Query 034344
Match_columns 97
No_of_seqs 152 out of 1056
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 12:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0699 Serine/threonine prote 99.9 3.3E-27 7.1E-32 172.0 6.2 96 1-96 1-96 (542)
2 KOG0697 Protein phosphatase 1B 99.9 2.5E-26 5.4E-31 162.6 6.5 97 1-97 1-107 (379)
3 PTZ00224 protein phosphatase 2 99.8 2.8E-19 6.1E-24 132.1 10.0 77 1-79 1-77 (381)
4 KOG0698 Serine/threonine prote 99.7 3.6E-17 7.7E-22 118.9 9.5 74 23-96 41-123 (330)
5 PLN03145 Protein phosphatase 2 99.7 5E-17 1.1E-21 119.7 9.1 76 20-96 63-148 (365)
6 PF00481 PP2C: Protein phospha 99.6 2.8E-16 6.1E-21 109.9 3.6 74 23-96 1-80 (254)
7 KOG0700 Protein phosphatase 2C 99.3 1.1E-11 2.4E-16 91.4 5.8 43 35-77 84-126 (390)
8 smart00332 PP2Cc Serine/threon 99.2 2.1E-10 4.6E-15 79.1 9.2 76 21-96 5-83 (255)
9 cd00143 PP2Cc Serine/threonine 99.2 1.4E-10 3.1E-15 79.5 7.5 74 23-96 2-80 (254)
10 COG0631 PTC1 Serine/threonine 99.0 1.3E-09 2.8E-14 77.2 7.9 74 23-96 10-89 (262)
11 PRK14559 putative protein seri 98.9 3.9E-09 8.4E-14 82.8 7.8 74 21-95 374-462 (645)
12 PF13672 PP2C_2: Protein phosp 97.1 0.001 2.2E-08 44.8 4.7 51 28-80 4-58 (212)
13 KOG1323 Serine/threonine phosp 96.6 0.0033 7.2E-08 46.7 4.2 30 49-78 143-172 (493)
14 smart00331 PP2C_SIG Sigma fact 96.2 0.027 5.7E-07 37.4 6.5 56 35-92 16-71 (193)
15 KOG0618 Serine/threonine phosp 95.3 0.029 6.3E-07 46.4 4.6 76 21-97 521-597 (1081)
16 KOG1379 Serine/threonine prote 88.7 2.1 4.5E-05 31.7 6.1 60 35-96 90-156 (330)
17 PF12953 DUF3842: Domain of un 49.3 13 0.00028 24.0 1.7 22 53-74 2-26 (131)
18 TIGR02352 thiamin_ThiO glycine 46.1 32 0.00069 24.2 3.5 44 29-72 285-333 (337)
19 cd02039 cytidylyltransferase_l 44.6 20 0.00044 21.9 2.1 22 51-72 3-26 (143)
20 TIGR00067 glut_race glutamate 38.3 21 0.00044 25.2 1.5 23 53-75 1-24 (251)
21 PF10380 CRF1: Transcription f 38.2 58 0.0013 20.8 3.4 43 17-64 20-62 (123)
22 PRK10319 N-acetylmuramoyl-l-al 36.0 16 0.00035 26.5 0.7 8 55-62 60-68 (287)
23 COG0196 RibF FAD synthase [Coe 35.2 21 0.00045 26.3 1.1 16 48-63 16-32 (304)
24 PF14808 TMEM164: TMEM164 fami 34.5 17 0.00037 26.0 0.6 21 56-76 13-35 (252)
25 PRK00865 glutamate racemase; P 33.6 32 0.0007 24.2 1.9 24 52-75 7-31 (261)
26 PF00562 RNA_pol_Rpb2_6: RNA p 33.5 25 0.00055 26.4 1.4 25 19-45 78-102 (386)
27 PF08252 Leader_CPA1: arg-2/CP 33.1 54 0.0012 14.8 1.9 13 63-75 9-21 (24)
28 PLN02388 phosphopantetheine ad 31.1 30 0.00065 23.4 1.3 16 49-64 21-37 (177)
29 KOG4398 Predicted coiled-coil 30.8 20 0.00043 26.4 0.4 24 55-78 136-173 (359)
30 PRK07143 hypothetical protein; 30.5 19 0.00041 26.0 0.3 15 50-64 18-33 (279)
31 COG1402 Uncharacterized protei 30.1 78 0.0017 22.6 3.3 28 50-77 104-132 (250)
32 PF01693 Cauli_VI: Caulimoviru 29.9 40 0.00087 17.1 1.4 9 52-60 2-10 (44)
33 PRK11259 solA N-methyltryptoph 29.4 83 0.0018 22.6 3.5 45 28-72 308-357 (376)
34 PF02633 Creatininase: Creatin 28.9 1.1E+02 0.0023 21.1 3.8 27 49-75 99-126 (237)
35 KOG4530 Predicted flavoprotein 27.7 94 0.002 21.2 3.2 25 49-73 119-143 (199)
36 COG0796 MurI Glutamate racemas 26.9 58 0.0013 23.6 2.2 25 51-75 6-31 (269)
37 CHL00001 rpoB RNA polymerase b 26.6 58 0.0013 28.1 2.5 42 3-46 636-677 (1070)
38 PF00733 Asn_synthase: Asparag 25.7 35 0.00075 22.9 0.9 12 54-65 123-134 (255)
39 CHL00207 rpoB RNA polymerase b 25.7 60 0.0013 28.1 2.4 43 2-46 630-672 (1077)
40 TIGR02013 rpoB DNA-directed RN 25.4 1.1E+02 0.0024 26.5 3.8 26 19-46 674-699 (1065)
41 TIGR03175 AllD ureidoglycolate 23.7 1.6E+02 0.0034 22.1 4.1 30 49-78 72-103 (349)
42 PF05002 SGS: SGS domain ; In 23.5 1.5E+02 0.0032 17.5 3.2 26 69-97 26-51 (82)
43 TIGR02865 spore_II_E stage II 23.1 4E+02 0.0087 22.1 6.6 36 30-66 561-597 (764)
44 PF02615 Ldh_2: Malate/L-lacta 21.4 1.3E+02 0.0029 22.3 3.3 29 50-78 73-103 (335)
45 PLN00105 malate/L-lactate dehy 21.3 1.9E+02 0.0041 21.5 4.1 30 49-78 61-92 (330)
46 KOG0681 Actin-related protein 20.8 1.9E+02 0.0041 23.5 4.1 59 16-74 142-215 (645)
47 PRK00405 rpoB DNA-directed RNA 20.0 2E+02 0.0043 25.1 4.4 26 19-46 716-741 (1112)
No 1
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=3.3e-27 Score=171.97 Aligned_cols=96 Identities=55% Similarity=0.920 Sum_probs=93.1
Q ss_pred CCCCCCCCceeeeeecCCCCceEEEEEecccCCCCCceeEEeccCCCCCceEEEEEeCCCchHHHHHHHHHHHHHHHhcc
Q 034344 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHE 80 (97)
Q Consensus 1 m~~~~~~p~~~k~~~~~~~~~~~~g~~~~~G~R~~mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~~ 80 (97)
||.||+.|.|.|....+-++-+.||.++|||||-.|||+|-++.+++.++++|+|||||||.+||.||+..||.+|.+..
T Consensus 1 MGAYLs~P~t~K~s~dg~g~lL~yg~s~MQGWRvsqEDAHNci~~ld~~t~mF~VYDGHGG~EVa~yca~kLPdflK~~k 80 (542)
T KOG0699|consen 1 MGAYLSKPITEKESEDGSGNLLSYGCSTMQGWRVSQEDAHNCIVDLDTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKERK 80 (542)
T ss_pred CcccccCCccccccccccCccchhchhhhhccccchhhhhcccccccCcceEEEEecCCCcHHHHHHHHHhhhHHHHhHH
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCcHHHHHHHHHc
Q 034344 81 IYSAGDLVTSAQKAFL 96 (97)
Q Consensus 81 ~~~~~~~~~al~~aF~ 96 (97)
.+...++..||++||+
T Consensus 81 ~yk~g~~~~aL~~AFl 96 (542)
T KOG0699|consen 81 FYKAGDVAEALQKAFL 96 (542)
T ss_pred hhhcccHHHHHHHHHh
Confidence 8888999999999997
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.93 E-value=2.5e-26 Score=162.57 Aligned_cols=97 Identities=45% Similarity=0.848 Sum_probs=88.4
Q ss_pred CCCCCCCCceeeeeecCCCCceEEEEEecccCCCCCceeEEeccCCCC---CceEEEEEeCCCchHHHHHHHHHHHHHHH
Q 034344 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDS---STSFFGVYDGHGGKAVAKFCAKYLHQQVL 77 (97)
Q Consensus 1 m~~~~~~p~~~k~~~~~~~~~~~~g~~~~~G~R~~mED~~~~~~~~~~---~~~~fgVfDGHgG~~~a~~~~~~L~~~i~ 77 (97)
||-+|.+|.|+|.-..++.+.++||.+||||||-.|||+|+....++. +|+||||||||.|+.+|++|++||.++|.
T Consensus 1 MGaFLdKPkteKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~ 80 (379)
T KOG0697|consen 1 MGAFLDKPKTEKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHII 80 (379)
T ss_pred CCccccCcccccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999988776654 99999999999999999999999999998
Q ss_pred hccccCC----C---cHHHHHHHHHcC
Q 034344 78 KHEIYSA----G---DLVTSAQKAFLR 97 (97)
Q Consensus 78 ~~~~~~~----~---~~~~al~~aF~~ 97 (97)
.+..|.. . +++.-|+.+|++
T Consensus 81 sse~F~~~~k~gsv~~~~~GIrtGFL~ 107 (379)
T KOG0697|consen 81 SSEEFRGMTKNGSVENVEKGIRTGFLS 107 (379)
T ss_pred hhHHHhhhccCCcHHHHHhhHhhccee
Confidence 8766542 3 788899999975
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.80 E-value=2.8e-19 Score=132.11 Aligned_cols=77 Identities=32% Similarity=0.572 Sum_probs=70.0
Q ss_pred CCCCCCCCceeeeeecCCCCceEEEEEecccCCCCCceeEEeccCCCCCceEEEEEeCCCchHHHHHHHHHHHHHHHhc
Q 034344 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKH 79 (97)
Q Consensus 1 m~~~~~~p~~~k~~~~~~~~~~~~g~~~~~G~R~~mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~ 79 (97)
||+.|++|...|.+....+..+.+|.++++|+|++|||++++.. ..+..+|||||||+|..||+|++++|+..+...
T Consensus 1 mg~~l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~--~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~ 77 (381)
T PTZ00224 1 MGIMLPKPVLSKLVDRAGNSIFRCASACVNGYRESMEDAHLLYL--TDDWGFFGVFDGHVNDECSQYLARAWPQALEKE 77 (381)
T ss_pred CCccCCCCccccccccCCCccEEEEEEeCCCCCCCCCCeeEecc--CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987653 235679999999999999999999999887643
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.72 E-value=3.6e-17 Score=118.92 Aligned_cols=74 Identities=43% Similarity=0.738 Sum_probs=64.4
Q ss_pred EEEEEecccCCCCCceeEEeccCCC------C-CceEEEEEeCCCchHHHHHHHHHHHHHHHhccccCCC--cHHHHHHH
Q 034344 23 RYGLSSMQGWRATMEDAHAAYPDLD------S-STSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAG--DLVTSAQK 93 (97)
Q Consensus 23 ~~g~~~~~G~R~~mED~~~~~~~~~------~-~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~~~~~~~--~~~~al~~ 93 (97)
..+.++.+|+|+.|||.+....++. . +.+||||||||||+.||+|++++||..|.++..+... .+++++++
T Consensus 41 ~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 41 LGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred ceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 4555589999999999999987754 1 5899999999999999999999999999998877643 48999999
Q ss_pred HHc
Q 034344 94 AFL 96 (97)
Q Consensus 94 aF~ 96 (97)
+|+
T Consensus 121 ~F~ 123 (330)
T KOG0698|consen 121 AFL 123 (330)
T ss_pred HHH
Confidence 997
No 5
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.71 E-value=5e-17 Score=119.67 Aligned_cols=76 Identities=32% Similarity=0.533 Sum_probs=64.9
Q ss_pred CceEEEEEecccCCCCCceeEEeccCCC----------CCceEEEEEeCCCchHHHHHHHHHHHHHHHhccccCCCcHHH
Q 034344 20 ENVRYGLSSMQGWRATMEDAHAAYPDLD----------SSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVT 89 (97)
Q Consensus 20 ~~~~~g~~~~~G~R~~mED~~~~~~~~~----------~~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~~~~~~~~~~~ 89 (97)
+.+++|..+.+|.|++|||++++.+++. .+..||||||||||+.+++|++++|+..|.+...+. .++++
T Consensus 63 ~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~-~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFP-REIEK 141 (365)
T ss_pred CceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccc-hhHHH
Confidence 5579999999999999999998876542 246899999999999999999999999998765553 57888
Q ss_pred HHHHHHc
Q 034344 90 SAQKAFL 96 (97)
Q Consensus 90 al~~aF~ 96 (97)
+|++||.
T Consensus 142 al~~af~ 148 (365)
T PLN03145 142 VVSSAFL 148 (365)
T ss_pred HHHHHHH
Confidence 8888885
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.62 E-value=2.8e-16 Score=109.87 Aligned_cols=74 Identities=38% Similarity=0.718 Sum_probs=64.5
Q ss_pred EEEEEecccCCCCCceeEEeccCCC-----CCceEEEEEeCCCchHHHHHHHHHHHHHHHhccccCCC-cHHHHHHHHHc
Q 034344 23 RYGLSSMQGWRATMEDAHAAYPDLD-----SSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAG-DLVTSAQKAFL 96 (97)
Q Consensus 23 ~~g~~~~~G~R~~mED~~~~~~~~~-----~~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~~~~~~~-~~~~al~~aF~ 96 (97)
.+|..+++|+|++|||.+.+..++. .+..+|||||||||..+|+|++++|+..|.+....... ++.++|+++|.
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~ 80 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFL 80 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceee
Confidence 4799999999999999999988663 38899999999999999999999999888776555434 78999999986
No 7
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.25 E-value=1.1e-11 Score=91.39 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=37.3
Q ss_pred CCceeEEeccCCCCCceEEEEEeCCCchHHHHHHHHHHHHHHH
Q 034344 35 TMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVL 77 (97)
Q Consensus 35 ~mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~~~L~~~i~ 77 (97)
.-||+..+.....+++.|+||||||||++||+|+.+||+.+|.
T Consensus 84 ~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~ 126 (390)
T KOG0700|consen 84 AEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVA 126 (390)
T ss_pred cccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHH
Confidence 4567666666667799999999999999999999999999987
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.18 E-value=2.1e-10 Score=79.08 Aligned_cols=76 Identities=51% Similarity=0.798 Sum_probs=61.5
Q ss_pred ceEEEEEecccCCCCCceeEEeccCCCCCceEEEEEeCCCchHHHHHHHHHHHHHHHhccccCC---CcHHHHHHHHHc
Q 034344 21 NVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSA---GDLVTSAQKAFL 96 (97)
Q Consensus 21 ~~~~g~~~~~G~R~~mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~~~~~~---~~~~~al~~aF~ 96 (97)
.+.+|.++.+|.|..+||++.+..+...+..+|+|+|||||..+|+++.+.+...+........ ..+.+.|+++|.
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFL 83 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHH
Confidence 4678888899999999999988765556889999999999999999999999988876543322 247777777764
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.16 E-value=1.4e-10 Score=79.54 Aligned_cols=74 Identities=38% Similarity=0.605 Sum_probs=58.8
Q ss_pred EEEEEecccCCCCCceeEEeccCCC-CCceEEEEEeCCCchHHHHHHHHHHHHHHHhccccC----CCcHHHHHHHHHc
Q 034344 23 RYGLSSMQGWRATMEDAHAAYPDLD-SSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYS----AGDLVTSAQKAFL 96 (97)
Q Consensus 23 ~~g~~~~~G~R~~mED~~~~~~~~~-~~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~~~~~----~~~~~~al~~aF~ 96 (97)
.++.++.+|.|+.|||++.+..... .+..+|+|+|||||...++++++.+...+....... ...+...|+++|.
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 80 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFL 80 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 5788899999999999998765432 367999999999999999999999999887754332 3566677777764
No 10
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.03 E-value=1.3e-09 Score=77.23 Aligned_cols=74 Identities=26% Similarity=0.285 Sum_probs=53.2
Q ss_pred EEEEEecccCCCCCceeEEeccCCCCC-ceEEEEEeCCCchHHHHHHHHHHHHHHHhcccc---CCCc--HHHHHHHHHc
Q 034344 23 RYGLSSMQGWRATMEDAHAAYPDLDSS-TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIY---SAGD--LVTSAQKAFL 96 (97)
Q Consensus 23 ~~g~~~~~G~R~~mED~~~~~~~~~~~-~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~~~~---~~~~--~~~al~~aF~ 96 (97)
..+.+...++|..|||++.+..+...+ ..||+|||||||+.+++++++.+.+.|.+.... .... +++.|.+++.
T Consensus 10 ~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 89 (262)
T COG0631 10 VAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAIL 89 (262)
T ss_pred eeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 344555556788999999887643322 579999999999999999999999998765221 1111 5677776654
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=98.93 E-value=3.9e-09 Score=82.79 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=50.7
Q ss_pred ceEEEEEecccC-CCCCceeEEeccCC-----C-----CCceEEEEEeCCCchH----HHHHHHHHHHHHHHhccccCCC
Q 034344 21 NVRYGLSSMQGW-RATMEDAHAAYPDL-----D-----SSTSFFGVYDGHGGKA----VAKFCAKYLHQQVLKHEIYSAG 85 (97)
Q Consensus 21 ~~~~g~~~~~G~-R~~mED~~~~~~~~-----~-----~~~~~fgVfDGHgG~~----~a~~~~~~L~~~i~~~~~~~~~ 85 (97)
.+.++..+.+|. |+.|||++.+..++ + ....+|+|+|||||+. ||+++.+.|...+....... .
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~-~ 452 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDE-L 452 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccc-c
Confidence 377888999996 99999998765432 1 1357999999999775 67788888887776432211 1
Q ss_pred cHHHHHHHHH
Q 034344 86 DLVTSAQKAF 95 (97)
Q Consensus 86 ~~~~al~~aF 95 (97)
..++.|+++|
T Consensus 453 ~~~~~L~~ai 462 (645)
T PRK14559 453 PDEETIREAI 462 (645)
T ss_pred cHHHHHHHHH
Confidence 2344455544
No 12
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=97.12 E-value=0.001 Score=44.84 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=30.5
Q ss_pred ecccCCCCCceeEEeccCCCCCceEEEEEeCCCchHH----HHHHHHHHHHHHHhcc
Q 034344 28 SMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAV----AKFCAKYLHQQVLKHE 80 (97)
Q Consensus 28 ~~~G~R~~mED~~~~~~~~~~~~~~fgVfDGHgG~~~----a~~~~~~L~~~i~~~~ 80 (97)
+.+|.|+.+||++.+.. ..+..+++|.||+||... |..+.+.+...+....
T Consensus 4 sh~~~~~~nqD~~~~~~--~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~ 58 (212)
T PF13672_consen 4 SHRGRGAPNQDAFGIRT--DDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLL 58 (212)
T ss_dssp ---TTSSS--EEEEEE---TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCCCCCCCEEeee--CCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcc
Confidence 45788899999998443 245567799999996554 5555555555555443
No 13
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=96.60 E-value=0.0033 Score=46.72 Aligned_cols=30 Identities=33% Similarity=0.746 Sum_probs=26.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHHHh
Q 034344 49 STSFFGVYDGHGGKAVAKFCAKYLHQQVLK 78 (97)
Q Consensus 49 ~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~ 78 (97)
+.++|.+||||.|+.+|--+++-|+.+|.+
T Consensus 143 ~~~~~slfdghags~~avvAsrll~~hI~~ 172 (493)
T KOG1323|consen 143 DGALFSLFDGHAGSAVAVVASRLLHRHIKE 172 (493)
T ss_pred cceeeeeecCCCcchHHHHHHHHHHHhhhH
Confidence 789999999999999999999888888754
No 14
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=96.22 E-value=0.027 Score=37.36 Aligned_cols=56 Identities=11% Similarity=-0.027 Sum_probs=36.4
Q ss_pred CCceeEEeccCCCCCceEEEEEeCCCchHHHHHHHHHHHHHHHhccccCCCcHHHHHH
Q 034344 35 TMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQ 92 (97)
Q Consensus 35 ~mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~~~~~~~~~~~al~ 92 (97)
-..|.+-+.. .+++..+|+|+||||+...|.+++..+...+....... ..+.++++
T Consensus 16 ~~GD~~~~~~-~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~-~~~~~~l~ 71 (193)
T smart00331 16 VGGDFYDVVK-LPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG-ISLSQILE 71 (193)
T ss_pred cCccEEEEEE-eCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC-CCHHHHHH
Confidence 3556664432 23457899999999988888888888877776543322 34555444
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.35 E-value=0.029 Score=46.42 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=58.6
Q ss_pred ceEEEEEecccCCCCCceeEEeccCC-CCCceEEEEEeCCCchHHHHHHHHHHHHHHHhccccCCCcHHHHHHHHHcC
Q 034344 21 NVRYGLSSMQGWRATMEDAHAAYPDL-DSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEIYSAGDLVTSAQKAFLR 97 (97)
Q Consensus 21 ~~~~g~~~~~G~R~~mED~~~~~~~~-~~~~~~fgVfDGHgG~~~a~~~~~~L~~~i~~~~~~~~~~~~~al~~aF~~ 97 (97)
-++||++.+.|.|...=-+.....++ .++.+.||+|||-+...+...++..+-..+.++.+.. ++-++-|+.+|++
T Consensus 521 ~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~-~~et~~mr~~fl~ 597 (1081)
T KOG0618|consen 521 LWTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLY-GNETEQMRNTFLR 597 (1081)
T ss_pred heeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHH
Confidence 47899999999997654443333443 4588999999999999999999999999998876664 4444458888874
No 16
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=88.66 E-value=2.1 Score=31.70 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=40.4
Q ss_pred CCceeEEeccCCCCCceEEEEEeCCCch-----HHHHHHHHHHHH--HHHhccccCCCcHHHHHHHHHc
Q 034344 35 TMEDAHAAYPDLDSSTSFFGVYDGHGGK-----AVAKFCAKYLHQ--QVLKHEIYSAGDLVTSAQKAFL 96 (97)
Q Consensus 35 ~mED~~~~~~~~~~~~~~fgVfDGHgG~-----~~a~~~~~~L~~--~i~~~~~~~~~~~~~al~~aF~ 96 (97)
.-||+|.+-.+ ....+.||.||=||. +.+.|.++-+-. .+..+..+...++...|..||-
T Consensus 90 ~GEDa~Fvss~--~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~ 156 (330)
T KOG1379|consen 90 GGEDAWFVSSN--PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYA 156 (330)
T ss_pred CCCcceeeccC--cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHH
Confidence 67888877543 466899999999954 566665554422 2333444545688999988874
No 17
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=49.34 E-value=13 Score=24.04 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=17.1
Q ss_pred EEEEeCCC---chHHHHHHHHHHHH
Q 034344 53 FGVYDGHG---GKAVAKFCAKYLHQ 74 (97)
Q Consensus 53 fgVfDGHg---G~~~a~~~~~~L~~ 74 (97)
.+|.||.| |....+.+++.+++
T Consensus 2 I~VIDGQGGGiG~~iv~~lr~~~~~ 26 (131)
T PF12953_consen 2 IAVIDGQGGGIGKQIVEKLRKELPE 26 (131)
T ss_pred EEEEeCCCChhHHHHHHHHHHhCCC
Confidence 47999999 56777777777776
No 18
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=46.10 E-value=32 Score=24.19 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=27.6
Q ss_pred cccCCCCCceeEEeccCCCC--CceEEEEEeCCC---chHHHHHHHHHH
Q 034344 29 MQGWRATMEDAHAAYPDLDS--STSFFGVYDGHG---GKAVAKFCAKYL 72 (97)
Q Consensus 29 ~~G~R~~mED~~~~~~~~~~--~~~~fgVfDGHg---G~~~a~~~~~~L 72 (97)
+.|.|+..-|...++...+. +..+.+-|=||| |..+++.+++.+
T Consensus 285 ~~g~r~~t~D~~piig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i 333 (337)
T TIGR02352 285 WAGLRPGTPDNLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLI 333 (337)
T ss_pred eecCCCCCCCCCCEeCccCCCCCEEEEcccccCceehhhHHHHHHHHHH
Confidence 45677777776655554433 566666666666 667777666654
No 19
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=44.61 E-value=20 Score=21.92 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=15.3
Q ss_pred eEEEEEeC-CCch-HHHHHHHHHH
Q 034344 51 SFFGVYDG-HGGK-AVAKFCAKYL 72 (97)
Q Consensus 51 ~~fgVfDG-HgG~-~~a~~~~~~L 72 (97)
.+.|-||+ |-|+ ...+.+.+..
T Consensus 3 ~~~G~Fdp~H~GH~~ll~~a~~~~ 26 (143)
T cd02039 3 IIIGRFEPFHLGHLKLIKEALEEA 26 (143)
T ss_pred EEeeccCCcCHHHHHHHHHHHHHc
Confidence 46799999 9999 4445555544
No 20
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=38.27 E-value=21 Score=25.20 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=19.7
Q ss_pred EEEEe-CCCchHHHHHHHHHHHHH
Q 034344 53 FGVYD-GHGGKAVAKFCAKYLHQQ 75 (97)
Q Consensus 53 fgVfD-GHgG~~~a~~~~~~L~~~ 75 (97)
.|||| |=||-.+.+.+++.+|..
T Consensus 1 IgvfDSGiGGltv~~~l~~~~p~~ 24 (251)
T TIGR00067 1 IGVFDSGVGGLSVLKEIRKQLPKE 24 (251)
T ss_pred CEEEeCCccHHHHHHHHHHHCCCC
Confidence 38898 788999999999999765
No 21
>PF10380 CRF1: Transcription factor CRF1; InterPro: IPR018837 CRF1 is a transcription factor that co-represses ribosomal genes with FHL1 via the TOR signalling pathway and protein kinase A [].
Probab=38.17 E-value=58 Score=20.84 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=28.3
Q ss_pred CCCCceEEEEEecccCCCCCceeEEeccCCCCCceEEEEEeCCCchHH
Q 034344 17 GQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAV 64 (97)
Q Consensus 17 ~~~~~~~~g~~~~~G~R~~mED~~~~~~~~~~~~~~fgVfDGHgG~~~ 64 (97)
+....-.+=.+...|+||.+==.|+.. +.--|||.||=.-...
T Consensus 20 ~~~kAkEVlSSn~~~~rPP~LGtWv~~-----d~KPFgIIDGlSTrSL 62 (123)
T PF10380_consen 20 GSKKAKEVLSSNTADYRPPVLGTWVTT-----DSKPFGIIDGLSTRSL 62 (123)
T ss_pred cCccceeeeccccCCCCCCeeeeeecc-----CCccceeeccccceec
Confidence 444455666667889999876555433 3356999999764433
No 22
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=36.05 E-value=16 Score=26.46 Aligned_cols=8 Identities=63% Similarity=1.248 Sum_probs=5.6
Q ss_pred EEe-CCCch
Q 034344 55 VYD-GHGGK 62 (97)
Q Consensus 55 VfD-GHgG~ 62 (97)
|.| ||||.
T Consensus 60 vIDpGHGG~ 68 (287)
T PRK10319 60 MLDPGHGGI 68 (287)
T ss_pred EEECCCCCC
Confidence 456 99974
No 23
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=35.19 E-value=21 Score=26.26 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=12.8
Q ss_pred CCceEEEEEeC-CCchH
Q 034344 48 SSTSFFGVYDG-HGGKA 63 (97)
Q Consensus 48 ~~~~~fgVfDG-HgG~~ 63 (97)
......|.||| |-|+.
T Consensus 16 ~~~l~IG~FDGvHlGHq 32 (304)
T COG0196 16 GCVLTIGNFDGVHLGHQ 32 (304)
T ss_pred CcEEEEEcCCccchhHH
Confidence 35667899999 77987
No 24
>PF14808 TMEM164: TMEM164 family
Probab=34.54 E-value=17 Score=26.03 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=15.6
Q ss_pred EeCCCchHHHHHHH--HHHHHHH
Q 034344 56 YDGHGGKAVAKFCA--KYLHQQV 76 (97)
Q Consensus 56 fDGHgG~~~a~~~~--~~L~~~i 76 (97)
+.|.||++|++|+. +++.+.+
T Consensus 13 ~~gngGpeC~~fLs~~qr~~Et~ 35 (252)
T PF14808_consen 13 IPGNGGPECANFLSPRQRIIETL 35 (252)
T ss_pred CCCCCChhhhHhCCHHHHHHHHH
Confidence 47999999999985 4444443
No 25
>PRK00865 glutamate racemase; Provisional
Probab=33.64 E-value=32 Score=24.24 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEEe-CCCchHHHHHHHHHHHHH
Q 034344 52 FFGVYD-GHGGKAVAKFCAKYLHQQ 75 (97)
Q Consensus 52 ~fgVfD-GHgG~~~a~~~~~~L~~~ 75 (97)
-+|||| |=||=.+.+.+++.||.+
T Consensus 7 ~IgvfDSGiGGLtvl~~i~~~lp~~ 31 (261)
T PRK00865 7 PIGVFDSGVGGLTVLREIRRLLPDE 31 (261)
T ss_pred eEEEEECCccHHHHHHHHHHHCCCC
Confidence 479999 788999999999999775
No 26
>PF00562 RNA_pol_Rpb2_6: RNA polymerase Rpb2, domain 6; InterPro: IPR007120 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerases (2.7.7.6 from EC) catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain represents the hybrid-binding domain and the wall domain []. The hybrid-binding domain binds the nascent RNA strand/template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion []. This domain is also involved in binding to Rpb1 and Rpb3 []. Many of the bacterial members contain large insertions within this domain, which are known as dispensable region 2 (DRII).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2Y0S_R 3HKZ_B 2PMZ_R 3H0G_B 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B ....
Probab=33.48 E-value=25 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=19.8
Q ss_pred CCceEEEEEecccCCCCCceeEEeccC
Q 034344 19 NENVRYGLSSMQGWRATMEDAHAAYPD 45 (97)
Q Consensus 19 ~~~~~~g~~~~~G~R~~mED~~~~~~~ 45 (97)
...+.+++.++.|| +|||+.++-..
T Consensus 78 G~N~iVAvmsy~GY--N~EDAiIiNks 102 (386)
T PF00562_consen 78 GQNAIVAVMSYTGY--NQEDAIIINKS 102 (386)
T ss_dssp SEEEEEEESBSSST--TTSSEEEEECH
T ss_pred eeeeeEEeeehhcc--cchhhhhhhhh
Confidence 44578899999997 89999987543
No 27
>PF08252 Leader_CPA1: arg-2/CPA1 leader peptide ; InterPro: IPR013203 In this family there are leaders peptides involved in the regulation of the glutaminase subunit (small subunit) of arginine-specific carbamoyl phosphate synthetase. In Neurospora crassa it is a small upstream ORF of 24 codons above the arg-2 locus []. In yeast it is the leader peptide of the CPA1 gene. The 5' region of CPA1 mRNA contains a 25 codon upstream open reading frame. The leader peptide, the product of the upstream open reading frame, plays an essential, negative role in the specific repression of CPA1 by arginine [].; PDB: 2XL1_A.
Probab=33.14 E-value=54 Score=14.75 Aligned_cols=13 Identities=0% Similarity=0.171 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 034344 63 AVAKFCAKYLHQQ 75 (97)
Q Consensus 63 ~~a~~~~~~L~~~ 75 (97)
.+.+|+++++++.
T Consensus 9 t~qDYiSDhiWk~ 21 (24)
T PF08252_consen 9 TSQDYISDHIWKA 21 (24)
T ss_dssp --HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 4678899988875
No 28
>PLN02388 phosphopantetheine adenylyltransferase
Probab=31.10 E-value=30 Score=23.40 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=12.4
Q ss_pred CceEEEEEeC-CCchHH
Q 034344 49 STSFFGVYDG-HGGKAV 64 (97)
Q Consensus 49 ~~~~fgVfDG-HgG~~~ 64 (97)
.....|-||| |-|+..
T Consensus 21 ~Vv~gGtFDgLH~GHq~ 37 (177)
T PLN02388 21 AVVLGGTFDRLHDGHRL 37 (177)
T ss_pred eEEEEecCCccCHHHHH
Confidence 4678899999 779854
No 29
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.80 E-value=20 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=15.7
Q ss_pred EEeCCCchHH--------------HHHHHHHHHHHHHh
Q 034344 55 VYDGHGGKAV--------------AKFCAKYLHQQVLK 78 (97)
Q Consensus 55 VfDGHgG~~~--------------a~~~~~~L~~~i~~ 78 (97)
|||||+|+++ -+|.+-.++..+.+
T Consensus 136 v~~~~~~~~i~~~i~gp~~slp~ngdY~ay~~w~~~~k 173 (359)
T KOG4398|consen 136 VCDDHMSDKINFIIPGPTQSLPINGDYIAYKLWAKLAK 173 (359)
T ss_pred EEcCCCCcceeEEecCCcccccCCCchHHHHHHHhhhh
Confidence 8999998544 25666666655544
No 30
>PRK07143 hypothetical protein; Provisional
Probab=30.50 E-value=19 Score=26.03 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=11.5
Q ss_pred ceEEEEEeC-CCchHH
Q 034344 50 TSFFGVYDG-HGGKAV 64 (97)
Q Consensus 50 ~~~fgVfDG-HgG~~~ 64 (97)
..-+|.||| |-|+..
T Consensus 18 vvaiG~FDGvH~GHq~ 33 (279)
T PRK07143 18 TFVLGGFESFHLGHLE 33 (279)
T ss_pred EEEEccCCcCCHHHHH
Confidence 456799999 779843
No 31
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=30.11 E-value=78 Score=22.61 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCchHHH-HHHHHHHHHHHH
Q 034344 50 TSFFGVYDGHGGKAVA-KFCAKYLHQQVL 77 (97)
Q Consensus 50 ~~~fgVfDGHgG~~~a-~~~~~~L~~~i~ 77 (97)
..=|-+..||||..++ .-+.+.|...+-
T Consensus 104 frk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 104 FRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 3346678999999776 667776666553
No 32
>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []. This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.
Probab=29.91 E-value=40 Score=17.11 Aligned_cols=9 Identities=22% Similarity=1.021 Sum_probs=7.2
Q ss_pred EEEEEeCCC
Q 034344 52 FFGVYDGHG 60 (97)
Q Consensus 52 ~fgVfDGHg 60 (97)
||+|++|+.
T Consensus 2 ~YaV~~G~~ 10 (44)
T PF01693_consen 2 YYAVFNGRQ 10 (44)
T ss_dssp EEEEECSSS
T ss_pred EEEEEeCCC
Confidence 678888887
No 33
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=29.43 E-value=83 Score=22.61 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=26.9
Q ss_pred ecccCCCCCceeEEeccCCCC--CceEEEEEeCCC---chHHHHHHHHHH
Q 034344 28 SMQGWRATMEDAHAAYPDLDS--STSFFGVYDGHG---GKAVAKFCAKYL 72 (97)
Q Consensus 28 ~~~G~R~~mED~~~~~~~~~~--~~~~fgVfDGHg---G~~~a~~~~~~L 72 (97)
.+.|.|+..-|...++...+. +..+.+=|-||| +..+++.+++.+
T Consensus 308 ~~~g~~~~t~D~~P~ig~~~~~~gl~~~~G~~g~G~~~ap~~g~~la~li 357 (376)
T PRK11259 308 GAACTYTNTPDEHFIIDTLPGHPNVLVASGCSGHGFKFASVLGEILADLA 357 (376)
T ss_pred ceEEecccCCCCCceeecCCCCCCEEEEecccchhhhccHHHHHHHHHHH
Confidence 355677777777666655543 555555566666 555665555533
No 34
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=28.92 E-value=1.1e+02 Score=21.12 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=16.4
Q ss_pred CceEEEEEeCCCchH-HHHHHHHHHHHH
Q 034344 49 STSFFGVYDGHGGKA-VAKFCAKYLHQQ 75 (97)
Q Consensus 49 ~~~~fgVfDGHgG~~-~a~~~~~~L~~~ 75 (97)
..--+-|+.||||.. +-+.+.+.|-..
T Consensus 99 Gf~~ivivngHgGN~~~l~~~~~~l~~~ 126 (237)
T PF02633_consen 99 GFRRIVIVNGHGGNIAALEAAARELRQE 126 (237)
T ss_dssp T--EEEEEESSTTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHhHHHHHHHHHHHHHhh
Confidence 344567889999976 445555555444
No 35
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=27.72 E-value=94 Score=21.16 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=19.3
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHH
Q 034344 49 STSFFGVYDGHGGKAVAKFCAKYLH 73 (97)
Q Consensus 49 ~~~~fgVfDGHgG~~~a~~~~~~L~ 73 (97)
.-.+.--|-||||..|..-+++-..
T Consensus 119 KPalivSyGGhGGg~c~~qL~~v~~ 143 (199)
T KOG4530|consen 119 KPALIVSYGGHGGGRCQYQLRQVGV 143 (199)
T ss_pred CceEEEEecCCCCchHHHHHHHHHh
Confidence 3457777999999999988877543
No 36
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.87 E-value=58 Score=23.59 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.4
Q ss_pred eEEEEEe-CCCchHHHHHHHHHHHHH
Q 034344 51 SFFGVYD-GHGGKAVAKFCAKYLHQQ 75 (97)
Q Consensus 51 ~~fgVfD-GHgG~~~a~~~~~~L~~~ 75 (97)
.-+|||| |=||-.+.+.+.+.||..
T Consensus 6 ~~IgvFDSGVGGLsVlrei~~~LP~e 31 (269)
T COG0796 6 PPIGVFDSGVGGLSVLREIRRQLPDE 31 (269)
T ss_pred CeEEEEECCCCcHHHHHHHHHHCCCC
Confidence 4579999 778999999999999875
No 37
>CHL00001 rpoB RNA polymerase beta subunit
Probab=26.56 E-value=58 Score=28.11 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCCCCCceeeeeecCCCCceEEEEEecccCCCCCceeEEeccCC
Q 034344 3 VYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDL 46 (97)
Q Consensus 3 ~~~~~p~~~k~~~~~~~~~~~~g~~~~~G~R~~mED~~~~~~~~ 46 (97)
+.|+..+..+..+-..+...-+++.++.|| ++||+.++-..+
T Consensus 636 ~~ladg~~~~~gel~~G~N~~VA~m~~~GY--n~EDAiiin~~~ 677 (1070)
T CHL00001 636 QILADGAATVGGELALGKNVLVAYMPWEGY--NFEDAVLISERL 677 (1070)
T ss_pred CEeccChhhccccccCCccceeeeeecccc--ccchhhhhhhhh
Confidence 344433333333333445578889999998 899998876554
No 38
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=25.73 E-value=35 Score=22.94 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=7.7
Q ss_pred EEEeCCCchHHH
Q 034344 54 GVYDGHGGKAVA 65 (97)
Q Consensus 54 gVfDGHgG~~~a 65 (97)
-|++||||.++-
T Consensus 123 ~~ltG~GgDelf 134 (255)
T PF00733_consen 123 VLLTGQGGDELF 134 (255)
T ss_dssp EEE--TTHHHHH
T ss_pred EEEecccccccc
Confidence 478999998764
No 39
>CHL00207 rpoB RNA polymerase beta subunit; Provisional
Probab=25.71 E-value=60 Score=28.06 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=27.6
Q ss_pred CCCCCCCceeeeeecCCCCceEEEEEecccCCCCCceeEEeccCC
Q 034344 2 GVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDL 46 (97)
Q Consensus 2 ~~~~~~p~~~k~~~~~~~~~~~~g~~~~~G~R~~mED~~~~~~~~ 46 (97)
|+.|+..+..+..+-..+...-+++.++.|| +|||+.++-..+
T Consensus 630 G~iladg~~~~~~el~lG~N~lVA~m~y~GY--N~EDAiiink~~ 672 (1077)
T CHL00207 630 GQILADGSDIDNSELALGQNVLVAYMPWEGY--NFEDAILINKRL 672 (1077)
T ss_pred CCEEecchhccCCcccCCcccEEEEEeeecc--ccchhhhhhhhh
Confidence 3444444433333333445578899999999 899998876554
No 40
>TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit. This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit.
Probab=25.41 E-value=1.1e+02 Score=26.49 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=20.6
Q ss_pred CCceEEEEEecccCCCCCceeEEeccCC
Q 034344 19 NENVRYGLSSMQGWRATMEDAHAAYPDL 46 (97)
Q Consensus 19 ~~~~~~g~~~~~G~R~~mED~~~~~~~~ 46 (97)
+...-+++.++.|| +|||+.++-...
T Consensus 674 G~N~~VAvm~y~GY--n~EDAiiink~~ 699 (1065)
T TIGR02013 674 GRNVLVAFMPWNGY--NYEDAILISERL 699 (1065)
T ss_pred ccceEEEEEeeecc--cccceEEeehhh
Confidence 34578888999999 899999886554
No 41
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=23.71 E-value=1.6e+02 Score=22.09 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=23.8
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHHHh
Q 034344 49 STSFFGVYDGHG--GKAVAKFCAKYLHQQVLK 78 (97)
Q Consensus 49 ~~~~fgVfDGHg--G~~~a~~~~~~L~~~i~~ 78 (97)
+..-++++|||+ |..++.++.+...+.-.+
T Consensus 72 e~~a~a~vDg~~g~G~~a~~~Am~~aiekAr~ 103 (349)
T TIGR03175 72 TGPCTAIFHGDNGAGQVAAKMAMEHAIEIAKK 103 (349)
T ss_pred ecCcEEEEECCCCchHHHHHHHHHHHHHHHHH
Confidence 456788999999 788999988887776544
No 42
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=23.49 E-value=1.5e+02 Score=17.53 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=17.4
Q ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHcC
Q 034344 69 AKYLHQQVLKHEIYSAGDLVTSAQKAFLR 97 (97)
Q Consensus 69 ~~~L~~~i~~~~~~~~~~~~~al~~aF~~ 97 (97)
-.+|++.|..+. +.+.++||.+||..
T Consensus 26 lm~lfkkiY~~g---DDe~KRam~KSf~E 51 (82)
T PF05002_consen 26 LMNLFKKIYDNG---DDEMKRAMMKSFTE 51 (82)
T ss_dssp HHHHHHHHHTTS----SCHHHHHHHHHHC
T ss_pred HHHHHHHHHccC---CHHHHHHHHHHHHH
Confidence 345566666543 57899999999963
No 43
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=23.08 E-value=4e+02 Score=22.12 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=24.2
Q ss_pred ccCCCCCceeEEeccCCCCCceEEEEEeCCC-chHHHH
Q 034344 30 QGWRATMEDAHAAYPDLDSSTSFFGVYDGHG-GKAVAK 66 (97)
Q Consensus 30 ~G~R~~mED~~~~~~~~~~~~~~fgVfDGHg-G~~~a~ 66 (97)
++-+....|.+.+.. .+++...++|-||=| |..++.
T Consensus 561 k~g~~vsGD~y~~~~-l~~g~~~~~laDGmGhG~~Aa~ 597 (764)
T TIGR02865 561 KDGELVSGDSYSFGK-LSAGKYAVAISDGMGSGPEAAQ 597 (764)
T ss_pred CCCCcccCceEEEEE-ECCCEEEEEEEcccCCCHHHHH
Confidence 344567889886543 344567889999988 544443
No 44
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=21.37 E-value=1.3e+02 Score=22.29 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=23.2
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHHHh
Q 034344 50 TSFFGVYDGHG--GKAVAKFCAKYLHQQVLK 78 (97)
Q Consensus 50 ~~~fgVfDGHg--G~~~a~~~~~~L~~~i~~ 78 (97)
..-++|+||++ |.-++.++.+...+.-.+
T Consensus 73 ~~a~~~vDg~~g~G~~~~~~A~~~aiekA~~ 103 (335)
T PF02615_consen 73 TPASAVVDGDNGFGQVAAKFAMELAIEKAKE 103 (335)
T ss_dssp ETTEEEEEETTBBHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCccHHHHHHHHHHHHHHHHH
Confidence 44578999999 789999988888776544
No 45
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=21.30 E-value=1.9e+02 Score=21.45 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=23.5
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHHHh
Q 034344 49 STSFFGVYDGHG--GKAVAKFCAKYLHQQVLK 78 (97)
Q Consensus 49 ~~~~fgVfDGHg--G~~~a~~~~~~L~~~i~~ 78 (97)
+..-++++|||. |..++.++.+...+.-.+
T Consensus 61 ~~~a~a~vDg~~g~G~~~~~~am~~aiekAr~ 92 (330)
T PLN00105 61 ETKTSAAVDGNKNAGMLVLHHAMDMAIDKAKT 92 (330)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHHHH
Confidence 345678999999 788999888888776544
No 46
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=20.78 E-value=1.9e+02 Score=23.49 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=38.2
Q ss_pred cCCCCceEEEEEecccCC-CCCcee---EEeccCCCCCceEEEEEeCC-----------CchHHHHHHHHHHHH
Q 034344 16 DGQNENVRYGLSSMQGWR-ATMEDA---HAAYPDLDSSTSFFGVYDGH-----------GGKAVAKFCAKYLHQ 74 (97)
Q Consensus 16 ~~~~~~~~~g~~~~~G~R-~~mED~---~~~~~~~~~~~~~fgVfDGH-----------gG~~~a~~~~~~L~~ 74 (97)
.-+.+.+.||+-+.-.+- .+|.-. ..++..-...+++.-|.||- ||..+++|+.+-|..
T Consensus 142 ~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~ 215 (645)
T KOG0681|consen 142 TYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQL 215 (645)
T ss_pred HcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhc
Confidence 334566788876644321 222221 33333334478899999998 799999999998765
No 47
>PRK00405 rpoB DNA-directed RNA polymerase subunit beta; Reviewed
Probab=20.03 E-value=2e+02 Score=25.10 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.5
Q ss_pred CCceEEEEEecccCCCCCceeEEeccCC
Q 034344 19 NENVRYGLSSMQGWRATMEDAHAAYPDL 46 (97)
Q Consensus 19 ~~~~~~g~~~~~G~R~~mED~~~~~~~~ 46 (97)
+...-+++.++.|| +|||+.++-...
T Consensus 716 G~N~~VA~~~y~GY--n~EDaiiink~s 741 (1112)
T PRK00405 716 GQNVLVAFMPWNGY--NFEDAILISERL 741 (1112)
T ss_pred CcceEEEEEeeccc--CccceEEEEhhh
Confidence 34578888999999 899999886544
Done!