BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034340
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3
SV=3
Length = 102
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
EEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/97 (72%), Positives = 80/97 (82%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M EE V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE
Sbjct: 1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE 60
Query: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97
D+ET EEI+R +R + LFVRGDGVIL+SPPLRT+
Sbjct: 61 KDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 69/90 (76%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LGD EE+VT + ++
Sbjct: 2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEE 61
Query: 64 ETYEEIVRTTRRTVPFLFVRGDGVILVSPP 93
++ ++T R+ LFVRGD VIL++PP
Sbjct: 62 TDKDKALKTIRKHYEMLFVRGDSVILIAPP 91
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSE--- 58
Query: 72 TTRRTVPFLFVRGDGVILVSPP 93
+ R +F+RGD V L+S P
Sbjct: 59 -SERRCEMVFIRGDTVTLISTP 79
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 5 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL------- 57
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILVSP 92
E TRR + + +RGD ++ +SP
Sbjct: 58 -----EDGEVTRR-LGTVLIRGDNIVYISP 81
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ SL + V+L+ RE RG L YD H+N++L D EE+ E+VR
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG---------EVVR 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KVGSVV----IRGDTVVFVSP 72
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
+ PLD++ +L+ + V+L+ RE RG+L YD H+N++L + EE+
Sbjct: 3 QRPLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKEN----------- 51
Query: 70 VRTTRRTVPFLFVRGDGVILVSP 92
R + + VRGD V+ VSP
Sbjct: 52 --EASRKLGTIIVRGDTVVYVSP 72
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D + VKL+S ++G L YDQHLN+ILGD EEI T+ R +
Sbjct: 17 VDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDA--------------EEIGETSIRRLGL 62
Query: 80 LFVRGDGVILVSP 92
VRGD V++++P
Sbjct: 63 TLVRGDSVVVITP 75
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +L+ + V+L+ RE RG L YD H+N++L + EE+ EIVR
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDG---------EIVR 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KIGGVV----IRGDNVVYVSP 72
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3
SV=1
Length = 76
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L D E + E+V+
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLALSP 72
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +LD + V+L+ RE RG+L YD H+N++L + EE+ E+V
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREG---------EVVS 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KFSSVV----IRGDNVVYVSP 72
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +LD + V+L+ RE RG+L YD H+N++L + EE+ E+V
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDG---------EVVS 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KFSSVV----IRGDNVVYVSP 72
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E V E+V+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLAISP 72
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD++ +LD + V+L+ RE RG+L YD H+N++L + EE+ E+V
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREG---------EVVS 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
V +RGD V+ VSP
Sbjct: 56 KFGSVV----IRGDNVVYVSP 72
>sp|Q8U0P4|RUXX_PYRFU Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3
SV=1
Length = 76
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L + E + E+V+
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLAISP 72
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis
elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 18 AKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 60 EIDDETYEEIVRTTR-RTVPFLFVRGDGVIL-VSPPLRTA 97
+ ++ + R + +F+RGD VIL V PL A
Sbjct: 78 PKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNPLAQA 117
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain
MM 739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L D + + E E
Sbjct: 5 PLDVIHKSLDKEVLVILKRGAEYRGKLIGYDIHLNVVLADAQLI--------ENGE---- 52
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+++ + +RGD V+ +SP
Sbjct: 53 -PKKSYGKIVIRGDNVLAISP 72
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L E + E+V+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 KYGKIV----IRGDNVLAISP 72
>sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06500 PE=1 SV=1
Length = 75
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E + E+V+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ V +RGD V+ +SP
Sbjct: 56 RYGKIV----IRGDNVLAISP 72
>sp|C5A1H1|RUXX_THEGJ Putative snRNP Sm-like protein OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1738 PE=3
SV=1
Length = 76
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLD+I SLD+ + V L+ E RGKL YD HLN++L + + E+V+
Sbjct: 5 PLDVIHRSLDKDVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQDG---------EVVK 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
+ + V VRGD V+ +SP
Sbjct: 56 SYGKIV----VRGDNVLAISP 72
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium
discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S++ ++ + +R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 19 PLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKA 78
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VILV
Sbjct: 79 KPINKDRFISKMFLRGDSVILV 100
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila
melanogaster GN=SmD2 PE=3 SV=1
Length = 119
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV-EIDDETYEE 68
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 86
Query: 69 IVRTTRRTVPFLFVRGDGVILV-SPPLRTA 97
R + +F+RGD VILV PL TA
Sbjct: 87 KPVNKDRFISKMFLRGDSVILVLRNPLATA 116
>sp|O14036|SMD2_SCHPO Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1
Length = 115
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 12 PLDLIRLSLD--ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL +++ ++ +++ + R++++L ++ A+D+H NM+L +V+E+ T + +
Sbjct: 29 PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGK 88
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
R + +F+RGDGV+LV
Sbjct: 89 AINKDRFISKMFLRGDGVVLV 109
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2
PE=2 SV=1
Length = 118
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2
PE=1 SV=1
Length = 118
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3
SV=1
Length = 118
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 70 VRTTR-RTVPFLFVRGDGVILV 90
+ R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
A +P+D+++ +L + + ++ +RE G L YD ++N++L + E++
Sbjct: 6 ANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIING--------- 56
Query: 68 EIVRTTRRTVPFLFVRGDGVILVSP 92
+ + VRGD VI VSP
Sbjct: 57 ----ENKGVFDRILVRGDNVIFVSP 77
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
+P+D+++ +L + + ++ +RE G L YD ++N++L + E++ + Y+ +
Sbjct: 9 KPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGE--NKGVYDRV- 65
Query: 71 RTTRRTVPFLFVRGDGVILVSP 92
VRGD VI VSP
Sbjct: 66 ----------LVRGDNVIFVSP 77
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P+ LI ++ R + + LR++ ++ ++ A+D+H NM+L +V+E+ T E +
Sbjct: 30 PMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT------EKKGKN 83
Query: 70 VRTTRRTVPFLFVRGDGVILV 90
V R + LF+RGD VI+V
Sbjct: 84 VINRERFISKLFLRGDSVIVV 104
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
L+ R+ + L+ R G A+D+H+N+ILGD EE + + E R +R + F
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE---REEKRVLGF 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5
PE=3 SV=3
Length = 91
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5
PE=3 SV=2
Length = 91
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5
PE=1 SV=3
Length = 91
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5
PE=3 SV=3
Length = 91
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5
OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1
Length = 97
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV------VTTVEIDD 63
PL+LI + RI++ +++D+E G L +D ++N+ L DV E + TV++D+
Sbjct: 18 PLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKLDN 75
>sp|O42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm5 PE=1 SV=2
Length = 80
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + ++V ++S+RE G L +D ++N++L DV E Y+ +
Sbjct: 7 PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTE-----------YDTVTG 55
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
T + L + G+G+ ++ P
Sbjct: 56 VTEKHSEML-LNGNGMCMLIP 75
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL R D+RI R++ G L +DQ +N++L DVEE + E D + I
Sbjct: 26 LDLSRYQ-DQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPE-DGKLTGAI--- 80
Query: 73 TRRTVPFLFVRGDGVILVSP 92
R + + VRG ++L++P
Sbjct: 81 --RKLGLVVVRGTTLVLIAP 98
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + D +I VKL + + G L YDQ +N++L D E ++ DDE E++
Sbjct: 28 LDLAKYK-DSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNP--DDENNTELISK 84
Query: 73 TRRTVPFLFVRGDGVILVS 91
R + +R G ILVS
Sbjct: 85 NARKLGLTVIR--GTILVS 101
>sp|Q8SQH7|LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_1830 PE=3 SV=1
Length = 70
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
+P +++ L ER+ VK +S G L +D+H+N++L ++VE ++
Sbjct: 3 DPFCFLKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML-----TCSSVEGSEDKV---- 53
Query: 71 RTTRRTVPFLFVRGDGVILVSPPL 94
LF+RG+ ++ V P L
Sbjct: 54 ---------LFLRGENILFVGPRL 68
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 14/79 (17%)
Query: 14 DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTT 73
DL +L LD+++ +KL +R + G L +D +N+ L D EVV+ E YE
Sbjct: 10 DLTKL-LDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPT----EKYE------ 58
Query: 74 RRTVPFLFVRGDGVILVSP 92
+ + +RG+ ++L+ P
Sbjct: 59 ---IGMVIIRGNSILLMEP 74
>sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7
OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1
Length = 97
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRT 72
LDL + L + I VK RE++G L YDQ +N+ L +E + E T +E
Sbjct: 13 LDLQKF-LGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE---- 67
Query: 73 TRRTVPFLFVRGDGVILVSP 92
+R + + RG V++V P
Sbjct: 68 -KRFLGLVVCRGSSVMMVCP 86
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 16 IRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRR 75
++ +D+R+ +KL R + G L +D +N++L D+T EE T+
Sbjct: 9 VKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVL-------------DDTVEECKDNTKN 55
Query: 76 TVPFLFVRGDGVILV 90
+ + +RG+ +++V
Sbjct: 56 NIGMVVIRGNSIVMV 70
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAY----DQHLNMILGDVEE---VVTTVEID 62
PL L++ +L+ + I V +R +RG Y D+H+N+IL DVEE ++ ++
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKSLPST 225
Query: 63 DETYEEIVRTTRRTVPFLFVRGDGVILV 90
+ I +R LF++GD V+ V
Sbjct: 226 RNQNQPIQPKIKRYYGQLFIKGDTVVSV 253
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
++ R+ V ++ R + G+ A+D+H+N+++ D EE + E EE +RT+
Sbjct: 14 INYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREE-----KRTLGM 68
Query: 80 LFVRGDGVILVS---PP 93
+ +RG+ V+ +S PP
Sbjct: 69 ILIRGETVVSMSVEAPP 85
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL++I ++++++ + L+S+RE G L +D +N+IL D E + E D+ E++++
Sbjct: 8 PLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPE-DESRNEKVMQ 66
Query: 72 TTRRTVPFLFVRGDGVILVSP 92
R + + G+ + ++ P
Sbjct: 67 HHGR----MLLSGNNIAILVP 83
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=lsm-6 PE=3 SV=2
Length = 82
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+ +S K+P + + + VKL S +G+L + D ++N+ L EE + V+
Sbjct: 4 GATSQSEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVK- 62
Query: 62 DDETYEEIVRTTRRTVPFLFVRGDGVILVS 91
RR+ FVRG+ V+ +S
Sbjct: 63 ------------RRSYGDAFVRGNNVMYIS 80
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D R+ L+ R G A+D+H+N+IL D +E +I + ++ R +R +
Sbjct: 13 IDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEF---RKIKPKNSKQAEREEKRVLGL 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENLV 78
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTRRTVPF 79
+D R+ L+ R G A+D+H+N+IL D +E +I + ++ R +R +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEF---RKIKPKNSKQAEREEKRVLGL 69
Query: 80 LFVRGDGVI 88
+ +RG+ ++
Sbjct: 70 VLLRGENLV 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,847,494
Number of Sequences: 539616
Number of extensions: 1234663
Number of successful extensions: 4541
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4458
Number of HSP's gapped (non-prelim): 88
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)