Query 034341
Match_columns 97
No_of_seqs 94 out of 96
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 21:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f5h_A Type I polyketide synth 68.9 1.9 6.6E-05 27.4 1.3 21 73-93 9-29 (68)
2 2lq3_A Uncharacterized protein 62.4 2.3 7.7E-05 30.4 0.8 10 64-73 17-26 (130)
3 3ush_A Uncharacterized protein 61.5 2.3 7.8E-05 30.3 0.7 10 64-73 15-24 (129)
4 1sr8_A Cobalamin biosynthesis 54.1 5.2 0.00018 31.7 1.7 23 64-89 3-25 (298)
5 2jwo_A RAG-2, V(D)J recombinat 36.8 11 0.00036 25.0 0.8 10 65-74 5-14 (82)
6 1ga6_A Serine-carboxyl protein 23.0 33 0.0011 26.7 1.5 24 65-95 348-371 (372)
7 2nac_A NAD-dependent formate d 18.8 32 0.0011 27.2 0.7 9 62-70 7-15 (393)
8 1ik9_C DNA ligase IV; DNA END 18.4 75 0.0026 17.4 2.0 14 77-90 19-32 (37)
9 4fc5_A TON_0340, putative unch 15.0 47 0.0016 25.5 0.8 23 67-89 47-73 (270)
10 2l4w_A Uncharacterized protein 14.4 61 0.0021 22.6 1.2 12 68-79 12-23 (120)
No 1
>3f5h_A Type I polyketide synthase PIKAIII, type I polyketide synthase pikaiv fusion protein...; docking domain, pikromycin, H2-T2; 1.75A {Streptomyces venezuelae}
Probab=68.88 E-value=1.9 Score=27.44 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=16.4
Q ss_pred cCCCCCCCCHHHHHHHHhccc
Q 034341 73 PENRAVEIDPAELREMLLNHK 93 (97)
Q Consensus 73 Pen~~~e~D~aelR~~lL~~~ 93 (97)
||..|..+|+.+||.|+|..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (68)
T 3f5h_A 9 PEASIDDLDAEALIRMALGPR 29 (68)
T ss_dssp ---CGGGCCHHHHHHHHHCHH
T ss_pred CccccccccHHHHHHHhcCCc
Confidence 888899999999999999754
No 2
>2lq3_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI:biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=62.35 E-value=2.3 Score=30.38 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=8.4
Q ss_pred cCCCCccccc
Q 034341 64 PDPITGYYRP 73 (97)
Q Consensus 64 pDP~TG~y~P 73 (97)
-||.|||||-
T Consensus 17 ~~P~TGf~Rd 26 (130)
T 2lq3_A 17 CAPMTGWYRN 26 (130)
T ss_dssp TSSSCCCSSS
T ss_pred CCCCcccCcC
Confidence 3899999994
No 3
>3ush_A Uncharacterized protein; DUF2237, PF09996, PSI-biology, NESG, structural genomics, no structural genomics consortium, unknown function; 1.69A {Salinibacter ruber}
Probab=61.52 E-value=2.3 Score=30.33 Aligned_cols=10 Identities=60% Similarity=1.105 Sum_probs=8.6
Q ss_pred cCCCCccccc
Q 034341 64 PDPITGYYRP 73 (97)
Q Consensus 64 pDP~TG~y~P 73 (97)
-||.|||||=
T Consensus 15 ~~P~TGf~Rd 24 (129)
T 3ush_A 15 MDPETGFYRD 24 (129)
T ss_dssp BTTBCSTTSS
T ss_pred CCCCCccccC
Confidence 3899999994
No 4
>1sr8_A Cobalamin biosynthesis protein (CBID); structural genomics, PSI, protein structure initiative, center for structural genomics, MCSG; 1.90A {Archaeoglobus fulgidus} SCOP: e.54.1.1
Probab=54.10 E-value=5.2 Score=31.70 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=17.7
Q ss_pred cCCCCcccccCCCCCCCCHHHHHHHH
Q 034341 64 PDPITGYYRPENRAVEIDPAELREML 89 (97)
Q Consensus 64 pDP~TG~y~Pen~~~e~D~aelR~~l 89 (97)
.||+|||=.||..-+.- +++++.
T Consensus 3 ~dpv~~~~~p~~w~~~~---~~~~~v 25 (298)
T 1sr8_A 3 IDPIELYRYPEKWIKDR---DAEKKV 25 (298)
T ss_dssp BCTTTCCBCCGGGCCCS---SHHHHH
T ss_pred CCCccCCcCcHHHHHHH---HHHHHH
Confidence 39999999999998766 444443
No 5
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=36.76 E-value=11 Score=25.02 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=8.2
Q ss_pred CCCCcccccC
Q 034341 65 DPITGYYRPE 74 (97)
Q Consensus 65 DP~TG~y~Pe 74 (97)
.|.||||+-=
T Consensus 5 ~~etGYWI~C 14 (82)
T 2jwo_A 5 SPEFGYWITC 14 (82)
T ss_dssp SSSCSSCSCS
T ss_pred CCcCceEEEe
Confidence 6899999865
No 6
>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*
Probab=22.98 E-value=33 Score=26.74 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=19.0
Q ss_pred CCCCcccccCCCCCCCCHHHHHHHHhccccc
Q 034341 65 DPITGYYRPENRAVEIDPAELREMLLNHKVR 95 (97)
Q Consensus 65 DP~TG~y~Pen~~~e~D~aelR~~lL~~~~~ 95 (97)
||+||+ +-+|...|-+.+++.+++
T Consensus 348 D~~TGl-------Gtpn~~~l~~~~~~~~~~ 371 (372)
T 1ga6_A 348 DYPTGW-------GSLDIAKLSAYIRSNGFG 371 (372)
T ss_dssp BTTTBT-------CEECHHHHHHHHHHHCC-
T ss_pred CCCccC-------chhhHHHHHHHHhhcccc
Confidence 888887 667999999999887764
No 7
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=18.83 E-value=32 Score=27.22 Aligned_cols=9 Identities=44% Similarity=0.970 Sum_probs=7.2
Q ss_pred cccCCCCcc
Q 034341 62 WAPDPITGY 70 (97)
Q Consensus 62 W~pDP~TG~ 70 (97)
--|||+|||
T Consensus 7 ~~~~~~~~~ 15 (393)
T 2nac_A 7 LYDDPVDGY 15 (393)
T ss_dssp CBCCCTTCS
T ss_pred ecCCCCCCC
Confidence 358999998
No 8
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=18.37 E-value=75 Score=17.41 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=10.9
Q ss_pred CCCCCHHHHHHHHh
Q 034341 77 AVEIDPAELREMLL 90 (97)
Q Consensus 77 ~~e~D~aelR~~lL 90 (97)
+.+||+.|||.-|-
T Consensus 19 ~rd~t~~eLk~il~ 32 (37)
T 1ik9_C 19 FIDTDLNQLKEVFS 32 (37)
T ss_dssp SSCCCHHHHHHHHH
T ss_pred cCcCCHHHHHHHHH
Confidence 46689999998663
No 9
>4fc5_A TON_0340, putative uncharacterized protein; unknown function; 2.30A {Thermococcus onnurineus}
Probab=15.00 E-value=47 Score=25.55 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=16.1
Q ss_pred CCcccccCCCCCCCC----HHHHHHHH
Q 034341 67 ITGYYRPENRAVEID----PAELREML 89 (97)
Q Consensus 67 ~TG~y~Pen~~~e~D----~aelR~~l 89 (97)
+||+|.|.....|+| ++.|-..|
T Consensus 47 ~TGFpv~~~~~~ETDGP~GA~ala~aL 73 (270)
T 4fc5_A 47 VTGFPIPPMMVAETDGPPGALAIYRAV 73 (270)
T ss_dssp EECCCBTTTTBCBSSSHHHHHHHHHHH
T ss_pred EeCcccCCCCCcccCCcHHHHHHHHHH
Confidence 688888877777888 45555444
No 10
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=14.44 E-value=61 Score=22.65 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=10.3
Q ss_pred CcccccCCCCCC
Q 034341 68 TGYYRPENRAVE 79 (97)
Q Consensus 68 TG~y~Pen~~~e 79 (97)
-|.|.|-|+|.+
T Consensus 12 ~~~WkpvN~f~~ 23 (120)
T 2l4w_A 12 GGRWKHVNHFDE 23 (120)
T ss_dssp SSTTTCCCCCSS
T ss_pred CCCccccccccc
Confidence 478999999976
Done!