BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034345
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60182|GLNA_METJA Glutamine synthetase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=glnA PE=3 SV=1
Length = 454
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 31 PEFFLFKKDGRRPFQLVY--HGQFDDSRPSNNLPVTGRDIRLAIE 73
PEFFL K+D P + V G + D P ++ P RDI LA+E
Sbjct: 143 PEFFLLKRDPHNPHRWVPADDGGYFDVEPLDDAPDIRRDIVLALE 187
>sp|P12425|GLNA_BACSU Glutamine synthetase OS=Bacillus subtilis (strain 168) GN=glnA PE=1
SV=3
Length = 444
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 126 DFNLGPEPEFFLFKLDEKGEPTLELNDKGGYFDLAPTDLGENCRRDIVLELE 177
>sp|P99095|GLNA_STAAN Glutamine synthetase OS=Staphylococcus aureus (strain N315) GN=glnA
PE=1 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|P60890|GLNA_STAAM Glutamine synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=glnA PE=1 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|P0A039|GLNA_STAAW Glutamine synthetase OS=Staphylococcus aureus (strain MW2) GN=glnA
PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|P0A040|GLNA_STAAU Glutamine synthetase OS=Staphylococcus aureus GN=glnA PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q6G9Q4|GLNA_STAAS Glutamine synthetase OS=Staphylococcus aureus (strain MSSA476)
GN=glnA PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q6GHC6|GLNA_STAAR Glutamine synthetase OS=Staphylococcus aureus (strain MRSA252)
GN=glnA PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q5HGC3|GLNA_STAAC Glutamine synthetase OS=Staphylococcus aureus (strain COL) GN=glnA
PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q8CSR8|GLNA_STAES Glutamine synthetase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=glnA PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|Q5HPN2|GLNA_STAEQ Glutamine synthetase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=glnA PE=3 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L G + D P++ RDI L +E
Sbjct: 128 DFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELE 179
>sp|P19064|GLNA_BACCE Glutamine synthetase OS=Bacillus cereus GN=glnA PE=1 SV=3
Length = 444
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 24 DFGAACTPEFFLFKKD--GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
DF PEFFLFK D G +L +G + D P + RDI L +E
Sbjct: 126 DFNLGPEPEFFLFKVDEKGNPTLELNDNGGYFDLAPMDLGENCRRDIVLELE 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,196,227
Number of Sequences: 539616
Number of extensions: 1437914
Number of successful extensions: 2880
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2879
Number of HSP's gapped (non-prelim): 13
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)