BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034344
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 91.3 bits (225), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDS---STSFFGVYD 57
MG +L PK EK + GQ +RYGLSSMQGWR MEDAH A L S S SFF VYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 58 GHGGKAVAKFCAKYLHQQVLKHEIY--SAG 85
GH G VAK+C ++L + ++ + SAG
Sbjct: 61 GHAGSQVAKYCCEHLLDHITNNQDFKGSAG 90
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 91.3 bits (225), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDS---STSFFGVYD 57
MG +L PK EK + GQ +RYGLSSMQGWR MEDAH A L S S SFF VYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 58 GHGGKAVAKFCAKYLHQQVLKHEIY--SAG 85
GH G VAK+C ++L + ++ + SAG
Sbjct: 61 GHAGSQVAKYCCEHLLDHITNNQDFKGSAG 90
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAY---PDLDSSTSFFGVYD 57
+G +L PKTEK + G +RYGLSSMQGWR MEDAH A P SFF VYD
Sbjct: 3 LGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYD 62
Query: 58 GHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSA 91
GH G VA +C+ +L + + +E + A SA
Sbjct: 63 GHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSA 96
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR
PHOSPHATASE COMPLEXED With Zn2+
Length = 304
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 56/96 (58%)
Query: 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHG 60
+G YLS P T K S D NE + G SSMQGWR + EDAH + D SFF VYDGHG
Sbjct: 2 LGAYLSEPLTTKDSSDESNEFLASGSSSMQGWRISQEDAHNCILNFDDQCSFFAVYDGHG 61
Query: 61 GKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFL 96
G VA++C+ +L + E Y + + ++AFL
Sbjct: 62 GAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFL 97
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 15/65 (23%)
Query: 24 YGLSSMQGWRATMEDAHAAYP---------------DLDSSTSFFGVYDGHGGKAVAKFC 68
YG +S+ G R MEDA + P D S+ FFGVYDGHGG VA +C
Sbjct: 14 YGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYC 73
Query: 69 AKYLH 73
+ +H
Sbjct: 74 RERMH 78
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 15/65 (23%)
Query: 24 YGLSSMQGWRATMEDAHAAYP---------------DLDSSTSFFGVYDGHGGKAVAKFC 68
YG +S+ G R MEDA + P D S+ FFGVYDGHGG VA +C
Sbjct: 26 YGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYC 85
Query: 69 AKYLH 73
+ +H
Sbjct: 86 RERMH 90
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 15/65 (23%)
Query: 24 YGLSSMQGWRATMEDAHAAYP---------------DLDSSTSFFGVYDGHGGKAVAKFC 68
YG +S+ G R MEDA + P D S+ FFGVYDGHGG VA +C
Sbjct: 11 YGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYC 70
Query: 69 AKYLH 73
+ +H
Sbjct: 71 RERMH 75
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 19/69 (27%)
Query: 24 YGLSSMQGWRATMEDAHAAYPD---------LDS----------STSFFGVYDGHGGKAV 64
YG++S+ G R MED+ + P LD S FFGVYDGHGG V
Sbjct: 14 YGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHGGSQV 73
Query: 65 AKFCAKYLH 73
A +C + +H
Sbjct: 74 ANYCRERMH 82
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 20/70 (28%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGGKA 63
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 5 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHK 64
Query: 64 VAKFCAKYLH 73
VA +C LH
Sbjct: 65 VADYCRDRLH 74
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 20/70 (28%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGGKA 63
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 29 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHK 88
Query: 64 VAKFCAKYLH 73
VA +C LH
Sbjct: 89 VADYCRDRLH 98
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 20/70 (28%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGGKA 63
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 22 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHK 81
Query: 64 VAKFCAKYLH 73
VA +C LH
Sbjct: 82 VADYCRDRLH 91
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With
The Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 20/70 (28%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGGKA 63
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 16 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHK 75
Query: 64 VAKFCAKYLH 73
VA +C LH
Sbjct: 76 VADYCRDRLH 85
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 20/70 (28%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGGKA 63
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 20 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHK 79
Query: 64 VAKFCAKYLH 73
VA +C LH
Sbjct: 80 VADYCRDRLH 89
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence
Of Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence
Of Abscisic Acid (Aba)
Length = 340
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 20/70 (28%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGGKA 63
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 19 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHK 78
Query: 64 VAKFCAKYLH 73
VA +C LH
Sbjct: 79 VADYCRDRLH 88
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 20 ENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVL 77
ENV G +S G R ED + L +F VYDGHGG A A FC ++ + ++
Sbjct: 8 ENV--GCASQIGKRKENED-RFDFAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIM 62
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 20 ENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVL 77
ENV G +S G R ED + L +F VYDGHGG A A FC ++ + ++
Sbjct: 122 ENV--GCASQIGKRKENED-RFDFAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIM 176
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 16 DGQNENVRYGLSSMQ-GWRATMEDAHAAYPDLDSSTSFFGVYDGHGG----KAVAKFCAK 70
DG+N + G S Q A +ED +A L + GV+DGH G +AV++
Sbjct: 31 DGKNVSSVLGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFY 90
Query: 71 YLHQQVLKHEIYSAGDLVTSAQKAFL 96
Y+ +L HE + + +A L
Sbjct: 91 YIAVSLLPHETLLEIENAVESGRALL 116
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 16 DGQNENVRYGLSSMQ-GWRATMEDAHAAYPDLDSSTSFFGVYDGHGG----KAVAKFCAK 70
DG+N + G S + A +ED +A L + GV+DGH G +AV++
Sbjct: 31 DGKNVSSILGFDSNRLPANAPIEDRRSATTCLQTRGMLLGVFDGHAGCACSQAVSERLFY 90
Query: 71 YLHQQVLKHEIYSAGDLVTSAQKAFL 96
Y+ +L HE + + +A L
Sbjct: 91 YIAVSLLPHETLLEIENAVESGRALL 116
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 31 GWRATMEDAHAAYPDLDS--STSFFGVYDGHGGKAVAKFCAKYLHQQVLK 78
G R T EDA S + V+DGH G+A +++CAK+ + + K
Sbjct: 22 GRRPTDEDAILVSAPATSRPNVRIKAVFDGHAGEATSQYCAKHAAKHLGK 71
>pdb|3BS6|A Chain A, 1.8 Angstrom Crystal Structure Of The Periplasmic Domain
Of The Membrane Insertase Yidc
pdb|3BS6|B Chain B, 1.8 Angstrom Crystal Structure Of The Periplasmic Domain
Of The Membrane Insertase Yidc
Length = 280
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 2 GVYLSTP--KTEKFSEDGQNENVRYGLSSMQGWRATMED--AHAAYPDLDSSTSFFGVYD 57
G STP K EK+ D +N +SS GW A ++ A A P D + +F+
Sbjct: 165 GAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAXLQQYFATAWIPHNDGTNNFYTANL 224
Query: 58 GHGGKAVAKFCAKYLHQQVL 77
G+G A+ Y Q VL
Sbjct: 225 GNGIAAIG-----YKSQPVL 239
>pdb|3NG0|A Chain A, Crystal Structure Of Glutamine Synthetase From
Synechocystis Sp. Pcc 6803
Length = 473
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 11 EKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSST 50
++ E+ E + + SS++GW+A E PD +++T
Sbjct: 39 DQLDENSFTEGIPFDGSSIRGWKAINESDMCMVPDPNTAT 78
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 8 PKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKF 67
P+ + FSED N GLS W LD G+YD G V++F
Sbjct: 408 PEAKAFSEDMVRRNSAGGLSYGWNW-------------LDQGVGIDGIYDLASGSRVSRF 454
Query: 68 C 68
Sbjct: 455 A 455
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,051,485
Number of Sequences: 62578
Number of extensions: 110183
Number of successful extensions: 262
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 22
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)