 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL------- 59
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E TRR + + +RGD ++ +SP
Sbjct: 60 -----EDGEVTRR-LGTVLIRGDNIVYISP 83
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 2 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL------- 54
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E TRR + + +RGD ++ +SP
Sbjct: 55 -----EDGEVTRR-LGTVLIRGDNIVYISP 78
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+ + PLD + +L+ ++ +KL+ +E RG L ++D H+N++L D EE+
Sbjct: 5 KNNNNTSRPLDALGQALNSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEI-------- 56
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ E I R + + VRGD ++ +SP
Sbjct: 57 KDGESICR-----LGVVLVRGDNIVYISP 80
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 5 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL------- 57
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E TRR + + +RGD ++ +SP
Sbjct: 58 -----EDGEVTRR-LGTVLIRGDNIVYISP 81
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 13/92 (14%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M+ ++ PLD++ +L+ ++ +KL+ RE RG L ++D H+N++L D EE+
Sbjct: 1 MSVQKNVNTSRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEEL----- 55
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E+ E + R + + +RGD ++ +SP
Sbjct: 56 ---ESGE-----SSRRLGVVLIRGDNIVYISP 79
>gi|406602048|emb|CCH46368.1| hypothetical protein BN7_5961 [Wickerhamomyces ciferrii]
Length = 77
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 20/84 (23%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
EPLDLIRL LDE+ AYD H N++L D E + +E E +E+
Sbjct: 11 SEPLDLIRLLLDEQ----------------AYDSHCNIVLSDAIETIYDIE---EGSDEL 51
Query: 70 VRTTRRTVPFLFVRGDGVILVSPP 93
TT+ + LFVRGD VIL+S P
Sbjct: 52 KSTTKNS-EILFVRGDSVILISSP 74
>gi|384247738|gb|EIE21224.1| small nuclear ribonucleo protein Sm D2 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ S+ + ++ + R++R+L G++ A+D+H NMIL +V+E+ T +
Sbjct: 16 EEELFRTGPLSVLTTSVKSNSQVLINCRNNRKLLGRVKAFDRHCNMILENVKEMWTEIPK 75
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ + + R +P LF+RGD VILV
Sbjct: 76 TGKGKKGSTPVNKDRFIPKLFIRGDSVILV 105
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL+ + VKL+ ++E+RG L +YDQH+N++L D EE+ + + + +
Sbjct: 12 SLNNLVLVKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSD-------------GSGKKLG 58
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VIL+SP
Sbjct: 59 TIVIRGDNVILISP 72
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL+ + VKL+ ++E+RG L +YDQH+N++L D EE+ + + + +
Sbjct: 12 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-------------GSGKKLG 58
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VIL+SP
Sbjct: 59 TIVIRGDNVILISP 72
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL+ + VKL+ ++E+RG L +YDQH+N++L D EE+ + + + +
Sbjct: 17 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-------------GSGKKLG 63
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VIL+SP
Sbjct: 64 TIVIRGDNVILISP 77
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL+ + VKL+ ++E+RG L +YDQH+N++L D EE+ + + + +
Sbjct: 15 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-------------GSGKKLG 61
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VIL+SP
Sbjct: 62 TIVIRGDNVILISP 75
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL + VKL+ ++E+RG L +YDQH+N++L D EE+ + + + +
Sbjct: 12 SLGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD-------------GSGKKIG 58
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VIL+SP
Sbjct: 59 TIVIRGDNVILISP 72
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L+ ++ +KL+ RE RG L ++D H+N++L D EE+ E+ E
Sbjct: 32 PLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEEL--------ESGE---- 79
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ R + + +RGD ++ +SP
Sbjct: 80 -SSRRLGVVLIRGDNIVYISP 99
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L + + +KL+ +RE+RGKL +YDQHLN++L D EE+ + R +
Sbjct: 13 LGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIREN-------------GSTRKLGT 59
Query: 80 LFVRGDGVILVSP 92
+ +RGD VIL+SP
Sbjct: 60 IVIRGDTVILISP 72
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 13/73 (17%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L + + +KL+ +RE+RGKL +YDQHLN++L D EE ++ D T R +
Sbjct: 13 LGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEE----IKEDGST---------RKLGT 59
Query: 80 LFVRGDGVILVSP 92
+ +RGD VIL+SP
Sbjct: 60 IVIRGDTVILISP 72
>gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|42571273|ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145332931|ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|28466881|gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
gi|110743879|dbj|BAE99774.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255774|gb|AEC10868.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255775|gb|AEC10869.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646880|gb|AEE80401.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 108
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 72
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R R + +F+RGD VI+V
Sbjct: 73 KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 103
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 13/79 (16%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+++ + +KL+ + +RG L +DQH+N++L EE + ++ ET RT+
Sbjct: 13 SINKVVLIKLKGGKAIRGNLLGFDQHMNLLLESSEE----IPVEGET---------RTLG 59
Query: 79 FLFVRGDGVILVSPPLRTA 97
+ VRGD V+++SPP TA
Sbjct: 60 TIVVRGDNVVIISPPPATA 78
>gi|18407411|ref|NP_566107.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145331435|ref|NP_001078076.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145339793|ref|NP_567134.3| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20196966|gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20197310|gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255773|gb|AEC10867.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255776|gb|AEC10870.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646879|gb|AEE80400.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 14 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R R + +F+RGD VI+V
Sbjct: 74 KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104
>gi|297821194|ref|XP_002878480.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324318|gb|EFH54739.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 109
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 14 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R R + +F+RGD VI+V
Sbjct: 74 KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M ++ ++ PLD + SL+ + ++L+ +RE RG L ++D H+N++L D EE+
Sbjct: 2 MEVNKQKNIQRPLDTLGKSLNSPVLIRLKGEREFRGILKSFDLHMNLVLNDAEEI----- 56
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E E R + + +RGD ++ +SP
Sbjct: 57 ---ENGE-----VTRKLGTVLIRGDNIVYISP 80
>gi|253748557|gb|EET02611.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
intestinalis ATCC 50581]
Length = 126
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 14/90 (15%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
AS E + PL L++ SL++RI + L+++ + G L ++D+H+N+IL + EE +
Sbjct: 43 ASPEYTEFANPLYLLKTSLEDRITILLQNNSSVTGLLASFDEHMNIILINAEETGHPL-- 100
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVS 91
R P LF+RGD +I V+
Sbjct: 101 ------------NRFFPLLFIRGDSIIFVT 118
>gi|297824871|ref|XP_002880318.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
gi|21554692|gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|21592784|gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|297326157|gb|EFH56577.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
Length = 105
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 10 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 69
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R R + +F+RGD VI+V
Sbjct: 70 KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 100
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PLD++ +L+ + V+LR RE RG+L YD H+N++L + EE+ EI
Sbjct: 3 NRPLDILNNALNTPVIVRLRGSREFRGELQGYDVHMNLVLDNAEEL---------NDGEI 53
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
VR V +RGD V+ VSP
Sbjct: 54 VRKLGSVV----IRGDNVVYVSP 72
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 13/84 (15%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
V+ PLD + S++ + +KL+ DRE RG L ++D H+N++L D EE+ D E
Sbjct: 6 VQRPLDALGKSVNSPVLIKLKGDREFRGILKSFDLHMNLVLNDAEELQ-----DGE---- 56
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
TRR + + +RGD ++ +SP
Sbjct: 57 ---VTRR-LGVVLIRGDNIVYISP 76
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL + VKL+ D+ +RG L +YD H+N++L + EEV++ D T R V
Sbjct: 16 SLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMS----DGST---------RKVG 62
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VILVSP
Sbjct: 63 TIIIRGDNVILVSP 76
>gi|212720721|ref|NP_001132149.1| uncharacterized protein LOC100193568 [Zea mays]
gi|194693576|gb|ACF80872.1| unknown [Zea mays]
gi|414586342|tpg|DAA36913.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
gi|414586343|tpg|DAA36914.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 105
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 59/100 (59%), Gaps = 10/100 (10%)
Query: 1 MASEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
MA E E+ KE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +
Sbjct: 1 MADENEAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 52 VEEVVTTVEIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
V E+ T V + ++ + + R + +F+RGD VI+V
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 100
>gi|361127402|gb|EHK99371.1| putative GTP-binding protein 2 [Glarea lozoyensis 74030]
Length = 423
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMI 48
V EPLDL+RL LDE ++VKLR DREL+G+LHA + + +
Sbjct: 12 VSEPLDLVRLCLDEVVFVKLRGDRELKGRLHALSEFADYV 51
>gi|162606564|ref|XP_001713312.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
gi|12580778|emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
Length = 82
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P D I + D+ + + LR+++ + GK+ YD+HLN++L +V E ++ E + E+
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENVNE----IKFVGENFSEL 58
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
++ + +P +F+RGD ++L+
Sbjct: 59 IKIKSKFIPKVFLRGDNIVLI 79
>gi|448303276|ref|ZP_21493225.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
gi|445593061|gb|ELY47239.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
Length = 75
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV T+ I DE V
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDV-----TIPIGDE-----VE 54
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ +RGD V+ ++P
Sbjct: 55 SESPAEDTTIIRGDNVVSITP 75
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL + V+L+ RE RG L YD H+N++L D EE+ E+VR
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG---------EVVR 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KVGSVV----IRGDTVVFVSP 72
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 5 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL------- 57
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVS 91
E TRR + + +RGD ++ +S
Sbjct: 58 -----EDGEVTRR-LGTVLIRGDNIVYIS 80
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 13/78 (16%)
Query: 15 LIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR 74
L+ S+ + VKL+ ++E+RG L +YDQH+N++L D +VEI + E+ + T
Sbjct: 8 LLAESVGSLVLVKLKGNKEVRGYLKSYDQHMNLVLSD------SVEIQNNNDEKKMGT-- 59
Query: 75 RTVPFLFVRGDGVILVSP 92
+ +RGD VIL+SP
Sbjct: 60 -----IVIRGDNVILISP 72
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 5 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL------- 57
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVS 91
E TRR + + +RGD ++ +S
Sbjct: 58 -----EDGEVTRR-LGTVLIRGDNIVYIS 80
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 10 KEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
K PLD++ L+ + + V L+ RELRG L YD H+N++L + EE
Sbjct: 3 KRPLDILDQVLNRQPVIVSLKGGRELRGVLQGYDVHMNLVL--------------DKAEE 48
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPL 94
I R+V L VRGD VI +SP L
Sbjct: 49 IEGGQSRSVGTLIVRGDNVIYISPSL 74
>gi|448356655|ref|ZP_21545382.1| Sm ribonucleoprotein-like protein [Natrialba chahannaoensis JCM
10990]
gi|445652767|gb|ELZ05650.1| Sm ribonucleoprotein-like protein [Natrialba chahannaoensis JCM
10990]
Length = 81
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 16/87 (18%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL------GDVEEVVTTVEIDDET 65
PLD++ SL ER+ V+L+S E G+L YDQH+N++L GD ++ T + T
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVLEVAADGGDSDDATET----EST 60
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
E V T +RGD V+ ++P
Sbjct: 61 AAEPVEDT------TIIRGDNVVSITP 81
>gi|116191555|ref|XP_001221590.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88181408|gb|EAQ88876.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 117
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAY 41
+E SAV EPLDL+RL LDE + VKLR DREL+G+LH +
Sbjct: 6 DEGSAVSEPLDLVRLLLDEVVCVKLRGDRELKGRLHNH 43
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 10 KEPLDLIRLSLD-ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
K PLD++ L+ E + V L+ DRELRG L YD H+N++L + EE
Sbjct: 3 KRPLDILDQVLNGEPVIVSLKGDRELRGVLQGYDVHMNLVL--------------DKAEE 48
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
+ + + L VRGD VI +SP
Sbjct: 49 VTDGATQKIGTLIVRGDNVIYISP 72
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 5 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL------- 57
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVS 91
E TRR + + +RGD ++ +S
Sbjct: 58 -----EDGEVTRR-LGTVLIRGDNIVYIS 80
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L+ + V+L+ RE RG L YD H+N++L + EE+ EI+R
Sbjct: 5 PLDILNNALNTAVIVRLKGAREFRGTLQGYDVHMNLVLDEAEEI---------KEGEIIR 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V VRGD V+ VSP
Sbjct: 56 KIGSVV----VRGDNVVYVSP 72
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+ + + VKL+ ++E+RGKL +YD HLN++L D EE+ + R +
Sbjct: 12 SMGQTVLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELFPDGQ-------------ARKLG 58
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VI++SP
Sbjct: 59 TVIIRGDNVIIISP 72
>gi|435848032|ref|YP_007310282.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
gi|433674300|gb|AGB38492.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
Length = 75
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV E+DDE + +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSRAADR-EVDDE--DPVED 61
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 15 LIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR 74
L+ S+ + VKL+ ++E+RG L +YDQH+N++L D EE+ + E
Sbjct: 8 LLAESVGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGE-------------G 54
Query: 75 RTVPFLFVRGDGVILVSP 92
+ + + +RGD VIL+SP
Sbjct: 55 KKMGTIVIRGDNVILISP 72
>gi|326493364|dbj|BAJ85143.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 107
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ LS+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 EEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 72
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + + R + +F+RGD VI+V
Sbjct: 73 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 102
>gi|156083176|ref|XP_001609072.1| small nuclear ribonucleoprotein [Babesia bovis T2Bo]
gi|154796322|gb|EDO05504.1| small nuclear ribonucleoprotein, putative [Babesia bovis]
Length = 162
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+E++ PL ++ + + ++ + RS+R+L G++ A+D+H NMIL DV E+ T
Sbjct: 69 TTEDKDCPSGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWT-- 126
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
E+ ++ R + LF+RGD V++V
Sbjct: 127 EVSGGGGKKKYMNKDRYISRLFLRGDSVVVV 157
>gi|448306523|ref|ZP_21496427.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
gi|445597821|gb|ELY51893.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
Length = 75
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV T+ + DE V
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDV-----TIPVGDE-----VE 54
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ +RGD V+ ++P
Sbjct: 55 SESPAEDTTIIRGDNVVSITP 75
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL + VKL+ ++E+RG L +YDQH+N++L D EE+ + + +
Sbjct: 15 SLGNLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD-------------GGGKKMG 61
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VIL+SP
Sbjct: 62 TIVIRGDNVILISP 75
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
K PLD++ +L + V+L+ RE RG L+ YD H+N++L + EE+ E+
Sbjct: 3 KRPLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNIVLENAEEIQNG---------EV 53
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
VR V +RGD V+ VSP
Sbjct: 54 VRKLGSVV----IRGDTVVFVSP 72
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD++ +L+ + V+L+ RE RG+L YD H+N++L + EE+ E
Sbjct: 3 QRPLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLENAEELKENEE--------- 53
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
R + + VRGD V+ VSP
Sbjct: 54 ----SRKLGTIIVRGDTVVYVSP 72
>gi|448300402|ref|ZP_21490403.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
gi|445585834|gb|ELY40123.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
Length = 75
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV + E+D ET E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYDGDLAGYDQHMNLVLEDV-TIPLEGEVDAETPAE--D 61
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|242076520|ref|XP_002448196.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
gi|241939379|gb|EES12524.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
Length = 105
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 59/100 (59%), Gaps = 10/100 (10%)
Query: 1 MASEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
MA E ++ KE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +
Sbjct: 1 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 52 VEEVVTTVEIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
V E+ T V + ++ + + R + +F+RGD VI+V
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 100
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD++ +L+ + V+L+ RE RG+L YD H+N++L + EE+
Sbjct: 3 QRPLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKEN----------- 51
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
R + + VRGD V+ VSP
Sbjct: 52 --EASRKLGTIIVRGDTVVYVSP 72
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
L ++ S+ + V+LR+ + LRG L YDQH+N++L D +E++ DE
Sbjct: 7 LKILSKSVGSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELI------DE-------N 53
Query: 73 TRRTVPFLFVRGDGVILVSPP 93
T+ + + VRGD ++++SPP
Sbjct: 54 TQNKLGTIVVRGDSIVMISPP 74
>gi|307177333|gb|EFN66506.1| Probable small nuclear ribonucleoprotein Sm D2 [Camponotus
floridanus]
Length = 137
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + + ++
Sbjct: 45 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 104
Query: 70 VRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ R +P +F+RGD VILV PL TA
Sbjct: 105 KPVNKDRFIPKMFLRGDSVILVLRNPLATA 134
>gi|403221170|dbj|BAM39303.1| uncharacterized protein TOT_010000762 [Theileria orientalis
strain Shintoku]
Length = 90
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M++ E SAV PL LI L +I++ +++D+E+ G L +D ++NM+L DV + T
Sbjct: 1 MSTIEASAVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYTYTA- 59
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E VRTT +P V G+ + ++ P
Sbjct: 60 -------EGVRTTE--LPDALVNGNYIAMLVP 82
>gi|307194529|gb|EFN76821.1| Probable small nuclear ribonucleoprotein Sm D2 [Harpegnathos
saltator]
gi|322786953|gb|EFZ13177.1| hypothetical protein SINV_00701 [Solenopsis invicta]
Length = 110
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + + ++
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 77
Query: 70 VRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ R +P +F+RGD VILV PL TA
Sbjct: 78 KPVNKDRFIPKMFLRGDSVILVLRNPLATA 107
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
+PLD++ SL + V++R RE RG L YD H+N++L D E E+D +
Sbjct: 9 KPLDVLNKSLRSPVIVRIRGAREFRGTLEGYDLHMNLVLSDAE------ELDGDA----- 57
Query: 71 RTTRRTVPFLFVRGDGVILVSPPLR 95
+ + + VRGD V+ +SP ++
Sbjct: 58 -IVKELMGEILVRGDNVVYISPTVK 81
>gi|212722184|ref|NP_001131740.1| uncharacterized protein LOC100193106 [Zea mays]
gi|194692396|gb|ACF80282.1| unknown [Zea mays]
gi|195629728|gb|ACG36505.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|413918934|gb|AFW58866.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413918935|gb|AFW58867.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
Length = 105
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 59/100 (59%), Gaps = 10/100 (10%)
Query: 1 MASEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
MA E ++ KE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +
Sbjct: 1 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 52 VEEVVTTVEIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
V E+ T + + ++ + + R + +F+RGD VI+V
Sbjct: 61 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 100
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+++ + +KL+ ++ +RG L +DQH+N++L EE+++ + ++
Sbjct: 13 SINKTVLIKLKGNKTIRGNLLGFDQHMNLLLDQAEEILSDGD-------------SNSLG 59
Query: 79 FLFVRGDGVILVSPP 93
L VRGD V+++SPP
Sbjct: 60 SLVVRGDNVVMISPP 74
>gi|414586344|tpg|DAA36915.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 102
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 8 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 67
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + + R + +F+RGD VI+V
Sbjct: 68 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 97
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M ++ PLD++ SL+ ++ ++L+ RE RG L ++D H+N++L + EE+
Sbjct: 1 MTVQKNLNTSRPLDVLGKSLNSQVLIELKGGREFRGLLKSFDMHMNLVLNEAEEL----- 55
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ + T +R + + +RGD ++ +SP
Sbjct: 56 -------DGLETAKR-LGIVLIRGDNIVYISP 79
>gi|448321855|ref|ZP_21511330.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
gi|445602907|gb|ELY56878.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
Length = 75
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV E+DDE E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSR-AGDREVDDEAPVE--D 61
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD++ +L+ + V+L+ RE RG+L YD H+N++L + EE+ E
Sbjct: 3 QRPLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEE--------- 53
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
+ + + VRGD V+ VSP
Sbjct: 54 ----SKKLGTIIVRGDTVVYVSP 72
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 13/76 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
+L + VKLR D +RGKL ++DQHLN++L + EE+ + D T R +
Sbjct: 12 NLGSIVLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEIKS----DGST---------RKLG 58
Query: 79 FLFVRGDGVILVSPPL 94
L +RGD V+L+SP +
Sbjct: 59 TLVIRGDNVVLISPTM 74
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL + + +KLR + +RGKL +YD HLN++L D EE E+ D ++ R +
Sbjct: 17 SLGQMVLIKLRGGKSVRGKLRSYDLHLNIVLDDAEE-----ELSDGSW--------RKLG 63
Query: 79 FLFVRGDGVILVSP 92
+ +RG+ V+++SP
Sbjct: 64 TVLIRGENVVVISP 77
>gi|297604251|ref|NP_001055168.2| Os05g0314100 [Oryza sativa Japonica Group]
gi|54291778|gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa Japonica
Group]
gi|215768148|dbj|BAH00377.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768714|dbj|BAH00943.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196532|gb|EEC78959.1| hypothetical protein OsI_19425 [Oryza sativa Indica Group]
gi|222631079|gb|EEE63211.1| hypothetical protein OsJ_18021 [Oryza sativa Japonica Group]
gi|255676234|dbj|BAF17082.2| Os05g0314100 [Oryza sativa Japonica Group]
Length = 105
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 11 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 70
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + + R + +F+RGD VI+V
Sbjct: 71 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 100
>gi|226506222|ref|NP_001147167.1| LOC100280773 [Zea mays]
gi|195607934|gb|ACG25797.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|195622778|gb|ACG33219.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|238013460|gb|ACR37765.1| unknown [Zea mays]
gi|413942324|gb|AFW74973.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413942325|gb|AFW74974.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
gi|413942326|gb|AFW74975.1| Small nuclear ribonucleoprotein Sm D2 isoform 3 [Zea mays]
Length = 104
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 1 MASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
+ EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T
Sbjct: 7 IKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 66
Query: 59 VEIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
V + ++ + + R + +F+RGD VI+V
Sbjct: 67 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L+ + V+L+ RE RGKL YD H+N++L + EE+ +IVR
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGKLQGYDVHMNLVLDEAEEL---------KEGDIVR 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD ++ VSP
Sbjct: 56 KLGSVV----IRGDNIVYVSP 72
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L + V+L+ RE RG L YD H+N++L D EE+ E+VR
Sbjct: 4 PLDVLNKALKTPVLVRLKGGREFRGTLDGYDIHMNLVLVDAEEI---------QNGEVVR 54
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 55 KLGSVV----IRGDTVVFVSP 71
>gi|396082353|gb|AFN83963.1| small nuclear ribonucleoprotein D2 [Encephalitozoon romaleae
SJ-2008]
Length = 128
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+EE +K PL L+ ++ + + V LR++R++ GK+ AYD+H N+++GD +E+
Sbjct: 13 KEEMEMKGPLSLVHRAMVKAMPVLVSLRNNRKVMGKVIAYDRHYNLLMGDAKEIGNMRGR 72
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+ + R + +F+RGD VILV+ + T
Sbjct: 73 NKGKKKRQGCDFSRRLGNVFIRGDTVILVAGGVDT 107
>gi|255573198|ref|XP_002527528.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus
communis]
gi|223533078|gb|EEF34837.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus
communis]
Length = 103
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 8 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 67
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + + R + +F+RGD VI+V
Sbjct: 68 KTGKGKKKAMPVNKDRFISKMFLRGDSVIIV 98
>gi|242086617|ref|XP_002439141.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
gi|190688742|gb|ACE86405.1| putative small nuclear ribonucleoprotein D2 [Sorghum bicolor]
gi|241944426|gb|EES17571.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
Length = 104
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 10 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 69
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + + R + +F+RGD VI+V
Sbjct: 70 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+ + VKL+ E+RG+L +YDQHLN++L D EE+ YE+ RT R +
Sbjct: 12 SIGSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEI----------YED-GRT--RKLG 58
Query: 79 FLFVRGDGVILVSPP 93
+ +RGD V+L+SP
Sbjct: 59 TIVIRGDTVLLISPA 73
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 78
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+++ + +KL+ ++ +RG L +DQH+N++L EE+ E D ++ IV
Sbjct: 13 SINQVVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEI--PAEGDSKSLGSIV-------- 62
Query: 79 FLFVRGDGVILVSPP 93
VRGD V+++SPP
Sbjct: 63 ---VRGDNVVMISPP 74
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL + + +KL+ + +RG LH +DQH+N++L D +VEI +E + T
Sbjct: 13 SLGKVVLIKLKGGKVIRGNLHGFDQHMNLLLED------SVEILEEGKSNDLGT------ 60
Query: 79 FLFVRGDGVILVSPP 93
+ VRGD V+++SPP
Sbjct: 61 -IVVRGDNVVIISPP 74
>gi|116780023|gb|ABK21523.1| unknown [Picea sitchensis]
Length = 108
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 13 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVP 72
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 73 KTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 103
>gi|330507312|ref|YP_004383740.1| LSM domain-containing protein [Methanosaeta concilii GP6]
gi|328928120|gb|AEB67922.1| LSM domain protein [Methanosaeta concilii GP6]
Length = 78
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD++ SL+ + VKL+ R RG+L YD H+N+++ EEV
Sbjct: 9 QRPLDILNESLNGPVIVKLKDGRVFRGELQGYDIHMNLVMDKTEEVAEG----------- 57
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
R + + VRGD V+ +SP
Sbjct: 58 --AVARNIGTVIVRGDNVVYISP 78
>gi|241690286|ref|XP_002411748.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|215504583|gb|EEC14077.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|442752791|gb|JAA68555.1| Putative small nuclear ribonucleoprotein d2 polypeptide [Ixodes
ricinus]
Length = 118
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + ++ +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKSKKNN 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 88 PVNKDRYISKMFLRGDSVILV 108
>gi|50787671|emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+EE+ + PL L+ ++ + +I V R++R+L + A+D+H+NM+L +V E+ T +
Sbjct: 20 QEETITEGPLSLLTKAVKTNCQILVNCRNNRKLLARCKAFDRHMNMVLENVCEMWTEMPK 79
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + R + LF+RGD VILV
Sbjct: 80 KQKGKKTKPVNKERFIHKLFLRGDSVILV 108
>gi|224068340|ref|XP_002302713.1| predicted protein [Populus trichocarpa]
gi|224128478|ref|XP_002320342.1| predicted protein [Populus trichocarpa]
gi|118481477|gb|ABK92681.1| unknown [Populus trichocarpa]
gi|222844439|gb|EEE81986.1| predicted protein [Populus trichocarpa]
gi|222861115|gb|EEE98657.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 72
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 73 KTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 103
>gi|427786227|gb|JAA58565.1| Putative small nuclear ribonucleoprotein d2 polypeptide
[Rhipicephalus pulchellus]
Length = 118
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + ++ +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKSKKNN 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 88 PVNKDRYISKMFLRGDSVILV 108
>gi|413918936|gb|AFW58868.1| hypothetical protein ZEAMMB73_850141 [Zea mays]
Length = 104
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 10 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 69
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + + R + +F+RGD VI+V
Sbjct: 70 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
>gi|242024699|ref|XP_002432764.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
gi|212518249|gb|EEB20026.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
Length = 110
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V+E+ T +
Sbjct: 10 EEEEFSTGPLSVLSQSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTELPR 69
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ ++ + R + +F+RGD VILV PL TA
Sbjct: 70 SGKGKKKAKSVNKDRFISKMFLRGDSVILVLRNPLATA 107
>gi|448329423|ref|ZP_21518722.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
gi|445613929|gb|ELY67615.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
Length = 75
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G+L YDQH+N++L E+V VE E +
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYIGELAGYDQHMNLVL---EDVTIPVEGGVEEETPVED 61
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L + V+L+ RE RG L+ YD H+N++L + EE+ E++R
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNLVLQNAEEI---------QGGEVIR 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KLGSVV----IRGDTVVFVSP 72
>gi|192910682|gb|ACF06449.1| small nuclear ribonucleoprotein-like protein [Elaeis guineensis]
Length = 105
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 10 KEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 69
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + + R + +F+RGD VI+V
Sbjct: 70 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 100
>gi|126460744|ref|YP_001057022.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250465|gb|ABO09556.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 80
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 14/74 (18%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+ +++ VKLR E+RG L A+DQH+N++L D EE+ ID Y+ R T+
Sbjct: 19 SIGKQVLVKLRDSHEIRGILKAFDQHVNLLLDDAEEI-----IDGNVYK------RGTI- 66
Query: 79 FLFVRGDGVILVSP 92
VRG+ V+ +SP
Sbjct: 67 --VVRGENVLFISP 78
>gi|357126948|ref|XP_003565149.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Brachypodium distachyon]
gi|357126950|ref|XP_003565150.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 2 [Brachypodium distachyon]
Length = 105
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ LS+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 11 EEEEFSTGPLSVLMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 70
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 71 TGKGKKKAHPVNKDRFISKMFLRGDSVIIV 100
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+D+ + +KL+ + +RG L +DQH+N++L EE+ E D ++ IV
Sbjct: 9 SIDQVVLIKLKGSKTIRGTLLGFDQHMNLLLDSSEEI--PAEGDSKSLGTIV-------- 58
Query: 79 FLFVRGDGVILVSPP 93
VRGD V+++SPP
Sbjct: 59 ---VRGDNVVMISPP 70
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L+ + VK++ +RE++G L +YDQHLN+IL E EE+ R +
Sbjct: 19 LNSSVLVKMKGNREVKGILTSYDQHLNLIL--------------EKAEELEGKVSRPLGL 64
Query: 80 LFVRGDGVILVSP 92
+ +RGD VI VSP
Sbjct: 65 VLLRGDNVIAVSP 77
>gi|284166187|ref|YP_003404466.1| Sm ribonucleoprotein-like protein [Haloterrigena turkmenica DSM
5511]
gi|448390930|ref|ZP_21566397.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM
13891]
gi|284015842|gb|ADB61793.1| Like-Sm ribonucleoprotein core [Haloterrigena turkmenica DSM
5511]
gi|445666518|gb|ELZ19179.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM
13891]
Length = 74
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV + +D+E E
Sbjct: 5 PLDVLEASLGERVTVRLKSGGEYVGDLAGYDQHMNLVLEDV--TIPEAGVDEEAPVE--D 60
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 61 TT-------IIRGDNVVSITP 74
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L+ + V+L+ RE RG+L YD H+N++L + EE+ EIVR
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGELQGYDVHMNLVLDNAEELKDG---------EIVR 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ +SP
Sbjct: 56 KLGSVV----IRGDNVVYLSP 72
>gi|14600779|ref|NP_147300.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
gi|10720267|sp|Q9YEQ5.1|RUXX_AERPE RecName: Full=Putative snRNP Sm-like protein
gi|5104175|dbj|BAA79491.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
Length = 77
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D + VKL+S ++G L YDQHLN+ILGD EEI T+ R +
Sbjct: 17 VDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDA--------------EEIGETSIRRLGL 62
Query: 80 LFVRGDGVILVSP 92
VRGD V++++P
Sbjct: 63 TLVRGDSVVVITP 75
>gi|359806642|ref|NP_001241022.1| uncharacterized protein LOC100793233 [Glycine max]
gi|255633912|gb|ACU17317.1| unknown [Glycine max]
Length = 108
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 72
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 73 KTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 103
>gi|449457536|ref|XP_004146504.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
gi|449499984|ref|XP_004160970.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
Length = 107
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 12 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 71
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 72 KTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 102
>gi|357627860|gb|EHJ77403.1| small nuclear ribonucleoprotein sm d2 [Danaus plexippus]
Length = 109
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + +
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKGK 77
Query: 70 VRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
+ + +F+RGD VILV PL TA
Sbjct: 78 AVNKDKFISKMFLRGDSVILVLRNPLATA 106
>gi|134948671|ref|NP_001077096.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
gi|117606770|gb|ABK42005.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
Length = 119
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKGK 87
Query: 70 VRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
+ + +F+RGD VILV PL TA
Sbjct: 88 AVNKDKFISKMFLRGDSVILVLRNPLATA 116
>gi|346468901|gb|AEO34295.1| hypothetical protein [Amblyomma maculatum]
gi|346468903|gb|AEO34296.1| hypothetical protein [Amblyomma maculatum]
gi|346468905|gb|AEO34297.1| hypothetical protein [Amblyomma maculatum]
Length = 118
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + ++ +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKSKKNN 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 88 PVNKDRYISKMFLRGDSVILV 108
>gi|448313624|ref|ZP_21503337.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
gi|445597557|gb|ELY51631.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
Length = 75
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 14/83 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE--IDDETYEEI 69
PLD++ SL ER+ V+L+S E G L YDQH+N++L E+V VE ++DE E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVL---EDVTIPVEGGVEDEAPAE- 60
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 61 -DTT-------IIRGDNVVSITP 75
>gi|433590264|ref|YP_007279760.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|448332329|ref|ZP_21521573.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|448383664|ref|ZP_21562844.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
gi|433305044|gb|AGB30856.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|445627433|gb|ELY80757.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|445659266|gb|ELZ12073.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
Length = 74
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE-IDDETYEEIV 70
PLD++ SL ER+ V+L+S E G L YDQH+N++L E+V VE +D E E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLSGYDQHMNLVL---EDVTIPVEGVDQEAPAE-- 59
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 60 DTT-------IIRGDNVVSITP 74
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL + VKL+ ++ +RG L +YD H+N++L + EE++ D T R V
Sbjct: 18 SLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMN----DGST---------RKVG 64
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VILVSP
Sbjct: 65 TIVIRGDNVILVSP 78
>gi|209879413|ref|XP_002141147.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556753|gb|EEA06798.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE-TYEEIV 70
PL LI + RIY+ LR DRE+ G L +D+++NM+L +VEE T+ +++ + +++
Sbjct: 22 PLALIDKCIGSRIYIILRGDREISGTLRGFDEYVNMVLDEVEEYGYTIVMNESASNKKLK 81
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
R + + + G+ + L+ P
Sbjct: 82 RVLVNRLDTILLSGNNIALLIP 103
>gi|225424416|ref|XP_002285043.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 107
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 12 NEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 71
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 72 KTGKGKKKANPVNKDRFISKMFLRGDSVIIV 102
>gi|357521397|ref|XP_003630987.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525009|gb|AET05463.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|388506390|gb|AFK41261.1| unknown [Medicago truncatula]
Length = 108
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 72
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 73 KTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 103
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT--TV 59
E+E K PL ++ ++ + ++++ R++R+L ++ A+D+H NMIL DV E T T
Sbjct: 19 EKEEFEKGPLSVLTKAVRSNAQVFINCRNNRKLLARVKAFDRHFNMILEDVREFWTEGTR 78
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+T + V R + LF+RGD VI++ P
Sbjct: 79 AGKGKTKSKPVNKD-RFISKLFLRGDSVIIILP 110
>gi|374629344|ref|ZP_09701729.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907457|gb|EHQ35561.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 75
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 15/84 (17%)
Query: 10 KEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
K PL+++ +L+++ + V L+ RE+RG L YD H+N++L + EE + V T
Sbjct: 3 KRPLEILDKALNQKPVIVSLKGGREIRGVLQGYDVHMNLVLENAEEEINGVTTKAGT--- 59
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
L VRGD VI +SP
Sbjct: 60 -----------LIVRGDNVIYISP 72
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 13/75 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+++ + +KL+ + +RG L +DQH+N++L EE+ T +++
Sbjct: 13 SINQIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPT-------------EGNSKSLG 59
Query: 79 FLFVRGDGVILVSPP 93
+ VRGD V+++SPP
Sbjct: 60 TIVVRGDNVVMISPP 74
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL + VKL+ ++ +RG L +YD H+N++L + EE++ D T R V
Sbjct: 12 SLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMN----DGST---------RKVG 58
Query: 79 FLFVRGDGVILVSP 92
+ +RGD VILVSP
Sbjct: 59 TIVIRGDNVILVSP 72
>gi|356513032|ref|XP_003525218.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Glycine max]
Length = 108
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 72
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 73 KTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 103
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+++ + +KL+ + +RG L +DQH+N++L EE+ VE + ++ IV
Sbjct: 13 SINQIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEI--PVEGNSKSLGTIV-------- 62
Query: 79 FLFVRGDGVILVSPPLRT 96
VRGD V+++SPP T
Sbjct: 63 ---VRGDNVVMISPPPAT 77
>gi|337284247|ref|YP_004623721.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
gi|334900181|gb|AEH24449.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
Length = 82
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L D E + E+V+
Sbjct: 13 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADAEMIQDG---------EVVK 63
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 64 KYGKIV----IRGDNVLAISP 80
>gi|336253861|ref|YP_004596968.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
gi|335337850|gb|AEH37089.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
Length = 75
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 12/82 (14%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE-EVVTTVEIDDETYEEIV 70
PLD++ SL ER+ V+L+S E G+L YDQH+N++L D V TVE EE V
Sbjct: 5 PLDILEASLGERVTVRLKSGDEYVGELTGYDQHMNLVLEDATIPVGGTVE-----EEEPV 59
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
T +RGD V+ ++P
Sbjct: 60 EDTT------IIRGDNVVSITP 75
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L+ + V+L+ RE RG L YD H+N++L + EE+ EIVR
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDG---------EIVR 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KIGGVV----IRGDNVVYVSP 72
>gi|307354786|ref|YP_003895837.1| small nuclear riboprotein-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307158019|gb|ADN37399.1| Like-Sm ribonucleoprotein core [Methanoplanus petrolearius DSM
11571]
Length = 75
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 15/84 (17%)
Query: 10 KEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
K PL+++ +L+++ + V L+ RE+RG L YD H+N++L + EE + V + T
Sbjct: 3 KRPLEILDQALNQKPVIVSLKGGREIRGILQGYDVHMNLVLENAEEEINGVIKNQGT--- 59
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
L VRGD VI +SP
Sbjct: 60 -----------LIVRGDNVIYISP 72
>gi|452825642|gb|EME32637.1| small nuclear ribonucleoprotein D2 [Galdieria sulphuraria]
Length = 119
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVR 83
+ + +R+ ++L GK+ A+D+H NMIL +V+E+ T EI V R +P +F+R
Sbjct: 51 VLINVRNSKKLLGKVKAFDRHFNMILENVKEIWT--EIPKSKKARPVNKD-RFIPKMFLR 107
Query: 84 GDGVILV 90
GD V+LV
Sbjct: 108 GDSVVLV 114
>gi|357521399|ref|XP_003630988.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
gi|355525010|gb|AET05464.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
Length = 104
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 9 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 68
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 69 KTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 99
>gi|352683089|ref|YP_004893613.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
gi|350275888|emb|CCC82535.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
Length = 79
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 14/74 (18%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+ +R+ VKLR E+RG L ++DQH+N++L D EEVV D+ ++ R T
Sbjct: 19 SIGKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVV-----DNNIFK---RGT----- 65
Query: 79 FLFVRGDGVILVSP 92
+ VRG+ V+ VSP
Sbjct: 66 -MVVRGENVLFVSP 78
>gi|126697412|gb|ABO26663.1| small nuclear ribonucleoprotein D2-like protein [Haliotis discus
discus]
Length = 119
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E EPL ++ S+ + ++ + R++++L ++ A+D+H NM+L +V+E+ T V
Sbjct: 19 AREQEEFNTEPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEV 78
Query: 60 EIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VILV
Sbjct: 79 PKTGKGKKKSKPVNKDRYISKMFLRGDSVILV 110
>gi|297737605|emb|CBI26806.3| unnamed protein product [Vitis vinifera]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 8 NEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 67
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 68 KTGKGKKKANPVNKDRFISKMFLRGDSVIIV 98
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 15/84 (17%)
Query: 10 KEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
K P+D++ L+ + + + L+ RE++G L YD H+N++L + EE
Sbjct: 8 KRPMDILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVL--------------DKAEE 53
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
IV+ +++ L +RGD VI +SP
Sbjct: 54 IVQGQAQSIGTLIIRGDNVIYISP 77
>gi|327311460|ref|YP_004338357.1| Small nuclear ribonucleoprotein (snRNP) --like protein
[Thermoproteus uzoniensis 768-20]
gi|326947939|gb|AEA13045.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Thermoproteus uzoniensis 768-20]
Length = 75
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 14/74 (18%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+ +R+ VKLR E+RG L ++DQH+N++L D EEV+ V + T
Sbjct: 15 SIGKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVIDNVILKRGT------------- 61
Query: 79 FLFVRGDGVILVSP 92
+ VRG+ V+ VSP
Sbjct: 62 -MVVRGENVLFVSP 74
>gi|145343983|ref|XP_001416522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576747|gb|ABO94815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE V PL ++ S+ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T V
Sbjct: 9 EENEFVTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPK 68
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ + + R + +F+RGD VILV
Sbjct: 69 TGKGAAKAKPVNKDRFISKMFLRGDSVILV 98
>gi|448284412|ref|ZP_21475672.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
gi|445570747|gb|ELY25306.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
Length = 84
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G+L YDQH+N++L EV ++ +E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVL----EVAADGADGADSDDEAET 60
Query: 72 TTRRTVPF---LFVRGDGVILVSP 92
++ P +RGD V+ ++P
Sbjct: 61 ESQAAEPVEDTTIIRGDNVVSITP 84
>gi|57640911|ref|YP_183389.1| small nuclear ribonucleoprotein [Thermococcus kodakarensis KOD1]
gi|73919284|sp|Q5JIE0.1|RUXX_PYRKO RecName: Full=Putative snRNP Sm-like protein
gi|57159235|dbj|BAD85165.1| snRNP component, Sm-like protein [Thermococcus kodakarensis KOD1]
Length = 76
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L D E + E+V+
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLALSP 72
>gi|21226441|ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
gi|452208952|ref|YP_007489066.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
gi|30173324|sp|Q8PZZ9.1|RUXX_METMA RecName: Full=Putative snRNP Sm-like protein
gi|20904702|gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
gi|452098854|gb|AGF95794.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
Length = 72
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +LD + V+L+ RE RG+L YD H+N++L + EE+ E+V
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREG---------EVVS 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KFSSVV----IRGDNVVYVSP 72
>gi|391344476|ref|XP_003746524.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Metaseiulus occidentalis]
Length = 116
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPRTAKGRKGQ 86
Query: 70 VRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R +P +F+RGD VI+V PL+ A
Sbjct: 87 PVNKDRFIPKMFLRGDSVIIVLRNPLQAA 115
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
+L +++ +K + + LRGKL ++DQHLN++L D EE+++ + R +
Sbjct: 12 NLGKQVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN-------------GSTRKLG 58
Query: 79 FLFVRGDGVILVSP 92
+ +RGD V+L+SP
Sbjct: 59 TVVIRGDTVVLISP 72
>gi|294882885|ref|XP_002769869.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
gi|239873682|gb|EER02587.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
Length = 110
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L+ + +E ++ + R++R++ G++ A+D+H NM+L +V E+ T V + +
Sbjct: 24 PLSLLTKACEENSQVLINCRNNRKILGRVKAFDRHFNMVLENVRELWTEVPKGGSNKKPV 83
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ R V +F+RGD VI+V
Sbjct: 84 NKD--RFVSKMFLRGDSVIMV 102
>gi|367041894|ref|XP_003651327.1| hypothetical protein THITE_2111451 [Thielavia terrestris NRRL 8126]
gi|346998589|gb|AEO64991.1| hypothetical protein THITE_2111451 [Thielavia terrestris NRRL 8126]
Length = 155
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A +E KE + ++ +D+RI VK RE G L YD +N++L DVEEV+
Sbjct: 57 AGSKERPKKENILDLKKYMDQRITVKFNGGREATGVLKGYDALMNLVLDDVEEVLR---- 112
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DDE TT R + + VRG +++VSP
Sbjct: 113 DDEG-----NTTTRPLGLVVVRGTLLVVVSP 138
>gi|154149642|ref|YP_001403260.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153998194|gb|ABS54617.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 76
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 15/88 (17%)
Query: 10 KEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
K PLD++ L L+ + + V L+ RE+RG L YD H+N++L EE +
Sbjct: 3 KRPLDILDLVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEETENG---------Q 53
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPLRT 96
+V+ V L VRGD VI +SP L +
Sbjct: 54 VVK-----VGTLIVRGDNVIYISPSLES 76
>gi|20092011|ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
gi|30173335|sp|Q8TL47.1|RUXX_METAC RecName: Full=Putative snRNP Sm-like protein
gi|19917220|gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 72
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +LD + V+L+ RE RG+L YD H+N++L + EE+ E+V
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDG---------EVVS 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KFSSVV----IRGDNVVYVSP 72
>gi|351727138|ref|NP_001238430.1| uncharacterized protein LOC100500203 [Glycine max]
gi|255629692|gb|ACU15195.1| unknown [Glycine max]
Length = 117
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 72
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 73 KTGKGKKKSQPVNKDRFISKMFLRGDSVIIV 103
>gi|453086972|gb|EMF15013.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 121
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L++ ++ + ++ + R++R+L G++ A+D+H NM+L +V+E+ + + +
Sbjct: 38 PLSLLQTAVRQHTQVLISCRNNRKLLGRVKAFDRHCNMVLENVKEMWSETPRTSDGKKGR 97
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD VILV
Sbjct: 98 VVNKDRFISKMFLRGDSVILV 118
>gi|118388573|ref|XP_001027383.1| Sm protein [Tetrahymena thermophila]
gi|89309153|gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 5 EESAVKEPLDLI--RLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
EE+ + P L+ + + ++ + LR++R++ K+ A+D+H+NM+L +V E+ T V
Sbjct: 10 EETFSQGPFSLLFKAVKANTQVLIALRNNRKMLAKVRAFDRHMNMVLENVLEMWTEVPRG 69
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ R + LF+RGD VI V
Sbjct: 70 SHGKKSKPMKKERYITKLFLRGDSVIFV 97
>gi|237832903|ref|XP_002365749.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma
gondii ME49]
gi|401408795|ref|XP_003883846.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
gi|211963413|gb|EEA98608.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma
gondii ME49]
gi|221488207|gb|EEE26421.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma
gondii GT1]
gi|221508720|gb|EEE34289.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma
gondii VEG]
gi|325118263|emb|CBZ53814.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
Length = 104
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++R++ G++ A+D+H N++L DV E+ T E ++
Sbjct: 19 PLSVLAASVKDNSQVLINCRNNRKVLGRVKAFDRHCNLVLTDVREMWT--ETSKGGGKKK 76
Query: 70 VRTTR--RTVPFLFVRGDGVILV 90
VRT R + LF+RGD VIL+
Sbjct: 77 VRTVNKDRFISKLFLRGDAVILI 99
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 78
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+++ + +KL+ ++ +RG L +DQH+N++L EE+ E D + IV
Sbjct: 13 SINQVVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEI--PAEGDSKGLGTIV-------- 62
Query: 79 FLFVRGDGVILVSPP 93
VRGD V+++SPP
Sbjct: 63 ---VRGDNVVMISPP 74
>gi|14591301|ref|NP_143379.1| small nuclear ribonucleoprotein [Pyrococcus horikoshii OT3]
gi|6094216|sp|O74016.1|RUXX_PYRHO RecName: Full=Putative snRNP Sm-like protein
gi|3257945|dbj|BAA30628.1| 75aa long hypothetical small nucleoprotein [Pyrococcus horikoshii
OT3]
Length = 75
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E V E+V+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLAISP 72
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
+L + + +K + + LRGKL ++DQHLN++L D EE+++ + R +
Sbjct: 12 NLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN-------------GSTRKLG 58
Query: 79 FLFVRGDGVILVSP 92
+ +RGD V+L+SP
Sbjct: 59 TIVIRGDTVVLISP 72
>gi|260942737|ref|XP_002615667.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
gi|238850957|gb|EEQ40421.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
Length = 112
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ +I+ S++ + V R++ ++ GK+ A+D+H N+IL DV+E+ T E + +
Sbjct: 29 PMSVIQSSMNNNTPVVVHCRNNHKVIGKVKAFDRHCNLILEDVKELWT--ETTRNSKGAV 86
Query: 70 VRTTR--RTVPFLFVRGDGVILV 90
++T R + LF+RGD VI+V
Sbjct: 87 IKTASKERFISKLFLRGDSVIIV 109
>gi|357495275|ref|XP_003617926.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519261|gb|AET00885.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 159
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 1 MASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
M EEE + PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T
Sbjct: 63 MNQEEEFNIG-PLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTE 121
Query: 59 VEIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
V + ++ + R + +F+RGD VI+V
Sbjct: 122 VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 154
>gi|67470740|ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
gi|167383658|ref|XP_001736617.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|167391078|ref|XP_001739631.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|56468055|gb|EAL45945.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
gi|165896637|gb|EDR23988.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|165900902|gb|EDR27123.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|407040095|gb|EKE39972.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449709579|gb|EMD48820.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba
histolytica KU27]
Length = 101
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 1 MASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
M E ++ V+ P L+ ++++ ++ + R++++L ++ A+D+H NM+L +++E+ T
Sbjct: 1 MEEETKALVEGPFQLLTEAVEKHGQVLINCRNNKKLICRVKAFDRHFNMVLENIKEIWTE 60
Query: 59 VEIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ D + + + +R++ +F+RGD VI++
Sbjct: 61 MKRDSDGKLK-AKLCQRSISKMFLRGDSVIVI 91
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 72
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +LD + V+L+ RE RG+L YD H+N++L + EE+ E+V
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREG---------EVVS 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KFGSVV----IRGDNVVYVSP 72
>gi|303274376|ref|XP_003056509.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla
CCMP1545]
gi|226462593|gb|EEH59885.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla
CCMP1545]
Length = 103
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 9/85 (10%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V+E V +T + +
Sbjct: 17 PLSVLTQSVKTNSQVLINCRNNRKLLGQIKAFDRHCNMVLENVKEYWLEV---SKTGKGV 73
Query: 70 VRTT----RRTVPFLFVRGDGVILV 90
RTT R + +F+RGD VILV
Sbjct: 74 KRTTPIHKERFISKMFLRGDSVILV 98
>gi|448317324|ref|ZP_21506880.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
gi|445603844|gb|ELY57797.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
Length = 75
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV D + E+
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVSRAADREVEDSDPVEDTT- 63
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+RGD V+ ++P
Sbjct: 64 ---------IIRGDNVVSITP 75
>gi|389852826|ref|YP_006355060.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
gi|388250132|gb|AFK22985.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
Length = 76
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E + E+V+
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLAISP 72
>gi|320583711|gb|EFW97924.1| Core Sm protein Sm D2 [Ogataea parapolymorpha DL-1]
Length = 110
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVR 83
+ + LR++ +L K+ A+D+H NMIL +V+E+ T DD ++++R R V +F+R
Sbjct: 43 VLISLRNNHKLLAKVKAFDRHCNMILENVKEIWTETNPDDRN-KKMMR--ERFVSKMFLR 99
Query: 84 GDGVILV 90
GD VI+V
Sbjct: 100 GDSVIVV 106
>gi|171685514|ref|XP_001907698.1| hypothetical protein [Podospora anserina S mat+]
gi|170942718|emb|CAP68371.1| unnamed protein product [Podospora anserina S mat+]
Length = 116
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L++ ++ ++ + +RS+R+L ++ A+D+H NMIL +V+E+ T + +
Sbjct: 34 PLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHNGKKGRP 93
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD VILV
Sbjct: 94 VNKD-RFISKMFLRGDSVILV 113
>gi|397773764|ref|YP_006541310.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
gi|397682857|gb|AFO57234.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
Length = 135
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL +R+ V+L+S E G L YDQH+N++L E+V+ VE + E
Sbjct: 65 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVL---EDVMIPVEGNVEEEPPAED 121
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 122 TT-------IIRGDNVVSITP 135
>gi|308161048|gb|EFO63510.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
P15]
Length = 132
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
E + PL L++ SL++RI V L+++ + G L ++D+H+N+IL + EE ++
Sbjct: 52 EYTEFSNPLYLLKTSLEDRISVLLQNNSSITGLLASFDEHMNLILINAEETGHSL----- 106
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVS 91
R P L +RGD +I V+
Sbjct: 107 ---------NRFFPLLVIRGDSIIFVT 124
>gi|209877963|ref|XP_002140423.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556029|gb|EEA06074.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 111
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 12 PLDLIR--LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L+ + + +I V R++R++ G++ A+D+H N++L DV E+ T + + ++
Sbjct: 22 PLSLLSECVRTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDVREIWTEA-VKTNSSQKK 80
Query: 70 VRTTR-----RTVPFLFVRGDGVILV 90
+ R R + LFVRGD VIL+
Sbjct: 81 KSSNRFINKDRFISKLFVRGDSVILI 106
>gi|168017146|ref|XP_001761109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687795|gb|EDQ74176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 4 TEEEEFSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 63
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 64 KAGKGKKKAKPVNKDRFISKMFLRGDSVIIV 94
>gi|332157748|ref|YP_004423027.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
gi|331033211|gb|AEC51023.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
Length = 75
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E + E+V+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLAISP 72
>gi|324546471|gb|ADY49713.1| Small nuclear ribonucleoprotein Sm D2, partial [Ascaris suum]
Length = 120
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 8/100 (8%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V+E+ T +
Sbjct: 18 AKEQEEFNVGPLSILTQSVKNNAQVMINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTEL 77
Query: 60 EIDDETYEEIVRTTR-RTVPFLFVRGDGVILV-----SPP 93
+ ++ + R + +F+RGD VILV +PP
Sbjct: 78 PKTGKGKKKAKPVAKDRFISKMFLRGDSVILVLKNPLTPP 117
>gi|448341319|ref|ZP_21530281.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
gi|445628366|gb|ELY81674.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
Length = 75
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL +R+ V+L+S E G L YDQH+N++L E+V+ VE + E
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVL---EDVMIPVEGNVEEEPPAED 61
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|289580746|ref|YP_003479212.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
gi|289530299|gb|ADD04650.1| Like-Sm ribonucleoprotein core [Natrialba magadii ATCC 43099]
Length = 287
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL ER+ V+L+S E G+L YDQH+N++L EV ++ +E
Sbjct: 208 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVL----EVAADGADGADSDDEAET 263
Query: 72 TTRRTVPF---LFVRGDGVILVSP 92
++ P +RGD V+ ++P
Sbjct: 264 ESQAAEPVEDTTIIRGDNVVSITP 287
>gi|388501344|gb|AFK38738.1| unknown [Medicago truncatula]
Length = 97
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 1 MASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
M EEE + PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T
Sbjct: 1 MNQEEEFNI-GPLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTE 59
Query: 59 VEIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
V + ++ + R + +F+RGD VI+V
Sbjct: 60 VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 92
>gi|171184523|ref|YP_001793442.1| like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
gi|170933735|gb|ACB38996.1| Like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
Length = 80
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 14/92 (15%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MAS+ ++ S+ +++ VKLR E+RG L ++DQH+N++L D EE+
Sbjct: 1 MASDISKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEI----- 55
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
ID Y+ R T+ VRG+ V+ +SP
Sbjct: 56 IDGNVYK------RGTI---VVRGENVLFISP 78
>gi|126137433|ref|XP_001385240.1| hypothetical protein PICST_60825 [Scheffersomyces stipitis CBS
6054]
gi|126092462|gb|ABN67211.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 112
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI+ +++ I + R++ +L GK+ A+D+H N+IL +V+E+ T +++
Sbjct: 29 PMSLIQNAVNNNTPIVISCRNNHKLIGKVRAFDRHCNLILENVKELWTETSKNNKGKATK 88
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ R + LF+RGD ++++
Sbjct: 89 SISRERFISKLFLRGDSIVII 109
>gi|48477742|ref|YP_023448.1| small nuclear ribonucleoprotein [Picrophilus torridus DSM 9790]
gi|48430390|gb|AAT43255.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 82
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+ + + V +P+D+++ SL++ I V ++ +R G L YD ++N++L +V E +
Sbjct: 2 ANKTAYVSKPMDVLKNSLEKNIMVDVKGNRTYSGTLEGYDIYMNVVLSNVSETING---- 57
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ + VRGD +I VSP
Sbjct: 58 ---------ENKGVFEKMLVRGDNIIFVSP 78
>gi|383621641|ref|ZP_09948047.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|448702271|ref|ZP_21699925.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|445777641|gb|EMA28602.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
Length = 76
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 15/84 (17%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY---EE 68
PLD++ SL ER+ V+L+S E G+L YDQH+N++L EEV T+ D+ E
Sbjct: 5 PLDVLEASLGERVAVRLKSGDEYVGELAGYDQHMNLVL---EEV--TIPADESISGDGEP 59
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
I TT +RGD V+ ++P
Sbjct: 60 IEDTT-------IIRGDNVVSITP 76
>gi|448399368|ref|ZP_21570665.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
gi|445668989|gb|ELZ21605.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
Length = 75
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL +R+ V+L+S E G+L YDQH+N++L E+V VE E +
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEHVGELAGYDQHMNLVL---EDVTIPVEGSVEEDAPVED 61
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|328792204|ref|XP_003251694.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis mellifera]
Length = 122
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + + ++
Sbjct: 30 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 89
Query: 70 VRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ R + +F+RGD VILV PL TA
Sbjct: 90 KPVNKDRFISKMFLRGDSVILVLRNPLATA 119
>gi|449329925|gb|AGE96193.1| small nuclear ribonucleoprotein d2 [Encephalitozoon cuniculi]
Length = 135
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+E +K PL L+R ++ + + V LRS+R++ G++ AYD+H N+++ D +E+ TT
Sbjct: 13 KETMEMKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGK 72
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVS 91
+ + R + +F+RGD VILV+
Sbjct: 73 NKGRKKRQGCEFSRKLGKVFIRGDTVILVA 102
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+ V+ PLD + +++ + +KL+ +RE RG L ++D H+N++L D EE+ E
Sbjct: 4 QQNVQRPLDALGKAVNSPVLIKLKGEREFRGILKSFDLHMNLVLDDAEEL--------EK 55
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
E + R + + +RGD ++ +SP
Sbjct: 56 GEVL-----RRLGTVLIRGDNIVYISP 77
>gi|448338508|ref|ZP_21527554.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|448345677|ref|ZP_21534566.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
gi|445622626|gb|ELY76076.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|445633610|gb|ELY86797.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
Length = 75
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL +R+ V+L+S E G L YDQH+N++L E+V VE + E
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVL---EDVTIPVEGNVEEEPPAED 61
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|448377944|ref|ZP_21560567.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
gi|445654917|gb|ELZ07766.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 13/85 (15%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT----VEIDDETYE 67
PLD++ +L +R+ V L++ E G+L YDQH+N++L + E T+ + D+ET
Sbjct: 24 PLDVLEAALGDRVRVNLKTGTEYVGELAGYDQHMNLVLEEAERTATSETAPADGDEETSS 83
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
+ TT +RGD V+ ++P
Sbjct: 84 Q--DTT-------IIRGDNVVSINP 99
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
Length = 76
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVR 83
+ +K++ + +RGKL +YDQHLN++L D EEV + R + L +R
Sbjct: 18 VLIKMKGEVSIRGKLRSYDQHLNIVLDDAEEVRGD-------------GSSRKLGTLVIR 64
Query: 84 GDGVILVSP 92
GD V+L+SP
Sbjct: 65 GDTVVLISP 73
>gi|159118879|ref|XP_001709658.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
gi|157437775|gb|EDO81984.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
Length = 126
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
E + PL L++ SL++R+ V L+++ + G L ++D+H+N+IL + EE ++
Sbjct: 46 EYTEFSNPLYLLKTSLEDRVSVLLQNNSSITGLLASFDEHMNLILINAEETGHSLN---- 101
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVS 91
R P L +RGD +I V+
Sbjct: 102 ----------RFFPLLVIRGDSIIFVT 118
>gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277787|pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277788|pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277789|pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277790|pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277791|pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277792|pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|29726402|pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726403|pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726404|pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726405|pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726406|pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726407|pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726408|pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 14/92 (15%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MAS+ ++ S+ +++ VKLR E+RG L ++DQH+N++L D EE+
Sbjct: 1 MASDISKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI----- 55
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
ID Y+ R T + VRG+ V+ +SP
Sbjct: 56 IDGNVYK---RGT------MVVRGENVLFISP 78
>gi|255070809|ref|XP_002507486.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
gi|226522761|gb|ACO68744.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
Length = 101
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ ++ + R++R+L G++ A+D+H NM+L +V+E+ T + + ++
Sbjct: 15 PLSVLSHSVKTSAQVLISCRNNRKLLGRVKAFDRHCNMVLENVKELWTEIPKTGKGCKKA 74
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
++ R + +F+RGD VILV
Sbjct: 75 RTISKDRFLSKMFIRGDSVILV 96
>gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159615|gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 14/74 (18%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+ +++ VKLR E+RG L ++DQH+N++L D EE+ ID Y+ R T
Sbjct: 19 SIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-----IDGNVYK---RGT----- 65
Query: 79 FLFVRGDGVILVSP 92
+ VRG+ V+ +SP
Sbjct: 66 -MVVRGENVLFISP 78
>gi|156544546|ref|XP_001607849.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Nasonia vitripennis]
Length = 120
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 87
Query: 70 VRTTR-RTVPFLFVRGDGVIL-VSPPLRTA 97
+ R + +F+RGD VIL V PL TA
Sbjct: 88 KPVNKDRFISKMFLRGDSVILVVRNPLATA 117
>gi|302921652|ref|XP_003053324.1| hypothetical protein NECHADRAFT_59475 [Nectria haematococca mpVI
77-13-4]
gi|256734264|gb|EEU47611.1| hypothetical protein NECHADRAFT_59475 [Nectria haematococca mpVI
77-13-4]
Length = 133
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D++I VK RE++G L YD +N++L DV EVV DDE E
Sbjct: 47 LDLAKY-MDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVR----DDEGNE----- 96
Query: 73 TRRTVPFLFVRGDGVILVSP 92
+ R++ + VRG ++LVSP
Sbjct: 97 STRSLGLVVVRGTLLVLVSP 116
>gi|66500455|ref|XP_397475.2| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Apis mellifera]
gi|340709815|ref|XP_003393496.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus terrestris]
gi|350410361|ref|XP_003489020.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus impatiens]
gi|383861912|ref|XP_003706428.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Megachile rotundata]
Length = 120
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ R + +F+RGD VILV PL TA
Sbjct: 88 KPVNKDRFISKMFLRGDSVILVLRNPLATA 117
>gi|19074769|ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
gi|19069411|emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
Length = 135
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+E +K PL L+R ++ + + V LRS+R++ G++ AYD+H N+++ D +E+ TT
Sbjct: 13 KETMEMKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGK 72
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVS 91
+ + R + +F+RGD VILV+
Sbjct: 73 NKGRKKRQGCEFSRKLGKVFIRGDTVILVA 102
>gi|403222339|dbj|BAM40471.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 105
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ + E ++ + R++R++ ++ A+D+H NMIL DV E+ T + + ++
Sbjct: 23 PLSILEECVRENCQVLINCRNNRKILARVKAFDRHFNMILTDVREMWT---VKSKGNKKK 79
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ T R + LF+RGD VI+V
Sbjct: 80 METKDRFITRLFLRGDSVIVV 100
>gi|84998502|ref|XP_953972.1| (U6) snRNA-associated Sm-like protein [Theileria annulata]
gi|65304970|emb|CAI73295.1| (U6) snRNA-associated Sm-like protein, putative [Theileria
annulata]
Length = 90
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV------EE 54
M++ E SAV PL LI L +I++ +++D+E+ G L +D ++NM+L DV +
Sbjct: 1 MSTIEASAVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSAD 60
Query: 55 VVTTVEIDD 63
V T E++D
Sbjct: 61 GVKTTELND 69
>gi|168057690|ref|XP_001780846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667702|gb|EDQ54325.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 4 TEEEEFSTGPLSVLAMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 63
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RG+ VI+V
Sbjct: 64 KTGKGKKKAKPVNKDRFISKMFLRGESVIIV 94
>gi|409095290|ref|ZP_11215314.1| small nuclear ribonucleoprotein [Thermococcus zilligii AN1]
Length = 76
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD + V L+ E RGKL YD HLN++L D + + E+V+
Sbjct: 5 PLDIIHRSLDRDVLVLLKKGGEFRGKLIGYDIHLNVVLADADYIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V VRGD V+ +SP
Sbjct: 56 RYGKIV----VRGDNVLAISP 72
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--VTTVEIDDETYEEIVRTTRRTV 77
++ R+ V ++ R+L GK A+D+H+N++LGD EE + + + +T EE R RRT+
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTSEE--REERRTL 70
Query: 78 PFLFVRGDGVI 88
+ +RG+ VI
Sbjct: 71 GLVLLRGEEVI 81
>gi|367050014|ref|XP_003655386.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
gi|347002650|gb|AEO69050.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
Length = 116
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L++ ++ ++ + +RS+R+L ++ A+D+H NMIL +V+E+ T + +
Sbjct: 34 PLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHNGKKGRP 93
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD VI+V
Sbjct: 94 VNKD-RFISKMFLRGDSVIIV 113
>gi|71033371|ref|XP_766327.1| U6 small nuclear ribonucleoprotein E [Theileria parva strain
Muguga]
gi|68353284|gb|EAN34044.1| U6 small nuclear ribonucleoprotein E, putative [Theileria parva]
Length = 90
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV------EE 54
M++ E SAV PL LI L +I++ +++D+E+ G L +D ++NM+L DV +
Sbjct: 1 MSTIEASAVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSPD 60
Query: 55 VVTTVEIDD 63
V T E++D
Sbjct: 61 GVKTTELND 69
>gi|340897383|gb|EGS16973.1| putative RNA splicing factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 211
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT----VEIDDETYEEIVRTTRR 75
++ R+ V L R++ G++ A+D+H+N++L D EE T + + T + +++ +R
Sbjct: 15 INWRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKTKRMQAKPNSSTTQTLIQEEKR 74
Query: 76 TVPFLFVRGDGVILV---SPP 93
T+ VRG +I + SPP
Sbjct: 75 TLGLTIVRGANIIALSVESPP 95
>gi|429964879|gb|ELA46877.1| hypothetical protein VCUG_01651 [Vavraia culicis 'floridensis']
Length = 92
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+E+E K LD ++ + V LRS+R+L G + D H NMIL DV E+ T +
Sbjct: 2 TEDEKKDKLALDFLKNIKNCPCIVNLRSNRKLCGIVRVIDHHFNMILTDVTEIRKTKSKN 61
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVS 91
+ T R + L +RGD VI V
Sbjct: 62 KGVKKREGTTVERKIKCLVLRGDNVISVC 90
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 13/75 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+++ + +KL+ ++ +RG L +DQH+N++L EE+ E + +
Sbjct: 13 SINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGE-------------AKGLG 59
Query: 79 FLFVRGDGVILVSPP 93
+ VRGD V+++SPP
Sbjct: 60 SIVVRGDNVVMISPP 74
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVR 83
+ +K++ D LRGKL +YDQHLN++L DVEE+ + R + + +R
Sbjct: 17 VLIKIKDDITLRGKLRSYDQHLNIVLDDVEEIGEG-------------GSTRKLGTVVIR 63
Query: 84 GDGVILVSP 92
GD V+ +SP
Sbjct: 64 GDTVVFISP 72
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 15/86 (17%)
Query: 10 KEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
K PLD++ L+ + + V L+ RE+RG L YD H+N++L + EE
Sbjct: 3 KRPLDILDQVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVL--------------DKAEE 48
Query: 69 IVRTTRRTVPFLFVRGDGVILVSPPL 94
+ + V L VRGD VI +SP L
Sbjct: 49 VENGQVQKVGTLIVRGDNVIYISPSL 74
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD++ SL+ + VKL+ R RG+L YD H+N++L + EE+ E +D
Sbjct: 3 QRPLDILNESLNGPVIVKLKDGRAFRGELQGYDIHMNLVLDNTEEI---REGEDS----- 54
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
+ + + VRGD V+ +SP
Sbjct: 55 -----KKLGTVVVRGDNVVYISP 72
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--VTTVEIDDETYEEIVRTTRRTV 77
++ R+ V ++ R+L GK A+D+H+N++LGD EE + + + +T EE R RRT+
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEE--REERRTL 70
Query: 78 PFLFVRGDGVI 88
+ +RG+ VI
Sbjct: 71 GLVLLRGEEVI 81
>gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948592|pdb|1M8V|B Chain B, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948593|pdb|1M8V|C Chain C, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948594|pdb|1M8V|D Chain D, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948595|pdb|1M8V|E Chain E, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948596|pdb|1M8V|F Chain F, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948597|pdb|1M8V|G Chain G, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948598|pdb|1M8V|H Chain H, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948599|pdb|1M8V|I Chain I, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948600|pdb|1M8V|J Chain J, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948601|pdb|1M8V|K Chain K, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948602|pdb|1M8V|L Chain L, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948603|pdb|1M8V|M Chain M, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948604|pdb|1M8V|N Chain N, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
Length = 77
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E + E+V+
Sbjct: 7 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG---------EVVK 57
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 58 RYGKIV----IRGDNVLAISP 74
>gi|403332734|gb|EJY65407.1| Small nuclear riboprotein Sm D2 [Oxytricha trifallax]
Length = 103
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+E++ + PL L+ ++ + ++ V R++R+L G++ A+D+H+NM+L +V E+ T
Sbjct: 10 QEDTFHEGPLSLLTKAVKTNSQVLVNCRNNRKLLGRVKAFDRHMNMVLENVCEMWTETPK 69
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + R + +F+RGD VI+V
Sbjct: 70 PHKGKKAHPVNRERYISKMFLRGDSVIIV 98
>gi|443703701|gb|ELU01136.1| hypothetical protein CAPTEDRAFT_149444 [Capitella teleta]
Length = 118
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
E+E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 21 EQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 80
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VILV
Sbjct: 81 TGKGKKKSKPVNKDRFISKMFLRGDSVILV 110
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--VTTVEIDDETYEEIVRTTRRTV 77
++ R+ V ++ R+L GK A+D+H+N++LGD EE + + + +T EE R RRT+
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEE--REERRTL 70
Query: 78 PFLFVRGDGVI 88
+ +RG+ VI
Sbjct: 71 GLVLLRGEEVI 81
>gi|217075318|gb|ACJ86019.1| unknown [Medicago truncatula]
Length = 108
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVGAFDRHCNMVLENVREMWAEVP 72
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 73 KTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 103
>gi|297743892|emb|CBI36862.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+E E PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 75 NEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 134
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 135 KTGKGKKKANPVNKDRFISKMFLRGDSVIIV 165
>gi|412990385|emb|CCO19703.1| Small nuclear ribonucleoprotein Sm D2 [Bathycoccus prasinos]
Length = 97
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
+ ++ + R++R+L G++ A+D+HLN++L +V+EV T E+ + R + L
Sbjct: 24 NSQVLINCRNNRKLLGRVKAFDRHLNLLLENVKEVWTDRNSQKES-KTPPSNKDRFISKL 82
Query: 81 FVRGDGVILV 90
F+RGD +ILV
Sbjct: 83 FLRGDSIILV 92
>gi|380027112|ref|XP_003697276.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis florea]
Length = 133
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + + ++
Sbjct: 41 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 100
Query: 70 VRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ R + +F+RGD VILV PL TA
Sbjct: 101 KPVNKDRFISKMFLRGDSVILVLRNPLATA 130
>gi|367028268|ref|XP_003663418.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
gi|347010687|gb|AEO58173.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L++ ++ ++ + +RS+R+L ++ A+D+H NMIL +V+E+ T + +
Sbjct: 34 PLSLLQTAVRSHAQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHNGKKGRP 93
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD VI+V
Sbjct: 94 VNKD-RFISKMFLRGDSVIIV 113
>gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein [Pyrococcus furiosus DSM 3638]
gi|397652035|ref|YP_006492616.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
gi|23822154|sp|Q8U0P4.1|RUXX_PYRFU RecName: Full=Putative snRNP Sm-like protein
gi|18893680|gb|AAL81666.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus
DSM 3638]
gi|393189626|gb|AFN04324.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
Length = 76
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L + E + E+V+
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLAISP 72
>gi|342886030|gb|EGU85973.1| hypothetical protein FOXB_03482 [Fusarium oxysporum Fo5176]
Length = 133
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D++I VK RE++G L YD +N++L DV EVV E +D T
Sbjct: 47 LDLGKY-MDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGNDST------- 98
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + VRG ++LVSP
Sbjct: 99 --RSLGLVVVRGTLLVLVSP 116
>gi|20093660|ref|NP_613507.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Methanopyrus kandleri AV19]
gi|19886535|gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 14/81 (17%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
P D +R LD+ + V+L++ + LRG+L ++D HLN++L D VEID+++ VR
Sbjct: 3 PHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDD------CVEIDEDSE---VR 53
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
R + +RGD V L+SP
Sbjct: 54 LGR-----VLIRGDSVTLISP 69
>gi|17558868|ref|NP_506004.1| Protein SNR-4 [Caenorhabditis elegans]
gi|2833296|sp|Q18786.1|SMD2_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|3875190|emb|CAB01413.1| Protein SNR-4 [Caenorhabditis elegans]
Length = 118
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 18 AKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 60 EIDDETYEEIVRTTR-RTVPFLFVRGDGVIL-VSPPLRTA 97
+ ++ + R + +F+RGD VIL V PL A
Sbjct: 78 PKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLAQA 117
>gi|242398502|ref|YP_002993926.1| snRNP Sm-like protein [Thermococcus sibiricus MM 739]
gi|259495716|sp|C6A1T2.1|RUXX_THESM RecName: Full=Putative snRNP Sm-like protein
gi|242264895|gb|ACS89577.1| Putative snRNP Sm-like protein [Thermococcus sibiricus MM 739]
Length = 76
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L D + + E E
Sbjct: 5 PLDVIHKSLDKEVLVILKRGAEYRGKLIGYDIHLNVVLADAQLI--------ENGE---- 52
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+++ + +RGD V+ +SP
Sbjct: 53 -PKKSYGKIVIRGDNVLAISP 72
>gi|440292632|gb|ELP85819.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
invadens IP1]
Length = 100
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 1 MASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
M E ++ V P L+ ++++ ++ + R++++L ++ A+D+H NM+L +V+E T
Sbjct: 1 MEEEVKALVDGPFQLLTEAVEKHSQVIINCRNNKKLVCRVKAFDRHFNMVLENVKEYWTE 60
Query: 59 VEIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ E + +T R V +F+RGD VI+V
Sbjct: 61 MQKMPEGKPK-PKTCHRNVSKMFLRGDSVIIV 91
>gi|212223792|ref|YP_002307028.1| small nuclear ribonucleoprotein [Thermococcus onnurineus NA1]
gi|229559994|sp|B6YUU5.1|RUXX_THEON RecName: Full=Putative snRNP Sm-like protein
gi|212008749|gb|ACJ16131.1| Hypothetical small nuclear ribonucleoprotein [Thermococcus
onnurineus NA1]
Length = 78
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L E + E+V+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLAISP 72
>gi|14520857|ref|NP_126332.1| small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
gi|10720266|sp|Q9V0Y8.1|RUXX_PYRAB RecName: Full=Putative snRNP Sm-like protein
gi|27573606|pdb|1H64|1 Chain 1, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573607|pdb|1H64|2 Chain 2, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573608|pdb|1H64|A Chain A, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573609|pdb|1H64|B Chain B, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573610|pdb|1H64|C Chain C, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573611|pdb|1H64|D Chain D, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573612|pdb|1H64|E Chain E, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573613|pdb|1H64|F Chain F, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573614|pdb|1H64|G Chain G, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573615|pdb|1H64|H Chain H, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573616|pdb|1H64|I Chain I, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573617|pdb|1H64|J Chain J, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573618|pdb|1H64|K Chain K, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573619|pdb|1H64|L Chain L, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573620|pdb|1H64|M Chain M, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573621|pdb|1H64|N Chain N, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573622|pdb|1H64|O Chain O, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573623|pdb|1H64|P Chain P, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573624|pdb|1H64|Q Chain Q, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573625|pdb|1H64|R Chain R, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573626|pdb|1H64|S Chain S, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573627|pdb|1H64|T Chain T, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573628|pdb|1H64|U Chain U, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573629|pdb|1H64|V Chain V, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573630|pdb|1H64|W Chain W, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573631|pdb|1H64|X Chain X, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573632|pdb|1H64|Y Chain Y, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573633|pdb|1H64|Z Chain Z, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|5458074|emb|CAB49563.1| Heptameric Sm/Lsm protein [Pyrococcus abyssi GE5]
gi|380741401|tpe|CCE70035.1| TPA: small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
Length = 75
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E + E+V+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 RYGKIV----IRGDNVLAISP 72
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R+L GK A+D+H+N++LGD EE + EE R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEE--REERRTLGL 70
Query: 80 LFVRGDGVI 88
+ +RG+ VI
Sbjct: 71 VLLRGEEVI 79
>gi|308801164|ref|XP_003075361.1| small nuclear ribonucleoprotein D2-like protein (ISS)
[Ostreococcus tauri]
gi|116061917|emb|CAL52635.1| small nuclear ribonucleoprotein D2-like protein (ISS), partial
[Ostreococcus tauri]
Length = 103
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T V + +
Sbjct: 17 PLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGSAKA 76
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R V +F+RGD VILV
Sbjct: 77 KPVNKDRFVSKMFLRGDSVILV 98
>gi|321460184|gb|EFX71229.1| hypothetical protein DAPPUDRAFT_309154 [Daphnia pulex]
Length = 122
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKS 88
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 89 KPVNKDRFISKMFLRGDSVILV 110
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L+ +YVKL+ ++G L ++DQHLN++L E EE+ R++
Sbjct: 18 LNASVYVKLKGGEGVKGVLKSFDQHLNLVL--------------ENAEELTERGSRSLGT 63
Query: 80 LFVRGDGVILVSP 92
+ VRGD ++ +SP
Sbjct: 64 VLVRGDSIVAISP 76
>gi|225437378|ref|XP_002268945.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 104
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+E E PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 9 NEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 68
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 69 KTGKGKKKANPVNKDRFISKMFLRGDSVIIV 99
>gi|50306997|ref|XP_453476.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642610|emb|CAH00572.1| KLLA0D09284p [Kluyveromyces lactis]
Length = 110
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 52/81 (64%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LIR S+ +R + + LR++ +L ++ ++D+H NM+L +V+E+ T ++ +++
Sbjct: 33 PMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEIWT----ENVNGKKV 88
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R R V LF+RGD VI+V
Sbjct: 89 NR--ERFVAKLFLRGDSVIIV 107
>gi|433638868|ref|YP_007284628.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
gi|433290672|gb|AGB16495.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
Length = 99
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L +R+ V L++ E G+L YDQH+N++L + E T+ E +E
Sbjct: 24 PLDVLEAALGDRVRVHLKTGTEYVGELAGYDQHMNLVLEEAERTATS-ETTPANGDEETS 82
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ T+ +RGD V+ ++P
Sbjct: 83 SQDTTI----IRGDNVVSINP 99
>gi|67624703|ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|126649020|ref|XP_001388072.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|54659846|gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
gi|126117160|gb|EAZ51260.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 106
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 2 ASEEESAVKEPLDLIR--LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+++++ + PL L+ + + +I V R++R++ G++ A+D+H N++L D E+ T
Sbjct: 11 TTKKDNPSEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTES 70
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ R + LFVRGD VIL+
Sbjct: 71 MKSGKKGSAKYINKDRFISKLFVRGDSVILI 101
>gi|407919352|gb|EKG12602.1| hypothetical protein MPH_10268 [Macrophomina phaseolina MS6]
Length = 81
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D+ I VK RE+ G L YDQ +N++L DV+EV+ DDE E T R++
Sbjct: 1 MDKGISVKFNGGREVTGTLKGYDQLMNLVLDDVKEVMR----DDEGNE-----TTRSLGL 51
Query: 80 LFVRGDGVILVSP 92
+ RG ++L+SP
Sbjct: 52 IVARGTLLVLISP 64
>gi|315230063|ref|YP_004070499.1| snRNP Sm-like protein [Thermococcus barophilus MP]
gi|315183091|gb|ADT83276.1| putative snRNP Sm-like protein [Thermococcus barophilus MP]
Length = 76
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L D +++ E+ + Y +IV
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADA-QLIEGGEV-TKKYGKIV- 61
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+RGD V+ +SP
Sbjct: 62 ----------IRGDNVLAISP 72
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R+L GK A+D+H+N++LGD EE + + R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTTDGDREDRRTLGL 72
Query: 80 LFVRGDGVILVS---PP 93
+ +RG+ VI ++ PP
Sbjct: 73 VLLRGEEVISMAVEGPP 89
>gi|193891015|gb|ACF28661.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 94
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MAS PL LI + RI+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 1 MASVSSGPSYLPLALIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGD 85
T E + + + GD
Sbjct: 61 GKKVTQLESILLNGNNITMMVPGGD 85
>gi|403166044|ref|XP_003325954.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375166048|gb|EFP81535.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 128
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI+V +++ RE GKL +D ++NM+L DV E TT E
Sbjct: 7 PLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAE 55
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 78
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 13/89 (14%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
E+ + PLDL+ + + + V+L++ + GKL A+D H+N+ L + EE + D +T
Sbjct: 3 ENVLSRPLDLLNSAKGKMVLVELKNGHAITGKLVAFDVHINVTLENAEE-----KKDADT 57
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSPPL 94
R + +F+RGD +IL+SP +
Sbjct: 58 L--------RKLGNVFIRGDTIILISPTI 78
>gi|354543718|emb|CCE40440.1| hypothetical protein CPAR2_104760 [Candida parapsilosis]
Length = 111
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI + E + + R++ +L GK+ A+D+H N++L +V+E+ T + +E +
Sbjct: 29 PMSLINQAQKENTPVIISCRNNHKLVGKIRAFDRHCNLVLENVKELWTET-VKNEFNQTK 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ R + LF+RGD VI++
Sbjct: 88 SVSRERFISKLFLRGDSVIII 108
>gi|330793131|ref|XP_003284639.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
gi|325085438|gb|EGC38845.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
Length = 116
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 10 KEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
K PL ++ S++ ++ + +R++++L G++ A+D+H NM+L +V+E+ T V + +
Sbjct: 21 KGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKK 80
Query: 68 EIVRTTR-RTVPFLFVRGDGVILV 90
+ + R + +F+RGD VILV
Sbjct: 81 KAKPINKDRFISKMFLRGDSVILV 104
>gi|345563731|gb|EGX46716.1| hypothetical protein AOL_s00097g464 [Arthrobotrys oligospora ATCC
24927]
Length = 168
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+RI VK RE+ G L YDQ +N++L DV+EV+ DDE E+
Sbjct: 80 LDLAKY-MDKRIIVKFSGGREVTGALKGYDQLMNLVLDDVQEVMR----DDEGNEQT--- 131
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R + + RG ++L+SP
Sbjct: 132 --RELGLVVARGPLLVLISP 149
>gi|170085071|ref|XP_001873759.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651311|gb|EDR15551.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL+LI + RI+V ++SDRE GKL +D +NM+L DV E TT
Sbjct: 7 PLELIDRCIGSRIWVIMKSDREFTGKLLGFDDFVNMVLEDVTEYETT 53
>gi|119872589|ref|YP_930596.1| like-Sm ribonucleoprotein, core [Pyrobaculum islandicum DSM 4184]
gi|119673997|gb|ABL88253.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
islandicum DSM 4184]
Length = 80
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 14/92 (15%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MAS+ ++ ++ +++ VKLR E+RG L ++DQH+N++L D EE+
Sbjct: 1 MASDVSKCFATLGATLQDAIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEI----- 55
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
ID Y+ R T+ +RG+ V+ +SP
Sbjct: 56 IDGNVYK------RGTI---VIRGENVLFISP 78
>gi|341581440|ref|YP_004761932.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
gi|340809098|gb|AEK72255.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
Length = 76
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D + + EE+ R
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALI--------QEGEEVKR 56
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>gi|341904454|gb|EGT60287.1| CBN-SNR-4 protein [Caenorhabditis brenneri]
Length = 118
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 18 AKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 60 EIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VILV
Sbjct: 78 PKTGKGKKKAKSVAKDRFISKMFLRGDSVILV 109
>gi|320590837|gb|EFX03280.1| small nuclear ribonucleoprotein sm d2 [Grosmannia clavigera kw1407]
Length = 116
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL +++ ++ ++ + +RS+R+L ++ A+D+H NMIL +V+E+ T + +
Sbjct: 34 PLSILQTAVRTHTQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVTNGKKGRP 93
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD VILV
Sbjct: 94 VNKD-RFISKMFLRGDSVILV 113
>gi|308503579|ref|XP_003113973.1| CRE-SNR-4 protein [Caenorhabditis remanei]
gi|308261358|gb|EFP05311.1| CRE-SNR-4 protein [Caenorhabditis remanei]
Length = 118
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 18 AKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 60 EIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VILV
Sbjct: 78 PKTGKGKKKAKSVAKDRFISKMFLRGDSVILV 109
>gi|257076591|ref|ZP_05570952.1| small nuclear ribonucleoprotein [Ferroplasma acidarmanus fer1]
Length = 84
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 14/94 (14%)
Query: 1 MASEEESA-VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
M + S V +P++ ++ SL++ I + ++ +R G L YD ++N++L + E
Sbjct: 1 MVNNNRSGYVPKPMETLKNSLEKNIMIDVKGNRMYSGILEGYDIYMNLVLKNATET---- 56
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPP 93
I++E + T + +RGD +I VSPP
Sbjct: 57 -INNE--------NKGTFSMMLLRGDNIIFVSPP 81
>gi|307596528|ref|YP_003902845.1| Sm ribonucleoprotein-like protein [Vulcanisaeta distributa DSM
14429]
gi|307551729|gb|ADN51794.1| Like-Sm ribonucleoprotein core [Vulcanisaeta distributa DSM
14429]
Length = 77
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 14/74 (18%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
SL++ I VKLR+ E+RG L YDQHLN++L + EEV +
Sbjct: 15 SLNKVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEEVNPKGGVKGG-------------- 60
Query: 79 FLFVRGDGVILVSP 92
+ +RGD V+ +SP
Sbjct: 61 LMIIRGDTVLFISP 74
>gi|258563080|ref|XP_002582285.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907792|gb|EEP82193.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 139
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ ++VK RE+ G L YDQ +N++L DV+E++ E +D T
Sbjct: 53 LDLTKY-MDKEVHVKFSGGREVTGTLKGYDQLMNLVLDDVKEIMRDDEGNDST------- 104
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + RG ++L+SP
Sbjct: 105 --RSLGLIVARGTLLVLISP 122
>gi|221114937|ref|XP_002158231.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Hydra magnipapillata]
Length = 118
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V+E+ + + +
Sbjct: 28 PLSVLMTSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWYEIPKTGKGKKAK 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 88 PINKDRYIAKMFLRGDSVILV 108
>gi|224010870|ref|XP_002294392.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969887|gb|EED88226.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 131
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
L+L +L +D + VK RELRG L YD+ +N++L D EE + D E E I
Sbjct: 36 LELAKL-VDSSVRVKCLGGRELRGALRGYDELVNLVLDDCEEFMR----DPEDPETITNQ 90
Query: 73 TRRTVPFLFVRGDGVILVSP 92
TR+ + + +RG V LVSP
Sbjct: 91 TRK-LGLVVIRGTQVSLVSP 109
>gi|254167717|ref|ZP_04874567.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
gi|197623245|gb|EDY35810.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
Length = 53
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGV 87
++ ++E RG L YDQHLN++L +VEE++ ++ + VRGD V
Sbjct: 1 MKGNKEYRGVLDGYDQHLNLVLKNVEEIING-------------ESKGVHNVVIVRGDNV 47
Query: 88 ILVSPP 93
I +SPP
Sbjct: 48 IYISPP 53
>gi|145509212|ref|XP_001440550.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407767|emb|CAK73153.1| unnamed protein product [Paramecium tetraurelia]
Length = 152
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EE + K P L+ ++++ + +++LR++R+ G++ A+D+H+NMIL ++ E+ +
Sbjct: 48 TAEEATLEKGPFGLLTITMNHNTQAFLELRNNRKHLGRVKAFDRHMNMILENLTEM--WI 105
Query: 60 EIDDETYEEIVRTTRRT-----------VPFLFVRGDGVI 88
EI ET + +R +P +F+RGD VI
Sbjct: 106 EISKETKGKSPCYKQRKIQNQYKIIFYYIPKMFLRGDSVI 145
>gi|440634700|gb|ELR04619.1| hypothetical protein GMDG_06901 [Geomyces destructans 20631-21]
Length = 137
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+ ++E KE LDL + +D+RI VK RE+ G L YD +N++L DV+EV+
Sbjct: 40 SQQQERPKKENILDLSKY-MDKRITVKFNGGREVTGALKGYDALMNLVLDDVQEVLR--- 95
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DD+ E T R++ + RG ++LVSP
Sbjct: 96 -DDDGNE-----TTRSLGLVVARGTLLVLVSP 121
>gi|46130650|ref|XP_389105.1| hypothetical protein FG08929.1 [Gibberella zeae PH-1]
gi|408391559|gb|EKJ70933.1| hypothetical protein FPSE_08901 [Fusarium pseudograminearum CS3096]
Length = 131
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D++I VK RE++G L YD +N++L DV EVV DDE E
Sbjct: 45 LDLGKY-MDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVR----DDEGNE----- 94
Query: 73 TRRTVPFLFVRGDGVILVSP 92
+ R++ + VRG ++LVSP
Sbjct: 95 STRSLGLVVVRGTLLVLVSP 114
>gi|223478369|ref|YP_002582798.1| snRNP Sm-like protein [Thermococcus sp. AM4]
gi|240103795|ref|YP_002960104.1| small nuclear ribonucleoprotein [Thermococcus gammatolerans EJ3]
gi|259495715|sp|C5A1H1.1|RUXX_THEGJ RecName: Full=Putative snRNP Sm-like protein
gi|214033595|gb|EEB74422.1| hypothetical snRNP Sm-like protein [Thermococcus sp. AM4]
gi|239911349|gb|ACS34240.1| Small nuclear ribonucleoprotein (snRNP)-like protein, Sm-like
protein [Thermococcus gammatolerans EJ3]
Length = 76
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L + + E+V+
Sbjct: 5 PLDVIHRSLDKDVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ + V VRGD V+ +SP
Sbjct: 56 SYGKIV----VRGDNVLAISP 72
>gi|390960267|ref|YP_006424101.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
gi|390518575|gb|AFL94307.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
Length = 76
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D + + EE+ R
Sbjct: 5 PLDVIHRSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALI--------QDGEEVKR 56
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>gi|403166042|ref|XP_003889979.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
gi|375166047|gb|EHS63049.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
Length = 84
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI+V +++ RE GKL +D ++NM+L DV E TT E
Sbjct: 7 PLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAE 55
>gi|168044533|ref|XP_001774735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673890|gb|EDQ60406.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 103
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 17 PLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 76
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 77 KPVNKDRFISKMFLRGDSVIIV 98
>gi|145590308|ref|YP_001152310.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005411|ref|YP_005261083.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145282076|gb|ABP49658.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160864|gb|AFA40476.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 80
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 14/74 (18%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+ +++ VKLR E+RG L ++DQH+N++L D EE+ ID ++ R T+
Sbjct: 19 SIGKQVLVKLRDSHEIRGVLRSFDQHVNLLLEDAEEI-----IDGNVFK------RGTI- 66
Query: 79 FLFVRGDGVILVSP 92
VRG+ V+ +SP
Sbjct: 67 --VVRGENVLFISP 78
>gi|448353248|ref|ZP_21542025.1| Sm ribonucleoprotein-like protein [Natrialba hulunbeirensis JCM
10989]
gi|445640825|gb|ELY93911.1| Sm ribonucleoprotein-like protein [Natrialba hulunbeirensis JCM
10989]
Length = 84
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL ER+ V+L+S E G+L YDQH+N++L
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVL 42
>gi|189208117|ref|XP_001940392.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330933723|ref|XP_003304270.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|187976485|gb|EDU43111.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311319198|gb|EFQ87625.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|451847200|gb|EMD60508.1| hypothetical protein COCSADRAFT_163837 [Cochliobolus sativus
ND90Pr]
gi|451997866|gb|EMD90331.1| hypothetical protein COCHEDRAFT_1157376 [Cochliobolus
heterostrophus C5]
Length = 117
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ R + + R++R++ ++ A+D+H NM+L + +E+ T T
Sbjct: 26 EEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPR 85
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + +Y V R + LF+RGD VILV
Sbjct: 86 LANGSYGRKVNKD-RFISKLFLRGDSVILV 114
>gi|260835152|ref|XP_002612573.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
gi|229297951|gb|EEN68582.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
Length = 116
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
E+E PL ++ S+ + ++ + R++++L ++ A+D+H NM+L +V+E+ T V
Sbjct: 17 EQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPK 76
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ ++ + R + +F+RGD VILV PL TA
Sbjct: 77 TGKGKKKSKPINKDRYISKMFLRGDSVILVLRNPLATA 114
>gi|300175427|emb|CBK20738.2| unnamed protein product [Blastocystis hominis]
Length = 457
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 3 SEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
SEE + PL ++ ++ + + +R++ +L + A+D+H NM+L +V+E+ T V
Sbjct: 359 SEEAEFAQGPLSILYRAVKNGTSVLINVRNNHKLLCHVKAFDRHCNMVLENVKEIWTEVP 418
Query: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILVS 91
+ ++ T+ R +P LF+RGD V++V
Sbjct: 419 KSGKGKKKAKAITKDRFIPKLFLRGDSVVVVC 450
>gi|68071819|ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56498082|emb|CAH95523.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 101
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
+ ++ + R++R+L G++ A+D+H N++L +V E+ VE+ + ++ R + L
Sbjct: 29 NAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREI--WVEVIKDKKKKKKINKDRYISIL 86
Query: 81 FVRGDGVILV 90
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|115629150|ref|XP_001178435.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
gi|115918091|ref|XP_001177365.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
Length = 118
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPKAGKGKKRS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ R + +F+RGD VILV PL TA
Sbjct: 88 KPVNKDRYITKMFLRGDSVILVLRNPLATA 117
>gi|291224549|ref|XP_002732266.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-4)-like [Saccoglossus kowalevskii]
Length = 123
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKS 92
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 93 KPVNKDRYISKMFLRGDSVILV 114
>gi|358053885|dbj|GAB00018.1| hypothetical protein E5Q_06720 [Mixia osmundae IAM 14324]
Length = 111
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE + PL++++ S+ +I V LR+ +L ++ A+D+H NM+L +V+E+ T
Sbjct: 19 ALEEHEISQGPLNVLQQSVKNHTQILVALRNGHKLLARVKAFDRHSNMVLENVKEMWT-- 76
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
EI ++ V R + LF+RGD VI+V
Sbjct: 77 EIPKGKNKKPVNKD-RFISKLFLRGDSVIMV 106
>gi|332376785|gb|AEE63532.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRPGKGKKKA 86
Query: 70 VRTTR-RTVPFLFVRGDGVIL-VSPPLRTA 97
+ R + +F+RGD VI+ V PL TA
Sbjct: 87 KPVNKDRFISKMFLRGDAVIMIVRNPLATA 116
>gi|156361110|ref|XP_001625363.1| predicted protein [Nematostella vectensis]
gi|156212193|gb|EDO33263.1| predicted protein [Nematostella vectensis]
Length = 119
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
E+E PL ++ S+ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 21 EQEEFNTGPLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPK 80
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ ++ + R + +F+RGD VILV PL TA
Sbjct: 81 SGKGKKKAKPVNKDRYIAKMFLRGDSVILVLRNPLATA 118
>gi|331242627|ref|XP_003333959.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312949|gb|EFP89540.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|328861040|gb|EGG10144.1| hypothetical protein MELLADRAFT_94522 [Melampsora larici-populina
98AG31]
Length = 111
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE PL +++ S+ +I + LR++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 19 ALEEHEIATGPLSVLQSSVKNHTQILIALRNNRKLLARVKAFDRHSNMVLVNVKEMWT-- 76
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
E+ ++ V R + +F+RGD VILV
Sbjct: 77 ELPKGKNKKPVNKD-RFISKMFLRGDSVILV 106
>gi|121701131|ref|XP_001268830.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
clavatus NRRL 1]
gi|119396973|gb|EAW07404.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
clavatus NRRL 1]
Length = 140
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E + DDE E
Sbjct: 55 LDLSKY-MDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMR----DDEGNE----- 104
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 105 TTRSLGLIVARGTLIVLISP 124
>gi|409721748|ref|ZP_11269904.1| Sm ribonucleoprotein-like protein [Halococcus hamelinensis 100A6]
gi|448721880|ref|ZP_21704423.1| Sm ribonucleoprotein-like protein [Halococcus hamelinensis 100A6]
gi|445790952|gb|EMA41602.1| Sm ribonucleoprotein-like protein [Halococcus hamelinensis 100A6]
Length = 74
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L +R+ V+L+ G+L YDQH+N++L EE +D E +
Sbjct: 5 PLDVLEATLGDRVTVRLKDGAAYAGELGGYDQHMNVVLDPAEE----DPANDAATETVES 60
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
TT +RGD V+ ++P
Sbjct: 61 TT-------IIRGDNVVSITP 74
>gi|398407359|ref|XP_003855145.1| hypothetical protein MYCGRDRAFT_55886 [Zymoseptoria tritici
IPO323]
gi|339475029|gb|EGP90121.1| hypothetical protein MYCGRDRAFT_55886 [Zymoseptoria tritici
IPO323]
Length = 83
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D+ I VK RE+ G L YDQ +N++L +V+E+ T +E T+ R++
Sbjct: 1 MDKDINVKFNGGREVTGTLKGYDQLMNLVLDNVKEM---------TRDEEGNTSSRSLGL 51
Query: 80 LFVRGDGVILVSP 92
L VRG ++L+SP
Sbjct: 52 LVVRGTLLVLISP 64
>gi|66809065|ref|XP_638255.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853875|sp|Q54NC5.1|SMD2_DICDI RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|60466721|gb|EAL64772.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 112
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S++ ++ + +R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 19 PLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKA 78
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 79 KPINKDRFISKMFLRGDSVILV 100
>gi|224010008|ref|XP_002293962.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970634|gb|EED88971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 108
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ V +R++ +L G++ AYD+H+N++L DV+E+ T + + + R V
Sbjct: 25 NTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEYSKGGKGRKRGTSINKDRYVSK 84
Query: 80 LFVRGDGVILV 90
+F+RGD VILV
Sbjct: 85 MFLRGDSVILV 95
>gi|340959200|gb|EGS20381.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 592
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL L++ ++ ++ + +RS R+L ++ A+D+H NMIL +V+E+ T +
Sbjct: 502 EEWEMANGPLSLLQTAVRSHTQVLISVRSGRKLLARVKAFDRHCNMILENVKEMWTETPV 561
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R + +F+RGD V++V
Sbjct: 562 TNGKKGRPVNKD-RFISKMFLRGDSVVIV 589
>gi|325183558|emb|CCA18019.1| hypothetical protein SORBIDRAFT_06g022770 [Albugo laibachii Nc14]
Length = 110
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE K PL ++ S+ + ++ + +R++ +L ++ A+D+H NM+L +V+E+ T V
Sbjct: 15 NEEDFQKGPLSILMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPK 74
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ + + R V LF+RGD V+LV
Sbjct: 75 SGKGKKSGKPVNKDRFVSKLFLRGDSVVLV 104
>gi|452846138|gb|EME48071.1| hypothetical protein DOTSEDRAFT_21783 [Dothistroma septosporum
NZE10]
Length = 121
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
E+ PL L++ ++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T +
Sbjct: 30 EQHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEIPR 89
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + R + +F+RGD VILV
Sbjct: 90 LADGKKGRAVNKDRFISKMFLRGDSVILV 118
>gi|312078721|ref|XP_003141861.1| small Nuclear Ribonucleoprotein family member [Loa loa]
gi|307762971|gb|EFO22205.1| small nuclear ribonucleoprotein Sm D2 [Loa loa]
Length = 121
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 3 SEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
++EE A KE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+
Sbjct: 12 TQEELAAKEQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71
Query: 54 EVVTTVEIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
E+ T + + ++ + R + +F+RGD VI+V
Sbjct: 72 EMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIV 109
>gi|268557296|ref|XP_002636637.1| C. briggsae CBR-SNR-4 protein [Caenorhabditis briggsae]
Length = 118
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 88 KSVAKDRFISKMFLRGDSVILV 109
>gi|119495066|ref|XP_001264327.1| small nuclear ribonucleoprotein (LSM7), putative [Neosartorya
fischeri NRRL 181]
gi|119412489|gb|EAW22430.1| small nuclear ribonucleoprotein (LSM7), putative [Neosartorya
fischeri NRRL 181]
Length = 138
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E + DDE E
Sbjct: 53 LDLSKY-MDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMR----DDEGNE----- 102
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 103 TTRSLGLIVARGTLIVLISP 122
>gi|353237783|emb|CCA69748.1| probable small nuclear ribonucleoprotein chain D2 [Piriformospora
indica DSM 11827]
Length = 122
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE + PL +++ S+ +I + LR++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 30 ALEEHEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHSNMVLENVKEMWT-- 87
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
E ++ V R + +F+RGD VILV
Sbjct: 88 ETPSGKNKKPVNKD-RFISKMFLRGDSVILV 117
>gi|367005899|ref|XP_003687681.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
gi|357525986|emb|CCE65247.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
Length = 109
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI S+ + + + LR++ ++ ++ A+D+H NM+L +V+E+ T E ++
Sbjct: 29 PMSLINDSMIAKTPVIISLRNNHKIIARVKAFDKHCNMVLENVKELWT------EKNKDK 82
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + LF+RGD VI+V
Sbjct: 83 VINKERFISKLFLRGDSVIIV 103
>gi|123414193|ref|XP_001304446.1| Sm protein [Trichomonas vaginalis G3]
gi|121885898|gb|EAX91516.1| Sm protein [Trichomonas vaginalis G3]
Length = 111
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLF 81
E + + LRS+R+L G + A D+H NMIL V E+ T + + +R + LF
Sbjct: 35 EPLLIALRSNRKLYGYIKAVDRHWNMILEHVIEITPT---PAKPGQPAAAPIQRRINRLF 91
Query: 82 VRGDGVILVSP 92
+RGD VI + P
Sbjct: 92 LRGDNVICIYP 102
>gi|323456239|gb|EGB12106.1| hypothetical protein AURANDRAFT_20164 [Aureococcus
anophagefferens]
Length = 104
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L+ S+ + ++ + +R++ +L ++ A+D+H NM+L +V+EV T + + ++
Sbjct: 16 PLSLLLHSMKSNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEVWTEIPKTGKGKKKS 75
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 76 KPVNKERYISKMFLRGDSVILV 97
>gi|405978739|gb|EKC43103.1| Putative small nuclear ribonucleoprotein Sm D2 [Crassostrea gigas]
Length = 119
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
E+E PL ++ S+ + ++ + R++++L ++ A+D+H NM+L +V+E+ T V
Sbjct: 21 EQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPK 80
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV-SPPLRTA 97
+ ++ + R + +F+RGD VIL+ P+ TA
Sbjct: 81 TGKGKKKSKPVNKDRYISKMFLRGDSVILILRNPMATA 118
>gi|358342021|dbj|GAA49579.1| small nuclear ribonucleoprotein D2 [Clonorchis sinensis]
Length = 124
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ + R++++L ++ A+D+H NM+L +V+E+ T V + ++ + R +
Sbjct: 41 NTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRYISK 100
Query: 80 LFVRGDGVILV-SPPLRTA 97
LF+RGD VILV PL TA
Sbjct: 101 LFLRGDSVILVLRNPLATA 119
>gi|397621815|gb|EJK66477.1| hypothetical protein THAOC_12605 [Thalassiosira oceanica]
Length = 112
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ V +R++ +L G++ AYD+H+N++L DV+E+ T + + + R V
Sbjct: 30 NTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEQSKGGKGKKRGTSVNKDRYVSK 89
Query: 80 LFVRGDGVILV 90
+F+RGD VILV
Sbjct: 90 MFLRGDSVILV 100
>gi|290999453|ref|XP_002682294.1| predicted protein [Naegleria gruberi]
gi|284095921|gb|EFC49550.1| predicted protein [Naegleria gruberi]
Length = 103
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+E + +PL+LI + I+V ++ D+EL G L +D ++NMIL +V E +
Sbjct: 6 TENTIPIIQPLELIDKCIGSSIFVLMKDDKELVGTLRGFDDYINMILDNVTEYSYS---- 61
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSPPL 94
E+ T +P + + G+ V +++P L
Sbjct: 62 ----EDGSSRTESKLPSIILNGNNVAILAPGL 89
>gi|156042123|ref|XP_001587619.1| hypothetical protein SS1G_11612 [Sclerotinia sclerotiorum 1980]
gi|154695995|gb|EDN95733.1| hypothetical protein SS1G_11612 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 74
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 40 AYDQHLNMILGDVEEVVTTVEIDDETYEE-IVRTTRRTVPFLFVRGDGVILVSP 92
AYD H N++LGDV E + VE +E EE I++T + LFVRGD VIL+SP
Sbjct: 18 AYDSHCNLVLGDVVETIYVVEEGEEDDEEEIIKTVVKKSEMLFVRGDSVILISP 71
>gi|375082287|ref|ZP_09729353.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
gi|374743044|gb|EHR79416.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
Length = 76
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D + + E E
Sbjct: 5 PLDVIHKSLDKEVLVILKRGAEFRGRLIGYDIHLNVVLADAQLI--------EDGE---- 52
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
++ + +RGD V+ +SP
Sbjct: 53 -PKKNYGKIVIRGDNVLAISP 72
>gi|303317868|ref|XP_003068936.1| U6 snRNA-associated Sm-like protein LSm7, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108617|gb|EER26791.1| U6 snRNA-associated Sm-like protein LSm7, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038992|gb|EFW20927.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 144
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ ++VK RE+ G L YDQ +N++L +V+E + DDE E
Sbjct: 59 LDLTKY-MDKEVHVKFSGGREVTGTLKGYDQLMNLVLDEVKETMR----DDEGNE----- 108
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 109 TTRSLGLIVARGTLLVLISP 128
>gi|256085048|ref|XP_002578736.1| small nuclear ribonucleoprotein Sm D2 [Schistosoma mansoni]
gi|360045476|emb|CCD83024.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
mansoni]
Length = 124
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ + R++++L ++ A+D+H NM+L +V+E+ T V + ++ + R +
Sbjct: 40 NTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISK 99
Query: 80 LFVRGDGVILV-SPPLRTA 97
LF+RGD VILV PL TA
Sbjct: 100 LFLRGDSVILVLRNPLATA 118
>gi|226470754|emb|CAX76810.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470756|emb|CAX76811.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470758|emb|CAX76812.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470760|emb|CAX76813.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470762|emb|CAX76814.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470764|emb|CAX76815.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470766|emb|CAX76816.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470768|emb|CAX76817.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473196|emb|CAX71284.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473198|emb|CAX71285.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473200|emb|CAX71286.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473202|emb|CAX71287.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 124
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ + R++++L ++ A+D+H NM+L +V+E+ T V + ++ + R +
Sbjct: 40 NTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISK 99
Query: 80 LFVRGDGVILV-SPPLRTA 97
LF+RGD VILV PL TA
Sbjct: 100 LFLRGDSVILVLRNPLATA 118
>gi|112253319|gb|ABI14247.1| Sm-like protein [Pfiesteria piscicida]
gi|112253321|gb|ABI14248.1| small nuclear ribonucleoprotein D2-like protein [Pfiesteria
piscicida]
Length = 101
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 1 MASEEESAVKEPLDLIRLSL-------DERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
MA E + K+ D+ LS+ + ++ + R++R++ ++ A+D+H NM+L +V
Sbjct: 1 MADEAKPEEKDNFDVGPLSVLQKCVKDNSQVLINCRNNRKILARVKAFDRHSNMVLENVR 60
Query: 54 EVVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
E+ T V + + V R + LF+RGD VILV
Sbjct: 61 EMWTEVPHGGKKKAKPVNKD-RFITKLFLRGDSVILV 96
>gi|346977239|gb|EGY20691.1| hypothetical protein VDAG_10320 [Verticillium dahliae VdLs.17]
Length = 140
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D++I VK RE+ G L YD +N++L DVEEV+ DDE E
Sbjct: 54 LDLGKY-MDKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMR----DDEGKENT--- 105
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + RG ++LVSP
Sbjct: 106 --RSLGLVVARGTLLVLVSP 123
>gi|302419873|ref|XP_003007767.1| RH73529p [Verticillium albo-atrum VaMs.102]
gi|261353418|gb|EEY15846.1| RH73529p [Verticillium albo-atrum VaMs.102]
Length = 141
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D++I VK RE+ G L YD +N++L DVEEV+ DDE E
Sbjct: 55 LDLGKY-MDKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMR----DDEGKENT--- 106
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + RG ++LVSP
Sbjct: 107 --RSLGLVVARGTLLVLVSP 124
>gi|70942126|ref|XP_741266.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|70945863|ref|XP_742706.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519539|emb|CAH84536.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
gi|56521836|emb|CAH78030.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi chabaudi]
Length = 101
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
+ ++ + R++R+L G++ A+D+H N++L +V E+ VE+ + ++ R + L
Sbjct: 29 NAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREI--WVEVVKDKKKKKKINKDRYISIL 86
Query: 81 FVRGDGVILV 90
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|119186309|ref|XP_001243761.1| hypothetical protein CIMG_03202 [Coccidioides immitis RS]
gi|392870472|gb|EAS32278.2| hypothetical protein CIMG_03202 [Coccidioides immitis RS]
Length = 144
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ ++VK RE+ G L YDQ +N++L +V+E + DDE E
Sbjct: 59 LDLTKY-MDKEVHVKFSGGREVTGTLKGYDQLMNLVLDEVKETMR----DDEGNE----- 108
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 109 TTRSLGLIVARGTLLVLISP 128
>gi|406861450|gb|EKD14504.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 133
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D++I VK RE+ G L YD +N++L DV+EV+ DDE T
Sbjct: 48 LDLGKY-MDKKITVKFTGGREVTGTLKGYDALMNLVLDDVDEVLR----DDEG-----NT 97
Query: 73 TRRTVPFLFVRGDGVILVSP 92
+ R++ + RG ++LVSP
Sbjct: 98 SSRSLGLVVARGTLLVLVSP 117
>gi|390597684|gb|EIN07083.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 84
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI+V +++DRE G L +D +NM+L DV E TT E
Sbjct: 7 PLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTEFETTPE 55
>gi|170594601|ref|XP_001902052.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain. [Brugia malayi]
gi|158590996|gb|EDP29611.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain., putative [Brugia malayi]
Length = 121
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 3 SEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
++EE A KE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+
Sbjct: 12 TQEELAAKEQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71
Query: 54 EVVTTVEIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
E+ T + + ++ + R + +F+RGD VI++
Sbjct: 72 EMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIII 109
>gi|428672985|gb|EKX73898.1| U6 small nuclear ribonucleoprotein E, putative [Babesia equi]
Length = 88
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M++ E SA PL LI L +I++ ++ D+E+ G L +D ++NM+L +V E T E
Sbjct: 1 MSTIESSACYLPLALIDKCLGSKIWIIMKGDKEIAGILRGFDDYMNMVLEEVTEYSFTPE 60
>gi|448517223|ref|XP_003867742.1| Smd2 core Sm protein [Candida orthopsilosis Co 90-125]
gi|380352081|emb|CCG22305.1| Smd2 core Sm protein [Candida orthopsilosis]
Length = 111
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + P+ LI + + + + R++ +L GK+ A+D+H N++L +V+E+ T +
Sbjct: 21 EEFEFLHGPMSLINQAQKQNTPVIISCRNNHKLVGKIRAFDRHCNLVLENVKELWTET-V 79
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+E + + R + +F+RGD VI++
Sbjct: 80 KNEFNQTKSVSRERFISKMFLRGDSVIII 108
>gi|448727785|ref|ZP_21710134.1| Like-Sm ribonucleoprotein core [Halococcus morrhuae DSM 1307]
gi|445789771|gb|EMA40450.1| Like-Sm ribonucleoprotein core [Halococcus morrhuae DSM 1307]
Length = 78
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL----GDVEEVVTTVEIDDETYE 67
PLD++ +L + + V+L+ G+L YDQHLN++L GD E +DE E
Sbjct: 5 PLDVLEANLGDGVAVRLKDGATYTGELGGYDQHLNVVLEPAGGDSEPSAG----EDEATE 60
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
+ TT +RGD V+ ++P
Sbjct: 61 TVESTT-------IIRGDNVVSITP 78
>gi|402217994|gb|EJT98072.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 111
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + PL +++ S+ +I + LR++R+L ++ A+D+H NM+L +V+E+ T E+
Sbjct: 21 EEYEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHTNMVLENVKEMWT--EV 78
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ V R + +F+RGD VILV
Sbjct: 79 PKGKGKKPVNKD-RFISKMFLRGDSVILV 106
>gi|307108556|gb|EFN56796.1| hypothetical protein CHLNCDRAFT_22041 [Chlorella variabilis]
Length = 115
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPFLF 81
++ + R++R+L G++ A+D+H NM+L +V+E T + + + + R + +F
Sbjct: 42 QVLINCRNNRKLLGRVKAFDRHCNMVLENVKEFWTEIPKRGKGAKASKPVNKDRFISKMF 101
Query: 82 VRGDGVILV 90
+RGD VILV
Sbjct: 102 LRGDSVILV 110
>gi|157124529|ref|XP_001654090.1| small nuclear ribonucleoprotein sm d2 [Aedes aegypti]
gi|108873936|gb|EAT38161.1| AAEL009914-PA [Aedes aegypti]
Length = 119
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKV 86
Query: 69 IVRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 87 KPVNKDRFISKMFLRGDSVILV 108
>gi|84994530|ref|XP_951987.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
gi|65302148|emb|CAI74255.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 106
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ + E ++ + R++R++ ++ A+D+H NMIL DV E+ T T ++
Sbjct: 23 PLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTDVREMWTVR--GKGTGKKK 80
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ T R + LF+RGD VI+V
Sbjct: 81 LETKDRFITRLFLRGDSVIVV 101
>gi|82915132|ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23485713|gb|EAA20539.1| small nuclear ribonucleoprotein. [Plasmodium yoelii yoelii]
Length = 101
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
+ ++ + R++R+L G++ A+D+H N++L +V E+ VEI + ++ R + L
Sbjct: 29 NAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREI--WVEIIKDKKKKKKINKDRYISIL 86
Query: 81 FVRGDGVILV 90
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|170030740|ref|XP_001843246.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
gi|167867922|gb|EDS31305.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
Length = 119
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRAGKGKKKV 86
Query: 69 IVRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 87 KPVNKDRFISKMFLRGDSVILV 108
>gi|325968287|ref|YP_004244479.1| Sm ribonucleoprotein-like protein [Vulcanisaeta moutnovskia
768-28]
gi|323707490|gb|ADY00977.1| Like-Sm ribonucleoprotein core [Vulcanisaeta moutnovskia 768-28]
Length = 72
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
+L++ I VKLR+ E+RG L YDQHLN++L + EE+ +
Sbjct: 11 NLNKVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEEINPKGGVKS--------------G 56
Query: 79 FLFVRGDGVILVSPPL 94
+ +RGD V+ +SP +
Sbjct: 57 LMIIRGDTVLFISPSI 72
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--VTTVEIDDETYEEIVRTTRRTV 77
++ R+ V ++ R+L GK A+D+H+N++LGD EE + + +T E+ R RRT+
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGSKKTKED--REERRTL 70
Query: 78 PFLFVRGDGVI 88
+ +RG+ VI
Sbjct: 71 GLVLLRGEEVI 81
>gi|194899029|ref|XP_001979065.1| GG10522 [Drosophila erecta]
gi|190650768|gb|EDV48023.1| GG10522 [Drosophila erecta]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 88
Query: 69 IVRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VILV PL TA
Sbjct: 89 KPVNKDRFISKMFLRGDSVILVLRNPLATA 118
>gi|340519781|gb|EGR50019.1| predicted protein [Trichoderma reesei QM6a]
Length = 100
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ I VK RE+RG L YD +N++L V+E + DDE E
Sbjct: 16 LDLAKY-MDKEIIVKFNGGREVRGTLKGYDALMNLVLDQVQETLR----DDEGNE----- 65
Query: 73 TRRTVPFLFVRGDGVILVSP 92
+ R++ + VRG ++L+SP
Sbjct: 66 SSRSLGLVVVRGTLLVLISP 85
>gi|115492179|ref|XP_001210717.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114197577|gb|EAU39277.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 132
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E + DDE E
Sbjct: 47 LDLTKY-MDKEVRVKFNGGREVLGLLKGYDQLMNLVLDDVKETMR----DDEGNE----- 96
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 97 TTRSLGLIVARGTLIVLISP 116
>gi|402587026|gb|EJW80962.1| small nuclear ribonucleoprotein Sm D2 [Wuchereria bancrofti]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 3 SEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
++EE A KE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+
Sbjct: 2 TQEELAAKEQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 61
Query: 54 EVVTTVEIDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
E+ T + + ++ + R + +F+RGD VI++
Sbjct: 62 EMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIII 99
>gi|425770497|gb|EKV08967.1| Small nuclear ribonucleoprotein (LSM7), putative [Penicillium
digitatum Pd1]
gi|425771863|gb|EKV10295.1| Small nuclear ribonucleoprotein (LSM7), putative [Penicillium
digitatum PHI26]
Length = 125
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
++E+ + LDL + +D+ + VK RE+ G L YDQ +N++L DV+E +
Sbjct: 30 AQEKPKKENILDLSKY-MDKEVQVKFNGGREVIGTLKGYDQLMNLVLDDVKETM------ 82
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+E TT R++ + RG ++L+SP
Sbjct: 83 ---RDEEGNTTTRSMGLIVARGTLIVLISP 109
>gi|171676173|ref|XP_001903040.1| hypothetical protein [Podospora anserina S mat+]
gi|170936152|emb|CAP60812.1| unnamed protein product [Podospora anserina S mat+]
Length = 153
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+RI VK RE+ G L YD +N++L +V+E V DDE E
Sbjct: 65 LDLKKY-MDKRITVKFNGGREVTGTLKGYDALMNLVLDEVQEAVR----DDEGNE----- 114
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + VRG ++++SP
Sbjct: 115 TTRSLGLVVVRGTLLVVISP 134
>gi|195453024|ref|XP_002073604.1| GK14204 [Drosophila willistoni]
gi|194169689|gb|EDW84590.1| GK14204 [Drosophila willistoni]
Length = 120
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 87
Query: 69 IVRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VILV PL TA
Sbjct: 88 KPVNKDRFISKMFLRGDSVILVLRNPLATA 117
>gi|302766595|ref|XP_002966718.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
gi|300166138|gb|EFJ32745.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
Length = 1249
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V + ++
Sbjct: 1042 PLSVLTSSVKQNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVREMWTEVPKTGKGKKKA 1101
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 1102 KPVNKDRFISKMFLRGDSVIIV 1123
>gi|21357623|ref|NP_649645.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|195109364|ref|XP_001999257.1| GI23171 [Drosophila mojavensis]
gi|195343951|ref|XP_002038554.1| GM10560 [Drosophila sechellia]
gi|195568713|ref|XP_002102358.1| GD19551 [Drosophila simulans]
gi|390178314|ref|XP_001358903.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
gi|33112452|sp|Q9VI10.1|SMD2_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|7298930|gb|AAF54135.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|17861966|gb|AAL39460.1| LD03002p [Drosophila melanogaster]
gi|193915851|gb|EDW14718.1| GI23171 [Drosophila mojavensis]
gi|194133575|gb|EDW55091.1| GM10560 [Drosophila sechellia]
gi|194198285|gb|EDX11861.1| GD19551 [Drosophila simulans]
gi|220952896|gb|ACL88991.1| snRNP2-PA [synthetic construct]
gi|388859402|gb|EAL28046.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
Length = 119
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 86
Query: 69 IVRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VILV PL TA
Sbjct: 87 KPVNKDRFISKMFLRGDSVILVLRNPLATA 116
>gi|388583928|gb|EIM24229.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL +++ S+ + +I V LR++R+L ++ A+D+H NM+L +V+E+ T E ++
Sbjct: 29 PLSVLQQSVKNNTQILVSLRNNRKLLARVKAFDRHSNMVLENVKEMWT--ETPKGKGKQP 86
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 87 INKD-RFISKMFLRGDSVILV 106
>gi|340368003|ref|XP_003382542.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Amphimedon queenslandica]
Length = 119
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L+ S+ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T + ++
Sbjct: 27 PLSLLTQSVKYNTQVLINCRNNRKLLARVKAFDRHFNMVLENVKEMWTETPKTGKGKKKA 86
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 87 RPVNKDRFIAKMFIRGDSVILV 108
>gi|225709580|gb|ACO10636.1| Small nuclear ribonucleoprotein Sm D2 [Caligus rogercresseyi]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
R R + +F+RGD VI+V
Sbjct: 88 KPVNRDRYISKMFLRGDSVIVV 109
>gi|303391220|ref|XP_003073840.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302988|gb|ADM12480.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
Length = 136
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 2 ASEEESAVKEPLDLIRLSLDERI--YVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+E +K PL L+R ++ + I + LR++R++ GK+ AYD+H N+++ + E T
Sbjct: 11 GEKESMEMKGPLSLVRRAMVKMIPVLISLRNNRKVTGKVVAYDRHYNLLVREAREFGTAR 70
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILVS 91
+ + R + +F+RGD VILV+
Sbjct: 71 GRNKGRKKRQGSEFSRKLGNVFIRGDTVILVA 102
>gi|195144664|ref|XP_002013316.1| GL23477 [Drosophila persimilis]
gi|194102259|gb|EDW24302.1| GL23477 [Drosophila persimilis]
Length = 124
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 32 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 91
Query: 69 IVRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VILV PL TA
Sbjct: 92 KPVNKDRFISKMFLRGDSVILVLRNPLATA 121
>gi|50423747|ref|XP_460458.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
gi|49656127|emb|CAG88765.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
Length = 115
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ L++ +++ + + R++ +L K+ A+D+H N+IL +V+E+ T + + ++I
Sbjct: 29 PMSLLQNAVNNGSPVVISCRNNHKLIAKVKAFDRHCNLILENVKELWTE-SVKNNKGKKI 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
T++ R V +F+RGD V++V
Sbjct: 88 KSTSKERFVSKMFLRGDSVVIV 109
>gi|195061660|ref|XP_001996040.1| GH14279 [Drosophila grimshawi]
gi|193891832|gb|EDV90698.1| GH14279 [Drosophila grimshawi]
Length = 128
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 36 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 95
Query: 69 IVRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VILV PL TA
Sbjct: 96 KPVNKDRFISKMFLRGDSVILVLRNPLATA 125
>gi|348676937|gb|EGZ16754.1| hypothetical protein PHYSODRAFT_559644 [Phytophthora sojae]
Length = 123
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+EE K PL ++ S+ + ++ + +R++ +L ++ A+D+H NM+L +V+E+ T V
Sbjct: 28 DEEEFQKGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPK 87
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ + + R V +F+RGD VI+V
Sbjct: 88 SGKGKKAAKPVNKDRFVSKMFLRGDSVIIV 117
>gi|452986071|gb|EME85827.1| hypothetical protein MYCFIDRAFT_181789 [Pseudocercospora fijiensis
CIRAD86]
Length = 125
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ I VK RE+ G L YDQ +N++L +V+E T +E T
Sbjct: 37 LDLAKY-MDKDITVKFNGGREVTGTLKGYDQLMNLVLDNVKET---------TRDEDGNT 86
Query: 73 TRRTVPFLFVRGDGVILVSP 92
+ R + L RG ++L+SP
Sbjct: 87 STRNLGLLVARGTLLVLISP 106
>gi|357622892|gb|EHJ74252.1| small nuclear ribonucleoprotein polypeptide [Danaus plexippus]
Length = 180
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V L+ R G A+D+H+N+ILGD EE +I + + + R +RT+ F
Sbjct: 5 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKSKNTKTVDREEKRTLGF 61
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 62 VLLRGENIV 70
>gi|225704950|gb|ACO08321.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R+++EL G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKELLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD +I+V
Sbjct: 88 KPVNKDRYISKMFLRGDSIIVV 109
>gi|403216466|emb|CCK70963.1| hypothetical protein KNAG_0F03010 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI ++ R + + LR++ ++ ++ A+D+H NM+L +V+E+ T + + T +E
Sbjct: 30 PMSLINEAVISRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKHNKTTNKE- 88
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + LF+RGD VI++
Sbjct: 89 -----RFISKLFLRGDSVIII 104
>gi|239788764|dbj|BAH71046.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ ++ S+ + ++ + R++R+L ++ A+D+H NM+L +V E+ T + + ++
Sbjct: 29 PMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKGKKKA 88
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+R + + +F+RGD VILV
Sbjct: 89 KAVSRDKYISKMFLRGDSVILV 110
>gi|154303271|ref|XP_001552043.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347841641|emb|CCD56213.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Botryotinia
fuckeliana]
Length = 84
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + +I+V ++ D+E G L +D ++NM+L DV +E D ++
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDV------IEFDHQS------ 54
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
++ +P + + G+G+ ++ P
Sbjct: 55 GSQTKLPKILLNGNGIAMLVP 75
>gi|402223834|gb|EJU03898.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 120
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV-----VTTVEIDDETYEEIVRTTR 74
++ R+ V L REL G++ A+D+H+N++L D EE T E D + + +
Sbjct: 15 INYRLRVTLNDGRELTGQMLAFDRHMNLVLADCEEFRKTRSKTKGESDGPAAVSMAQEIK 74
Query: 75 RTVPFLFVRGDGVILVS---PP 93
RT+ + +RG+ ++ +S PP
Sbjct: 75 RTLGLVILRGETIVSISVEGPP 96
>gi|336376883|gb|EGO05218.1| hypothetical protein SERLA73DRAFT_174233 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389815|gb|EGO30958.1| hypothetical protein SERLADRAFT_455383 [Serpula lacrymans var.
lacrymans S7.9]
Length = 85
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL+LI + RI+V ++SDRE G L +D +NM+L DV E TT
Sbjct: 7 PLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYETT 53
>gi|237858781|ref|NP_001153822.1| small nuclear ribonucleoprotein D2-like [Acyrthosiphon pisum]
gi|193606141|ref|XP_001943704.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Acyrthosiphon pisum]
gi|54287930|gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-like protein [Toxoptera
citricida]
gi|239790582|dbj|BAH71844.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790584|dbj|BAH71845.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790586|dbj|BAH71846.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790588|dbj|BAH71847.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790590|dbj|BAH71848.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ ++ S+ + ++ + R++R+L ++ A+D+H NM+L +V E+ T + + ++
Sbjct: 29 PMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKGKKKA 88
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+R + + +F+RGD VILV
Sbjct: 89 KAVSRDKYISKMFLRGDSVILV 110
>gi|225703700|gb|ACO07696.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R V +F+RGD VI+V
Sbjct: 88 KPVNKDRYVSKMFLRGDSVIVV 109
>gi|161899517|ref|XP_001712984.1| mRNA splicing factor [Bigelowiella natans]
gi|75756479|gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans]
Length = 101
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L+ +I + + + G + +D+H N++L DV E+ D + ++ V + +P
Sbjct: 27 LNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVIKEKFIPK 86
Query: 80 LFVRGDGVILVS 91
LF RGD VIL++
Sbjct: 87 LFFRGDAVILIT 98
>gi|119115655|ref|XP_318388.2| AGAP003936-PA [Anopheles gambiae str. PEST]
gi|116119487|gb|EAA13684.2| AGAP003936-PA [Anopheles gambiae str. PEST]
Length = 119
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKGKKKV 86
Query: 69 IVRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 87 KPVNKDRFISKMFLRGDSVILV 108
>gi|195399858|ref|XP_002058536.1| GJ14487 [Drosophila virilis]
gi|194142096|gb|EDW58504.1| GJ14487 [Drosophila virilis]
Length = 125
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 92
Query: 69 IVRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VILV PL TA
Sbjct: 93 KPVNKDRFISKMFLRGDSVILVLRNPLATA 122
>gi|358393465|gb|EHK42866.1| hypothetical protein TRIATDRAFT_300894 [Trichoderma atroviride IMI
206040]
Length = 139
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ I VK RE+RG L YD +N++L +V+E + DD+ E
Sbjct: 53 LDLAKY-MDKAIIVKFNGGREVRGTLKGYDALMNLVLDEVQETLR----DDQGNE----- 102
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + VRG ++L+SP
Sbjct: 103 TTRSLGLVVVRGTLLVLISP 122
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV-RTTRRTVP 78
++ R+ V ++ R+L GK A+D+H+N++LGD EE + E R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGADREDRRTLG 72
Query: 79 FLFVRGDGVI 88
+ +RG+ VI
Sbjct: 73 LVLLRGEEVI 82
>gi|67516971|ref|XP_658371.1| hypothetical protein AN0767.2 [Aspergillus nidulans FGSC A4]
gi|40746253|gb|EAA65409.1| hypothetical protein AN0767.2 [Aspergillus nidulans FGSC A4]
gi|259488955|tpe|CBF88826.1| TPA: small nuclear ribonucleoprotein (LSM7), putative
(AFU_orthologue; AFUA_1G14290) [Aspergillus nidulans
FGSC A4]
Length = 136
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E + DDE E
Sbjct: 51 LDLTKY-MDKEVRVKFNGGREVSGILKGYDQLMNLVLDDVKESMR----DDEGNE----- 100
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R + + RG ++L+SP
Sbjct: 101 TTRALGLIVARGTLIVLISP 120
>gi|290972303|ref|XP_002668893.1| predicted protein [Naegleria gruberi]
gi|290991668|ref|XP_002678457.1| predicted protein [Naegleria gruberi]
gi|284082430|gb|EFC36149.1| predicted protein [Naegleria gruberi]
gi|284092069|gb|EFC45713.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT--TVEIDDETYE 67
PL L+ S+ E+ I + R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 31 PLSLLLESVREQTQILISCRNNRKLLARVKAFDRHCNMVLENVQEMWTEQPKSGKGRKKS 90
Query: 68 EIVRTTRRTVPFLFVRGDGVILV 90
+ + TR T LF+RGD VILV
Sbjct: 91 KPINKTRFTNK-LFLRGDSVILV 112
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R+L GK A+D+H+N++LGD EE + E R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNE-EREDRRTLGL 71
Query: 80 LFVRGDGVI 88
+ +RG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R+L GK A+D+H+N++LGD EE + E R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNE-EREDRRTLGL 71
Query: 80 LFVRGDGVI 88
+ +RG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI-DDETYEEIVRTTRRTVP 78
++ R+ V ++ R+L GK A+D+H+N++LGD EE +T EE R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE--RDERRTLG 70
Query: 79 FLFVRGDGVI 88
+ +RG+ VI
Sbjct: 71 LVLLRGEEVI 80
>gi|406866515|gb|EKD19555.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 106
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE PL +++ ++ ++ + R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 13 ALEEHEFTSGPLSILQTAVRSHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEA 72
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 73 PKTSGGKKGRPVNKDRFISKMFLRGDSVILV 103
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL L+ + RI+V +R DREL G L +D ++NM+L DV E
Sbjct: 20 PLALVDKCVGSRIWVIMRGDRELVGTLRGFDDYVNMVLDDVTE 62
>gi|225704396|gb|ACO08044.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R V +F+RGD VI+V
Sbjct: 88 KPVNKDRYVSKMFLRGDSVIVV 109
>gi|195502267|ref|XP_002098148.1| GE24106 [Drosophila yakuba]
gi|194184249|gb|EDW97860.1| GE24106 [Drosophila yakuba]
Length = 123
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 31 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 90
Query: 69 IVRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VILV PL TA
Sbjct: 91 KPVNKDRFISKMFLRGDSVILVLRNPLATA 120
>gi|452845630|gb|EME47563.1| hypothetical protein DOTSEDRAFT_69495 [Dothistroma septosporum
NZE10]
Length = 133
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ I VK RE+ G L YDQ +N++L +V+E+ DDE T
Sbjct: 45 LDLAKY-MDKEISVKFNGGREVTGTLKGYDQLMNLVLDNVKELTR----DDEG-----NT 94
Query: 73 TRRTVPFLFVRGDGVILVSP 92
+ R + L RG ++L+SP
Sbjct: 95 STRNLGLLVARGTLLVLISP 114
>gi|22203734|gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Azumapecten
farreri]
Length = 119
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L ++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKS 88
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 89 KPVNKDRYISKMFLRGDSVILV 110
>gi|357166207|ref|XP_003580635.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like
[Brachypodium distachyon]
Length = 100
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA +E+A LDL + +D+ + VKL R++ G L YDQ LN++L E V + E
Sbjct: 1 MAGRKETA----LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLD--EAVESERE 53
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DD + T R + + RG V+LVSP
Sbjct: 54 QDDPLK---LSTKTRQLGLIVCRGTAVMLVSP 82
>gi|196006700|ref|XP_002113216.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
gi|190583620|gb|EDV23690.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
Length = 173
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ ++ +++ + R++R++ ++ A+D+H NM+L +V+E+ T
Sbjct: 72 EEELFNTGPLSILTQAVKNSDQVLINCRNNRKILARVKAFDRHCNMVLENVKEMWTETPR 131
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + R + +F+RGD VILV
Sbjct: 132 TGKGRKAKPVNKDRYISKMFLRGDSVILV 160
>gi|226470770|emb|CAX76818.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 87
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPFLFV 82
+ + R++++L ++ A+D+H NM+L +V+E+ T V + ++ + R + LF+
Sbjct: 6 VLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFL 65
Query: 83 RGDGVILV-SPPLRTA 97
RGD VILV PL TA
Sbjct: 66 RGDSVILVLRNPLATA 81
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R+L GK A+D+H+N++LGD EE + E R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINE-EREDRRTLGL 71
Query: 80 LFVRGDGVI 88
+ +RG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|156937769|ref|YP_001435565.1| like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
gi|156566753|gb|ABU82158.1| Like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
Length = 73
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 15/74 (20%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
++ + + VKLR D ++RG+L +D HLN++L D EEV +D+T R +
Sbjct: 12 AIGKIVLVKLR-DGKVRGRLKTFDMHLNIVLEDAEEVR-----EDQT---------RPLG 56
Query: 79 FLFVRGDGVILVSP 92
+ +RGDGV+ VSP
Sbjct: 57 TILIRGDGVVFVSP 70
>gi|67601363|ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gi|54657379|gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium
hominis]
Length = 115
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL LI + RIYV ++ D+E G L +D+++NM+L DV+E
Sbjct: 23 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQE 65
>gi|225712108|gb|ACO11900.1| Probable small nuclear ribonucleoprotein Sm D2 [Lepeophtheirus
salmonis]
Length = 115
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L V+E+ T + + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKA 86
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 87 KPVNKDRYISKMFLRGDSVILV 108
>gi|328856633|gb|EGG05753.1| hypothetical protein MELLADRAFT_87625 [Melampsora larici-populina
98AG31]
Length = 935
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI+V +++ RE GKL +D ++NM+L DV E TT E
Sbjct: 859 PLELIDRCIGSRIWVVMKTGREFTGKLLGFDDYVNMVLEDVTEYETTAE 907
>gi|66363282|ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gi|90109709|pdb|2FWK|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|90109710|pdb|2FWK|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|321159967|pdb|3PGG|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|321159968|pdb|3PGG|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|46229827|gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
Length = 121
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL LI + RIYV ++ D+E G L +D+++NM+L DV+E
Sbjct: 29 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQE 71
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R+L GK A+D+H+N++LGD EE + E R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNE-EREDRRTLGL 71
Query: 80 LFVRGDGVI 88
+ +RG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|218189807|gb|EEC72234.1| hypothetical protein OsI_05349 [Oryza sativa Indica Group]
Length = 96
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPFLFV 82
+ + R++++L G++ A+D+H NM+L +V E+ T V + ++ + + R + +F+
Sbjct: 24 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 83
Query: 83 RGDGVILV 90
RGD VI+V
Sbjct: 84 RGDSVIIV 91
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R+L GK A+D+H+N++LGD EE + E R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINE-EREDRRTLGL 71
Query: 80 LFVRGDGVI 88
+ +RG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|345568451|gb|EGX51345.1| hypothetical protein AOL_s00054g415 [Arthrobotrys oligospora ATCC
24927]
Length = 112
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ ++ ++ + R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 21 EEYEFANGPLSILQTAVRTHNQVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPR 80
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + + R + +F+RGD VILV
Sbjct: 81 NAQGKKGRPVNKDRFISKMFLRGDSVILV 109
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R+L GK A+D+H+N++LGD EE + E R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNE-EREDRRTLGL 71
Query: 80 LFVRGDGVI 88
+ +RG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|134108164|ref|XP_777280.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259967|gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + PL +++ S+ ++ + LR++++L ++ A+D+H NM+L +V+E+ T E
Sbjct: 75 EEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWT--ET 132
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
++ V R + +F+RGD VILV LR A
Sbjct: 133 PKGKGKKPVNKD-RFISKMFLRGDSVILV---LRNA 164
>gi|148298654|ref|NP_001091757.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
gi|87248407|gb|ABD36256.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
Length = 187
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V L+ R G A+D+H+N+ILGD EE + +T + R +RT+ F
Sbjct: 13 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>gi|402217704|gb|EJT97783.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 85
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI+V +++RE G+L +D +NM+L DV E +TT E
Sbjct: 7 PLELIDRCIGSRIWVITKTEREFAGRLLGFDDFVNMVLEDVTEFITTEE 55
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ RI + L+ R G A+D+H+N+ILGD EE T + +E R +R++ F
Sbjct: 5 INYRIRITLQDSRTFIGTFKAFDKHMNLILGDCEEFRRT---KPKNSKEAERDEKRSLGF 61
Query: 80 LFVRGDGVI 88
+ +RG ++
Sbjct: 62 VLLRGQNIV 70
>gi|225561488|gb|EEH09768.1| predicted protein [Ajellomyces capsulatus G186AR]
Length = 174
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +++ + VK RE+ G L YDQ +N++L DV EV+ DDE +
Sbjct: 88 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMR----DDEGNQ----- 137
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 138 TTRSLGLIVARGTLLVLISP 157
>gi|401827885|ref|XP_003888235.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
gi|392999435|gb|AFM99254.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
Length = 128
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+E +K PL L+ ++ + + V LR++R++ GK+ AYD+H N+++ D +E+ T
Sbjct: 13 KEAMEMKGPLSLVHRAMVKMMPVLVSLRNNRKVVGKVIAYDRHYNLLMEDAKELGTMRGK 72
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVS 91
+ + R + +F+RGD VILV+
Sbjct: 73 NRGKKKRQGCGFSRRLGNVFIRGDTVILVA 102
>gi|240274594|gb|EER38110.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325090925|gb|EGC44235.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 169
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +++ + VK RE+ G L YDQ +N++L DV EV+ DDE +
Sbjct: 83 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMR----DDEGNQ----- 132
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 133 TTRSLGLIVARGTLLVLISP 152
>gi|242773724|ref|XP_002478297.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
stipitatus ATCC 10500]
gi|218721916|gb|EED21334.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
stipitatus ATCC 10500]
Length = 144
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 3 SEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+++E KE LDL + +D+ + VK RE+ G L YDQ +N++L DV+E ++
Sbjct: 48 NQQEKPKKENILDLTKY-MDKEVNVKFNGGREVSGILKGYDQLMNLVLDDVKE-----KM 101
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DE+ E T R++ + RG ++L+SP
Sbjct: 102 RDESGNE----TTRSLGLIVARGTLLVLISP 128
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R+L GK A+D+H+N++LGD EE + E R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNE-EREDRRTLGL 71
Query: 80 LFVRGDGVI 88
+ +RG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|417408038|gb|JAA50593.1| Putative small nuclear ribonucleoprotein snrnp sm core protein,
partial [Desmodus rotundus]
Length = 140
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 50 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 109
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 110 KPVNKDRYISKMFLRGDSVIVV 131
>gi|392571577|gb|EIW64749.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 111
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE + PL +++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ T
Sbjct: 19 ALEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWT-- 76
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
E+ ++ V R + +F+RGD VILV
Sbjct: 77 EMPKGKNKKAVNKD-RFISKMFLRGDSVILV 106
>gi|159042090|ref|YP_001541342.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920925|gb|ABW02352.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 79
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 16/92 (17%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MAS V++ L + + + VKLR +RG L YDQH+N++L D EE+
Sbjct: 1 MASRCMKFVQDELSSV---VGSTVLVKLRDGTTIRGTLKNYDQHMNLLLDDTEEI----- 52
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
ID +T + +R + +RGD V+ VSP
Sbjct: 53 IDPKT------SIKR--GMVVIRGDTVLFVSP 76
>gi|19115418|ref|NP_594506.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe 972h-]
gi|12230558|sp|O14036.1|SMD2_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=Complexed with cdc5 protein 9; AltName:
Full=snRNP core protein D2
gi|2414614|emb|CAB16363.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe]
Length = 115
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSLD--ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL +++ ++ +++ + R++++L ++ A+D+H NM+L +V+E+ T + +
Sbjct: 29 PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGK 88
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGDGV+LV
Sbjct: 89 AINKDRFISKMFLRGDGVVLV 109
>gi|154282731|ref|XP_001542161.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410341|gb|EDN05729.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 171
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +++ + VK RE+ G L YDQ +N++L DV EV+ DDE +
Sbjct: 85 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMR----DDEGNQ----- 134
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 135 TTRSLGLIVARGTLLVLISP 154
>gi|26337731|dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSMLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|156053688|ref|XP_001592770.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980]
gi|154703472|gb|EDO03211.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980 UF-70]
Length = 84
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + +I+V ++ D+E G L +D ++NM+L DV +E D ++
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDV------IEFDHQS------ 54
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ +P + + G+G+ ++ P
Sbjct: 55 GNQTKLPKILLNGNGIAMLVP 75
>gi|344302812|gb|EGW33086.1| hypothetical protein SPAPADRAFT_60395 [Spathaspora passalidarum
NRRL Y-27907]
Length = 112
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ L++ +++ I + R++ +L K+ A+D+H N++L +V+E+ T + + ++I
Sbjct: 29 PMSLLQNAVNNNTPIVISCRNNHKLIAKVKAFDRHCNLVLENVKELWTET-VKNNKGKKI 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
T + R V +F+RGD VI++
Sbjct: 88 KSTPKERFVSKMFLRGDSVIII 109
>gi|254566467|ref|XP_002490344.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
gi|238030140|emb|CAY68063.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
Length = 124
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 8/68 (11%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPFLFV 82
+ + LR+D +L K+ A+D+H NM+L +V+E T +I++ T + TR R V +F+
Sbjct: 59 VIISLRNDHKLIAKVKAFDRHCNMVLENVKEFWT--DINNGT-----KVTRERFVSKMFL 111
Query: 83 RGDGVILV 90
RGD V+++
Sbjct: 112 RGDSVVVI 119
>gi|409083153|gb|EKM83510.1| hypothetical protein AGABI1DRAFT_110162 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 84
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+LI + +I+V +++DRE G L +D +NM+L DV E TT E ET
Sbjct: 7 PLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKET 60
>gi|198434899|ref|XP_002127683.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 119
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ + R++R+L ++ A+D+H NM+L +V+E+ T + ++ R R +
Sbjct: 39 NTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKQQPVNRDRFISK 98
Query: 80 LFVRGDGVILV-SPPLRTA 97
+F+RGD VI+V PL +A
Sbjct: 99 MFLRGDSVIIVLKNPLASA 117
>gi|389608761|dbj|BAM17992.1| small ribonucleoprotein particle protein SmB [Papilio xuthus]
Length = 188
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V L+ R G A+D+H+N+ILGD EE + +T + R +RT+ F
Sbjct: 13 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>gi|326426796|gb|EGD72366.1| U6 snRNA-associated Sm-like protein LSm5 [Salpingoeca sp. ATCC
50818]
Length = 87
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++SD+EL G L +D+ +NM+L DV E
Sbjct: 6 PLELIDKCIGSRIHVVMKSDKELVGWLKGFDEFVNMVLTDVTE 48
>gi|167517977|ref|XP_001743329.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778428|gb|EDQ92043.1| predicted protein [Monosiga brevicollis MX1]
Length = 83
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
+A +PL+L+ + RI+V +++D+EL G L +D +NM+L DV+E V T
Sbjct: 2 AAALQPLELVDKCIGSRIHVIMKNDKELVGTLLGFDDFVNMVLEDVKEYVIT 53
>gi|378730773|gb|EHY57232.1| small nuclear ribonucleoprotein [Exophiala dermatitidis NIH/UT8656]
Length = 138
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S E+ + LDL + +D++I VK RE+ G L YDQ +N++L DV+E + D
Sbjct: 42 SHEKPKKENILDLGKY-VDKQITVKFNGGREIVGTLKGYDQLMNLVLDDVKETMR----D 96
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DE E T R + + RG ++L+SP
Sbjct: 97 DEGNE-----TTRPLGLVVARGTLLVLISP 121
>gi|426201795|gb|EKV51718.1| hypothetical protein AGABI2DRAFT_189942 [Agaricus bisporus var.
bisporus H97]
Length = 84
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+LI + +I+V +++DRE G L +D +NM+L DV E TT E ET
Sbjct: 7 PLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKET 60
>gi|399576624|ref|ZP_10770379.1| small nuclear ribonucleoprotein, lsm family [Halogranum salarium
B-1]
gi|399238068|gb|EJN58997.1| small nuclear ribonucleoprotein, lsm family [Halogranum salarium
B-1]
Length = 77
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI-V 70
PLD++ SL+E + V+L+ E G L YDQH+N++L EE ++++DD+ E+ V
Sbjct: 5 PLDVLEASLNEPVTVQLKDGAEYYGTLAGYDQHMNVVL---EE---SLDVDDDALGELDV 58
Query: 71 RTTRRTVPFLFVRGDGVILV 90
T +RGD V+ +
Sbjct: 59 EAVEDTT---IIRGDNVVTI 75
>gi|449017972|dbj|BAM81374.1| similar to Sm protein D2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 10 KEPLDLIRLSLDERI--YVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ P L+ + +R+ V R +++L G L AYD+H N+I+ V E+ + D
Sbjct: 240 RTPFTLLDRCITDRVPCLVSCRHNKKLYGTLRAYDKHFNLIMEHVREIWQESQPDRPP-- 297
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
R + LFVRGDGVI + P +A
Sbjct: 298 ---DLRERFISRLFVRGDGVIFIVRPCVSA 324
>gi|354548281|emb|CCE45017.1| hypothetical protein CPAR2_700210 [Candida parapsilosis]
Length = 97
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL++I S+ +++ + + SD+E RG L +D +NM+L DV VVT + D +T +E+V+
Sbjct: 20 PLEVIDRSIGKKVRILMTSDKEFRGTLIGFDDFVNMVLEDV-TVVTDSDNDADTKDEVVK 78
Query: 72 TTRRTVPFLFVRGDGVILVSPPLRTA 97
+ + G V ++ P + A
Sbjct: 79 K-------MLLNGGQVAMIIPDVVNA 97
>gi|340517487|gb|EGR47731.1| predicted protein [Trichoderma reesei QM6a]
gi|358388581|gb|EHK26174.1| hypothetical protein TRIVIDRAFT_35950 [Trichoderma virens Gv29-8]
Length = 117
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVEIDDETYEE 68
PL +++ ++ ++ + +RS+R+L ++ A+D+H NM+L +V+E+ T T + D
Sbjct: 34 PLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADGKKGR 93
Query: 69 IVRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD VILV
Sbjct: 94 PVNKD-RFISKMFLRGDSVILV 114
>gi|238492871|ref|XP_002377672.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
gi|317156803|ref|XP_003190769.1| U6 snRNA-associated Sm-like protein LSm7 [Aspergillus oryzae RIB40]
gi|220696166|gb|EED52508.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
Length = 133
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
A ++E KE LDL + +D+ + VK RE+ G L +DQ +N++L DV+E +
Sbjct: 36 AQQQEKPKKENILDLSKY-MDKEVRVKFNGGREVVGTLKGFDQLMNLVLDDVKESMR--- 91
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DDE E R++ + RG ++L+SP
Sbjct: 92 -DDEGNE-----NTRSLGLIVARGTIIVLISP 117
>gi|396486327|ref|XP_003842389.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
gi|312218965|emb|CBX98910.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
Length = 117
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ R + + R++R++ ++ A+D+H NM+L + +E+ T T
Sbjct: 26 EEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPR 85
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + + V R + LF+RGD VILV
Sbjct: 86 LSNGSMGRKVNKD-RFISKLFLRGDSVILV 114
>gi|358392303|gb|EHK41707.1| hypothetical protein TRIATDRAFT_30322 [Trichoderma atroviride IMI
206040]
Length = 117
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVEIDDETYEE 68
PL +++ ++ ++ + +RS+R+L ++ A+D+H NM+L +V+E+ T T + D
Sbjct: 34 PLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADGKKGR 93
Query: 69 IVRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD VILV
Sbjct: 94 PVNKD-RFISKMFLRGDSVILV 114
>gi|225704668|gb|ACO08180.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|112143936|gb|ABI13177.1| putative small nuclear ribonucleoprotein d2 [Emiliania huxleyi]
Length = 110
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 24 PLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKKGKGVKKA 83
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 84 KPVNKDRFISKMFLRGDSVIIV 105
>gi|384500116|gb|EIE90607.1| small nuclear ribonucleoprotein Sm D2 [Rhizopus delemar RA 99-880]
Length = 113
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL +++ S+ + +I + R++ +L ++ A+D+H NM+L +V+E+ T + +
Sbjct: 28 PLSVLQQSVKNNNQILISCRNNHKLLARVKAFDRHCNMVLENVKEMWTETPRTGKGSKAK 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R V +F+RGD V+LV
Sbjct: 88 PVNKDRFVSKMFLRGDTVVLV 108
>gi|254582138|ref|XP_002497054.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
gi|238939946|emb|CAR28121.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
Length = 110
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL LI S+ + + + LR++ ++ ++ A+D+H NMIL +V+E+ T E +
Sbjct: 30 PLSLINDSVTTKNPVIISLRNNHKIIARVKAFDRHCNMILENVKELWT------EKKGKR 83
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + LF+RGD VI++
Sbjct: 84 VVNKERFISKLFLRGDSVIVI 104
>gi|209731722|gb|ACI66730.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209733910|gb|ACI67824.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209737798|gb|ACI69768.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209738154|gb|ACI69946.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|225704008|gb|ACO07850.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|225705510|gb|ACO08601.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|303663493|gb|ADM16106.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 118
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|374327713|ref|YP_005085913.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
gi|356642982|gb|AET33661.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
Length = 57
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
Query: 26 VKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGD 85
VKLR E+RG L ++DQH+N++L D EE+ ID Y+ R TV VRG+
Sbjct: 3 VKLRDSHEIRGILRSFDQHVNLLLEDAEEI-----IDGNVYK------RGTV---VVRGE 48
Query: 86 GVILVSP 92
V+ +SP
Sbjct: 49 NVLFISP 55
>gi|156100461|ref|XP_001615958.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium vivax Sal-1]
gi|221059589|ref|XP_002260440.1| small nuclear ribonuclear protein [Plasmodium knowlesi strain H]
gi|148804832|gb|EDL46231.1| U6 snRNA-associated Sm-like protein LSm5, putative [Plasmodium
vivax]
gi|193810513|emb|CAQ41707.1| small nuclear ribonuclear protein, putative [Plasmodium knowlesi
strain H]
gi|389585422|dbj|GAB68153.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium cynomolgi
strain B]
Length = 101
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA+ S PL L+ + +I+V L+ D+E+ GKL +D+++NM+L DV E
Sbjct: 1 MATVSGSETFLPLALMDKCIGSKIWVMLKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|149245030|ref|XP_001527049.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146449443|gb|EDK43699.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 110
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + P+ LI + E I + R++ +L GK+ A+D+H N++L +V+E+ T
Sbjct: 21 EEFEFLHGPMSLIHQAQTENLPIVISCRNNHKLVGKVRAFDRHCNLVLENVKELWTEKVT 80
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + + R R + +F+RGD VI+V
Sbjct: 81 EFGKTKNVPR--ERFISKMFLRGDSVIIV 107
>gi|219113577|ref|XP_002186372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583222|gb|ACI65842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 122
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ + +R++ +L ++ AYD+H+N++L DV+E+ T V + + R V
Sbjct: 33 NTQVLINVRNNHKLLARVKAYDRHMNLLLEDVKEMWTEVSKGGKGRTRGTAVNKDRYVSK 92
Query: 80 LFVRGDGVILV 90
+F+RGD VILV
Sbjct: 93 MFLRGDSVILV 103
>gi|225704522|gb|ACO08107.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|209738048|gb|ACI69893.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221220052|gb|ACM08687.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221221714|gb|ACM09518.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|303664033|gb|ADM16126.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|58263220|ref|XP_569020.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|321249059|ref|XP_003191330.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|57223670|gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457797|gb|ADV19543.1| Pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118541|gb|AFR93315.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 111
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + PL +++ S+ ++ + LR++++L ++ A+D+H NM+L +V+E+ T E
Sbjct: 21 EEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWT--ET 78
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
++ V R + +F+RGD VILV LR A
Sbjct: 79 PKGKGKKPVNKD-RFISKMFLRGDSVILV---LRNA 110
>gi|17544592|ref|NP_502034.1| Protein LSM-7 [Caenorhabditis elegans]
gi|3881724|emb|CAA93428.1| Protein LSM-7 [Caenorhabditis elegans]
Length = 104
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1 MASEEESAVKEPL-DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
M+ +E KE + DL R LD+ I VK + RE G L +DQ LNM+L D E +
Sbjct: 1 MSKDEGKRKKESVVDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLR-- 57
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D +V R + + RG + +VSP
Sbjct: 58 ---DPQNPSVVGDETRQLGLIVARGTAITVVSP 87
>gi|357495277|ref|XP_003617927.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
gi|355519262|gb|AET00886.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
Length = 81
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ + R++++L G++ A+D+H NM+L +V E+ T V + ++ + R +
Sbjct: 6 NTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISK 65
Query: 80 LFVRGDGVILV 90
+F+RGD VI+V
Sbjct: 66 MFLRGDSVIIV 76
>gi|221221306|gb|ACM09314.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|390604110|gb|EIN13501.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 111
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE + PL +++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ T
Sbjct: 19 ALEEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWT-- 76
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
E+ ++ V R + +F+RGD VILV
Sbjct: 77 EVPKGKNKKPVNKD-RFISKMFLRGDSVILV 106
>gi|328350738|emb|CCA37138.1| Probable small nuclear ribonucleoprotein Sm D2 [Komagataella
pastoris CBS 7435]
Length = 108
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 8/68 (11%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPFLFV 82
+ + LR+D +L K+ A+D+H NM+L +V+E T +I++ T + TR R V +F+
Sbjct: 43 VIISLRNDHKLIAKVKAFDRHCNMVLENVKEFWT--DINNGT-----KVTRERFVSKMFL 95
Query: 83 RGDGVILV 90
RGD V+++
Sbjct: 96 RGDSVVVI 103
>gi|452985934|gb|EME85690.1| hypothetical protein MYCFIDRAFT_82569 [Pseudocercospora fijiensis
CIRAD86]
Length = 122
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L++ ++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T + + +
Sbjct: 39 PLSLLQTAVRQHTQVLISCRNNRKLLCRVKAFDRHCNMVLENVKEMWTEIPRLADGKKGR 98
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 99 PVNKDRFISKMFLRGDSVILV 119
>gi|398391274|ref|XP_003849097.1| small nuclear ribonucleoprotein Sm D2 [Zymoseptoria tritici IPO323]
gi|339468973|gb|EGP84073.1| hypothetical protein MYCGRDRAFT_101457 [Zymoseptoria tritici
IPO323]
Length = 122
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L++ ++ ++ + R++R++ ++ A+D+H NM+L +V+E+ T V + +
Sbjct: 39 PLSLLQTAVRNHAQVLISCRNNRKMLARVKAFDRHCNMVLENVKEMWTEVPRLTDGKKGR 98
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 99 PVNKDRFISKMFLRGDSVILV 119
>gi|344232757|gb|EGV64630.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 137
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 12 PLDLIR--LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ L++ ++ + + + R++ +L K+ A+D+H N+IL +V+E+ T +++
Sbjct: 54 PMSLLKEAVANNTPVVISCRNNHKLVAKVKAFDRHCNLILENVKELWTEPVKNNKGKVIK 113
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R V LF+RGD VI+V
Sbjct: 114 VNQKERFVSKLFLRGDSVIVV 134
>gi|409083385|gb|EKM83742.1| hypothetical protein AGABI1DRAFT_124072 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 111
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + PL +++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ T EI
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWT--EI 78
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ V R + +F+RGD VILV
Sbjct: 79 PKGKNKKPVNKD-RFISKMFLRGDSVILV 106
>gi|229366980|gb|ACQ58470.1| Small nuclear ribonucleoprotein Sm D2 [Anoplopoma fimbria]
Length = 118
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIIV 109
>gi|345315929|ref|XP_001520002.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Ornithorhynchus anatinus]
Length = 123
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 92
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 93 KPVNKDRYISKMFLRGDSVIVV 114
>gi|431909174|gb|ELK12764.1| Small nuclear ribonucleoprotein Sm D2 [Pteropus alecto]
Length = 138
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 48 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 107
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 108 KPVNKDRYISKMFLRGDSVIVV 129
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
P DL+ + +++ ++L+++ +RGK+ ++D H+N++L + EE+ E+
Sbjct: 6 PFDLLNRVISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEELDANGEL---------- 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ + + +RG +I VSP
Sbjct: 56 --KAKLGTILLRGGNIIFVSP 74
>gi|91090234|ref|XP_968776.1| PREDICTED: similar to CG1249 CG1249-PA [Tribolium castaneum]
gi|270013456|gb|EFA09904.1| hypothetical protein TcasGA2_TC012054 [Tribolium castaneum]
Length = 118
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H N++L +V+E+ T + + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNIVLENVKEMWTELPRPGKGKKKA 86
Query: 70 VRTTR-RTVPFLFVRGDGVIL-VSPPLRTA 97
+ R + +F+RGD VI+ V PL TA
Sbjct: 87 KPVNKDRFISKMFLRGDAVIIVVRNPLATA 116
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV-RTTRRTVP 78
++ R+ V ++ R+L GK A+D+H+N++LGD EE + E R RRT+
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGGDREDRRTLG 72
Query: 79 FLFVRGDGVI 88
+ +RG+ VI
Sbjct: 73 LVLLRGEEVI 82
>gi|397643091|gb|EJK75649.1| hypothetical protein THAOC_02624 [Thalassiosira oceanica]
Length = 184
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV---TTVEIDDETY--- 66
L+L +L +D+ + VK RELRG L YD+ +N++L D +E + VE Y
Sbjct: 74 LELAKL-IDQNVRVKCLGGRELRGALRGYDELVNLVLDDCDEFIRGWLGVETRISGYSND 132
Query: 67 -EEIVRTTRRTVPFLFVRGDGVILVSP 92
E+I TR+ + + +RG V LVSP
Sbjct: 133 PEKITNKTRK-LGLVVIRGTQVSLVSP 158
>gi|124801422|ref|XP_001349689.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|3845296|gb|AAC71962.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
+ ++ + R++R++ G++ A+D+H N++L V E+ VE+ + ++ R + L
Sbjct: 29 NAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREI--WVEVVKDKKKKKKINKDRYISIL 86
Query: 81 FVRGDGVILV 90
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|255941628|ref|XP_002561583.1| Pc16g12840 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586206|emb|CAP93954.1| Pc16g12840 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 125
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VK RE+ G L YDQ +N++L +V+E + +E T
Sbjct: 40 LDLNKY-MDKEVQVKFSGGREVTGTLKGYDQLMNLVLDEVKETM---------RDEEGNT 89
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 90 TTRSMGLIVARGTLIVLISP 109
>gi|430813655|emb|CCJ29007.1| unnamed protein product [Pneumocystis jirovecii]
Length = 114
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL +++ ++ ++ + R++R+L ++ A+D+H NM+L +V+E+ T + + +
Sbjct: 29 PLSVLQQAVRNHNQVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPRNSKGKKGK 88
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 89 PVNKDRFISKMFLRGDSVILV 109
>gi|308322523|gb|ADO28399.1| small nuclear ribonucleoprotein sm d2 [Ictalurus furcatus]
Length = 123
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 92
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 93 KPVNKDRYISKMFLRGDSVIVV 114
>gi|366992940|ref|XP_003676235.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
gi|342302101|emb|CCC69874.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 12 PLDLIRLSLDERI--YVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI S++ ++ + LR++ ++ ++ A+D+H NM+L +V+E+ T + E
Sbjct: 30 PMSLITDSMNSKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKSTVNRE- 88
Query: 70 VRTTRRTVPFLFVRGDGVI-LVSPPL 94
R + LF+RGD VI +V PL
Sbjct: 89 -----RFISKLFLRGDSVIVIVKAPL 109
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+L+ + RI++ +R+D+E+ G L +D+ +NM+L DV E T + T E +
Sbjct: 7 PLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKLEQIL 66
Query: 72 TTRRTVPFLFVRGDG 86
+ L GDG
Sbjct: 67 LNGNNITMLVPGGDG 81
>gi|363750444|ref|XP_003645439.1| hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889073|gb|AET38622.1| Hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
Length = 108
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 1 MASEEESAVKE-PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+A EE K P+ L+ ++ R + + LR++ ++ ++ ++D+H NM+L +V+E+ T
Sbjct: 17 LAQLEEFEFKHGPMSLLHDAMTSRSPVIISLRNNHKIIARIKSFDRHCNMVLENVKELWT 76
Query: 58 TVEIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
E T +E R + LF+RGD VI+V
Sbjct: 77 EKEGKKLTNKE------RFISKLFLRGDSVIVV 103
>gi|4759158|ref|NP_004588.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Homo sapiens]
gi|58037145|ref|NP_081219.1| small nuclear ribonucleoprotein Sm D2 [Mus musculus]
gi|77735903|ref|NP_001029648.1| small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|157820925|ref|NP_001102869.1| small nuclear ribonucleoprotein Sm D2 [Rattus norvegicus]
gi|302191671|ref|NP_001180521.1| small nuclear ribonucleoprotein Sm D2 [Macaca mulatta]
gi|318085119|ref|NP_001187657.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|343887362|ref|NP_001230582.1| small nuclear ribonucleoprotein Sm D2 [Sus scrofa]
gi|356991224|ref|NP_001239341.1| small nuclear ribonucleoprotein Sm D2 [Canis lupus familiaris]
gi|149722210|ref|XP_001502799.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Equus
caballus]
gi|291414848|ref|XP_002723659.1| PREDICTED: small nuclear ribonucleoprotein D2 [Oryctolagus
cuniculus]
gi|296234130|ref|XP_002762293.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|297705196|ref|XP_002829469.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pongo abelii]
gi|301786280|ref|XP_002928550.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
gi|327286749|ref|XP_003228092.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Anolis
carolinensis]
gi|334328787|ref|XP_001365173.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Monodelphis
domestica]
gi|344269659|ref|XP_003406666.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Loxodonta
africana]
gi|348557650|ref|XP_003464632.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
gi|390465430|ref|XP_003733405.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|397493317|ref|XP_003817554.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Pan
paniscus]
gi|397493319|ref|XP_003817555.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Pan
paniscus]
gi|397493321|ref|XP_003817556.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Pan
paniscus]
gi|397493323|ref|XP_003817557.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
paniscus]
gi|397493325|ref|XP_003817558.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Pan
paniscus]
gi|402905973|ref|XP_003915782.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Papio
anubis]
gi|403267451|ref|XP_003925846.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
gi|403299046|ref|XP_003940303.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Saimiri
boliviensis boliviensis]
gi|410054097|ref|XP_003953576.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982696|ref|XP_003997684.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Felis
catus]
gi|426243035|ref|XP_004015372.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Ovis aries]
gi|426389216|ref|XP_004061020.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Gorilla
gorilla gorilla]
gi|426389218|ref|XP_004061021.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Gorilla
gorilla gorilla]
gi|426389220|ref|XP_004061022.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Gorilla
gorilla gorilla]
gi|441655899|ref|XP_004091080.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655902|ref|XP_004091081.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655911|ref|XP_004091083.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|51338666|sp|P62316.1|SMD2_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|59800293|sp|P62317.1|SMD2_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|109894870|sp|Q3SZF8.1|SMD2_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|6980599|pdb|1B34|B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734043|pdb|3CW1|C Chain C, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734052|pdb|3CW1|P Chain P, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734061|pdb|3CW1|Q Chain Q, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734070|pdb|3CW1|R Chain R, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583603|pdb|3PGW|Y Chain Y, Crystal Structure Of Human U1 Snrnp
gi|315583612|pdb|3PGW|V Chain V, Crystal Structure Of Human U1 Snrnp
gi|332639435|pdb|2Y9A|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639442|pdb|2Y9A|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639449|pdb|2Y9A|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639459|pdb|2Y9B|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639466|pdb|2Y9B|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639473|pdb|2Y9B|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639483|pdb|2Y9C|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639490|pdb|2Y9C|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639497|pdb|2Y9C|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639507|pdb|2Y9D|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639514|pdb|2Y9D|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639521|pdb|2Y9D|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781211|pdb|3S6N|B Chain B, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302197|pdb|4F7U|B Chain B, Macromolecular Machine 6
gi|444302199|pdb|4F7U|D Chain D, Macromolecular Machine 6
gi|453055423|pdb|1VU2|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055431|pdb|1VU2|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055439|pdb|1VU2|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055447|pdb|1VU2|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055455|pdb|1VU2|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055463|pdb|1VU2|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453055475|pdb|1VU2|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|453055479|pdb|1VU3|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055487|pdb|1VU3|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055495|pdb|1VU3|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055503|pdb|1VU3|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055511|pdb|1VU3|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055519|pdb|1VU3|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056011|pdb|4F77|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453056019|pdb|4F77|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453056027|pdb|4F77|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453056035|pdb|4F77|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453056043|pdb|4F77|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453056051|pdb|4F77|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056063|pdb|4F77|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|4558644|gb|AAD22673.1|AC007191_1 SMD2_HUMAN [Homo sapiens]
gi|600748|gb|AAC13776.1| Sm D2 [Homo sapiens]
gi|12653431|gb|AAH00486.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12804955|gb|AAH01930.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12840909|dbj|BAB25006.1| unnamed protein product [Mus musculus]
gi|26353034|dbj|BAC40147.1| unnamed protein product [Mus musculus]
gi|27696661|gb|AAH43014.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|30109280|gb|AAH51208.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|74354236|gb|AAI02878.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Bos taurus]
gi|109734134|gb|AAI16859.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|109734137|gb|AAI16861.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|119577777|gb|EAW57373.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_a [Homo sapiens]
gi|123980686|gb|ABM82172.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|123995513|gb|ABM85358.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|148691165|gb|EDL23112.1| mCG4862 [Mus musculus]
gi|149056801|gb|EDM08232.1| rCG54604 [Rattus norvegicus]
gi|158257256|dbj|BAF84601.1| unnamed protein product [Homo sapiens]
gi|197245986|gb|AAI68781.1| Small nuclear ribonucleoprotein D2 [Rattus norvegicus]
gi|208967434|dbj|BAG73731.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
gi|296477468|tpg|DAA19583.1| TPA: small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|308323619|gb|ADO28945.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|383412347|gb|AFH29387.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|387018126|gb|AFJ51181.1| Small nuclear ribonucleoprotein Sm D2 [Crotalus adamanteus]
gi|387542088|gb|AFJ71671.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|410291960|gb|JAA24580.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
gi|410332637|gb|JAA35265.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
Length = 118
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|410909734|ref|XP_003968345.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Takifugu
rubripes]
Length = 124
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 34 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 93
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 94 KPVNKDRYISKMFLRGDSVIIV 115
>gi|350297191|gb|EGZ78168.1| U6 snRNA-associated Sm-like protein LSm7 [Neurospora tetrasperma
FGSC 2509]
Length = 82
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D+RI VK RE+ G L YD +N++L DV+E V D+E E T R +
Sbjct: 1 MDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVR----DEEGNE-----TTRPLGL 51
Query: 80 LFVRGDGVILVSP 92
+ RG ++++SP
Sbjct: 52 VVARGTLLVVISP 64
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V R L G AYD+H+NM+L D EE TV+ T E+ T +R + F
Sbjct: 13 MNYRMRVTTEDGRMLVGTFMAYDKHMNMVLSDCEE-FRTVKAKKGTDEQ---TQKRALGF 68
Query: 80 LFVRGDGVILVS 91
+ +RG+ V+ ++
Sbjct: 69 ILLRGENVVSMA 80
>gi|395334237|gb|EJF66613.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 111
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE + PL +++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ T
Sbjct: 19 ALEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWT-- 76
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
E+ ++ V R + +F+RGD VILV
Sbjct: 77 ELPKGKNKKPVNKD-RFISKMFLRGDSVILV 106
>gi|281348790|gb|EFB24374.1| hypothetical protein PANDA_018526 [Ailuropoda melanoleuca]
gi|355703667|gb|EHH30158.1| hypothetical protein EGK_10765, partial [Macaca mulatta]
gi|440902304|gb|ELR53111.1| Small nuclear ribonucleoprotein Sm D2, partial [Bos grunniens
mutus]
Length = 117
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 86
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 87 KPVNKDRYISKMFLRGDSVIVV 108
>gi|385303470|gb|EIF47543.1| small nuclear ribonucleoprotein sm d2 [Dekkera bruxellensis
AWRI1499]
Length = 136
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVR 83
I + LR++ +L K+ A+D+H NMIL +V E +D +IVR R V +F+R
Sbjct: 43 ILISLRNNHKLIAKVKAFDRHCNMILENVREFWNETXPNDRK-RKIVR--ERFVLKMFLR 99
Query: 84 GDGVILV 90
GD VI++
Sbjct: 100 GDSVIVI 106
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVP 78
S+ + +K + LRGKL ++DQHLN++L D EE+ + R +
Sbjct: 12 SIGRLVLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIRGDGSV-------------RKLG 58
Query: 79 FLFVRGDGVILVSP 92
+ +RGD V+L+SP
Sbjct: 59 TVVIRGDTVVLISP 72
>gi|432893287|ref|XP_004075904.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oryzias
latipes]
Length = 118
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|303289090|ref|XP_003063833.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454901|gb|EEH52206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V + R++ G+ A+D+H+N++LGD EE T EE R RR + F
Sbjct: 13 INYRMRVTIVDGRQIVGRFMAFDRHMNIVLGDAEEFRKLPPKKGLTEEE--RQVRRVLGF 70
Query: 80 LFVRGDGVI 88
L +RG+ V+
Sbjct: 71 LLLRGEEVV 79
>gi|225714876|gb|ACO13284.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ S+ + ++ + R++++L G++ A+ +H NM+L +V+E+ T V
Sbjct: 20 EEEGFNTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFGRHCNMVLENVKEMWTEVPK 79
Query: 62 DDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
+ ++ + R + +F+RGD VI+V
Sbjct: 80 SGKGKKKSKPVNKDRYISKMFLRGDSVIVV 109
>gi|225705318|gb|ACO08505.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 111
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 18 PLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 77
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 78 KPVNKDRYISKMFLRGDSVIVV 99
>gi|109085944|ref|XP_001108236.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 EPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 27 SPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKK 86
Query: 69 IVRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 87 SKPVNKDRYISKMFLRGDSVIVV 109
>gi|384247364|gb|EIE20851.1| U6 snRNA-associated Sm-like protein LSm7 [Coccomyxa
subellipsoidea C-169]
Length = 99
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S + LDL + +D+ + VKL RE+ G L YDQ LN++L + E +
Sbjct: 2 SRKENALDLAKF-IDKGVRVKLSGGREVEGTLKGYDQLLNLVLDETVEYL-------RDK 53
Query: 67 EEIVRTTRRT--VPFLFVRGDGVILVSPPLRT 96
E+++RTT T + + RG V++VSP T
Sbjct: 54 EDMLRTTNETRHLGLVVCRGTAVMMVSPTAGT 85
>gi|296213417|ref|XP_002753261.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|62955141|ref|NP_001017582.1| small nuclear ribonucleoprotein Sm D2 [Danio rerio]
gi|62204867|gb|AAH93003.1| Si:dkey-113g17.2 [Danio rerio]
gi|169145930|emb|CAQ13816.1| novel protein similar to vertebrate small nuclear ribonucleoprotein
D2 polypeptide 16.5kDa (SNRPD2) [Danio rerio]
gi|225706716|gb|ACO09204.1| Small nuclear ribonucleoprotein Sm D2 [Osmerus mordax]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|52346166|ref|NP_001005128.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|50417589|gb|AAH77664.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
gi|89272067|emb|CAJ81304.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|170285025|gb|AAI61312.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|399217363|emb|CCF74250.1| unnamed protein product [Babesia microti strain RI]
Length = 103
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+++ + PL LI + + ++ + R++R++ ++ A+D+H NMIL D E + TV+
Sbjct: 12 NKDNPTEGPLSLIAECVMDNSQVLINCRNNRKILARVKAFDRHCNMILVDARE-MWTVKS 70
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ V R + +F+RGD VI+V
Sbjct: 71 SGGGKQKFVNKD-RFISKMFLRGDSVIVV 98
>gi|444730749|gb|ELW71123.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 149
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 59 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 118
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 119 KPVNKDRYISKMFLRGDSVIVV 140
>gi|348508217|ref|XP_003441651.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oreochromis
niloticus]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|109510075|ref|XP_001054247.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
gi|109512989|ref|XP_214847.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSIKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RG+ VI+V
Sbjct: 88 KPVNKDRYISKMFLRGNSVIVV 109
>gi|71031308|ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theileria parva strain Muguga]
gi|68352252|gb|EAN33013.1| small nuclear ribonucleoprotein D2, putative [Theileria parva]
Length = 106
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ + E ++ + R++R++ ++ A+D+H NMIL +V E+ T T ++
Sbjct: 23 PLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTNVREMWTVR--GKGTGKKK 80
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ T R + LF+RGD VI+V
Sbjct: 81 LETKDRFLSRLFLRGDSVIVV 101
>gi|291290931|ref|NP_001167498.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
laevis]
gi|57032687|gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus laevis]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|297618799|ref|YP_003706904.1| small nuclear riboprotein-like protein [Methanococcus voltae A3]
gi|297377776|gb|ADI35931.1| Like-Sm ribonucleoprotein core [Methanococcus voltae A3]
Length = 69
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD + S++ I V L+ +E++G+L AYD H+N V +++ +EE
Sbjct: 5 QRPLDALGKSINTNITVFLKDGKEIKGRLKAYDLHMN------------VALENAKFEE- 51
Query: 70 VRTTRRTVPFLFVRGDGVILVS 91
+ P + VRGD V+ VS
Sbjct: 52 -----KEYPMIVVRGDNVLYVS 68
>gi|395334578|gb|EJF66954.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 85
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL+LI + RI+V +++DRE G L +D +NM+L DV E TT
Sbjct: 7 PLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLEDVTEYETT 53
>gi|384249954|gb|EIE23434.1| Sm-E protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI ++ +I+V ++ D+EL+G L +D +NM+L DVEE T E
Sbjct: 18 PSELIDKCINSKIWVIMKGDKELQGTLRGFDVFVNMVLEDVEEYEMTAE 66
>gi|336463585|gb|EGO51825.1| hypothetical protein NEUTE1DRAFT_53111 [Neurospora tetrasperma FGSC
2508]
Length = 144
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+RI VK RE+ G L YD +N++L DV+E V D+E E
Sbjct: 57 LDLKKY-MDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVR----DEEGNE----- 106
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R + + RG ++++SP
Sbjct: 107 TTRPLGLVVARGTLLVVISP 126
>gi|225704758|gb|ACO08225.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R V +F RGD VI+V
Sbjct: 88 KPVNKDRYVSKMFQRGDSVIVV 109
>gi|60834798|gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
Length = 119
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|389739270|gb|EIM80464.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 111
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + PL +++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ T EI
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWT--EI 78
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ V R + +F+RGD VIL+
Sbjct: 79 PKGKNKKPVNKD-RFISKMFLRGDSVILI 106
>gi|328867188|gb|EGG15571.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 110
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + +I + +R++++L ++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 22 PLSILMESVKNNTQILINVRNNKKLLARVRAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 81
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 82 KPVNKDRFISKMFLRGDSVILV 103
>gi|327351953|gb|EGE80810.1| U6 snRNA binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 165
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +++ + VK RE+ G L YDQ +N++L DV+E + DDE +
Sbjct: 79 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMR----DDEGNQ----- 128
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 129 TTRSLGLIVARGTLLVLISP 148
>gi|239612791|gb|EEQ89778.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 164
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +++ + VK RE+ G L YDQ +N++L DV+E + DDE +
Sbjct: 78 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMR----DDEGNQ----- 127
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 128 TTRSLGLIVARGTLLVLISP 147
>gi|261194282|ref|XP_002623546.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239588560|gb|EEQ71203.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
Length = 160
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +++ + VK RE+ G L YDQ +N++L DV+E + DDE +
Sbjct: 74 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMR----DDEGNQ----- 123
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 124 TTRSLGLIVARGTLLVLISP 143
>gi|225715792|gb|ACO13742.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|156093647|ref|XP_001612862.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium vivax Sal-1]
gi|221052951|ref|XP_002257850.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|148801736|gb|EDL43135.1| small nuclear ribonucleoprotein Sm D2, putative [Plasmodium
vivax]
gi|193807682|emb|CAQ38386.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
gi|390371035|dbj|GAB64916.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium cynomolgi
strain B]
Length = 101
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
+ ++ + R++R+L ++ A+D+H N++L +V E+ VE+ + ++ R + L
Sbjct: 29 NAQVLINCRNNRKLLARVKAFDRHCNLLLTEVREI--WVEVVKDKKKKKKINKDRYISIL 86
Query: 81 FVRGDGVILV 90
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
A +P+D+++ +L + + ++ +RE G L YD ++N++L + E++
Sbjct: 6 ANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIING--------- 56
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
+ + VRGD VI VSP
Sbjct: 57 ----ENKGVFDRILVRGDNVIFVSP 77
>gi|449302285|gb|EMC98294.1| hypothetical protein BAUCODRAFT_146847 [Baudoinia compniacensis
UAMH 10762]
Length = 119
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVEIDDETYEE 68
PL L++ ++ ++ + R++R+L ++ A+D+H NM+L +V+E+ T T + D
Sbjct: 36 PLSLLQTAVRNHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLTDGKRGR 95
Query: 69 IVRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD VILV
Sbjct: 96 PVNKD-RFISKMFLRGDSVILV 116
>gi|237649049|ref|NP_808210.2| small nuclear ribonucleoprotein Sm D2 isoform 2 [Homo sapiens]
gi|332257074|ref|XP_003277641.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4
[Nomascus leucogenys]
gi|332257076|ref|XP_003277642.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5
[Nomascus leucogenys]
gi|332856260|ref|XP_001166252.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
troglodytes]
gi|395854166|ref|XP_003799569.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Otolemur
garnettii]
gi|397493327|ref|XP_003817559.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Pan
paniscus]
gi|402905975|ref|XP_003915783.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Papio
anubis]
gi|410054100|ref|XP_003953577.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan
troglodytes]
gi|410982698|ref|XP_003997685.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Felis
catus]
gi|426389224|ref|XP_004061024.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5
[Gorilla gorilla gorilla]
gi|426389226|ref|XP_004061025.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6
[Gorilla gorilla gorilla]
gi|441655907|ref|XP_004091082.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|119577778|gb|EAW57374.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_b [Homo sapiens]
gi|351697916|gb|EHB00835.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
gi|432101631|gb|ELK29680.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 108
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 77
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 78 KPVNKDRYISKMFLRGDSVIVV 99
>gi|242077336|ref|XP_002448604.1| hypothetical protein SORBIDRAFT_06g029950 [Sorghum bicolor]
gi|241939787|gb|EES12932.1| hypothetical protein SORBIDRAFT_06g029950 [Sorghum bicolor]
Length = 98
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA +E+A LDL + +D+ + VKL R++ G L YDQ LN++L +E V +
Sbjct: 1 MAGRKETA----LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAVESER 52
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D+ + +T R + + RG V+LVSP
Sbjct: 53 EQDDPLKLSGKT--RQLGLIVCRGTAVMLVSP 82
>gi|156058484|ref|XP_001595165.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980]
gi|154701041|gb|EDO00780.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980
UF-70]
gi|347839440|emb|CCD54012.1| similar to small nuclear ribonucleoprotein sm d2 [Botryotinia
fuckeliana]
Length = 118
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL L++ ++ ++ + R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 27 EEHEFTSGPLSLLQAAVRSHGQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 87 LSGGGKGRPVNKDRFISKMFLRGDSVILV 115
>gi|393228545|gb|EJD36188.1| U6 snRNA-associated Sm-like protein LSm7 [Auricularia delicata
TFB-10046 SS5]
Length = 116
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +ERI VK RE+ G L YDQ LN++L DVEEV+ E RT
Sbjct: 34 LDLSKYQ-NERIRVKFTGGREVTGILKGYDQLLNLVLDDVEEVIQEPE---------PRT 83
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R + +RG V L+SP
Sbjct: 84 --RKLGLAVLRGPTVTLLSP 101
>gi|146421306|ref|XP_001486603.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
gi|146390018|gb|EDK38176.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
Length = 112
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ L++ +LD + + R++ ++ ++ A+D+H NM+L +V+E+ T + +
Sbjct: 29 PMSLLQNALDNNTPVVISCRNNHKMVARVKAFDRHCNMVLENVKELWTESVKNGKGKVVN 88
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ R V LF+RGD V++V
Sbjct: 89 SVSKERFVSKLFLRGDSVVIV 109
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
A +P+D+++ +L + + ++ +RE G L YD ++N++L + E++
Sbjct: 10 ANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIING--------- 60
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
+ + VRGD VI VSP
Sbjct: 61 ----ENKGVFDRILVRGDNVIFVSP 81
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V L R + G+ A+D+H+N++LGD EE T EE R RR +
Sbjct: 13 INYRMRVTLIDSRHIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEEE--RDQRRVLGL 70
Query: 80 LFVRGDGVI 88
+ +RGD VI
Sbjct: 71 VLLRGDEVI 79
>gi|50290221|ref|XP_447542.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526852|emb|CAG60479.1| unnamed protein product [Candida glabrata]
Length = 90
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
PL++I ++D+++++ L+S+RE GKL +D+ +N+IL D E T + +D E+V
Sbjct: 8 PLEVIDKTIDQQVHIILQSNREFSGKLVGFDEFVNVILEDPIEYTTEITANDGLKSEVV 66
>gi|340975579|gb|EGS22694.1| hypothetical protein CTHT_0011670 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 148
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
++E KE + ++ +D+RI VK RE G L YD +N++L DVEE++ D
Sbjct: 52 QDKERPKKENILDLKKYMDKRITVKFNGGREATGVLKGYDALMNLVLDDVEELLR----D 107
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DE E R + + VRG ++ VSP
Sbjct: 108 DEGNE-----MTRPLGLVVVRGTLLVFVSP 132
>gi|400600870|gb|EJP68538.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 118
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R++R+L ++ A+D+H NM+L +V+E+ T T
Sbjct: 27 EEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ D V R + +F+RGD VILV
Sbjct: 87 LADGKKGRPVNKD-RFISKMFLRGDSVILV 115
>gi|169779295|ref|XP_001824112.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus oryzae RIB40]
gi|238499931|ref|XP_002381200.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|83772851|dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692953|gb|EED49299.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|391873159|gb|EIT82233.1| small nuclear ribonucleoprotein (snRNP) Sm core protein
[Aspergillus oryzae 3.042]
Length = 115
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL L++ + ++ + RS+R L ++ A+D+H NM+L +V+E+ T E
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLIACRSNRRLLARVKAFDRHCNMVLENVKEMWT--EK 84
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R + +F+RGD VILV
Sbjct: 85 PKGGKGKGVNKD-RFISKMFLRGDSVILV 112
>gi|393247820|gb|EJD55327.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 111
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + PL +++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ T E+
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWT--EV 78
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ V R + +F+RGD V+LV
Sbjct: 79 PKGKNKKPVNKD-RFISKMFLRGDSVVLV 106
>gi|358058374|dbj|GAA95893.1| hypothetical protein E5Q_02551 [Mixia osmundae IAM 14324]
Length = 197
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
D+RI VK RE+ G L DQ +NM+L DV+E+V D +T + R++
Sbjct: 114 DQRIRVKFLGGREVTGVLKGSDQLMNMVLDDVQELVR----DPDTLAPLDPAQYRSLGLT 169
Query: 81 FVRGDGVILVSP 92
+RG +++++P
Sbjct: 170 VIRGTAIVVINP 181
>gi|241951640|ref|XP_002418542.1| small nuclear ribonucleoprotein sm d2, putative; small nuclear
riboucleoprotein (snrnp) core protein d2, putative
[Candida dubliniensis CD36]
gi|223641881|emb|CAX43844.1| small nuclear ribonucleoprotein sm d2, putative [Candida
dubliniensis CD36]
Length = 112
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
D I + R++ +L GK+ A+D+H N++L +V+E+ T +++ + + R + L
Sbjct: 40 DTPIIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTEDIKNNKGKKIKSISKERFISKL 99
Query: 81 FVRGDGVILV 90
F+RGD VI++
Sbjct: 100 FLRGDSVIII 109
>gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM
1728]
gi|11387090|sp|P57670.1|RUXX_THEAC RecName: Full=Putative snRNP Sm-like protein
gi|10640586|emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
Length = 83
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
+P+D+++ +L + + ++ +RE G L YD ++N++L + E++ + Y+ +
Sbjct: 9 KPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGE--NKGVYDRV- 65
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
VRGD VI VSP
Sbjct: 66 ----------LVRGDNVIFVSP 77
>gi|449296389|gb|EMC92409.1| hypothetical protein BAUCODRAFT_287708 [Baudoinia compniacensis
UAMH 10762]
Length = 133
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 3 SEEESAVKEPLDLIRLS--LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
S+ +SA ++ +++ L+ +D+ I VK RE+ G L YDQ +N++L +V+E+
Sbjct: 33 SQAQSADRKKENILDLTKYMDKDITVKFNGGREVTGLLKGYDQLMNLVLDNVKEITR--- 89
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
DDE + R++ L RG ++L+SP
Sbjct: 90 -DDEG-----NLSTRSLGLLVARGTLLVLISP 115
>gi|222619939|gb|EEE56071.1| hypothetical protein OsJ_04893 [Oryza sativa Japonica Group]
Length = 104
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPFL 80
++ + +++++L G++ A+D H NM+L +V E+ T V + ++ + + R + +
Sbjct: 30 NQVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKM 89
Query: 81 FVRGDGVILV 90
F+RGD VI+V
Sbjct: 90 FLRGDSVIIV 99
>gi|295664210|ref|XP_002792657.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278771|gb|EEH34337.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 180
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +++ + VK RE+ G L YDQ +N++L DV+EV+ DDE +
Sbjct: 94 LDLAKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKEVMR----DDEDNQ----- 143
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R + + RG ++L+SP
Sbjct: 144 TTRPLGLVVARGTLLVLISP 163
>gi|225677618|gb|EEH15902.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 179
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +++ + VK RE+ G L YDQ +N++L DV+EV+ DDE +
Sbjct: 93 LDLAKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKEVMR----DDEDNQ----- 142
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R + + RG ++L+SP
Sbjct: 143 TTRPLGLVVARGTLLVLISP 162
>gi|393218655|gb|EJD04143.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 112
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE+ + PL ++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ VE+
Sbjct: 22 EEQEISQGPLSVLLQAVRNHHQVLISLRNNKKLLARVKAFDRHTNMVLENVKEM--WVEV 79
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ V R + +F+RGD VIL+
Sbjct: 80 PKGKNKKPVNKD-RFISKMFLRGDSVILI 107
>gi|358392771|gb|EHK42175.1| hypothetical protein TRIATDRAFT_312688 [Trichoderma atroviride
IMI 206040]
Length = 216
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE--------VVTTVEIDDETYEEIVR 71
++ R+ V L+ R+L G++ AYD+H+N++L D EE + +V+
Sbjct: 13 INYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRIKRKQTKAAAPSGSSAGQTVVQ 72
Query: 72 TTRRTVPFLFVRGDGVILV---SPP 93
+RT+ + VRG +I + SPP
Sbjct: 73 EEKRTLGLVIVRGAHIISLTVESPP 97
>gi|45201373|ref|NP_986943.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|44986307|gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|374110193|gb|AEY99098.1| FAGR277Wp [Ashbya gossypii FDAG1]
Length = 108
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI+ ++ R + + LR++ ++ ++ ++D+H NM+L +V+E+ + E + +E
Sbjct: 29 PMSLIQEAMTARTPVIISLRNNHKIIARVKSFDRHCNMVLENVKEIWSEREGKKISNKE- 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + LF+RGD VI+V
Sbjct: 88 -----RFISKLFLRGDSVIVV 103
>gi|348669540|gb|EGZ09362.1| hypothetical protein PHYSODRAFT_304932 [Phytophthora sojae]
Length = 217
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVEIDDETYEEIVRTTRRTVP 78
++ R+ V L+ R L G A+D+H+N++LGD EE T ++ EE R +R +
Sbjct: 13 INYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTLKAKVKSAVSEE--RVEKRHLG 70
Query: 79 FLFVRGDGVILVS---PPL 94
+ +RG+ V+ ++ PPL
Sbjct: 71 LVLLRGESVVSLTVEGPPL 89
>gi|426389222|ref|XP_004061023.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Gorilla
gorilla gorilla]
Length = 136
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 46 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 105
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 106 KPVNKDRYISKMFLRGDSVIVV 127
>gi|213404126|ref|XP_002172835.1| U6 snRNP-associated protein Lsm7 [Schizosaccharomyces japonicus
yFS275]
gi|212000882|gb|EEB06542.1| U6 snRNP-associated protein Lsm7 [Schizosaccharomyces japonicus
yFS275]
Length = 112
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL R D+RI KL R++ G L YDQ +N++L DVEE + E D +E
Sbjct: 26 LDLSRYQ-DQRIQAKLTGGRQISGVLKGYDQLMNLVLDDVEENLRDPE-DGRVLDET--- 80
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R + + VRG ++L++P
Sbjct: 81 --RKLGLVVVRGTTLVLLAP 98
>gi|170084079|ref|XP_001873263.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650815|gb|EDR15055.1| predicted protein [Laccaria bicolor S238N-H82]
gi|336377064|gb|EGO05399.1| hypothetical protein SERLA73DRAFT_174539 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390107|gb|EGO31250.1| hypothetical protein SERLADRAFT_456135 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + PL +++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ T E+
Sbjct: 21 EEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWT--EV 78
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ V R + +F+RGD VIL+
Sbjct: 79 PKGKNKKPVNKD-RFISKMFLRGDSVILI 106
>gi|402467605|gb|EJW02881.1| hypothetical protein EDEG_02705 [Edhazardia aedis USNM 41457]
Length = 68
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 20/83 (24%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
+K+P +L+ E I ++LR + ++G LHAYD+H+N+I+ +V+
Sbjct: 1 MKDPSELLSTYTQEEIMIRLRDGQLIKGNLHAYDEHMNVIMSNVKGCEN----------- 49
Query: 69 IVRTTRRTVPFLFVRGDGVILVS 91
LFVRG+ + L+
Sbjct: 50 ---------QLLFVRGESITLIG 63
>gi|323507716|emb|CBQ67587.1| probable U6 snRNA-associated Sm-like protein LSm5 [Sporisorium
reilianum SRZ2]
Length = 103
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL+LI + I+V +++DRE G L +D ++NM+L DV E TT
Sbjct: 24 PLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETT 70
>gi|315042035|ref|XP_003170394.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
gi|311345428|gb|EFR04631.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
Length = 135
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLS--LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 47 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 104
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R + +F+RGD VILV
Sbjct: 105 PKGGKGKGVNKD-RFISKMFLRGDSVILV 132
>gi|301093096|ref|XP_002997397.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
gi|262110795|gb|EEY68847.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
Length = 216
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVEIDDETYEEIVRTTRRTVP 78
++ R+ V L+ R L G A+D+H+N++LGD EE T ++ EE R +R +
Sbjct: 13 INYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTLKAKVKSAVSEE--RVEKRHLG 70
Query: 79 FLFVRGDGVILVS---PPL 94
+ +RG+ V+ ++ PPL
Sbjct: 71 LVLLRGESVVSLTVEGPPL 89
>gi|256073118|ref|XP_002572879.1| hypothetical protein [Schistosoma mansoni]
gi|360045255|emb|CCD82803.1| hypothetical protein Smp_129760 [Schistosoma mansoni]
Length = 87
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+L+ + +I++ +++D+E+ G L +D ++NM+L DV E +E +
Sbjct: 10 PLELVDKCIGSKIHIIMKNDKEMVGTLLGFDSYVNMVLADVTE-----------FEFTAQ 58
Query: 72 TTRRT-VPFLFVRGDGVILVSP 92
R T +P + + G ++++ P
Sbjct: 59 GKRITKLPHILLNGSNIVMMVP 80
>gi|428173912|gb|EKX42811.1| hypothetical protein GUITHDRAFT_153446 [Guillardia theta
CCMP2712]
Length = 99
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L+ S+ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T + +
Sbjct: 13 PLSLLADSVRKNCQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPRTGKGKAKS 72
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 73 KPVNKDRFISKMFLRGDSVIMV 94
>gi|392597490|gb|EIW86812.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 84
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + +I+V ++ DRE G L +D +NM+L DV E T E
Sbjct: 7 PLELIDRCIGSKIWVVMKGDREFSGTLLGFDDFVNMVLEDVTEFEITAE 55
>gi|238882386|gb|EEQ46024.1| small nuclear ribonucleoprotein Sm D2 [Candida albicans WO-1]
Length = 112
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
D I + R++ +L GK+ A+D+H N++L +V+E+ T +++ + + R + +
Sbjct: 40 DSPIIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTEDIKNNKGKKIKSISKERFISKM 99
Query: 81 FVRGDGVILV 90
F+RGD VI++
Sbjct: 100 FLRGDSVIII 109
>gi|226295357|gb|EEH50777.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb18]
Length = 114
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 26 EEHELTSGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 83
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R V +F+RGD VILV
Sbjct: 84 PKGGKGKGVNKD-RFVSKMFLRGDSVILV 111
>gi|449551015|gb|EMD41979.1| hypothetical protein CERSUDRAFT_110522 [Ceriporiopsis
subvermispora B]
Length = 85
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL+LI + RI+V ++SDRE G L +D +NM+L DV E T
Sbjct: 7 PLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYENT 53
>gi|295670567|ref|XP_002795831.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225677515|gb|EEH15799.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb03]
gi|226284916|gb|EEH40482.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 114
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 26 EEHELTSGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 83
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R V +F+RGD VILV
Sbjct: 84 PKGGKGKGVNKD-RFVSKMFLRGDSVILV 111
>gi|403288352|ref|XP_003935370.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403288354|ref|XP_003935371.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 145
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+++H NM+L +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFNRHCNMVLENVKETWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 18 LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
L ++ RI V ++ R+L GK A+D+H+N++LGD EE+ ++ EE
Sbjct: 11 LYINWRIRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKSQEE 61
>gi|328768266|gb|EGF78313.1| hypothetical protein BATDEDRAFT_90808 [Batrachochytrium
dendrobatidis JAM81]
Length = 115
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ ++ ++ V R++R+L ++ A+D+H NM+L +V+E+ T + ++
Sbjct: 29 PLSILTQAVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKA 88
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 89 KPVNKDRFISKMFLRGDSVILV 110
>gi|298710498|emb|CBJ25562.1| small nuclear ribonucleoprotein D2-like protein [Ectocarpus
siliculosus]
Length = 82
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ + +R++ +L ++ A+D+H NM+L DV+E+ T + ++ + R V
Sbjct: 7 NTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSK 66
Query: 80 LFVRGDGVILV 90
+F+RGD V+LV
Sbjct: 67 MFLRGDSVVLV 77
>gi|325091149|gb|EGC44459.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus H88]
Length = 187
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 99 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 156
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R V +F+RGD VILV
Sbjct: 157 PKGGKGKGVNKD-RFVSKMFLRGDSVILV 184
>gi|380491285|emb|CCF35428.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 144
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D++I VK RE+ G L YD +N++L +V+EV+ D+E E
Sbjct: 58 LDLSKY-MDKQITVKFNGGREVTGTLKGYDALMNLVLDEVQEVMR----DEEGNE----- 107
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++LVSP
Sbjct: 108 TTRSLGLVVARGTLLVLVSP 127
>gi|403221959|dbj|BAM40091.1| small nuclear ribonucleoprotein associated protein b [Theileria
orientalis strain Shintoku]
Length = 153
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L + V L+ +R+ G L A+D+H+N++L D EE T+ D E +RT+ F
Sbjct: 12 LQYNVRVTLKDNRKFVGTLVAFDRHMNLVLSDCEEFRMTLGKDKNRTE-----IKRTLGF 66
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 67 VLLRGENIV 75
>gi|115395198|ref|XP_001213486.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193055|gb|EAU34755.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 83
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + RI+V +++D+E G L +D ++NM+L DV E +
Sbjct: 7 PLELIDKCVGSRIWVIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDYS------------- 53
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
T+ +P + + G+ V ++ P
Sbjct: 54 GTQEKLPKILLNGNNVCMLIP 74
>gi|310794009|gb|EFQ29470.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 143
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D++I VK RE+ G L YD +N++L +V+EV+ D+E E
Sbjct: 57 LDLSKY-MDKQITVKFNGGREVTGTLKGYDALMNLVLDEVQEVMR----DEEGNE----- 106
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++LVSP
Sbjct: 107 TTRSLGLVVARGTLLVLVSP 126
>gi|393218481|gb|EJD03969.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 85
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V +++DRE G L +D +NM+L DV E
Sbjct: 7 PLELIDTCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTE 49
>gi|302909473|ref|XP_003050081.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731018|gb|EEU44368.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 117
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSLDERIYV--KLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ I V +R++R+L ++ A+D+H NM+L +V+E+ T T
Sbjct: 26 EEHEFSAGPLSILQTAVRSHIQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 85
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + V R + +F+RGD VILV
Sbjct: 86 LANGKKGRPVNKD-RFISKMFLRGDSVILV 114
>gi|388499482|gb|AFK37807.1| unknown [Lotus japonicus]
Length = 99
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VKL R++ G L YDQ LN++L +E V + D+ + +T
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAVEFLRDPDDPLKTTAQT 64
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + RG V+LVSP
Sbjct: 65 --RSLGLIVCRGTAVMLVSP 82
>gi|392597247|gb|EIW86569.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 111
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE + PL +++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ T E+
Sbjct: 21 EEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWT--EV 78
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
++ V R + +F+RGD VIL+
Sbjct: 79 PKGKNKKPVNKD-RFISKMFLRGDSVILI 106
>gi|308491262|ref|XP_003107822.1| CRE-LSM-7 protein [Caenorhabditis remanei]
gi|308249769|gb|EFO93721.1| CRE-LSM-7 protein [Caenorhabditis remanei]
Length = 103
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1 MASEEESAVKEPL-DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
M+ ++ KE + DL R LD+ I VK + RE G L +DQ LNM+L D E +
Sbjct: 1 MSKDDGKRKKESVVDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLR-- 57
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D +V R + + RG + +VSP
Sbjct: 58 ---DPQNPSVVGDETRPLGLIVARGTAITVVSP 87
>gi|213405485|ref|XP_002173514.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
gi|212001561|gb|EEB07221.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSLD--ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL +++ ++ +++ + R++++L ++ A+D+H NM+L +V+E+ T +
Sbjct: 29 PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTERRKTSSGKKGK 88
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGDGV+LV
Sbjct: 89 PINRDRFISKMFLRGDGVVLV 109
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 18 LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
L ++ R+ V ++ R+L GK A+D+H+N++LGD EE+ +T EE
Sbjct: 11 LYINWRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKTQEE 61
>gi|448729283|ref|ZP_21711600.1| small nuclear ribonucleoprotein, lsm family [Halococcus
saccharolyticus DSM 5350]
gi|445795230|gb|EMA45759.1| small nuclear ribonucleoprotein, lsm family [Halococcus
saccharolyticus DSM 5350]
Length = 79
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL----GDVEEVVTTVEIDDETYE 67
PLD++ +L + + V+L+ G L YDQH+N++L GD E T E+ ET E
Sbjct: 6 PLDVLEATLGDSVAVRLKDGEIYTGSLAGYDQHMNVVLEPASGDAEP-PTPGEVGVETVE 64
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
+RGD V+ ++P
Sbjct: 65 STT----------IIRGDNVVTITP 79
>gi|154283173|ref|XP_001542382.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
gi|150410562|gb|EDN05950.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
Length = 103
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 15 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 72
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R V +F+RGD VILV
Sbjct: 73 PKGGKGKGVNKD-RFVSKMFLRGDSVILV 100
>gi|126178181|ref|YP_001046146.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125860975|gb|ABN56164.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 75
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 12 PLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
PLD++ L+ + + + L+ RE+RG L YD H+N++L EE E+D
Sbjct: 5 PLDILDQVLNRQPVIISLKGGREIRGILQGYDVHMNLVLDKAEE-----EVDGAA----- 54
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
+ + L VRGD VI ++P
Sbjct: 55 ----QKLGTLIVRGDNVIYITP 72
>gi|358385010|gb|EHK22607.1| hypothetical protein TRIVIDRAFT_60544 [Trichoderma virens Gv29-8]
Length = 132
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
A++ E KE LDL + +D+ I VK RE+RG L YD +N++L +V+E +
Sbjct: 34 AAQGERPKKENILDLAKY-MDKEITVKFNGGREVRGTLKGYDALMNLVLDEVQETLR--- 89
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D+E E + R + + VRG ++L+SP
Sbjct: 90 -DEEGNE-----SSRPLGLVVVRGTLLVLISP 115
>gi|301098772|ref|XP_002898478.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
gi|262104903|gb|EEY62955.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
Length = 106
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 1 MASEEESAV---KEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA+ S K+P LDL + +D+ + VK RE+ G L YDQ +N++L D E
Sbjct: 1 MAANGASGGGSRKDPILDLAKY-IDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDCVEF- 58
Query: 57 TTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
+ D + E + R V + RG V+LVSP TA
Sbjct: 59 ----LRDPSDEYRITDETRKVGLVVCRGTSVMLVSPVDGTA 95
>gi|261189633|ref|XP_002621227.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|225561709|gb|EEH09989.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus
G186AR]
gi|239591463|gb|EEQ74044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|239613006|gb|EEQ89993.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ER-3]
gi|240275314|gb|EER38828.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 114
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 26 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 83
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R V +F+RGD VILV
Sbjct: 84 PKGGKGKGVNKD-RFVSKMFLRGDSVILV 111
>gi|71021395|ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|46101003|gb|EAK86236.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|343426204|emb|CBQ69735.1| probable small nuclear ribonucleoprotein chain D2 [Sporisorium
reilianum SRZ2]
gi|443900125|dbj|GAC77452.1| 17 beta-hydroxysteroid dehydrogenase type 3 [Pseudozyma antarctica
T-34]
Length = 111
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL +++ S+ +I + LR++++L ++ A+D+H NM+L +V+E+ T E+ ++
Sbjct: 29 PLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWT--EVPKGKGKKP 86
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD V+LV
Sbjct: 87 VNKD-RFISKMFLRGDSVVLV 106
>gi|212531689|ref|XP_002146001.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
marneffei ATCC 18224]
gi|210071365|gb|EEA25454.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
marneffei ATCC 18224]
Length = 150
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E ++ DE+ +E
Sbjct: 65 LDLTKY-MDKEVIVKFNGGREVSGILKGYDQLMNLVLDDVKE-----KMRDESGKEAT-- 116
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + RG ++L+SP
Sbjct: 117 --RSLGLIVARGTLLVLISP 134
>gi|159480556|ref|XP_001698348.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
gi|158282088|gb|EDP07841.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
Length = 110
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++ +L ++ A+D+H NMIL +V+E+ T + + +
Sbjct: 24 PLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKGQKAS 83
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R V +F+RGD VI+V
Sbjct: 84 RPVNKDRFVSKMFLRGDSVIMV 105
>gi|154344332|ref|XP_001568110.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065444|emb|CAM40878.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P L+ S+ E R++++ R+ + L + A+D+H N++L V+E+ T
Sbjct: 28 PFSLLDTSMKENKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI---------TESHG 78
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+RT+ LF+RG+ V+ +
Sbjct: 79 SEQKQRTIENLFLRGESVVFI 99
>gi|388857230|emb|CCF49243.1| probable small nuclear ribonucleoprotein chain D2 [Ustilago hordei]
Length = 111
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL +++ S+ +I + LR++++L ++ A+D+H NM+L +V+E+ T E+ ++
Sbjct: 29 PLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWT--EVPKGKGKKP 86
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + +F+RGD V+LV
Sbjct: 87 VNKD-RFISKMFLRGDSVVLV 106
>gi|124809480|ref|XP_001348585.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23497482|gb|AAN37024.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA+ S PL L+ + +I++ ++ D+E+ GKL +D+++NM+L DV E
Sbjct: 1 MATISGSETFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|367016959|ref|XP_003682978.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
gi|359750641|emb|CCE93767.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
Length = 109
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL LI S+ + + + LR++ ++ ++ A+D+H NM+L +V+E+ T E
Sbjct: 29 PLSLINDSVVSKTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT------EKRGNK 82
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + LF+RGD VI+V
Sbjct: 83 AENKERFISKLFLRGDSVIVV 103
>gi|407927523|gb|EKG20414.1| hypothetical protein MPH_02260 [Macrophomina phaseolina MS6]
Length = 118
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL L++ ++ ++ + R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 27 EEHEFTSGPLSLLQTAVRSHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
R + +F+RGD VILV
Sbjct: 87 LANGKPGRPVNKDRFISKMFLRGDSVILV 115
>gi|313214959|emb|CBY41164.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V+E+ +
Sbjct: 29 PLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTSKGKGGQ 88
Query: 70 VRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VI+V PL A
Sbjct: 89 PVNRDRFISKMFLRGDSVIIVLKNPLEAA 117
>gi|124484977|ref|YP_001029593.1| hypothetical protein Mlab_0149 [Methanocorpusculum labreanum Z]
gi|124362518|gb|ABN06326.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 75
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 15/84 (17%)
Query: 10 KEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
K PL+++ L+ + + + L+ RE+RG L YD H+N++L EE E ++ T
Sbjct: 3 KRPLEILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEE-----EGENGTV-- 55
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
++ L VRGD VI +SP
Sbjct: 56 -------SLGTLIVRGDNVIYISP 72
>gi|380800505|gb|AFE72128.1| small nuclear ribonucleoprotein Sm D2 isoform 1, partial [Macaca
mulatta]
Length = 89
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR-RTVPF 79
+ ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++ + R +
Sbjct: 10 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 69
Query: 80 LFVRGDGVILV 90
+F+RGD VI+V
Sbjct: 70 MFLRGDSVIVV 80
>gi|325188073|emb|CCA22616.1| U6 snRNAassociated Smlike protein putative [Albugo laibachii Nc14]
Length = 119
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D + VK R R++ G L YDQ +N++L +E + + D+++Y +T
Sbjct: 30 LDLDKY-IDHSVCVKFRGGRQVHGTLKGYDQLVNLVL---DECIEFLREDNDSYRLSDKT 85
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + RG V+L+SP
Sbjct: 86 --RSIGLVVCRGTTVMLISP 103
>gi|320032480|gb|EFW14433.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 84
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + +I+V ++ DRE G L +D ++NM+L DV E T
Sbjct: 7 PLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYT------------- 53
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ +P + + G+ V ++ P
Sbjct: 54 AAQTKLPKILLNGNNVCMLIP 74
>gi|145230750|ref|XP_001389639.1| U6 snRNA-associated Sm-like protein LSm7 [Aspergillus niger CBS
513.88]
gi|134055758|emb|CAK44131.1| unnamed protein product [Aspergillus niger]
gi|350638639|gb|EHA26995.1| hypothetical protein ASPNIDRAFT_205537 [Aspergillus niger ATCC
1015]
Length = 136
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E + DDE E
Sbjct: 51 LDLNKY-MDKEVRVKFNGGREVIGTLKGYDQLMNLVLDDVKESMR----DDEGNE----- 100
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + RG ++L+SP
Sbjct: 101 NTRSLGLVVARGTIIVLISP 120
>gi|226530574|ref|NP_001148733.1| LSM7-like [Zea mays]
gi|195621704|gb|ACG32682.1| LSM7-like [Zea mays]
gi|413919649|gb|AFW59581.1| LSM7-like protein [Zea mays]
Length = 156
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA +E+A LDL + +D+ + VKL R++ G L YDQ LN++L +E V
Sbjct: 59 MAGRKETA----LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAVENER 110
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D+ + +T R + + RG V+LVSP
Sbjct: 111 EQDDPLKLSGKT--RQLGLIVCRGTAVMLVSP 140
>gi|296423698|ref|XP_002841390.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637628|emb|CAZ85581.1| unnamed protein product [Tuber melanosporum]
Length = 84
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+L+ + RI+V ++ D+E G L +D ++NM+L DV E +T E + + +
Sbjct: 7 PLELVDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEYESTGE---QVKLKKIL 63
Query: 72 TTRRTVPFLFVRGDG 86
+ L GDG
Sbjct: 64 LNGNNICMLIPGGDG 78
>gi|296808563|ref|XP_002844620.1| U6 snRNA binding protein [Arthroderma otae CBS 113480]
gi|238844103|gb|EEQ33765.1| U6 snRNA binding protein [Arthroderma otae CBS 113480]
Length = 155
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
++E KE LDL + +D+ + VK RE+ G L YDQ +N++L DV+E T+
Sbjct: 57 GQQQEKPKKENILDLTKY-MDKEVNVKFNGGREITGVLKGYDQLMNLVLDDVKE---TMR 112
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D++ T R++ + RG ++L+SP
Sbjct: 113 DDNDNI------TTRSLGLIVARGTLLVLLSP 138
>gi|448734412|ref|ZP_21716638.1| small nuclear ribonucleoprotein, lsm family [Halococcus
salifodinae DSM 8989]
gi|445800460|gb|EMA50815.1| small nuclear ribonucleoprotein, lsm family [Halococcus
salifodinae DSM 8989]
Length = 79
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL---GDVEEVVTTVEIDDETYEE 68
PLD++ +L E + V+L+ G L YDQH+N++L + E T E+ ET E
Sbjct: 6 PLDVLEATLGESVAVRLKDGEIYTGSLAGYDQHMNVVLEPASNDAEPPTPGEVGVETVES 65
Query: 69 IVRTTRRTVPFLFVRGDGVILVSP 92
+RGD V+ ++P
Sbjct: 66 TT----------IIRGDNVVTITP 79
>gi|403280870|ref|XP_003931930.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 212
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKS 88
Query: 70 VRTTR-RTVPFLFVRGDGVILVSPPLRTA 97
+ R + +F+ G VI+V LR A
Sbjct: 89 KPVNKDRYISKMFLCGGSVIVVLQNLRIA 117
>gi|452822058|gb|EME29081.1| U6 snRNA-associated Sm-like protein LSm5 [Galdieria sulphuraria]
Length = 89
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+L+ + +I+V +++D+E G L +DQ +NM+L DV E + T E ++R
Sbjct: 10 PLELVDKCIGSQIWVLMKTDKEFTGILRGFDQFVNMVLEDVSEY-------EWTSEGLIR 62
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
T + + G+ + ++ P
Sbjct: 63 THLDQI---LLNGNNICVLIP 80
>gi|402078814|gb|EJT74079.1| small nuclear ribonucleoprotein Sm D2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 117
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R++R+L ++ A+D+H NM+L +V+E+ T T
Sbjct: 26 EEHEFSAGPLSILQTAVRSHAQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 85
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + V R + +F+RGD VILV
Sbjct: 86 LANGKKGRPVNKD-RFISKMFLRGDSVILV 114
>gi|255953479|ref|XP_002567492.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589203|emb|CAP95343.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 83
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + RI+V ++ D+E G L +D ++NM++ DV E D T +I
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVMEDVTEF-------DYTGAQI-- 57
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+P L + G+ + ++ P
Sbjct: 58 ----KLPKLLLNGNNICMLIP 74
>gi|71030572|ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gi|68351884|gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L + V L+ +R+ G L AYD+++N++L D EE T+ D E +RT+ F
Sbjct: 12 LQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTE-----VKRTLGF 66
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 67 VLLRGENIV 75
>gi|118398961|ref|XP_001031807.1| Sm protein [Tetrahymena thermophila]
gi|89286141|gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D R+ V ++ R L G A+D+HLN++L + EE I +T E R T+R +
Sbjct: 11 IDYRVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEF---RPIKPKTKGEPERQTKRILGL 67
Query: 80 LFVRGDGVILV---SPPLRTA 97
+ +RG+ ++ + +PP + A
Sbjct: 68 VIIRGENIVSINAEAPPSQQA 88
>gi|348673388|gb|EGZ13207.1| hypothetical protein PHYSODRAFT_334991 [Phytophthora sojae]
Length = 106
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 1 MASEEESAV---KEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA+ S K+P LDL + +D+ + VK RE+ G L YDQ +N++L D E +
Sbjct: 1 MAANGASGGGSRKDPILDLAKY-IDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDCVEFL 59
Query: 57 TTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
D E + R V + RG V+LVSP TA
Sbjct: 60 R-----DPNDEYRITDDTRKVGLVVCRGTSVMLVSPVDGTA 95
>gi|50555361|ref|XP_505089.1| YALI0F06644p [Yarrowia lipolytica]
gi|49650959|emb|CAG77896.1| YALI0F06644p [Yarrowia lipolytica CLIB122]
Length = 115
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL L++ ++ ++ + R++++L ++ A+D+H NM+L +V+E+ T
Sbjct: 32 PLSLLQRAVQNHTQVLISCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKTKTASGKPGK 91
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
T R + +F+RGD VILV
Sbjct: 92 TVTKDRFISKMFLRGDTVILV 112
>gi|164661255|ref|XP_001731750.1| hypothetical protein MGL_1018 [Malassezia globosa CBS 7966]
gi|159105651|gb|EDP44536.1| hypothetical protein MGL_1018 [Malassezia globosa CBS 7966]
Length = 130
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+ +E KE + + +D+ I VK RE+ G L YDQ + +++ DVEE+
Sbjct: 31 GAPQEKPKKEAILNLAKYVDKEIRVKFMGGREVVGTLKGYDQLMTLVMDDVEEIKHDPSN 90
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ T E RRT+ +RG + L+SP
Sbjct: 91 GNTTGE------RRTLGLAVLRGTNLTLISP 115
>gi|119174655|ref|XP_001239674.1| hypothetical protein CIMG_09295 [Coccidioides immitis RS]
gi|392869868|gb|EAS28397.2| small nuclear ribonucleoprotein Sm D2 [Coccidioides immitis RS]
Length = 114
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 83
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R V +F+RGD VILV
Sbjct: 84 PKGGKGKGVNKD-RFVSKMFLRGDSVILV 111
>gi|440797084|gb|ELR18179.1| small nuclear ribonucleoprotein G, putative [Acanthamoeba
castellanii str. Neff]
Length = 76
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 16 IRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRR 75
+R +D+++ ++L ++R + G L +DQ +N++L D T EE+ T +
Sbjct: 9 LRRYMDKKLAIRLNANRRVSGILRGFDQFMNLVLED-------------TVEEVSSTEKN 55
Query: 76 TVPFLFVRGDGVILVSP 92
+ + +RG+ VIL+ P
Sbjct: 56 ELGMVVIRGNSVILIEP 72
>gi|258567138|ref|XP_002584313.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
gi|237905759|gb|EEP80160.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
Length = 114
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 83
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R V +F+RGD VILV
Sbjct: 84 PKGGKGKGVNKD-RFVSKMFLRGDSVILV 111
>gi|148692587|gb|EDL24534.1| mCG49049 [Mus musculus]
Length = 118
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDLVIVV 109
>gi|403169358|ref|XP_003328805.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167924|gb|EFP84386.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 125
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + + D+R+ VK RE+ G L YDQ LN+++ +VEE++ E + T +T
Sbjct: 36 LDLAKFA-DKRVRVKFMGGREITGILKGYDQLLNLVMDEVEEILR--EPEGATVTSPPKT 92
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ +RG +++++P
Sbjct: 93 --RSLGLAVIRGTSLVVINP 110
>gi|383852431|ref|XP_003701731.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Megachile rotundata]
Length = 219
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ RI + L+ R G A+D+H+N+ILGD EE +I + ++ R +R + F
Sbjct: 15 INYRIRIILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKPKNTKQPEREDKRVLGF 71
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 72 VLLRGENIV 80
>gi|145499845|ref|XP_001435907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403043|emb|CAK68510.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D R+ + L R L G A+D+HLN+IL + EE I + EI T+RT+
Sbjct: 11 IDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEE----YRIRKQGIHEI--ETKRTLGM 64
Query: 80 LFVRGDGVILVS 91
+ VRGD +I +S
Sbjct: 65 IIVRGDNIISLS 76
>gi|358382440|gb|EHK20112.1| hypothetical protein TRIVIDRAFT_213486 [Trichoderma virens
Gv29-8]
Length = 215
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--------VTTVEIDDETYEEIVR 71
++ R+ V L+ R+L G++ AYD+H+N++L D EE + + +V+
Sbjct: 13 INYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRIKRKQNKPAAPGGSSSGQTVVQ 72
Query: 72 TTRRTVPFLFVRGDGVILV---SPP 93
+RT+ + VRG +I + SPP
Sbjct: 73 EEKRTLGLVIVRGAHIISLTVESPP 97
>gi|6323305|ref|NP_013377.1| Smd2p [Saccharomyces cerevisiae S288c]
gi|6226704|sp|Q06217.2|SMD2_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|2340971|gb|AAB67368.1| Ylr275wp [Saccharomyces cerevisiae]
gi|151940982|gb|EDN59363.1| Sm D2 [Saccharomyces cerevisiae YJM789]
gi|190405334|gb|EDV08601.1| small nuclear ribonucleoprotein Sm D2 [Saccharomyces cerevisiae
RM11-1a]
gi|259148258|emb|CAY81505.1| Smd2p [Saccharomyces cerevisiae EC1118]
gi|285813692|tpg|DAA09588.1| TPA: Smd2p [Saccharomyces cerevisiae S288c]
gi|349579983|dbj|GAA25144.1| K7_Smd2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 110
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI ++ R + + LR++ ++ ++ A+D+H NM+L +V+E+ T E +
Sbjct: 30 PMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT------EKKGKN 83
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + LF+RGD VI+V
Sbjct: 84 VINRERFISKLFLRGDSVIVV 104
>gi|429861913|gb|ELA36576.1| small nuclear ribonucleoprotein sm d2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 118
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R++R+L ++ A+D+H NM+L +V+E+ T T
Sbjct: 27 EEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + V R + +F+RGD VILV
Sbjct: 87 LANGKKGRPVNKD-RFISKMFLRGDSVILV 115
>gi|268561698|ref|XP_002638393.1| C. briggsae CBR-LSM-5 protein [Caenorhabditis briggsae]
gi|341889312|gb|EGT45247.1| hypothetical protein CAEBREN_08263 [Caenorhabditis brenneri]
gi|341889389|gb|EGT45324.1| hypothetical protein CAEBREN_18101 [Caenorhabditis brenneri]
Length = 91
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + +I+V +++D+E+ G L +D ++NM+L DV E T E T + +
Sbjct: 14 PLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAEGKRMTKLDTIL 73
Query: 72 TTRRTVPFLFVRGDG 86
+ L G+G
Sbjct: 74 LNGNHITMLVPGGEG 88
>gi|410074971|ref|XP_003955068.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
gi|372461650|emb|CCF55933.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
Length = 114
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL LI S+ R + + LR++ ++ ++ A+D+H NM+L +V+E+ T E +
Sbjct: 34 PLSLINDSVLTRRPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT------EKKGKS 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ R + LF+RGD VI+V
Sbjct: 88 LVNRERFISKLFLRGDSVIVV 108
>gi|380476129|emb|CCF44882.1| small nuclear ribonucleoprotein Sm D2 [Colletotrichum higginsianum]
Length = 118
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R++R+L ++ A+D+H NM+L +V+E+ T T
Sbjct: 27 EEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + V R + +F+RGD VILV
Sbjct: 87 LANGKKGRPVNKD-RFISKMFLRGDSVILV 115
>gi|145491875|ref|XP_001431936.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399043|emb|CAK64538.1| unnamed protein product [Paramecium tetraurelia]
Length = 126
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D R+ + L R L G A+D+HLN+IL + EE I + EI T+RT+
Sbjct: 11 IDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEE----YRIRKQGIHEI--ETKRTLGM 64
Query: 80 LFVRGDGVILVS 91
+ VRGD +I +S
Sbjct: 65 IIVRGDNIISLS 76
>gi|444724875|gb|ELW65462.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 117
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
+ ++ + ++++L G++ A+D+H NM+L +V+E+ T V + + R + +
Sbjct: 39 NTQVLINCCNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKSKPVNKDRYISKM 98
Query: 81 FVRGDGVILV 90
F+RGD VI+V
Sbjct: 99 FLRGDLVIVV 108
>gi|384483289|gb|EIE75469.1| hypothetical protein RO3G_00173 [Rhizopus delemar RA 99-880]
Length = 202
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE---VVTTVEIDDETYEEIVRTTRRT 76
++ R+ V + R L G++ A+D+H+N++L D EE V + + ++ T +E+ +RT
Sbjct: 13 VNYRLRVTMSDSRVLTGQMLAFDKHMNLVLADCEEFRKVKSKAKSNNPTEQEM----KRT 68
Query: 77 VPFLFVRGDGVILVS 91
+ + +RG+ +I +S
Sbjct: 69 LGLVILRGETIISIS 83
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 48/77 (62%), Gaps = 8/77 (10%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ DR L G L A+D+H+N++L D +E +++ E +E+ +R++ F
Sbjct: 5 INYRVRVTVQDDRMLVGNLMAFDKHMNVVLSDCQE-YRSIKKKGEDLKEV----KRSLGF 59
Query: 80 LFVRGDGVILV---SPP 93
+ +RG+ ++ + +PP
Sbjct: 60 IVLRGENIVTITAEAPP 76
>gi|115387341|ref|XP_001211176.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
gi|114195260|gb|EAU36960.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
Length = 115
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL L++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 84
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + V R + +F+RGD VILV
Sbjct: 85 PKGSKGKGVNKD-RFISKMFLRGDSVILV 112
>gi|400600902|gb|EJP68570.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 255
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D++I VK RE+ G L +D +N++L DV+E V E ++ T
Sbjct: 169 LDLTKY-MDKQITVKFNGGREVMGTLKGFDALMNLVLDDVQETVRDEEGNEST------- 220
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R + + VRG ++L+SP
Sbjct: 221 --RPLGLVVVRGTLLVLISP 238
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+N+ILGD EE +I + ++ R +R + F
Sbjct: 13 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKPKNTKQPEREEKRVLGF 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>gi|150400725|ref|YP_001324491.1| like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
gi|150013428|gb|ABR55879.1| Like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
Length = 71
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD + S++ + VKL+ + ++G+L AYD HLN+ L + D E E
Sbjct: 5 QRPLDALGKSINTNVLVKLKDGQTVKGRLKAYDLHLNVAL-------ENAKFDGEEKE-- 55
Query: 70 VRTTRRTVPFLFVRGDGVILVS 91
P + VRGD V+ +S
Sbjct: 56 -------YPLIVVRGDNVLFIS 70
>gi|309241419|ref|XP_003115877.1| CRE-LSM-5 protein [Caenorhabditis remanei]
gi|308256412|gb|EFP00365.1| CRE-LSM-5 protein [Caenorhabditis remanei]
Length = 91
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + +I+V +++D+E+ G L +D ++NM+L DV E T E T + +
Sbjct: 14 PLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAEGKRMTKLDTIL 73
Query: 72 TTRRTVPFLFVRGDG 86
+ L G+G
Sbjct: 74 LNGNHITMLVPGGEG 88
>gi|388852511|emb|CCF53913.1| probable U6 snRNA-associated Sm-like protein LSm5 [Ustilago
hordei]
Length = 103
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + I+V +++DRE G L +D ++NM+L DV E T ++
Sbjct: 24 PLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETCLD 72
>gi|392563452|gb|EIW56631.1| U6 snRNA-associated Sm-like protein LSm7 [Trametes versicolor
FP-101664 SS1]
Length = 94
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + ++ERI VK RE+ G L YDQ LN++L +V+E + T + + +
Sbjct: 10 LDLAKY-VNERIRVKFTGGREVTGILKGYDQLLNLVLDEVQENLQTPDGE---------S 59
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R + + +RG + L+SP
Sbjct: 60 TTRNLGLVVLRGPTITLLSP 79
>gi|309264759|ref|XP_003086355.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R+ ++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKS 87
Query: 70 VRTTRRT-VPFLFVRGDGVILV 90
+ + +F+RGD VI+V
Sbjct: 88 KPVNKDCYISKIFLRGDSVIVV 109
>gi|268536210|ref|XP_002633240.1| C. briggsae CBR-LSM-7 protein [Caenorhabditis briggsae]
Length = 103
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1 MASEEESAVKEPL-DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
M+ ++ KE + DL R LD+ I VK + RE G L +DQ LNM+L D E +
Sbjct: 1 MSKDDGKRKKESVVDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLR-- 57
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D ++ R + + RG + +VSP
Sbjct: 58 ---DPQNPSVIGDETRPLGLIVARGTAITVVSP 87
>gi|302839956|ref|XP_002951534.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
gi|300263143|gb|EFJ47345.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
Length = 110
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++ +L ++ A+D+H NMIL +V+E+ T + + +
Sbjct: 24 PLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKGSKGS 83
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R V +F+RGD VI+V
Sbjct: 84 RPVNKDRFVSKMFLRGDSVIMV 105
>gi|154288569|ref|XP_001545066.1| hypothetical protein BC1G_16433 [Botryotinia fuckeliana B05.10]
gi|347835616|emb|CCD50188.1| hypothetical protein [Botryotinia fuckeliana]
Length = 140
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+++ VK R ++G L YD +N++L DVEE +T DDE E
Sbjct: 55 LDLGKY-MDKQVTVKFNGGRHVKGTLKGYDALMNLVLDDVEEKLT----DDEGTE----- 104
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + RG +I +SP
Sbjct: 105 AWRSLGLVVARGTLLIGISP 124
>gi|63501063|ref|XP_619909.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R+ ++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKS 87
Query: 70 VRTTRRT-VPFLFVRGDGVILV 90
+ + +F+RGD VI+V
Sbjct: 88 KPVNKDCYISKIFLRGDSVIVV 109
>gi|389644410|ref|XP_003719837.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|351639606|gb|EHA47470.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|440470057|gb|ELQ39146.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae Y34]
gi|440490054|gb|ELQ69649.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae P131]
Length = 117
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ ++ ++ + +R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 26 EEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 85
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 86 LASGKKGRPVNKDRFISKMFLRGDSVILV 114
>gi|384492952|gb|EIE83443.1| hypothetical protein RO3G_08148 [Rhizopus delemar RA 99-880]
Length = 174
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE---VVTTVEIDDETYEEIVRTTRRT 76
++ R+ V + R L G++ A+D+H+N++L D EE V + + ++ T +E+ +RT
Sbjct: 13 VNYRLRVTMSDSRVLTGQMLAFDKHMNLVLADCEEFRKVKSKAKSNNTTEQEM----KRT 68
Query: 77 VPFLFVRGDGVILVS 91
+ + +RG+ +I +S
Sbjct: 69 LGLIILRGETIISIS 83
>gi|448738899|ref|ZP_21720920.1| Like-Sm ribonucleoprotein core [Halococcus thailandensis JCM
13552]
gi|445801285|gb|EMA51629.1| Like-Sm ribonucleoprotein core [Halococcus thailandensis JCM
13552]
Length = 78
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 15/85 (17%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL----GDVEEVVTTVEIDDETYE 67
PLD++ +L + + V+L+ G+L YDQHLN++L GD E D+
Sbjct: 5 PLDVLEANLGDGVAVRLKDGVTYTGELGGYDQHLNVVLEPAGGDSEP-----SADEGEAS 59
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
E V +T +RGD V+ ++P
Sbjct: 60 ETVESTT------IIRGDNVVSITP 78
>gi|358392255|gb|EHK41659.1| hypothetical protein TRIATDRAFT_250596 [Trichoderma atroviride
IMI 206040]
Length = 84
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLMGFDDYVNMVLEDVTE 49
>gi|440635668|gb|ELR05587.1| small nuclear ribonucleoprotein D2 [Geomyces destructans 20631-21]
Length = 118
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+ PL +++ ++ ++ + R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 25 ALEQHEFTSGPLSILQTAVRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTET 84
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 85 PRLAGGKKGRPVNKDRFISKMFLRGDSVILV 115
>gi|340519199|gb|EGR49438.1| predicted protein [Trichoderma reesei QM6a]
Length = 217
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV------VTTVEIDDETYEEIVRTT 73
++ R+ V L+ R+L G++ AYD+H+N++L D EE + + +V+
Sbjct: 13 INYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRVKRKNKSAAPGGSAGQTVVQEE 72
Query: 74 RRTVPFLFVRGDGVILV---SPP 93
+RT+ + RG +I + SPP
Sbjct: 73 KRTLGLVIARGAHIISLTVESPP 95
>gi|403253972|ref|XP_003919759.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 117
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ ++ + R++++L G++ A+ +H NM+L +V+E+ T V + +
Sbjct: 28 PLSVLTQSVKNSTQVLINCRNNKQLLGRVKAFHRHCNMVLENVKEMWTEVPKSSKGKKSK 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ R V +F+RGD V +V
Sbjct: 88 PVSKDRRVSKMFLRGDSVTVV 108
>gi|340501173|gb|EGR27984.1| small nuclear ribonucleoprotein sm d2, putative [Ichthyophthirius
multifiliis]
Length = 103
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFL 80
+ ++ + LR++R++ ++ A+D+H+NM+L +V E+ T V + R +
Sbjct: 28 NTQVLIALRNNRKILARVRAFDRHMNMVLENVLEMWTEVPRGSHGQKSKPMRKERYHSKM 87
Query: 81 FVRGDGVILV 90
F+RGD VI V
Sbjct: 88 FLRGDSVIFV 97
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+N+ILGD EE +I + ++ R +R + F
Sbjct: 12 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKPKNTKQPEREEKRVLGF 68
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 69 VLLRGENIV 77
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+N+ILGD EE +I + ++ R +R + F
Sbjct: 141 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKPKNTKQPEREEKRVLGF 197
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 198 VLLRGENIV 206
>gi|310794394|gb|EFQ29855.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 118
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R++R+L ++ A+D+H NM+L +V+E+ T T
Sbjct: 27 EEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + V R + +F+RGD VILV
Sbjct: 87 LANGKKGRPVNKD-RFISKMFLRGDSVILV 115
>gi|307193681|gb|EFN76364.1| Small nuclear ribonucleoprotein-associated protein B
[Harpegnathos saltator]
Length = 208
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+N+ILGD EE +I + ++ R +R + F
Sbjct: 5 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKPKNTKQPEREEKRVLGF 61
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 62 VLLRGENIV 70
>gi|397779277|ref|YP_006543750.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
gi|396937779|emb|CCJ35034.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
Length = 75
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 12 PLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
PLD++ L+ + + + L+ RE+RG L YD H+N++L EE E+D
Sbjct: 5 PLDILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEE-----EMDGAV----- 54
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
+ + L VRGD VI ++P
Sbjct: 55 ----QKLGTLIVRGDNVIYITP 72
>gi|342880846|gb|EGU81864.1| hypothetical protein FOXB_07659 [Fusarium oxysporum Fo5176]
Length = 118
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R++R+L ++ A+D+H NM+L +V+E+ T T
Sbjct: 27 EEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + V R + +F+RGD VILV
Sbjct: 87 LANGKKGRPVNKD-RFISKMFLRGDSVILV 115
>gi|307188198|gb|EFN73030.1| Small nuclear ribonucleoprotein-associated protein B [Camponotus
floridanus]
Length = 209
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+N+ILGD EE +I + ++ R +R + F
Sbjct: 5 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKPKNTKQPEREEKRVLGF 61
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 62 VLLRGENIV 70
>gi|296809754|ref|XP_002845215.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|327292564|ref|XP_003230980.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
gi|238842603|gb|EEQ32265.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|326466786|gb|EGD92239.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
Length = 114
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLS--LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL +++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 26 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 83
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R + +F+RGD VILV
Sbjct: 84 PKGGKGKGVNKD-RFISKMFLRGDSVILV 111
>gi|226295235|gb|EEH50655.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb18]
Length = 81
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+++ + VK RE+ G L YDQ +N++L DV+EV+ DDE + T R +
Sbjct: 1 MEKEVCVKFNGAREVTGTLKGYDQLMNLVLDDVKEVMR----DDEDNQ-----TTRPLGL 51
Query: 80 LFVRGDGVILVSP 92
+ RG ++L+SP
Sbjct: 52 VVARGTLLVLISP 64
>gi|395646750|ref|ZP_10434610.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
gi|395443490|gb|EJG08247.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
Length = 88
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 7 SAVKEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+ K PL+++ L+ + + + L+ E+RG L YD HLN++L EE E+D
Sbjct: 13 AMTKRPLEILDQVLNGQPVIISLKGGHEIRGVLQGYDVHLNLVLDRAEE-----EVDGAV 67
Query: 66 YEEIVRTTRRTVPFLFVRGDGVILVSP 92
+ R T L VRGD VI +SP
Sbjct: 68 VK---RGT------LIVRGDNVIYISP 85
>gi|296204251|ref|XP_002749249.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G+ A+D+H NM+L +++E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRAKAFDRHCNMVLENMKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|322703763|gb|EFY95367.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium anisopliae ARSEF
23]
Length = 121
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV-TTVE 60
EE PL +++ ++ ++ + +R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 30 EEHEFTSGPLSILQTAVKSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWDETPR 89
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ D V R + +F+RGD VILV
Sbjct: 90 LADGKKGRPVNKD-RFISKMFLRGDSVILV 118
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+L+ + RI++ +R+D+E+ G L +D+ +NM+L DV E T + T E +
Sbjct: 7 PLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKLEQIL 66
Query: 72 TTRRTVPFLFVRGDG 86
+ L G+G
Sbjct: 67 LNGNNITMLVPGGEG 81
>gi|392867674|gb|EAS29072.2| U6 snRNA-associated Sm-like protein LSm5 [Coccidioides immitis
RS]
Length = 84
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + +I+V ++ DRE G L +D ++NM+L DV E T
Sbjct: 7 PLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYT------------- 53
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ +P + + G+ V ++ P
Sbjct: 54 GAQTKLPKILLNGNNVCMLIP 74
>gi|45358711|ref|NP_988268.1| small nuclear ribonucleoprotein [Methanococcus maripaludis S2]
gi|340624470|ref|YP_004742923.1| small nuclear ribonucleoprotein [Methanococcus maripaludis X1]
gi|45047577|emb|CAF30704.1| Small nuclear ribonucleoprotein (Sm protein) [Methanococcus
maripaludis S2]
gi|339904738|gb|AEK20180.1| small nuclear ribonucleoprotein [Methanococcus maripaludis X1]
Length = 72
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD + S++ + V L+ + ++G+L AYD H+N+ L + + +E D+E
Sbjct: 5 QRPLDALGKSINTNVTVYLKDGKVVKGRLKAYDLHMNVALENAK-----IENDEE----- 54
Query: 70 VRTTRRTVPFLFVRGDGVILVS 91
+ P L VRGD V+ VS
Sbjct: 55 -----KEFPMLVVRGDNVLYVS 71
>gi|313226859|emb|CBY22004.1| unnamed protein product [Oikopleura dioica]
gi|313242576|emb|CBY34708.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V+E+ +
Sbjct: 29 PLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTAKGKGGQ 88
Query: 70 VRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VI+V PL A
Sbjct: 89 PVNRDRFISKMFLRGDSVIIVLKNPLEAA 117
>gi|300176167|emb|CBK23478.2| unnamed protein product [Blastocystis hominis]
Length = 234
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV-----VTTVEIDDETYEEIVRTTR 74
++ R+ V +R +R L G L A+D+H+N+ILGD EE + V + + EE R +
Sbjct: 5 VNYRMRVVIRENRVLVGTLMAFDKHMNLILGDCEEFRKIRSKSGVAVVNGVIEE--REEK 62
Query: 75 RTVPFLFVRGDGVI 88
T+ + +RG+ ++
Sbjct: 63 NTLGLVLLRGENIV 76
>gi|299471840|emb|CBN77010.1| Sm-like protein LSm5 [Ectocarpus siliculosus]
Length = 85
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + R+++ ++ D+EL G L +D ++NM+L DV E YE
Sbjct: 7 PLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTE-----------YEVDAD 55
Query: 72 TTRRTVPF--LFVRGDGVILVSP 92
T+R + + + G+ V ++ P
Sbjct: 56 GTKRRIQLDQILLNGNNVAMLVP 78
>gi|428180050|gb|EKX48919.1| hypothetical protein GUITHDRAFT_93594 [Guillardia theta CCMP2712]
Length = 94
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI++ L+ D+E G L +D ++NM+L DV E
Sbjct: 11 PLELIDRCIGSRIWIILKGDKEFVGTLQGFDDYVNMVLEDVTE 53
>gi|146098272|ref|XP_001468379.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|157875373|ref|XP_001686081.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|398021989|ref|XP_003864157.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
gi|401428184|ref|XP_003878575.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|68129154|emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|134072746|emb|CAM71463.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|322494823|emb|CBZ30127.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322502391|emb|CBZ37475.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
Length = 103
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P L+ ++ E R++++ R+ + L + A+D+H N++L V+E+ + + +
Sbjct: 28 PFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEITESHGSEQK----- 82
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+RT+ LF+RG+ VI +
Sbjct: 83 ----QRTIENLFLRGESVIFI 99
>gi|156088647|ref|XP_001611730.1| Sm domain containing protein [Babesia bovis]
gi|154798984|gb|EDO08162.1| Sm domain containing protein [Babesia bovis]
Length = 159
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV-VTTVEIDDETYEEIVRTTRRTVP 78
L R+ V ++ R+ G A+D+H+N++L D EE +T + D+ E+ +RT+
Sbjct: 12 LQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVEL----KRTLG 67
Query: 79 FLFVRGDGVI 88
F+ +RG+ ++
Sbjct: 68 FIMLRGENIV 77
>gi|453087944|gb|EMF15985.1| U6 snRNA-associated Sm-like protein LSm7 [Mycosphaerella populorum
SO2202]
Length = 134
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + L++ I VK RE+ G L +DQ +N++L +V+E T +E T
Sbjct: 46 LDLSKY-LEKGITVKFNGGREVTGTLKGFDQLMNLVLDNVKET---------TRDEEGNT 95
Query: 73 TRRTVPFLFVRGDGVILVSP 92
+ R + L RG ++L+SP
Sbjct: 96 STRNLGLLVARGTLLVLISP 115
>gi|444732316|gb|ELW72617.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 199
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G+ A+D+H NM L +V+E+ T V + ++
Sbjct: 19 PLSVLTQSVKNNTQVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKGKKKF 78
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 79 KPVNKDRYISKMFLRGDSVIVV 100
>gi|449544087|gb|EMD35061.1| hypothetical protein CERSUDRAFT_85794 [Ceriporiopsis
subvermispora B]
Length = 93
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + ++ERI VK RE+ G L YDQ LN++L +VEE + T E ++T
Sbjct: 10 LDLAKY-VNERIRVKFTGGREVTGVLKGYDQLLNLVLDEVEEQLQT--------EGELKT 60
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + +RG V L+SP
Sbjct: 61 --RSLGLVVLRGPTVTLLSP 78
>gi|242221237|ref|XP_002476371.1| predicted protein [Postia placenta Mad-698-R]
gi|220724376|gb|EED78423.1| predicted protein [Postia placenta Mad-698-R]
Length = 111
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE + PL +++ ++ ++ + LR++++L ++ A+D+H NM+L +V+E+ T
Sbjct: 19 ALEEFEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWT-- 76
Query: 60 EIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
E+ ++ V R + +F+RGD VIL+
Sbjct: 77 EMPKGKNKKPVNKD-RFISKMFLRGDSVILI 106
>gi|150399222|ref|YP_001322989.1| small nuclear riboprotein-like protein [Methanococcus vannielii
SB]
gi|150011925|gb|ABR54377.1| Like-Sm ribonucleoprotein core [Methanococcus vannielii SB]
Length = 72
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD + S++ + V L+ + ++G+L AYD H+N+ L + + +E D+E
Sbjct: 5 QRPLDALGKSINTNVTVYLKDGKLVKGRLKAYDLHMNVALENAK-----IESDEE----- 54
Query: 70 VRTTRRTVPFLFVRGDGVILVS 91
+ P L VRGD V+ VS
Sbjct: 55 -----KEFPMLVVRGDNVLYVS 71
>gi|425772328|gb|EKV10736.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum Pd1]
gi|425777592|gb|EKV15755.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum PHI26]
Length = 117
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL L++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 29 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 86
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R + +F+RGD VILV
Sbjct: 87 PKGAKGKGVNKD-RFISKMFLRGDSVILV 114
>gi|156540632|ref|XP_001599264.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B
[Nasonia vitripennis]
Length = 217
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+N+ILGD EE +I + ++ R +R + F
Sbjct: 13 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKPKNTKQPEREEKRVLGF 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>gi|156031032|ref|XP_001584841.1| hypothetical protein SS1G_14124 [Sclerotinia sclerotiorum 1980]
gi|154700515|gb|EDO00254.1| hypothetical protein SS1G_14124 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 138
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+++ VK R ++G L YD +N++L DVEE +T DDE E
Sbjct: 53 LDLGKY-MDKQVTVKFNGGRHVKGTLKGYDALMNLVLDDVEEKLT----DDEGNE----- 102
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R + + RG +I +SP
Sbjct: 103 AWRALGLVVARGTLLIGISP 122
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV--RTTRRTV 77
++ R+ V ++ R L G++ A+D+H+N++L D EE V + EE+ + +RT+
Sbjct: 5 INWRLKVTIQDGRALTGQMLAFDRHMNLVLADCEE-FRRVRPKKKAGEEVAPEQELKRTL 63
Query: 78 PFLFVRGDGVILVS 91
+ +RG+ V+ +S
Sbjct: 64 GLVILRGEAVVSIS 77
>gi|50287515|ref|XP_446187.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525494|emb|CAG59111.1| unnamed protein product [Candida glabrata]
Length = 110
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI ++ R + + LR++ +L ++ A+D+H N++L +V+E+ T + + + I
Sbjct: 30 PMSLINDAMITRNPVIISLRNNHKLIARVKAFDRHCNLVLENVKELWT----EKKNKQTI 85
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R R + LF+RGD VI++
Sbjct: 86 NR--ERFISKLFLRGDSVIVI 104
>gi|321466061|gb|EFX77059.1| hypothetical protein DAPPUDRAFT_305959 [Daphnia pulex]
Length = 234
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV-VTTVEIDDETYEEIVRTTRRTVP 78
L+ R+ V L+ R G A+D+H+N+ILGD EE +I+ R +R +
Sbjct: 13 LNYRVRVTLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKAKINKSGVGATEREEKRVLG 72
Query: 79 FLFVRGDGVI 88
+ +RG+ ++
Sbjct: 73 LVLLRGENIV 82
>gi|237835661|ref|XP_002367128.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|211964792|gb|EEA99987.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|221485337|gb|EEE23618.1| snRNP protein Lsm5, putative [Toxoplasma gondii GT1]
gi|221506198|gb|EEE31833.1| snRNP protein Lsm5, putative [Toxoplasma gondii VEG]
Length = 119
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL L+ + R+++ ++ D+EL G L +D +NM+L DV E T +T + +
Sbjct: 26 PLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFTPTGVKKTKLQSIL 85
Query: 72 TTRRTVPFLFVRGD 85
++ L GD
Sbjct: 86 LNGNSITMLVPGGD 99
>gi|226530979|ref|NP_001152342.1| LSM7-like [Zea mays]
gi|195651475|gb|ACG45205.1| LSM7-like [Zea mays]
gi|195655329|gb|ACG47132.1| LSM7-like [Zea mays]
gi|414585245|tpg|DAA35816.1| TPA: LSM7-like protein [Zea mays]
Length = 98
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA +E+A LDL + +D+ + VKL R++ G L YDQ LN++L +E V
Sbjct: 1 MAGRKETA----LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAVEYER 52
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
D+ + +T R + + RG V+LVSP
Sbjct: 53 EQDDPLKLSGKT--RQLGLIVCRGTAVMLVSP 82
>gi|358054346|dbj|GAA99272.1| hypothetical protein E5Q_05966 [Mixia osmundae IAM 14324]
Length = 83
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + R++V L+S+RE+ G L +D +NM+L DV E T +
Sbjct: 7 PLELIDKCIGSRLWVVLKSEREIVGTLLGFDDFVNMVLDDVTEYENTAQ 55
>gi|336274873|ref|XP_003352190.1| hypothetical protein SMAC_02625 [Sordaria macrospora k-hell]
Length = 108
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R+ R++ ++ A+D+H+NM+L +V+E+ T T
Sbjct: 17 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 76
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + + V R + +F+RGD VILV
Sbjct: 77 LANGKKGKPVNKD-RFISKMFLRGDSVILV 105
>gi|239787841|ref|NP_001155181.1| small ribonucleoprotein particle protein B [Apis mellifera]
Length = 217
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+N+ILGD EE +I + ++ R +R + F
Sbjct: 13 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKPKNTKQPEREDKRVLGF 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>gi|330827552|ref|XP_003291838.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
gi|325077961|gb|EGC31640.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
Length = 78
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 14 DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTT 73
DL RL LD+++ VKL +R ++G L +D +N+ L D EVV+ E YE
Sbjct: 10 DLTRL-LDKKLNVKLNGNRTVQGILRGFDTFMNIALKDTVEVVSPT----EKYE------ 58
Query: 74 RRTVPFLFVRGDGVILVSP 92
+ + +RG+ +IL+ P
Sbjct: 59 ---IGMVLIRGNSIILMEP 74
>gi|164426898|ref|XP_961124.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
gi|157071520|gb|EAA31888.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
Length = 119
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R+ R++ ++ A+D+H+NM+L +V+E+ T T
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + + V R + +F+RGD VILV
Sbjct: 88 LANGKKGKPVNKD-RFISKMFLRGDSVILV 116
>gi|344302358|gb|EGW32663.1| hypothetical protein SPAPADRAFT_61726 [Spathaspora passalidarum
NRRL Y-27907]
Length = 84
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL++I S+ ++ V + SD+E GKL +D ++NM+L DV VEID+E
Sbjct: 12 PLEIIDKSVGNKVKVLMTSDKEFYGKLIGFDDYVNMVLEDV------VEIDNEG------ 59
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
T V + + G V ++ P
Sbjct: 60 TKSDPVKKMLLNGGHVAMIIP 80
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+NMILGD EE ++ + E R +R + F
Sbjct: 13 INYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEE-FRKIKPKNSKVE---REEKRVLGF 68
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 69 VLLRGESIV 77
>gi|340712457|ref|XP_003394776.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus terrestris]
gi|340712459|ref|XP_003394777.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus terrestris]
gi|350399783|ref|XP_003485637.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus impatiens]
gi|350399786|ref|XP_003485638.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus impatiens]
Length = 217
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+N+ILGD EE +I + ++ R +R + F
Sbjct: 13 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKPKNTKQPEREDKRVLGF 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>gi|15227722|ref|NP_178480.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana]
gi|30678085|ref|NP_849931.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana]
gi|4582434|gb|AAD24820.1| putative snRNP splicing factor [Arabidopsis thaliana]
gi|27765062|gb|AAO23652.1| At2g03870 [Arabidopsis thaliana]
gi|110742944|dbj|BAE99367.1| putative snRNP splicing factor [Arabidopsis thaliana]
gi|330250666|gb|AEC05760.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana]
gi|330250667|gb|AEC05761.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana]
Length = 99
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VKL R++ G L YDQ LN++L + E V +++ ++T
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFV-------RDHDDPLKT 60
Query: 73 TRRT--VPFLFVRGDGVILVSP 92
T +T + + RG V+LVSP
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSP 82
>gi|297814702|ref|XP_002875234.1| hypothetical protein ARALYDRAFT_484298 [Arabidopsis lyrata subsp.
lyrata]
gi|297321072|gb|EFH51493.1| hypothetical protein ARALYDRAFT_484298 [Arabidopsis lyrata subsp.
lyrata]
Length = 99
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VKL R++ G L YDQ LN++L + E V +++ ++T
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFV-------RDHDDPLKT 60
Query: 73 TRRT--VPFLFVRGDGVILVSP 92
T +T + + RG V+LVSP
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSP 82
>gi|302421256|ref|XP_003008458.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261351604|gb|EEY14032.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|346974640|gb|EGY18092.1| hypothetical protein VDAG_08426 [Verticillium dahliae VdLs.17]
Length = 80
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLTGFDDYVNMVLEDVTE 49
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ + L+ R G A+D+H+NMILGD EE ++ + E R +R + F
Sbjct: 11 INYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEE-FRKIKPKNSKVE---REEKRVLGF 66
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 67 VLLRGESIV 75
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE---VVTTVEIDDETYEEIVRTTRRT 76
++ R+ V + R L G++ A+D+H+N++L D EE V + +ET E + +RT
Sbjct: 15 INWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPE--QEMKRT 72
Query: 77 VPFLFVRGDGVILVS 91
+ + +RG+ V+ +S
Sbjct: 73 LGLVILRGETVVSIS 87
>gi|336472988|gb|EGO61148.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2508]
gi|350293763|gb|EGZ74848.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2509]
Length = 119
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R+ R++ ++ A+D+H+NM+L +V+E+ T T
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + + V R + +F+RGD VILV
Sbjct: 88 LANGKKGKPVNKD-RFISKMFLRGDSVILV 116
>gi|444315235|ref|XP_004178275.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
gi|387511314|emb|CCH58756.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
Length = 109
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI +L + I + LR++ ++ ++ A+D+H NM+L +V+E+ T E
Sbjct: 29 PMSLINDALISKTPIIISLRNNHKIIARVKAFDKHCNMVLENVKELWT------ERNGNK 82
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ R + LF+RGD VI++
Sbjct: 83 LINKERFISKLFLRGDSVIVI 103
>gi|380092270|emb|CCC10046.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 119
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVE 60
EE PL +++ ++ ++ + +R+ R++ ++ A+D+H+NM+L +V+E+ T T
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + + V R + +F+RGD VILV
Sbjct: 88 LANGKKGKPVNKD-RFISKMFLRGDSVILV 116
>gi|196001101|ref|XP_002110418.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190586369|gb|EDV26422.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 84
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI++ ++SD+E+ G L +D +NM+L DV E TT +
Sbjct: 8 PLELIDKCIGSRIHIIMKSDKEVVGTLLGFDDFVNMVLEDVTEYETTAD 56
>gi|732947|emb|CAA83056.1| SmX4 protein [Saccharomyces cerevisiae]
Length = 33
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAY 41
PLDL++L+LDER+Y+KLR R L G L A+
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAF 33
>gi|330038624|ref|XP_003239651.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
gi|327206575|gb|AEA38753.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
Length = 85
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 26 VKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVRGD 85
+ +R++R+L G + A+D+H+N+IL +V E+ TT + Y E R + + +RGD
Sbjct: 24 IFVRNNRKLVGYIRAFDKHVNLILENVRELWTTCVEKNIFYHE------RYIAKMILRGD 77
Query: 86 GVILV 90
++L+
Sbjct: 78 SIVLL 82
>gi|315043418|ref|XP_003171085.1| RH73529p [Arthroderma gypseum CBS 118893]
gi|311344874|gb|EFR04077.1| RH73529p [Arthroderma gypseum CBS 118893]
Length = 151
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E T+ D++
Sbjct: 65 LDLTKY-MDKEVNVKFNGGREVTGVLKGYDQLMNLVLDDVKE---TMRDDNDN------V 114
Query: 73 TRRTVPFLFVRGDGVILVSP 92
T R++ + RG ++L+SP
Sbjct: 115 TTRSLGLIVARGTLLVLLSP 134
>gi|134045481|ref|YP_001096967.1| hypothetical protein MmarC5_0437 [Methanococcus maripaludis C5]
gi|150402324|ref|YP_001329618.1| small nuclear riboprotein-like protein [Methanococcus maripaludis
C7]
gi|159905904|ref|YP_001549566.1| small nuclear riboprotein-like protein [Methanococcus maripaludis
C6]
gi|132663106|gb|ABO34752.1| Small nuclear ribonucleoprotein, LSM family [Methanococcus
maripaludis C5]
gi|150033354|gb|ABR65467.1| Like-Sm ribonucleoprotein core [Methanococcus maripaludis C7]
gi|159887397|gb|ABX02334.1| Like-Sm ribonucleoprotein core [Methanococcus maripaludis C6]
Length = 72
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD + S++ + V L+ + ++G+L AYD H+N+ L + + +E D+E
Sbjct: 5 QRPLDALGKSINTNVTVFLKDGKVVKGRLKAYDLHMNVALENAK-----IENDEE----- 54
Query: 70 VRTTRRTVPFLFVRGDGVILVS 91
+ P L VRGD V+ VS
Sbjct: 55 -----KEFPMLVVRGDNVLYVS 71
>gi|70987204|ref|XP_749081.1| small nuclear ribonucleoprotein (LSM5) [Aspergillus fumigatus
Af293]
gi|66846711|gb|EAL87043.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus Af293]
gi|159123148|gb|EDP48268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|317034233|ref|XP_001396223.2| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus niger CBS
513.88]
gi|358373053|dbj|GAA89653.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 83
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V +++D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTE 49
>gi|304323319|gb|ADM24796.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323321|gb|ADM24797.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323331|gb|ADM24802.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323333|gb|ADM24803.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323339|gb|ADM24806.1| putative small nuclear ribonucleoprotein [Sporidiobolus
johnsonii]
Length = 77
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D++I VK RE+ G L YDQ LN+++ D+EE + D +T + R++
Sbjct: 2 VDKKIRVKFTGGREVVGTLKGYDQLLNLVMDDLEETLR----DPDTGLPSIPPATRSLGL 57
Query: 80 LFVRGDGVILVSP 92
+RG ++++SP
Sbjct: 58 AVLRGTSLVVLSP 70
>gi|302697739|ref|XP_003038548.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
gi|300112245|gb|EFJ03646.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
Length = 84
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
PL+LI + RI+V +++D E G L +D +NM+L DV E TT
Sbjct: 7 PLELIDRCIGSRIWVVMKNDHEFTGTLLGFDDFVNMVLEDVTEYETTA 54
>gi|317139035|ref|XP_003189120.1| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus oryzae
RIB40]
Length = 102
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V +++D+E G L +D ++NM+L DV E
Sbjct: 26 PLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTE 68
>gi|225711330|gb|ACO11511.1| Probable small nuclear ribonucleoprotein Sm D2 [Caligus
rogercresseyi]
Length = 115
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++ G++ A+D+H NM+L V+E+ T + + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKPLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKA 86
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD +ILV
Sbjct: 87 KPVNKDRYISKMFLRGDSIILV 108
>gi|121711305|ref|XP_001273268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
gi|119401419|gb|EAW11842.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
Length = 83
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|304323323|gb|ADM24798.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323325|gb|ADM24799.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323327|gb|ADM24800.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323329|gb|ADM24801.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323335|gb|ADM24804.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323337|gb|ADM24805.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323341|gb|ADM24807.1| putative small nuclear ribonucleoprotein [Sporidiobolus
johnsonii]
Length = 77
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D++I VK RE+ G L YDQ LN+++ D+EE + D +T + R++
Sbjct: 2 VDKKIRVKFTGGREVVGTLKGYDQLLNLVMDDLEETLR----DPDTGLPSIPPATRSLGL 57
Query: 80 LFVRGDGVILVSP 92
+RG ++++SP
Sbjct: 58 AVLRGTSLVVLSP 70
>gi|238482069|ref|XP_002372273.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
gi|220700323|gb|EED56661.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
Length = 83
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V +++D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTE 49
>gi|255954305|ref|XP_002567905.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589616|emb|CAP95763.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL L++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 35 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 92
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R + +F+RGD VIL+
Sbjct: 93 PKGAKGKGVNKD-RFISKMFLRGDSVILI 120
>gi|443924956|gb|ELU43898.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--VTTVEIDDETYEEIVRTTRRTV 77
++ R+ + L R L G++ A+D+H+N++L D EE V + + D E+ + +RT+
Sbjct: 16 VNWRLKITLNDGRALTGQMLAFDKHMNLVLADCEEFRRVKSKKSDQGGVEQEL---KRTL 72
Query: 78 PFLFVRGDGVILVS---PP 93
+ +RG+ V+ +S PP
Sbjct: 73 GLIILRGETVVSISVEGPP 91
>gi|340522327|gb|EGR52560.1| predicted protein [Trichoderma reesei QM6a]
Length = 84
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|195146742|ref|XP_002014343.1| GL19145 [Drosophila persimilis]
gi|194106296|gb|EDW28339.1| GL19145 [Drosophila persimilis]
Length = 205
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L+ R+ + L+ R G A+D+H+N+ILGD EE + + E R +R + F
Sbjct: 19 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE---REEKRVLGF 75
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 76 VLLRGENIV 84
>gi|315045688|ref|XP_003172219.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
gi|311342605|gb|EFR01808.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
Length = 84
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E + +T +
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS---GGQTKLSKIL 63
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V L G+G + +P
Sbjct: 64 LNGNNVCMLIPGGEGPVSAAP 84
>gi|380474440|emb|CCF45778.1| U6 snRNA-associated Sm-like protein LSm5 [Colletotrichum
higginsianum]
Length = 82
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|262089301|gb|ACY24522.1| putative LSM domain protein [uncultured crenarchaeote 57a5]
Length = 104
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 15 LIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTR 74
L++ S+ + + VKL+ R +RGK+ +D+ +N+++ D E++ + + E+ +
Sbjct: 28 LLQESIGKNVLVKLKGRRSVRGKIKGFDKQMNIVITDATEIIE--QQGNNNSEKKEQEQE 85
Query: 75 RTVPFLFVRGDGVILVS 91
V +RGD VI ++
Sbjct: 86 SQVGEALIRGDNVITIA 102
>gi|198475808|ref|XP_001357165.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
gi|198137969|gb|EAL34232.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
Length = 191
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L+ R+ + L+ R G A+D+H+N+ILGD EE + + E R +R + F
Sbjct: 5 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE---REEKRVLGF 61
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 62 VLLRGENIV 70
>gi|295657072|ref|XP_002789110.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284564|gb|EEH40130.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E T
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYT------------- 53
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ +P + + G+ V ++ P
Sbjct: 54 GAQTKLPKILLNGNNVCMLIP 74
>gi|156840670|ref|XP_001643714.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156114337|gb|EDO15856.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 109
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI S+ R + + LR++ ++ ++ A+D+H NM+L +V+E+ T + + +E
Sbjct: 29 PMSLIDESMVLRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGNKTINKE- 87
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + LF+RGD +I++
Sbjct: 88 -----RFISKLFLRGDSIIVI 103
>gi|68482073|ref|XP_715054.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
gi|46436659|gb|EAK96018.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
Length = 119
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PL++I S+ +R+ V + D+E GKL +D ++NM+L DV EV
Sbjct: 54 PLEVIDRSVGKRVRVLMTGDKEFNGKLIGFDDYVNMVLEDVTEV 97
>gi|336473000|gb|EGO61160.1| hypothetical protein NEUTE1DRAFT_116005 [Neurospora tetrasperma
FGSC 2508]
gi|350293750|gb|EGZ74835.1| putative U6 SNRNA-associated SM-LIKE protein LSM5 [Neurospora
tetrasperma FGSC 2509]
gi|380092260|emb|CCC10036.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 84
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|388507056|gb|AFK41594.1| unknown [Medicago truncatula]
Length = 99
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + +D+ + VKL R++ G L YDQ LN++L +E V + D+ + +T
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAVEFLRDPDDPLKTTDQT 64
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R++ + RG V+LVSP
Sbjct: 65 --RSLGLIVCRGTAVMLVSP 82
>gi|169843758|ref|XP_001828604.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
gi|116510312|gb|EAU93207.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
Length = 84
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL+LI + +I+V +++DRE G L +D +NM+L DV E T
Sbjct: 7 PLELIDRCIGSKIWVVMKNDREFTGTLLGFDDFVNMVLEDVTEFENT 53
>gi|310792345|gb|EFQ27872.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 82
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|109122268|ref|XP_001083377.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+R D V+LV
Sbjct: 88 KPVNKDRYISKMFLRQDSVVLV 109
>gi|365990359|ref|XP_003672009.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
gi|343770783|emb|CCD26766.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 50/81 (61%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDERI--YVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI S+ ++ + LR++ ++ ++ A+D+H NM+L +V+E+ T ++ ++I
Sbjct: 30 PMSLINDSVISKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT-----EKKGKQI 84
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
+ R + LF+RGD +I++
Sbjct: 85 I-NRERFISKLFLRGDSIIVI 104
>gi|401413338|ref|XP_003886116.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
gi|325120536|emb|CBZ56090.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
Length = 118
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL L+ + R+++ ++ D+EL G L +D +NM+L DV E T
Sbjct: 25 PLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFT 71
>gi|395529567|ref|XP_003766882.1| PREDICTED: uncharacterized protein LOC100930002 [Sarcophilus
harrisii]
Length = 242
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 152 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 211
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ + +F+RGD VI+V
Sbjct: 212 KPVNKDHYISKMFLRGDSVIVV 233
>gi|193890979|gb|ACF28643.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 82
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
L LI + RI+V ++ D+EL G L +D ++NM+L DV E T E T E +
Sbjct: 1 LALIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPEGKKVTQLESILL 60
Query: 73 TRRTVPFLFVRGD 85
+ + GD
Sbjct: 61 NGNNITMMVPGGD 73
>gi|16944624|emb|CAD11394.1| probable U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Neurospora
crassa]
Length = 84
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFAGTLVGFDDYVNMVLEDVTE 49
>gi|348572834|ref|XP_003472197.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
Length = 117
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EEE PL ++ S+ + ++ + R++++L G + A+D+H NM+L +V+E+ T V
Sbjct: 20 EEEKFNTGPLSVLTQSIKNNTQVLIDCRNNKKLLGLVKAFDRHCNMVLENVKEMWTEVPK 79
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ + + +F+ G+ VI+V
Sbjct: 80 SGKGKKSKPVNKDCYISKMFLHGESVIMV 108
>gi|448410087|ref|ZP_21575036.1| Sm ribonucleoprotein-like protein [Halosimplex carlsbadense
2-9-1]
gi|445672367|gb|ELZ24943.1| Sm ribonucleoprotein-like protein [Halosimplex carlsbadense
2-9-1]
Length = 61
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
PLD++ SL E + V+L+ E G L YDQH+N++L D
Sbjct: 5 PLDVLEASLGEEVTVRLKGGEEYVGDLSGYDQHMNLVLED 44
>gi|320544917|ref|NP_001188780.1| small ribonucleoprotein particle protein SmB [Drosophila
melanogaster]
gi|10720262|sp|Q05856.1|RSMB_DROME RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|290272|gb|AAA28858.1| ribonucleoprotein [Drosophila melanogaster]
gi|16769000|gb|AAL28719.1| LD14049p [Drosophila melanogaster]
gi|220952928|gb|ACL89007.1| SmB-PA [synthetic construct]
gi|318068414|gb|ADV37030.1| small ribonucleoprotein particle protein SmB [Drosophila
melanogaster]
Length = 199
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L+ R+ + L+ R G A+D+H+N+ILGD EE + + E R +R + F
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE---REEKRVLGF 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>gi|448118540|ref|XP_004203524.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|448120946|ref|XP_004204107.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384392|emb|CCE79096.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384975|emb|CCE78510.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
Length = 113
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPFLFVR 83
+ V R++ +L ++ A+D+H N+IL +V+E+ T +++ + + R V +F+R
Sbjct: 43 VVVSCRNNHKLVARVKAFDRHCNLILENVKELWTESVRNNKGQKVNSISKERFVSKMFLR 102
Query: 84 GDGVILV 90
GD VI+V
Sbjct: 103 GDSVIIV 109
>gi|325190755|emb|CCA25247.1| small nuclear ribonucleoproteinassociated protein pu [Albugo
laibachii Nc14]
Length = 218
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT-TVEIDDETYEEIVRTTRRTVP 78
++ R+ V L+ R L G A+D+H+N++LGD EE T ++ EE R +R +
Sbjct: 13 INYRMKVTLQDSRALVGYFMAFDKHMNIVLGDCEEFRTLKSKLKTNVSEE--RVEKRYLG 70
Query: 79 FLFVRGDGVILVS---PPL 94
+ +RG+ V+ ++ PPL
Sbjct: 71 LVLLRGESVVSLTVDGPPL 89
>gi|317034834|ref|XP_001401271.2| small nuclear ribonucleoprotein Sm D2 [Aspergillus niger CBS
513.88]
gi|350639668|gb|EHA28022.1| hypothetical protein ASPNIDRAFT_41962 [Aspergillus niger ATCC 1015]
gi|358374829|dbj|GAA91418.1| small nuclear ribonucleoprotein SmD2 [Aspergillus kawachii IFO
4308]
Length = 115
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL L++ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T E
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT--EK 84
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ V R + +F+RGD VILV
Sbjct: 85 PKGGNGKGVNKD-RFISKMFLRGDSVILV 112
>gi|297736225|emb|CBI24863.3| unnamed protein product [Vitis vinifera]
Length = 107
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 6 ESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+S KE LDL + +D+ + VKL R++ G L YDQ LN++L + E + D +
Sbjct: 9 QSGRKETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR----DPD 63
Query: 65 TYEEIVRTTRRTVPFLFVRGDGVILVSP 92
++ TRR + + RG V+LVSP
Sbjct: 64 DPQKTTDQTRR-LGLIVCRGTAVMLVSP 90
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.138 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,394,179,720
Number of Sequences: 23463169
Number of extensions: 49078290
Number of successful extensions: 158211
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 672
Number of HSP's that attempted gapping in prelim test: 156301
Number of HSP's gapped (non-prelim): 1946
length of query: 97
length of database: 8,064,228,071
effective HSP length: 66
effective length of query: 31
effective length of database: 6,515,658,917
effective search space: 201985426427
effective search space used: 201985426427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)