Query 034345
Match_columns 97
No_of_seqs 109 out of 554
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02969 PRX_like1 Peroxiredoxi 99.5 1.9E-13 4.1E-18 96.0 8.5 81 7-91 87-171 (171)
2 PTZ00253 tryparedoxin peroxida 98.9 2.7E-09 5.8E-14 77.4 5.3 76 8-95 99-181 (199)
3 cd03016 PRX_1cys Peroxiredoxin 98.5 4E-07 8.7E-12 66.4 7.3 78 7-95 86-171 (203)
4 PRK13190 putative peroxiredoxi 98.5 6.3E-07 1.4E-11 65.5 7.3 76 9-95 90-171 (202)
5 cd03015 PRX_Typ2cys Peroxiredo 98.5 1E-06 2.2E-11 62.2 7.7 40 8-51 92-137 (173)
6 cd03012 TlpA_like_DipZ_like Tl 98.4 2.4E-07 5.2E-12 62.0 4.2 38 8-49 84-121 (126)
7 PF08534 Redoxin: Redoxin; In 98.4 8.8E-07 1.9E-11 60.0 6.2 45 7-55 83-136 (146)
8 PRK15412 thiol:disulfide inter 98.4 7.3E-07 1.6E-11 63.9 5.1 58 8-78 120-178 (185)
9 TIGR00385 dsbE periplasmic pro 98.3 1.2E-06 2.7E-11 62.0 5.1 55 8-77 115-172 (173)
10 cd03017 PRX_BCP Peroxiredoxin 98.3 1.7E-06 3.6E-11 57.9 4.8 46 8-55 79-133 (140)
11 cd03010 TlpA_like_DsbE TlpA-li 98.3 1.5E-06 3.2E-11 57.8 4.5 45 9-55 79-124 (127)
12 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 1.9E-06 4.1E-11 56.3 4.6 38 8-49 81-124 (124)
13 PRK15000 peroxidase; Provision 98.2 4.8E-06 1E-10 61.0 6.8 77 8-95 97-179 (200)
14 PRK13599 putative peroxiredoxi 98.2 8.4E-06 1.8E-10 60.6 7.8 75 8-93 90-171 (215)
15 TIGR01626 ytfJ_HI0045 conserve 98.2 3.7E-06 8.1E-11 61.7 5.5 46 8-55 121-170 (184)
16 PRK03147 thiol-disulfide oxido 98.1 5.5E-06 1.2E-10 57.3 5.5 43 8-52 117-159 (173)
17 cd03018 PRX_AhpE_like Peroxire 98.1 7.1E-06 1.5E-10 55.5 5.4 45 8-56 84-136 (149)
18 cd02967 mauD Methylamine utili 98.1 5.1E-06 1.1E-10 53.8 4.3 36 10-51 78-113 (114)
19 TIGR03137 AhpC peroxiredoxin. 98.1 1.2E-05 2.7E-10 57.8 6.3 40 8-51 91-136 (187)
20 PRK13189 peroxiredoxin; Provis 98.0 2.8E-05 6E-10 57.9 7.7 77 8-95 97-180 (222)
21 TIGR02661 MauD methylamine deh 98.0 1.3E-05 2.8E-10 57.8 5.2 56 9-79 127-182 (189)
22 cd03011 TlpA_like_ScsD_MtbDsbE 98.0 1.2E-05 2.6E-10 52.7 4.5 44 8-54 72-115 (123)
23 PRK09437 bcp thioredoxin-depen 98.0 2.4E-05 5.2E-10 53.7 5.8 41 8-50 86-138 (154)
24 PTZ00137 2-Cys peroxiredoxin; 98.0 4.6E-05 9.9E-10 58.6 7.8 62 7-77 160-226 (261)
25 cd02966 TlpA_like_family TlpA- 97.9 1.5E-05 3.3E-10 49.7 4.2 33 9-41 77-109 (116)
26 PRK10382 alkyl hydroperoxide r 97.9 6.1E-05 1.3E-09 54.9 7.3 62 7-77 90-157 (187)
27 cd02970 PRX_like2 Peroxiredoxi 97.9 1.9E-05 4.1E-10 52.9 4.3 38 8-49 79-145 (149)
28 PRK13728 conjugal transfer pro 97.9 3.2E-05 6.9E-10 56.8 5.7 56 9-77 113-172 (181)
29 cd02971 PRX_family Peroxiredox 97.9 2.4E-05 5.2E-10 52.1 4.4 41 8-52 79-128 (140)
30 PRK00522 tpx lipid hydroperoxi 97.8 6.1E-05 1.3E-09 53.2 6.4 57 8-75 98-165 (167)
31 PLN02412 probable glutathione 97.8 2.4E-05 5.3E-10 55.4 4.2 57 8-77 93-165 (167)
32 PLN02399 phospholipid hydroper 97.7 4.5E-05 9.8E-10 57.8 4.1 58 7-77 162-235 (236)
33 PRK13191 putative peroxiredoxi 97.6 0.00031 6.6E-09 52.1 7.1 60 8-76 95-161 (215)
34 TIGR02540 gpx7 putative glutat 97.4 0.00017 3.6E-09 49.8 3.2 56 8-76 86-153 (153)
35 COG1225 Bcp Peroxiredoxin [Pos 97.3 0.00035 7.6E-09 50.4 4.3 40 7-50 85-136 (157)
36 PTZ00256 glutathione peroxidas 97.3 0.00041 8.9E-09 49.7 4.2 57 8-77 105-182 (183)
37 cd00340 GSH_Peroxidase Glutath 97.3 0.0002 4.3E-09 49.4 2.5 45 8-54 85-145 (152)
38 TIGR02738 TrbB type-F conjugat 97.2 0.00054 1.2E-08 48.6 4.1 54 10-76 95-153 (153)
39 cd02950 TxlA TRX-like protein 97.2 0.0012 2.6E-08 45.7 5.6 53 19-84 66-118 (142)
40 cd02968 SCO SCO (an acronym fo 97.2 0.00049 1.1E-08 45.9 3.5 40 9-50 86-142 (142)
41 PLN02919 haloacid dehalogenase 97.1 0.00083 1.8E-08 59.9 5.4 57 8-77 481-537 (1057)
42 cd03014 PRX_Atyp2cys Peroxired 97.1 0.00094 2E-08 45.0 4.2 38 9-50 82-126 (143)
43 PRK14018 trifunctional thiored 97.0 0.0013 2.9E-08 55.0 5.6 42 10-53 120-161 (521)
44 COG0450 AhpC Peroxiredoxin [Po 96.9 0.0044 9.6E-08 46.2 6.5 61 8-77 96-162 (194)
45 cd03009 TryX_like_TryX_NRX Try 96.8 0.00058 1.3E-08 45.5 1.3 33 16-52 86-118 (131)
46 PTZ00056 glutathione peroxidas 96.6 0.0026 5.7E-08 46.4 4.0 59 8-79 102-181 (199)
47 cd02951 SoxW SoxW family; SoxW 96.5 0.0044 9.5E-08 41.0 4.2 47 19-78 74-121 (125)
48 cd03008 TryX_like_RdCVF Trypar 96.4 0.0042 9.1E-08 43.9 3.8 36 12-51 95-130 (146)
49 PF13098 Thioredoxin_2: Thiore 96.2 0.0065 1.4E-07 39.1 3.4 33 19-53 72-104 (112)
50 cd02975 PfPDO_like_N Pyrococcu 96.2 0.024 5.3E-07 37.6 6.2 57 9-77 54-111 (113)
51 cd02964 TryX_like_family Trypa 95.7 0.005 1.1E-07 41.3 1.1 33 18-54 88-120 (132)
52 TIGR00411 redox_disulf_1 small 95.5 0.023 5.1E-07 34.3 3.7 43 15-75 39-81 (82)
53 PF13905 Thioredoxin_8: Thiore 95.5 0.0058 1.2E-07 38.3 0.9 25 16-40 69-93 (95)
54 TIGR01126 pdi_dom protein disu 95.3 0.028 6E-07 34.9 3.5 35 15-52 55-89 (102)
55 cd03013 PRX5_like Peroxiredoxi 95.2 0.045 9.8E-07 38.3 4.8 42 9-55 90-142 (155)
56 PF09695 YtfJ_HI0045: Bacteria 95.1 0.036 7.8E-07 40.3 4.2 54 7-73 100-155 (160)
57 PRK09381 trxA thioredoxin; Pro 95.1 0.053 1.2E-06 34.8 4.6 51 12-76 58-108 (109)
58 cd02953 DsbDgamma DsbD gamma f 94.9 0.023 5E-07 36.3 2.3 33 18-52 61-94 (104)
59 cd02973 TRX_GRX_like Thioredox 94.7 0.075 1.6E-06 31.3 4.2 37 8-51 30-67 (67)
60 TIGR02740 TraF-like TraF-like 94.7 0.065 1.4E-06 41.1 4.7 48 18-77 218-265 (271)
61 cd02956 ybbN ybbN protein fami 94.6 0.046 9.9E-07 34.2 3.2 37 13-52 50-86 (96)
62 COG2143 Thioredoxin-related pr 94.4 0.053 1.1E-06 39.9 3.5 24 18-41 104-127 (182)
63 cd02963 TRX_DnaJ TRX domain, D 93.8 0.1 2.2E-06 34.2 3.7 26 15-41 65-90 (111)
64 TIGR01068 thioredoxin thioredo 93.7 0.15 3.2E-06 31.4 4.2 33 16-51 55-87 (101)
65 cd03005 PDI_a_ERp46 PDIa famil 93.7 0.11 2.3E-06 32.5 3.6 35 16-53 60-94 (102)
66 cd03065 PDI_b_Calsequestrin_N 93.6 0.14 3E-06 35.0 4.2 47 15-76 73-119 (120)
67 PRK10996 thioredoxin 2; Provis 92.9 0.18 3.9E-06 34.5 3.9 47 15-75 92-138 (139)
68 cd02961 PDI_a_family Protein D 92.8 0.11 2.4E-06 31.5 2.5 36 15-52 57-92 (101)
69 cd03002 PDI_a_MPD1_like PDI fa 92.7 0.13 2.8E-06 32.6 2.9 35 18-52 63-99 (109)
70 PF00085 Thioredoxin: Thioredo 92.4 0.27 6E-06 30.3 4.0 45 16-74 58-102 (103)
71 KOG0855 Alkyl hydroperoxide re 92.3 0.54 1.2E-05 35.2 5.9 33 8-40 146-185 (211)
72 cd02958 UAS UAS family; UAS is 92.1 0.45 9.9E-06 31.0 4.9 35 17-53 64-99 (114)
73 PLN00410 U5 snRNP protein, DIM 91.9 0.61 1.3E-05 33.0 5.7 62 13-78 61-122 (142)
74 cd02949 TRX_NTR TRX domain, no 91.9 0.22 4.8E-06 31.5 3.1 33 15-50 53-85 (97)
75 cd02994 PDI_a_TMX PDIa family, 91.7 0.3 6.6E-06 30.7 3.7 33 15-51 57-89 (101)
76 cd02999 PDI_a_ERp44_like PDIa 91.3 0.59 1.3E-05 30.1 4.7 31 18-52 61-91 (100)
77 KOG0854 Alkyl hydroperoxide re 90.9 1.3 2.9E-05 33.4 6.8 76 9-95 98-185 (224)
78 cd03001 PDI_a_P5 PDIa family, 90.9 0.35 7.6E-06 30.1 3.3 36 15-52 58-93 (103)
79 PRK11509 hydrogenase-1 operon 90.8 0.74 1.6E-05 32.3 5.1 54 13-80 75-128 (132)
80 KOG0910 Thioredoxin-like prote 90.7 0.34 7.4E-06 34.9 3.5 50 13-77 99-149 (150)
81 PTZ00051 thioredoxin; Provisio 90.6 0.36 7.8E-06 30.0 3.1 34 16-52 58-91 (98)
82 cd02985 TRX_CDSP32 TRX family, 90.5 0.47 1E-05 30.6 3.7 30 19-51 61-90 (103)
83 cd03004 PDI_a_ERdj5_C PDIa fam 90.3 0.4 8.7E-06 30.3 3.2 36 15-52 59-94 (104)
84 cd02948 TRX_NDPK TRX domain, T 90.2 0.66 1.4E-05 29.7 4.2 43 18-75 60-102 (102)
85 cd02998 PDI_a_ERp38 PDIa famil 89.8 0.36 7.8E-06 29.9 2.7 33 18-52 64-96 (105)
86 cd03003 PDI_a_ERdj5_N PDIa fam 89.6 0.34 7.3E-06 30.6 2.4 34 15-51 58-91 (101)
87 cd03026 AhpF_NTD_C TRX-GRX-lik 89.0 0.46 9.9E-06 30.5 2.8 38 8-52 43-81 (89)
88 TIGR02187 GlrX_arch Glutaredox 89.0 1 2.2E-05 32.8 4.9 34 17-52 65-98 (215)
89 cd03000 PDI_a_TMX3 PDIa family 88.8 0.73 1.6E-05 29.3 3.6 32 16-51 59-90 (104)
90 cd02947 TRX_family TRX family; 88.7 1.1 2.3E-05 26.3 4.1 34 15-51 49-82 (93)
91 PF00837 T4_deiodinase: Iodoth 88.5 2.3 5E-05 32.7 6.7 54 9-74 181-235 (237)
92 cd02997 PDI_a_PDIR PDIa family 88.5 0.79 1.7E-05 28.4 3.6 32 18-52 64-95 (104)
93 cd02962 TMX2 TMX2 family; comp 88.5 1.3 2.8E-05 31.3 5.0 38 14-55 87-130 (152)
94 COG3054 Predicted transcriptio 88.0 1.5 3.2E-05 32.3 5.1 40 13-55 129-170 (184)
95 PF13728 TraF: F plasmid trans 87.5 1.4 3.1E-05 32.7 5.0 35 18-53 172-206 (215)
96 cd02984 TRX_PICOT TRX domain, 86.8 1.2 2.6E-05 27.5 3.6 25 16-41 55-79 (97)
97 cd02957 Phd_like Phosducin (Ph 85.7 4.2 9E-05 26.4 6.0 52 14-72 60-112 (113)
98 cd02954 DIM1 Dim1 family; Dim1 84.9 2.7 5.9E-05 28.6 4.9 58 13-74 52-109 (114)
99 PRK00293 dipZ thiol:disulfide 84.3 1.1 2.3E-05 37.9 3.2 24 18-41 523-546 (571)
100 cd02995 PDI_a_PDI_a'_C PDIa fa 83.9 2.8 6.2E-05 25.8 4.4 34 18-52 62-95 (104)
101 cd02996 PDI_a_ERp44 PDIa famil 83.7 1.5 3.3E-05 28.0 3.1 41 9-51 57-98 (108)
102 KOG0852 Alkyl hydroperoxide re 82.3 1.3 2.9E-05 33.1 2.7 32 9-40 97-134 (196)
103 cd02965 HyaE HyaE family; HyaE 82.2 2.8 6E-05 28.5 4.0 38 12-52 66-103 (111)
104 KOG0907 Thioredoxin [Posttrans 81.5 2.4 5.2E-05 28.3 3.5 34 15-51 60-93 (106)
105 PF13192 Thioredoxin_3: Thiore 80.4 2.7 5.8E-05 25.7 3.2 24 22-52 42-65 (76)
106 PRK11657 dsbG disulfide isomer 80.0 1.7 3.7E-05 32.9 2.7 33 16-52 206-239 (251)
107 cd02993 PDI_a_APS_reductase PD 79.8 2.5 5.3E-05 27.3 3.0 31 19-51 67-98 (109)
108 cd03006 PDI_a_EFP1_N PDIa fami 79.6 2.6 5.7E-05 28.2 3.2 34 16-52 70-104 (113)
109 cd02989 Phd_like_TxnDC9 Phosdu 79.3 15 0.00032 24.1 6.7 44 8-54 53-97 (113)
110 TIGR00412 redox_disulf_2 small 79.2 6.5 0.00014 24.0 4.7 28 18-52 38-65 (76)
111 PTZ00102 disulphide isomerase; 78.7 3.3 7.3E-05 32.8 4.1 49 16-77 418-466 (477)
112 cd02955 SSP411 TRX domain, SSP 78.3 6.6 0.00014 26.7 4.9 36 11-50 52-97 (124)
113 cd02992 PDI_a_QSOX PDIa family 78.2 4.5 9.7E-05 26.6 4.0 24 17-40 66-89 (114)
114 PRK10606 btuE putative glutath 78.0 5.5 0.00012 28.9 4.7 34 33-77 149-182 (183)
115 PTZ00443 Thioredoxin domain-co 77.1 4.9 0.00011 30.2 4.3 32 15-50 92-123 (224)
116 PTZ00102 disulphide isomerase; 74.2 6.6 0.00014 31.2 4.6 33 15-51 92-124 (477)
117 TIGR01130 ER_PDI_fam protein d 73.4 5.7 0.00012 31.0 4.0 36 15-53 61-97 (462)
118 PF05176 ATP-synt_10: ATP10 pr 73.3 6.8 0.00015 30.0 4.3 30 18-51 203-234 (252)
119 smart00594 UAS UAS domain. 72.6 3.8 8.3E-05 27.2 2.5 37 16-53 73-109 (122)
120 smart00685 DM14 Repeats in fly 72.1 4.3 9.3E-05 24.9 2.4 22 67-88 36-57 (59)
121 PF13743 Thioredoxin_5: Thiore 71.7 2 4.4E-05 30.6 1.1 25 16-40 134-158 (176)
122 cd03023 DsbA_Com1_like DsbA fa 71.6 2.8 6.1E-05 27.4 1.7 28 18-53 118-145 (154)
123 cd02959 ERp19 Endoplasmic reti 70.0 11 0.00025 24.9 4.4 29 13-41 57-88 (117)
124 TIGR03143 AhpF_homolog putativ 70.0 6 0.00013 32.9 3.6 36 16-52 406-441 (555)
125 COG0386 BtuE Glutathione perox 69.9 9.2 0.0002 27.9 4.1 34 32-78 129-162 (162)
126 PF13462 Thioredoxin_4: Thiore 69.2 13 0.00028 24.7 4.6 21 18-41 125-145 (162)
127 PF01323 DSBA: DSBA-like thior 69.0 3.8 8.2E-05 28.2 2.0 29 16-51 154-182 (193)
128 COG1651 DsbG Protein-disulfide 68.3 6.3 0.00014 28.7 3.1 42 16-76 202-243 (244)
129 TIGR02739 TraF type-F conjugat 68.2 18 0.0004 27.8 5.7 48 19-78 203-250 (256)
130 PLN02861 long-chain-fatty-acid 68.0 10 0.00022 31.8 4.6 51 19-73 484-537 (660)
131 PF11009 DUF2847: Protein of u 67.4 10 0.00022 25.6 3.7 29 16-49 64-93 (105)
132 cd02983 P5_C P5 family, C-term 66.1 18 0.0004 24.6 4.9 54 15-82 63-121 (130)
133 PF13778 DUF4174: Domain of un 66.1 9.3 0.0002 25.7 3.4 44 20-76 68-112 (118)
134 PLN03051 acyl-activating enzym 64.1 9 0.0002 30.5 3.4 41 29-73 360-400 (499)
135 TIGR02372 4_coum_CoA_lig 4-cou 63.4 7.1 0.00015 31.0 2.7 42 29-74 278-319 (386)
136 PF07449 HyaE: Hydrogenase-1 e 62.1 15 0.00032 24.9 3.7 44 3-53 51-99 (107)
137 PLN02614 long-chain acyl-CoA s 61.8 15 0.00032 30.9 4.5 52 19-74 487-541 (666)
138 PHA02278 thioredoxin-like prot 61.2 14 0.00031 24.1 3.5 30 19-51 62-91 (103)
139 cd02986 DLP Dim1 family, Dim1- 60.7 23 0.00051 24.2 4.5 62 13-78 52-113 (114)
140 cd02991 UAS_ETEA UAS family, E 60.0 14 0.00031 24.7 3.4 34 19-52 66-100 (116)
141 PRK06087 short chain acyl-CoA 59.9 17 0.00038 28.9 4.4 44 27-74 411-454 (547)
142 PLN02736 long-chain acyl-CoA s 59.8 17 0.00037 30.1 4.5 51 19-73 477-531 (651)
143 PRK08279 long-chain-acyl-CoA s 59.7 10 0.00022 30.8 3.1 42 29-74 442-483 (600)
144 COG1999 Uncharacterized protei 59.1 14 0.00031 27.1 3.5 39 28-79 169-207 (207)
145 PRK06334 long chain fatty acid 58.7 12 0.00025 30.3 3.2 44 28-75 412-455 (539)
146 TIGR02187 GlrX_arch Glutaredox 58.0 16 0.00034 26.5 3.5 31 15-51 172-202 (215)
147 cd03024 DsbA_FrnE DsbA family, 56.6 8.3 0.00018 26.9 1.9 30 16-52 162-191 (201)
148 PF13590 DUF4136: Domain of un 56.3 38 0.00082 22.5 5.0 43 33-80 107-149 (151)
149 COG0365 Acs Acyl-coenzyme A sy 55.8 11 0.00023 31.9 2.7 64 7-75 371-441 (528)
150 TIGR02188 Ac_CoA_lig_AcsA acet 55.3 13 0.00029 30.4 3.1 43 28-74 477-519 (625)
151 PTZ00237 acetyl-CoA synthetase 55.2 18 0.00039 30.2 3.9 43 28-74 494-536 (647)
152 PHA02125 thioredoxin-like prot 55.1 12 0.00026 22.5 2.2 31 15-51 32-62 (75)
153 cd02960 AGR Anterior Gradient 54.9 26 0.00056 24.3 4.1 27 28-56 78-104 (130)
154 TIGR01217 ac_ac_CoA_syn acetoa 54.8 14 0.00031 30.8 3.2 43 28-74 501-543 (652)
155 cd02982 PDI_b'_family Protein 54.6 21 0.00045 22.0 3.3 23 17-39 54-78 (103)
156 PF02630 SCO1-SenC: SCO1/SenC; 54.5 7.9 0.00017 27.4 1.5 21 27-49 152-172 (174)
157 PRK13390 acyl-CoA synthetase; 54.5 27 0.00059 27.4 4.6 42 29-74 382-423 (501)
158 PRK07445 O-succinylbenzoic aci 54.3 14 0.0003 29.4 2.9 44 28-75 326-369 (452)
159 TIGR02316 propion_prpE propion 54.2 15 0.00032 30.3 3.2 43 28-74 474-516 (628)
160 PLN03102 acyl-activating enzym 54.1 14 0.00031 30.1 3.1 43 28-74 422-464 (579)
161 PRK08315 AMP-binding domain pr 54.0 14 0.00031 29.3 3.0 44 28-75 429-472 (559)
162 PRK13703 conjugal pilus assemb 53.4 59 0.0013 25.0 6.2 48 20-79 197-244 (248)
163 PRK06145 acyl-CoA synthetase; 53.3 24 0.00052 27.6 4.1 45 27-75 374-418 (497)
164 TIGR03098 ligase_PEP_1 acyl-Co 52.6 20 0.00042 28.1 3.5 42 29-74 397-438 (515)
165 PRK07788 acyl-CoA synthetase; 52.5 14 0.00031 29.5 2.8 44 27-74 428-471 (549)
166 PRK06839 acyl-CoA synthetase; 52.2 14 0.0003 28.8 2.6 44 27-74 372-415 (496)
167 PRK10524 prpE propionyl-CoA sy 52.0 15 0.00034 30.0 3.0 43 28-74 475-517 (629)
168 cd03025 DsbA_FrnE_like DsbA fa 51.6 15 0.00032 25.4 2.4 25 16-40 156-180 (193)
169 PRK10954 periplasmic protein d 51.3 44 0.00096 24.0 5.0 18 18-35 156-173 (207)
170 PRK05850 acyl-CoA synthetase; 50.5 25 0.00055 28.3 4.0 44 27-75 438-481 (578)
171 PRK06814 acylglycerophosphoeth 50.0 19 0.00042 31.7 3.4 45 27-75 1011-1055(1140)
172 cd02952 TRP14_like Human TRX-r 50.0 16 0.00034 24.9 2.3 25 16-40 76-101 (119)
173 PRK03640 O-succinylbenzoic aci 49.8 20 0.00043 27.9 3.1 43 28-74 362-404 (483)
174 PRK00174 acetyl-CoA synthetase 49.5 18 0.00039 29.8 3.0 43 28-74 485-527 (637)
175 PLN02860 o-succinylbenzoate-Co 49.4 18 0.00039 29.2 3.0 43 28-74 416-458 (563)
176 PRK08276 long-chain-fatty-acid 49.1 28 0.00061 27.3 3.9 45 26-74 369-413 (502)
177 PRK03584 acetoacetyl-CoA synth 49.0 22 0.00048 29.4 3.4 42 29-74 501-542 (655)
178 COG1560 HtrB Lauroyl/myristoyl 48.0 47 0.001 26.2 5.0 58 18-77 226-283 (308)
179 cd02972 DsbA_family DsbA famil 47.8 14 0.00031 21.7 1.7 21 17-37 71-91 (98)
180 PRK12583 acyl-CoA synthetase; 47.7 21 0.00046 28.3 3.1 43 28-74 430-472 (558)
181 TIGR03443 alpha_am_amid L-amin 47.7 16 0.00036 32.9 2.7 42 29-74 681-722 (1389)
182 PRK07514 malonyl-CoA synthase; 47.6 22 0.00047 27.8 3.1 44 28-75 379-422 (504)
183 PRK08633 2-acyl-glycerophospho 47.6 25 0.00053 30.7 3.6 45 28-76 1021-1065(1146)
184 PRK09274 peptide synthase; Pro 47.5 18 0.00038 28.9 2.6 42 29-74 423-464 (552)
185 PRK13738 conjugal transfer pil 47.4 20 0.00044 26.9 2.8 40 2-41 156-195 (209)
186 PLN02574 4-coumarate--CoA liga 47.2 29 0.00063 28.0 3.8 44 27-74 431-474 (560)
187 PRK07638 acyl-CoA synthetase; 46.2 24 0.00052 27.6 3.1 42 29-74 364-405 (487)
188 PRK07656 long-chain-fatty-acid 45.9 27 0.00058 27.2 3.3 44 28-75 394-437 (513)
189 PTZ00216 acyl-CoA synthetase; 45.9 31 0.00068 29.1 4.0 49 20-72 527-579 (700)
190 PF13848 Thioredoxin_6: Thiore 45.8 58 0.0013 21.9 4.7 39 8-51 22-60 (184)
191 PTZ00342 acyl-CoA synthetase; 45.5 29 0.00064 30.1 3.8 50 19-72 560-613 (746)
192 PRK06155 crotonobetaine/carnit 45.4 23 0.00049 28.5 2.9 44 28-75 402-445 (542)
193 PF13459 Fer4_15: 4Fe-4S singl 45.2 48 0.001 19.5 3.8 15 27-41 15-29 (65)
194 cd01659 TRX_superfamily Thiore 45.1 29 0.00063 17.6 2.5 17 23-39 47-63 (69)
195 cd03007 PDI_a_ERp29_N PDIa fam 45.1 21 0.00046 24.2 2.4 32 18-50 67-100 (116)
196 PRK08162 acyl-CoA synthetase; 44.8 23 0.0005 28.2 2.9 42 29-74 419-460 (545)
197 PRK07470 acyl-CoA synthetase; 44.6 23 0.00049 28.1 2.8 43 28-74 396-438 (528)
198 PLN03052 acetate--CoA ligase; 44.4 26 0.00057 30.1 3.3 41 29-73 592-632 (728)
199 PRK05852 acyl-CoA synthetase; 43.9 24 0.00052 28.1 2.8 45 26-74 408-452 (534)
200 PRK05851 long-chain-fatty-acid 43.8 27 0.00057 28.0 3.1 42 29-75 399-440 (525)
201 PRK08043 bifunctional acyl-[ac 43.4 31 0.00066 29.1 3.5 44 27-74 592-635 (718)
202 PRK05677 long-chain-fatty-acid 43.2 27 0.00058 28.2 3.0 44 28-75 435-478 (562)
203 PRK13295 cyclohexanecarboxylat 43.2 26 0.00057 28.0 3.0 43 28-74 421-463 (547)
204 PRK07867 acyl-CoA synthetase; 43.0 24 0.00051 28.4 2.7 44 27-74 382-425 (529)
205 PRK09088 acyl-CoA synthetase; 43.0 23 0.00051 27.6 2.6 43 28-74 363-405 (488)
206 PLN02654 acetate-CoA ligase 42.9 32 0.00069 28.9 3.5 45 26-74 513-557 (666)
207 PRK07868 acyl-CoA synthetase; 42.9 23 0.00051 31.5 2.8 43 28-74 838-880 (994)
208 COG1021 EntE Peptide arylation 42.4 38 0.00082 28.8 3.8 50 19-72 404-456 (542)
209 PRK09029 O-succinylbenzoic aci 42.3 31 0.00067 26.8 3.2 43 27-74 333-375 (458)
210 PRK07769 long-chain-fatty-acid 42.0 36 0.00077 28.0 3.6 42 28-74 466-507 (631)
211 PLN02246 4-coumarate--CoA liga 41.9 24 0.00051 28.2 2.5 43 29-75 415-457 (537)
212 PRK07008 long-chain-fatty-acid 41.7 29 0.00063 27.8 3.0 43 28-74 411-453 (539)
213 PRK10252 entF enterobactin syn 41.7 22 0.00047 31.7 2.5 42 29-74 840-881 (1296)
214 cd03019 DsbA_DsbA DsbA family, 41.6 13 0.00029 25.1 0.9 20 16-35 130-149 (178)
215 PRK07768 long-chain-fatty-acid 41.6 30 0.00065 27.6 3.1 42 29-74 417-458 (545)
216 PF04592 SelP_N: Selenoprotein 41.5 84 0.0018 24.3 5.3 67 4-81 81-151 (238)
217 PF05225 HTH_psq: helix-turn-h 41.4 30 0.00066 19.5 2.3 16 64-79 1-16 (45)
218 PRK06164 acyl-CoA synthetase; 41.4 32 0.0007 27.3 3.2 43 28-74 408-450 (540)
219 TIGR02743 TraW type-F conjugat 41.3 26 0.00057 26.2 2.5 37 3-41 159-195 (202)
220 PF13911 AhpC-TSA_2: AhpC/TSA 40.7 22 0.00048 22.9 1.9 22 7-28 34-55 (115)
221 COG2761 FrnE Predicted dithiol 40.5 71 0.0015 24.4 4.8 49 18-84 173-221 (225)
222 PRK05605 long-chain-fatty-acid 40.4 41 0.00088 27.1 3.7 43 28-74 447-489 (573)
223 PRK08308 acyl-CoA synthetase; 40.2 31 0.00068 26.5 2.9 42 29-74 294-335 (414)
224 PRK07798 acyl-CoA synthetase; 40.1 38 0.00083 26.5 3.4 42 29-74 411-452 (533)
225 TIGR01733 AA-adenyl-dom amino 40.1 24 0.00052 26.5 2.2 42 28-73 357-398 (408)
226 PLN02330 4-coumarate--CoA liga 40.1 29 0.00063 27.8 2.8 43 28-74 419-461 (546)
227 PRK08751 putative long-chain f 40.1 34 0.00075 27.3 3.2 44 28-75 439-482 (560)
228 PRK12406 long-chain-fatty-acid 40.0 33 0.00073 27.0 3.1 43 28-74 381-423 (509)
229 PRK06178 acyl-CoA synthetase; 39.4 34 0.00073 27.5 3.1 42 29-74 445-486 (567)
230 PRK07529 AMP-binding domain pr 39.3 32 0.0007 28.5 3.0 43 28-74 447-489 (632)
231 PF14595 Thioredoxin_9: Thiore 39.3 20 0.00044 24.4 1.6 29 13-41 78-109 (129)
232 PRK07059 Long-chain-fatty-acid 38.7 42 0.0009 26.9 3.5 45 27-75 436-480 (557)
233 PRK06060 acyl-CoA synthetase; 38.5 33 0.00072 28.7 3.0 43 28-74 367-409 (705)
234 TIGR01923 menE O-succinylbenzo 38.4 39 0.00086 25.7 3.2 43 28-74 322-364 (436)
235 COG1141 Fer Ferredoxin [Energy 38.2 90 0.002 19.5 4.2 28 14-41 4-31 (68)
236 PRK08316 acyl-CoA synthetase; 38.1 34 0.00074 26.7 2.8 43 28-74 397-439 (523)
237 PF11760 CbiG_N: Cobalamin syn 37.9 98 0.0021 20.0 4.5 74 2-86 5-83 (84)
238 TIGR02275 DHB_AMP_lig 2,3-dihy 37.8 40 0.00088 26.8 3.3 43 28-74 410-452 (527)
239 COG3118 Thioredoxin domain-con 37.5 27 0.00058 27.9 2.2 35 15-52 83-117 (304)
240 PRK13382 acyl-CoA synthetase; 37.5 34 0.00073 27.5 2.8 45 27-75 417-461 (537)
241 cd07984 LPLAT_LABLAT-like Lyso 37.1 1.1E+02 0.0024 20.9 5.1 57 19-78 123-179 (192)
242 PRK07824 O-succinylbenzoic aci 36.5 40 0.00087 25.3 2.9 42 29-75 237-278 (358)
243 PRK08314 long-chain-fatty-acid 36.5 37 0.00081 26.9 2.9 44 28-75 418-461 (546)
244 PRK06187 long-chain-fatty-acid 36.1 44 0.00095 26.0 3.2 43 28-74 397-439 (521)
245 PRK05620 long-chain-fatty-acid 36.1 39 0.00084 27.3 3.0 43 28-74 432-474 (576)
246 PRK06184 hypothetical protein; 36.0 79 0.0017 25.6 4.7 53 13-80 447-499 (502)
247 PRK09192 acyl-CoA synthetase; 36.0 45 0.00097 27.0 3.3 37 34-75 447-483 (579)
248 PRK05857 acyl-CoA synthetase; 35.8 43 0.00094 26.9 3.2 43 28-74 404-446 (540)
249 PRK06946 lipid A biosynthesis 34.8 1.1E+02 0.0023 23.3 5.0 56 20-77 214-269 (293)
250 PLN02479 acetate-CoA ligase 34.7 48 0.001 26.8 3.3 43 28-74 432-474 (567)
251 TIGR03208 cyc_hxne_CoA_lg cycl 34.4 37 0.0008 27.1 2.5 43 28-74 419-461 (538)
252 PRK12492 long-chain-fatty-acid 34.2 59 0.0013 26.2 3.7 44 27-74 442-485 (562)
253 PRK06710 long-chain-fatty-acid 33.7 39 0.00084 27.1 2.6 44 28-75 433-476 (563)
254 PRK07787 acyl-CoA synthetase; 33.3 41 0.00089 26.3 2.6 43 28-74 352-395 (471)
255 PRK13388 acyl-CoA synthetase; 33.0 41 0.00088 27.1 2.6 44 27-74 381-424 (540)
256 PRK07786 long-chain-fatty-acid 33.0 48 0.001 26.5 3.0 44 27-74 400-443 (542)
257 PRK06018 putative acyl-CoA syn 33.0 50 0.0011 26.4 3.1 42 29-74 413-454 (542)
258 PRK06188 acyl-CoA synthetase; 32.9 52 0.0011 26.0 3.1 42 28-73 395-436 (524)
259 PRK08008 caiC putative crotono 32.6 47 0.001 26.1 2.9 42 29-74 401-442 (517)
260 PRK10877 protein disulfide iso 32.4 41 0.00089 25.0 2.4 24 15-40 188-211 (232)
261 PTZ00032 60S ribosomal protein 32.2 21 0.00046 27.1 0.8 16 32-52 182-197 (211)
262 PRK08974 long-chain-fatty-acid 32.1 52 0.0011 26.4 3.1 43 28-74 434-476 (560)
263 PF02567 PhzC-PhzF: Phenazine 31.4 1.2E+02 0.0026 22.4 4.8 43 6-51 9-60 (281)
264 PLN02387 long-chain-fatty-acid 31.3 73 0.0016 27.0 3.9 50 19-72 521-578 (696)
265 TIGR02262 benz_CoA_lig benzoat 30.9 54 0.0012 25.8 2.9 43 29-75 387-429 (508)
266 PF02743 Cache_1: Cache domain 29.9 37 0.0008 20.3 1.5 29 20-52 43-71 (81)
267 PLN02734 glycyl-tRNA synthetas 29.6 2.3E+02 0.0049 25.2 6.7 65 7-79 596-664 (684)
268 COG0423 GRS1 Glycyl-tRNA synth 29.1 2.8E+02 0.006 24.1 6.9 72 4-79 480-554 (558)
269 PLN02430 long-chain-fatty-acid 28.7 99 0.0021 26.0 4.3 50 20-73 485-537 (660)
270 PRK14894 glycyl-tRNA synthetas 28.7 1.8E+02 0.004 25.1 5.8 27 11-37 466-495 (539)
271 PRK10946 entE enterobactin syn 28.5 74 0.0016 25.5 3.4 43 28-74 411-453 (536)
272 PRK04319 acetyl-CoA synthetase 28.3 53 0.0011 26.5 2.5 44 28-75 434-477 (570)
273 PF03190 Thioredox_DsbH: Prote 28.1 1.8E+02 0.0038 21.0 5.0 37 11-51 74-120 (163)
274 cd01224 PH_Collybistin Collybi 27.4 69 0.0015 21.8 2.6 27 26-55 16-52 (109)
275 PF07912 ERp29_N: ERp29, N-ter 27.1 1.3E+02 0.0028 21.1 4.0 30 17-48 69-100 (126)
276 cd03020 DsbA_DsbC_DsbG DsbA fa 26.7 50 0.0011 23.3 1.9 21 14-34 157-177 (197)
277 PRK04813 D-alanine--poly(phosp 26.4 71 0.0015 24.8 2.9 42 28-74 378-419 (503)
278 TIGR03143 AhpF_homolog putativ 26.4 79 0.0017 26.3 3.3 28 18-52 518-545 (555)
279 PF00501 AMP-binding: AMP-bind 25.9 77 0.0017 24.0 2.9 33 19-55 378-413 (417)
280 PRK06553 lipid A biosynthesis 25.8 1.8E+02 0.0038 22.2 4.9 56 20-77 236-294 (308)
281 PF01216 Calsequestrin: Calseq 25.8 93 0.002 25.7 3.5 36 14-53 95-132 (383)
282 PRK13383 acyl-CoA synthetase; 25.1 71 0.0015 25.3 2.7 42 29-74 399-440 (516)
283 TIGR01362 KDO8P_synth 3-deoxy- 24.9 2.8E+02 0.006 21.7 5.8 58 5-76 170-250 (258)
284 PF15603 Imm45: Immunity prote 24.9 1.9E+02 0.004 18.6 4.2 31 45-75 37-68 (82)
285 PRK13391 acyl-CoA synthetase; 24.4 89 0.0019 24.7 3.1 42 29-74 385-426 (511)
286 PRK06183 mhpA 3-(3-hydroxyphen 24.3 1.4E+02 0.003 24.5 4.3 29 11-40 482-510 (538)
287 PF02563 Poly_export: Polysacc 23.5 74 0.0016 19.6 2.1 38 33-78 32-69 (82)
288 PF13959 DUF4217: Domain of un 23.5 45 0.00098 20.1 1.0 17 17-33 47-63 (65)
289 PRK08025 lipid A biosynthesis 23.5 2.2E+02 0.0047 21.7 5.0 57 19-78 226-282 (305)
290 cd01216 Fe65 Fe65 Phosphotyros 23.3 1.2E+02 0.0027 20.5 3.3 32 44-80 4-35 (123)
291 TIGR03205 pimA dicarboxylate-- 23.2 84 0.0018 25.1 2.8 42 29-74 424-465 (541)
292 TIGR00495 crvDNA_42K 42K curve 22.6 76 0.0017 25.6 2.4 52 9-69 304-356 (389)
293 smart00775 LNS2 LNS2 domain. T 22.6 89 0.0019 21.7 2.5 34 8-41 118-153 (157)
294 KOG2501 Thioredoxin, nucleored 22.5 41 0.00089 24.4 0.8 36 15-53 101-136 (157)
295 PTZ00053 methionine aminopepti 22.5 30 0.00065 29.0 0.1 34 9-50 434-467 (470)
296 PLN02309 5'-adenylylsulfate re 22.4 94 0.002 25.9 3.0 31 18-50 410-441 (457)
297 PRK05198 2-dehydro-3-deoxyphos 22.2 3.5E+02 0.0076 21.2 5.9 16 5-20 178-193 (264)
298 cd03022 DsbA_HCCA_Iso DsbA fam 22.1 44 0.00096 22.8 0.9 18 18-35 156-173 (192)
299 PF15235 GRIN_C: G protein-reg 22.1 14 0.00031 26.3 -1.6 22 13-34 47-68 (137)
300 PF05228 CHASE4: CHASE4 domain 21.9 2.5E+02 0.0053 18.5 4.6 43 31-77 51-93 (161)
301 PRK06628 lipid A biosynthesis 21.9 3.4E+02 0.0075 20.5 5.8 35 19-55 216-250 (290)
302 KOG4614 Inner membrane protein 21.8 1.7E+02 0.0036 23.1 4.0 42 26-77 244-285 (287)
303 PRK05646 lipid A biosynthesis 21.7 2.6E+02 0.0056 21.3 5.1 57 19-77 226-282 (310)
304 PRK06860 lipid A biosynthesis 21.5 2.6E+02 0.0057 21.3 5.1 56 20-77 229-284 (309)
305 TIGR00060 L18_bact ribosomal p 21.4 41 0.00088 23.0 0.6 14 34-52 87-100 (114)
306 cd02979 PHOX_C FAD-dependent P 21.2 3E+02 0.0066 19.3 5.1 33 19-55 124-157 (167)
307 PF05117 DUF695: Family of unk 21.1 2.3E+02 0.0049 18.9 4.2 51 22-80 26-76 (136)
308 PRK12476 putative fatty-acid-- 20.8 1.2E+02 0.0026 24.9 3.3 40 29-73 479-518 (612)
309 PF00462 Glutaredoxin: Glutare 20.8 1.1E+02 0.0024 17.2 2.3 16 20-35 40-55 (60)
310 KOG4277 Uncharacterized conser 20.6 98 0.0021 25.5 2.6 29 19-51 90-118 (468)
311 TIGR01361 DAHP_synth_Bsub phos 20.4 63 0.0014 24.6 1.5 56 7-76 191-258 (260)
No 1
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.48 E-value=1.9e-13 Score=95.99 Aligned_cols=81 Identities=54% Similarity=0.988 Sum_probs=72.5
Q ss_pred hhcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCC
Q 034345 7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQK 86 (97)
Q Consensus 7 ~~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~~t 86 (97)
..++||++.|+++.+++.||...+|..||+|++| +++|+|.+++.........+...+.+||+++|+|+..+.++|
T Consensus 87 ~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G----~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 162 (171)
T cd02969 87 HGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDG----KLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQT 162 (171)
T ss_pred CCCCceEEECCchHHHHHcCCCcCCcEEEECCCC----eEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCcccc
Confidence 4678999999999999999999999999999999 799999999875332346678899999999999999999999
Q ss_pred Cc----eee
Q 034345 87 PS----IKW 91 (97)
Q Consensus 87 ~~----IKw 91 (97)
++ ++|
T Consensus 163 ~~~~~~~~~ 171 (171)
T cd02969 163 PSIGCSIKW 171 (171)
T ss_pred CCCCcccCC
Confidence 98 877
No 2
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.89 E-value=2.7e-09 Score=77.45 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=57.4
Q ss_pred hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345 8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 81 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v 81 (97)
.++||++.|++++++++||+. ..|..||||++| +|+|.-. .+.. ..++++++|+.|.+.+.+
T Consensus 99 ~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G----~i~~~~~-~~~~-------~~r~~~e~l~~l~a~~~~ 166 (199)
T PTZ00253 99 TMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKG----MLRQITV-NDMP-------VGRNVEEVLRLLEAFQFV 166 (199)
T ss_pred ccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCC----EEEEEEe-cCCC-------CCCCHHHHHHHHHhhhhH
Confidence 489999999999999999985 458999999999 6776422 2221 123688999999999887
Q ss_pred CCCCC-CceeecCCC
Q 034345 82 SSNQK-PSIKWHPQT 95 (97)
Q Consensus 82 ~~~~t-~~IKw~~~~ 95 (97)
..+.. -+|||++|+
T Consensus 167 ~~~~~~cp~~w~~g~ 181 (199)
T PTZ00253 167 EKHGEVCPANWKKGD 181 (199)
T ss_pred HhcCCEeCCCCCcCC
Confidence 76311 129999876
No 3
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.53 E-value=4e-07 Score=66.42 Aligned_cols=78 Identities=12% Similarity=0.169 Sum_probs=52.9
Q ss_pred hhcceeEEEeChhhHHHHhCCcc--------CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 7 LFLMWLITLFQSQDVARDFGAAC--------TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 7 ~~~~fpvL~D~~q~va~a~gA~~--------TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
..++||++.|++++++++||... .|.+||||++| +|+|.-..+... .....++.++|+++-..
T Consensus 86 ~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G----~I~~~~~~~~~~-----gr~~~ell~~l~~lq~~ 156 (203)
T cd03016 86 VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDK----KIRLILYYPATT-----GRNFDEILRVVDALQLT 156 (203)
T ss_pred CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCC----eEEEEEecCCCC-----CCCHHHHHHHHHHHhhH
Confidence 47899999999999999999752 35699999999 566553322221 11355788888887665
Q ss_pred CCCCCCCCCceeecCCC
Q 034345 79 QPVSSNQKPSIKWHPQT 95 (97)
Q Consensus 79 ~~v~~~~t~~IKw~~~~ 95 (97)
..-.+. | +..|++|+
T Consensus 157 ~~~~~~-~-p~~w~~g~ 171 (203)
T cd03016 157 DKHKVA-T-PANWKPGD 171 (203)
T ss_pred hhcCcC-c-CCCCCCCC
Confidence 433222 2 36777664
No 4
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.48 E-value=6.3e-07 Score=65.53 Aligned_cols=76 Identities=8% Similarity=0.152 Sum_probs=54.6
Q ss_pred cceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345 9 LMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS 82 (97)
Q Consensus 9 ~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~ 82 (97)
++||++.|++++++++||.. ..|.+||||++| +++|.-.-+... .....++-++|+++....+-.
T Consensus 90 ~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G----~I~~~~~~~~~~-----gr~~~ellr~l~~l~~~~~~~ 160 (202)
T PRK13190 90 IPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQ----IVRWMIYYPAET-----GRNIDEIIRITKALQVNWKRK 160 (202)
T ss_pred ceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCC----EEEEEEEeCCCC-----CCCHHHHHHHHHHhhhHHhcC
Confidence 68999999999999999985 589999999999 788876433321 224667888888887643221
Q ss_pred CCCCCceeecCCC
Q 034345 83 SNQKPSIKWHPQT 95 (97)
Q Consensus 83 ~~~t~~IKw~~~~ 95 (97)
.--|..|++|+
T Consensus 161 --~~~p~~w~~g~ 171 (202)
T PRK13190 161 --VATPANWQPGQ 171 (202)
T ss_pred --CCcCCCCCcCC
Confidence 11125676654
No 5
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.46 E-value=1e-06 Score=62.16 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=35.2
Q ss_pred hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeee
Q 034345 8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.++||++.|++++++++||+. ..|+.||||++| +++|+..
T Consensus 92 ~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G----~I~~~~~ 137 (173)
T cd03015 92 KINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEG----IIRHITV 137 (173)
T ss_pred CcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCC----eEEEEEe
Confidence 489999999999999999986 568999999999 6777764
No 6
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.45 E-value=2.4e-07 Score=61.98 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=34.6
Q ss_pred hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEe
Q 034345 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYH 49 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~ 49 (97)
.++||++.|+++.++++||+..+|+.||||++| +++|+
T Consensus 84 ~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G----~v~~~ 121 (126)
T cd03012 84 GITYPVANDNDYATWRAYGNQYWPALYLIDPTG----NVRHV 121 (126)
T ss_pred CCCCCEEECCchHHHHHhCCCcCCeEEEECCCC----cEEEE
Confidence 578999999999999999999999999999999 46554
No 7
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.41 E-value=8.8e-07 Score=60.00 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=39.4
Q ss_pred hhcceeEEEeChhhHHHHhCCc---------cCceEEEEecCCCCCeeEEEeeecCCC
Q 034345 7 LFLMWLITLFQSQDVARDFGAA---------CTPEFFLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 7 ~~~~fpvL~D~~q~va~a~gA~---------~TPe~fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
..++||++.|++++++++||+. .+|+.||||++| +++|++.-.+.
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G----~V~~~~~g~~~ 136 (146)
T PF08534_consen 83 YGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDG----KVVYRHVGPDP 136 (146)
T ss_dssp TTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTS----BEEEEEESSBT
T ss_pred hCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCC----EEEEEEeCCCC
Confidence 4578999999999999999999 999999999999 68888764433
No 8
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.36 E-value=7.3e-07 Score=63.94 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=43.7
Q ss_pred hccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 8 ~~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
.++|| ++.|+++.++++||...+|+.||||++| +++|+-.-+.+ ...++..|+.+++.
T Consensus 120 ~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G----~i~~~~~G~~~---------~~~l~~~i~~~~~~ 178 (185)
T PRK15412 120 GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNG----IIRYRHAGDLN---------PRVWESEIKPLWEK 178 (185)
T ss_pred CCCCceEEEcCCccHHHhcCCCcCCeEEEECCCc----eEEEEEecCCC---------HHHHHHHHHHHHHH
Confidence 46788 5889999999999999999999999999 45555432222 33677777777654
No 9
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.30 E-value=1.2e-06 Score=61.96 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=43.2
Q ss_pred hccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 8 ~~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
.++|| ++.|+.++++++||+..+|+.|+||++| +++|+ |.++ ...|++-|+++++
T Consensus 115 ~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G----~i~~~~~G~~~-----------~~~l~~~l~~~~~ 172 (173)
T TIGR00385 115 GNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNG----VILYRHAGPLN-----------NEVWTEGFLPAME 172 (173)
T ss_pred CCCCceEEECCCCchHHhcCCeeCCeEEEEcCCc----eEEEEEeccCC-----------HHHHHHHHHHHhh
Confidence 35787 6789999999999999999999999999 56655 5443 3367777777663
No 10
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.26 E-value=1.7e-06 Score=57.87 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=39.8
Q ss_pred hcceeEEEeChhhHHHHhCCccC---------ceEEEEecCCCCCeeEEEeeecCCC
Q 034345 8 FLMWLITLFQSQDVARDFGAACT---------PEFFLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~T---------Pe~fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
.++||++.|+++.++++||+..+ |++||||++|+ ++-.|.|..+..
T Consensus 79 ~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~--v~~~~~g~~~~~ 133 (140)
T cd03017 79 GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGK--IVKVWRKVKPKG 133 (140)
T ss_pred CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCE--EEEEEecCCccc
Confidence 57899999999999999999988 99999999996 677777776443
No 11
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.26 E-value=1.5e-06 Score=57.77 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=37.5
Q ss_pred ccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCC
Q 034345 9 LMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 9 ~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
++|| ++.|+.+.++++||...+|+.|+||++|+ ++-+|.|.+|..
T Consensus 79 ~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~--v~~~~~G~~~~~ 124 (127)
T cd03010 79 NPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGI--IRYKHVGPLTPE 124 (127)
T ss_pred CCCceEEECCcchHHHhcCCCCCCeEEEECCCce--EEEEEeccCChH
Confidence 4565 67899999999999999999999999995 455677988754
No 12
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.25 E-value=1.9e-06 Score=56.30 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=35.8
Q ss_pred hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEe
Q 034345 8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYH 49 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~ 49 (97)
.++||++.|.+++++++||+. .+|.+||||++| +|+|+
T Consensus 81 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g----~I~~~ 124 (124)
T PF00578_consen 81 GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDG----KIRYA 124 (124)
T ss_dssp TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTS----BEEEE
T ss_pred ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCC----EEEeC
Confidence 479999999999999999999 999999999999 79985
No 13
>PRK15000 peroxidase; Provisional
Probab=98.22 E-value=4.8e-06 Score=61.04 Aligned_cols=77 Identities=8% Similarity=0.103 Sum_probs=50.5
Q ss_pred hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345 8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV 81 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v 81 (97)
.++||++.|++++++++||.. ..|..||||++| +|+|.-.-+... .....++-++|+++--.++=
T Consensus 97 ~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G----~I~~~~~~~~~~-----gr~~~eilr~l~al~~~~~~ 167 (200)
T PRK15000 97 PVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANG----IVRHQVVNDLPL-----GRNIDEMLRMVDALQFHEEH 167 (200)
T ss_pred ccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCC----EEEEEEecCCCC-----CCCHHHHHHHHHHhhhHHhc
Confidence 469999999999999999987 689999999999 566653312221 11345666667665542211
Q ss_pred CCCCCCceeecCCC
Q 034345 82 SSNQKPSIKWHPQT 95 (97)
Q Consensus 82 ~~~~t~~IKw~~~~ 95 (97)
.+.-|..|++|+
T Consensus 168 --~~~~p~~w~~g~ 179 (200)
T PRK15000 168 --GDVCPAQWEKGK 179 (200)
T ss_pred --CCCcCCCCCCCC
Confidence 111236676664
No 14
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.20 E-value=8.4e-06 Score=60.55 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=51.9
Q ss_pred hcceeEEEeChhhHHHHhCCc-------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345 8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~-------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~ 80 (97)
.++||++.|++++++++||.. ..|.+||||++| ++++...-.... .....++-++|++|-....
T Consensus 90 ~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG----~Ir~~~~~p~~~-----gr~~~eilr~l~~lq~~~~ 160 (215)
T PRK13599 90 AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKG----TIRLIMYYPQEV-----GRNVDEILRALKALQTADQ 160 (215)
T ss_pred CCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCC----EEEEEEEcCCCC-----CCCHHHHHHHHHHhhhhhh
Confidence 589999999999999999973 579999999999 788886433221 1134567777877644332
Q ss_pred CCCCCCCceeecC
Q 034345 81 VSSNQKPSIKWHP 93 (97)
Q Consensus 81 v~~~~t~~IKw~~ 93 (97)
-.+. -+..|.+
T Consensus 161 ~~~~--~p~~w~~ 171 (215)
T PRK13599 161 YGVA--LPEKWPN 171 (215)
T ss_pred cCCC--cCCCCCC
Confidence 2111 1367766
No 15
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.18 E-value=3.7e-06 Score=61.70 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=40.0
Q ss_pred hccee---EEEeChhhHHHHhCCccCceE-EEEecCCCCCeeEEEeeecCCC
Q 034345 8 FLMWL---ITLFQSQDVARDFGAACTPEF-FLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 8 ~~~fp---vL~D~~q~va~a~gA~~TPe~-fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
...|| +++|+++.++.+||....|+. ||||++|+ ++-++.|.++..
T Consensus 121 ~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~Gk--Vv~~~~G~l~~e 170 (184)
T TIGR01626 121 KKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGK--VKFVKEGALSDS 170 (184)
T ss_pred cccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCc--EEEEEeCCCCHH
Confidence 55777 999999999999999999999 99999996 677788877554
No 16
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.14 E-value=5.5e-06 Score=57.29 Aligned_cols=43 Identities=26% Similarity=0.462 Sum_probs=36.2
Q ss_pred hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
.++||++.|++++++++||...+|+.||+|++|+ +.-.|.|..
T Consensus 117 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~--i~~~~~g~~ 159 (173)
T PRK03147 117 GLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGK--VVKVITGEM 159 (173)
T ss_pred CCCceEEECCcchHHHHcCCCCcCeEEEECCCCc--EEEEEeCCC
Confidence 5689999999999999999999999999999994 333455644
No 17
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.11 E-value=7.1e-06 Score=55.46 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=39.0
Q ss_pred hcceeEEEeCh--hhHHHHhCCcc------CceEEEEecCCCCCeeEEEeeecCCCC
Q 034345 8 FLMWLITLFQS--QDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDDSR 56 (97)
Q Consensus 8 ~~~fpvL~D~~--q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G~IDd~~ 56 (97)
.++||++.|.+ +++++.||+.. +|..||||++| +++|++..++..
T Consensus 84 ~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G----~v~~~~~~~~~~ 136 (149)
T cd03018 84 GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDG----IIRYAWVSDDGE 136 (149)
T ss_pred CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCC----EEEEEEecCCcc
Confidence 57999999988 99999999874 34899999999 799999888754
No 18
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.10 E-value=5.1e-06 Score=53.83 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=32.1
Q ss_pred ceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 10 ~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.||++++ ++++++||+..+|+.||||++| +++|+|=
T Consensus 78 ~~p~~~~--~~~~~~~~~~~~P~~~vid~~G----~v~~~~~ 113 (114)
T cd02967 78 AFPYVLS--AELGMAYQVSKLPYAVLLDEAG----VIAAKGL 113 (114)
T ss_pred CCcEEec--HHHHhhcCCCCcCeEEEECCCC----eEEeccc
Confidence 4899885 5799999999999999999999 8999983
No 19
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.07 E-value=1.2e-05 Score=57.82 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=35.3
Q ss_pred hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeee
Q 034345 8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.++||++.|.+++++++||.. ..|..||||++| +++|.-.
T Consensus 91 ~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G----~I~~~~~ 136 (187)
T TIGR03137 91 KITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEG----VIQAVEI 136 (187)
T ss_pred CcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCC----EEEEEEE
Confidence 689999999999999999976 469999999999 6777755
No 20
>PRK13189 peroxiredoxin; Provisional
Probab=98.03 E-value=2.8e-05 Score=57.88 Aligned_cols=77 Identities=10% Similarity=0.187 Sum_probs=51.2
Q ss_pred hcceeEEEeChhhHHHHhCCc-------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345 8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~-------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~ 80 (97)
.++||++.|.+++++++||.. ..|.+||||++| ++++.=.-+... .....++-++|+++...++
T Consensus 97 ~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G----~Ir~~~~~~~~~-----gr~~~eilr~l~alq~~~~ 167 (222)
T PRK13189 97 EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKG----IIRAILYYPQEV-----GRNMDEILRLVKALQTSDE 167 (222)
T ss_pred CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCC----eEEEEEecCCCC-----CCCHHHHHHHHHHhhhHhh
Confidence 479999999999999999965 458999999999 566552222221 1134567778887755332
Q ss_pred CCCCCCCceeecCCC
Q 034345 81 VSSNQKPSIKWHPQT 95 (97)
Q Consensus 81 v~~~~t~~IKw~~~~ 95 (97)
=. ..-+..|++|+
T Consensus 168 ~~--~~~p~~w~~g~ 180 (222)
T PRK13189 168 KG--VATPANWPPND 180 (222)
T ss_pred cC--cCcCCCCCCCC
Confidence 21 11236777765
No 21
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.99 E-value=1.3e-05 Score=57.80 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=43.9
Q ss_pred cceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345 9 LMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (97)
Q Consensus 9 ~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~ 79 (97)
++||.+ +.+++++++||+..+|+.|+||++| +++|+|.++ +...+++.++++-+|-
T Consensus 127 ~~~~~~-~~~~~i~~~y~v~~~P~~~lID~~G----~I~~~g~~~----------~~~~le~ll~~l~~~~ 182 (189)
T TIGR02661 127 LGGERY-VVSAEIGMAFQVGKIPYGVLLDQDG----KIRAKGLTN----------TREHLESLLEADREGF 182 (189)
T ss_pred CCccee-echhHHHHhccCCccceEEEECCCC----eEEEccCCC----------CHHHHHHHHHHHHcCc
Confidence 445533 3578999999999999999999999 799987532 2457889898887764
No 22
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.98 E-value=1.2e-05 Score=52.69 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=38.3
Q ss_pred hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCC
Q 034345 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDD 54 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd 54 (97)
.++||++.|+++++++.|+...+|..||+|++| ++-++.|.++.
T Consensus 72 ~~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g---i~~~~~g~~~~ 115 (123)
T cd03011 72 GYGFPVINDPDGVISARWGVSVTPAIVIVDPGG---IVFVTTGVTSE 115 (123)
T ss_pred CCCccEEECCCcHHHHhCCCCcccEEEEEcCCC---eEEEEeccCCH
Confidence 478999999999999999999999999999988 46777776543
No 23
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.96 E-value=2.4e-05 Score=53.69 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=34.2
Q ss_pred hcceeEEEeChhhHHHHhCCccC------------ceEEEEecCCCCCeeEEEee
Q 034345 8 FLMWLITLFQSQDVARDFGAACT------------PEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~T------------Pe~fvld~~g~~~~~l~Y~G 50 (97)
.++||+|.|+++.++++||+... |+.||||++|+ ++.+|.|
T Consensus 86 ~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~g 138 (154)
T PRK09437 86 LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGK--IEHVFDK 138 (154)
T ss_pred CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCE--EEEEEcC
Confidence 57899999999999999998654 67899999995 5556655
No 24
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.95 E-value=4.6e-05 Score=58.62 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=46.9
Q ss_pred hhcceeEEEeChhhHHHHhCCc-----cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 7 LFLMWLITLFQSQDVARDFGAA-----CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 7 ~~~~fpvL~D~~q~va~a~gA~-----~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
..++||+|.|++++++++||.. ..|.+||||++| +|+|.=.-|.... ....++-++|+++--
T Consensus 160 ~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG----~I~~~~~~~~~~g-----r~v~eiLr~l~alq~ 226 (261)
T PTZ00137 160 SPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAG----VVKHVAVYDLGLG-----RSVDETLRLFDAVQF 226 (261)
T ss_pred cCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCC----EEEEEEEeCCCCC-----CCHHHHHHHHHHhch
Confidence 3688999999999999999975 589999999999 7888765443321 134566667776653
No 25
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.94 E-value=1.5e-05 Score=49.66 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=31.4
Q ss_pred cceeEEEeChhhHHHHhCCccCceEEEEecCCC
Q 034345 9 LMWLITLFQSQDVARDFGAACTPEFFLFKKDGR 41 (97)
Q Consensus 9 ~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~ 41 (97)
.+||++.|+..++++.||...+|++||+|++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 77 ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred CCcceEEcCcchHHHhcCcCccceEEEECCCCc
Confidence 689999999999999999999999999999994
No 26
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.90 E-value=6.1e-05 Score=54.91 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=44.9
Q ss_pred hhcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 7 LFLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 7 ~~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
..++||+|.|++++++++||.. ..|..||||++| +++|.=.-+... .....++-++|+++-.
T Consensus 90 ~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G----~I~~~~~~~~~~-----~~~~~eil~~l~alq~ 157 (187)
T PRK10382 90 AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQG----IIQAIEVTAEGI-----GRDASDLLRKIKAAQY 157 (187)
T ss_pred cCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCC----EEEEEEEeCCCC-----CCCHHHHHHHHHhhhh
Confidence 3689999999999999999973 339999999999 788885433221 1234556666666543
No 27
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.89 E-value=1.9e-05 Score=52.91 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=33.9
Q ss_pred hcceeEEEeChhhHHHHhCCc-----------------------------cCceEEEEecCCCCCeeEEEe
Q 034345 8 FLMWLITLFQSQDVARDFGAA-----------------------------CTPEFFLFKKDGRRPFQLVYH 49 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~-----------------------------~TPe~fvld~~g~~~~~l~Y~ 49 (97)
.++||++.|++++++++||.. ..|..||||++| +++|.
T Consensus 79 ~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g----~i~~~ 145 (149)
T cd02970 79 FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDG----TILFA 145 (149)
T ss_pred CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCC----eEEEE
Confidence 578999999999999999984 799999999999 56664
No 28
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.89 E-value=3.2e-05 Score=56.80 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=44.4
Q ss_pred cceeEEEe-ChhhHHHHhCC--ccCceEEEEecCCCCCeeE-EEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 9 LMWLITLF-QSQDVARDFGA--ACTPEFFLFKKDGRRPFQL-VYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 9 ~~fpvL~D-~~q~va~a~gA--~~TPe~fvld~~g~~~~~l-~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
..||+++| +.+.+.+.||. ..+|+.||+|++|+ +.. .+.|.+|.. .|+..|+.+++
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~--i~~~~~~G~~~~~-----------~L~~~I~~ll~ 172 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL--EALPLLQGATDAA-----------GFMARMDTVLQ 172 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc--EEEEEEECCCCHH-----------HHHHHHHHHHh
Confidence 57999996 66778899995 69999999999995 222 589988755 67777877775
No 29
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.87 E-value=2.4e-05 Score=52.11 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=35.8
Q ss_pred hcceeEEEeChhhHHHHhCCccCc---------eEEEEecCCCCCeeEEEeeec
Q 034345 8 FLMWLITLFQSQDVARDFGAACTP---------EFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~TP---------e~fvld~~g~~~~~l~Y~G~I 52 (97)
..+||+|.|+.+.++++||+..+| .+||||++| +++|++.-
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g----~i~~~~~~ 128 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDG----KIRYVEVE 128 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCC----cEEEEEec
Confidence 578999999999999999999887 699999999 67777553
No 30
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.84 E-value=6.1e-05 Score=53.22 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=42.7
Q ss_pred hcc-eeEEEe-ChhhHHHHhCCccCc---------eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 8 FLM-WLITLF-QSQDVARDFGAACTP---------EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 8 ~~~-fpvL~D-~~q~va~a~gA~~TP---------e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
.++ ||++.| +.++++++||+...| ++||||++| +++|.-..++.... ..++++|+++
T Consensus 98 ~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G----~I~~~~~~~~~~~~-------~~~~~~l~~l 165 (167)
T PRK00522 98 GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENN----KVVYSELVPEITNE-------PDYDAALAAL 165 (167)
T ss_pred CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCC----eEEEEEECCCcCCC-------CCHHHHHHHh
Confidence 344 789999 556999999998877 999999999 79999876664321 1355666554
No 31
>PLN02412 probable glutathione peroxidase
Probab=97.83 E-value=2.4e-05 Score=55.35 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=42.1
Q ss_pred hcceeEEEe--Chh-hHHHHhC-------------CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHH
Q 034345 8 FLMWLITLF--QSQ-DVARDFG-------------AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLA 71 (97)
Q Consensus 8 ~~~fpvL~D--~~q-~va~a~g-------------A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~A 71 (97)
.++||++.| .++ .+++.|+ ..-+|+.||||++|+ ++-+|.|.++- ..|+.+
T Consensus 93 ~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~--vv~~~~g~~~~-----------~~l~~~ 159 (167)
T PLN02412 93 KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGK--VVQRYAPTTSP-----------LKIEKD 159 (167)
T ss_pred CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCc--EEEEECCCCCH-----------HHHHHH
Confidence 589999874 553 7777775 334799999999996 56666666532 368888
Q ss_pred HHHHHc
Q 034345 72 IECVLS 77 (97)
Q Consensus 72 i~alLa 77 (97)
|+++|+
T Consensus 160 i~~~l~ 165 (167)
T PLN02412 160 IQNLLG 165 (167)
T ss_pred HHHHHh
Confidence 988875
No 32
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.70 E-value=4.5e-05 Score=57.81 Aligned_cols=58 Identities=19% Similarity=0.120 Sum_probs=41.6
Q ss_pred hhcceeEEE--eChh-hHHHHhC-------C------ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHH
Q 034345 7 LFLMWLITL--FQSQ-DVARDFG-------A------ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRL 70 (97)
Q Consensus 7 ~~~~fpvL~--D~~q-~va~a~g-------A------~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~ 70 (97)
..++||++. |.++ .++..|+ . ...|+.||||++|+ ++-+|.|.++.. .|+.
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~Gk--Vv~~~~G~~~~~-----------~le~ 228 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGK--VVERYPPTTSPF-----------QIEK 228 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCc--EEEEECCCCCHH-----------HHHH
Confidence 367899984 4445 4545553 1 23699999999997 677788876332 7899
Q ss_pred HHHHHHc
Q 034345 71 AIECVLS 77 (97)
Q Consensus 71 Ai~alLa 77 (97)
.|+.+|+
T Consensus 229 ~I~~lL~ 235 (236)
T PLN02399 229 DIQKLLA 235 (236)
T ss_pred HHHHHhc
Confidence 9999886
No 33
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.59 E-value=0.00031 Score=52.14 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=42.6
Q ss_pred hcceeEEEeChhhHHHHhCCc-------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345 8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~-------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL 76 (97)
.++||+|.|.+++++++||.. ..|.+||||++| +++|.=.-+... + ....++-++|+++-
T Consensus 95 ~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G----~Ir~~~~~~~~~--g---r~~~eilr~l~alq 161 (215)
T PRK13191 95 EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKG----TVRLILYYPMEI--G---RNIDEILRAIRALQ 161 (215)
T ss_pred CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCC----EEEEEEecCCCC--C---CCHHHHHHHHHHhh
Confidence 588999999999999999963 469999999999 566642222221 1 13446666676653
No 34
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.38 E-value=0.00017 Score=49.78 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=39.1
Q ss_pred hcceeEEEe-----ChhhHHHHhCCc---cCce----EEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 8 FLMWLITLF-----QSQDVARDFGAA---CTPE----FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 8 ~~~fpvL~D-----~~q~va~a~gA~---~TPe----~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
.++||++.| +....+-.|+.. ..|+ .||||++|+ ++.+|.|.++.. .|+..|+.+
T Consensus 86 ~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~--v~~~~~g~~~~~-----------~l~~~i~~l 152 (153)
T TIGR02540 86 GVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQ--VVKFWRPEEPVE-----------EIRPEITAL 152 (153)
T ss_pred CCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCc--EEEEECCCCCHH-----------HHHHHHHHh
Confidence 678999987 333444445433 4798 999999997 777888875433 677777766
Q ss_pred H
Q 034345 76 L 76 (97)
Q Consensus 76 L 76 (97)
+
T Consensus 153 ~ 153 (153)
T TIGR02540 153 V 153 (153)
T ss_pred C
Confidence 4
No 35
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00035 Score=50.38 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=33.6
Q ss_pred hhcceeEEEeChhhHHHHhCCcc------------CceEEEEecCCCCCeeEEEee
Q 034345 7 LFLMWLITLFQSQDVARDFGAAC------------TPEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 7 ~~~~fpvL~D~~q~va~a~gA~~------------TPe~fvld~~g~~~~~l~Y~G 50 (97)
..++||.|-|++++|+++||+.. -+..||||++| +++|.=
T Consensus 85 ~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG----~I~~~~ 136 (157)
T COG1225 85 HGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDG----KIRYVW 136 (157)
T ss_pred hCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCC----eEEEEe
Confidence 36889999999999999999743 46799999999 566653
No 36
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.27 E-value=0.00041 Score=49.67 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=38.9
Q ss_pred hcceeEEEe--ChhhH-HHHh---------------CCccCce---EEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHH
Q 034345 8 FLMWLITLF--QSQDV-ARDF---------------GAACTPE---FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGR 66 (97)
Q Consensus 8 ~~~fpvL~D--~~q~v-a~a~---------------gA~~TPe---~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~ 66 (97)
.++||++.| .++.. ++.| +....|+ .||||++|+ ++-+|.|.++..
T Consensus 105 ~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~--Iv~~~~g~~~~~----------- 171 (183)
T PTZ00256 105 NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGK--VVKYFSPKVNPN----------- 171 (183)
T ss_pred CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCC--EEEEECCCCCHH-----------
Confidence 678999954 55544 3444 4557795 699999996 555666755332
Q ss_pred HHHHHHHHHHc
Q 034345 67 DIRLAIECVLS 77 (97)
Q Consensus 67 ~L~~Ai~alLa 77 (97)
.+++.|+.+|+
T Consensus 172 ~l~~~I~~ll~ 182 (183)
T PTZ00256 172 EMIQDIEKLLN 182 (183)
T ss_pred HHHHHHHHHhc
Confidence 57788888875
No 37
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.26 E-value=0.0002 Score=49.44 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=33.4
Q ss_pred hcceeEEEeC--hhh-HHHHhC--CccCc-----------eEEEEecCCCCCeeEEEeeecCC
Q 034345 8 FLMWLITLFQ--SQD-VARDFG--AACTP-----------EFFLFKKDGRRPFQLVYHGQFDD 54 (97)
Q Consensus 8 ~~~fpvL~D~--~q~-va~a~g--A~~TP-----------e~fvld~~g~~~~~l~Y~G~IDd 54 (97)
.++||++.|. ++. .+++|+ ....| +.||||++|+ ++-+|.|.++.
T Consensus 85 ~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~--i~~~~~G~~~~ 145 (152)
T cd00340 85 GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGE--VVKRFAPTTDP 145 (152)
T ss_pred CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCc--EEEEECCCCCH
Confidence 5789999873 444 567777 35666 7999999996 66778887643
No 38
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.19 E-value=0.00054 Score=48.62 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=36.5
Q ss_pred ceeEEEeChhhHH-HHh---CCccCceEEEEecCCCCCeeE-EEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345 10 MWLITLFQSQDVA-RDF---GAACTPEFFLFKKDGRRPFQL-VYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (97)
Q Consensus 10 ~fpvL~D~~q~va-~a~---gA~~TPe~fvld~~g~~~~~l-~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL 76 (97)
.||+.+|.++... +.| |...+|+.||||++|. ... ++.|.++.. .+++.|+.+|
T Consensus 95 ~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~--~i~~~~~G~~s~~-----------~l~~~I~~ll 153 (153)
T TIGR02738 95 GFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTR--KAYPVLQGAVDEA-----------ELANRMDEIL 153 (153)
T ss_pred ccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCC--EEEEEeecccCHH-----------HHHHHHHHhC
Confidence 4666666555554 455 7889999999999984 112 467765433 5777777664
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.17 E-value=0.0012 Score=45.74 Aligned_cols=53 Identities=11% Similarity=0.263 Sum_probs=42.0
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN 84 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~ 84 (97)
..+++.||....|++++||++|+ +.-++.|... ...|++.|+++++|.+.+..
T Consensus 66 ~~~~~~~~V~~iPt~v~~~~~G~--~v~~~~G~~~-----------~~~l~~~l~~l~~~~~~~~~ 118 (142)
T cd02950 66 LPEIDRYRVDGIPHFVFLDREGN--EEGQSIGLQP-----------KQVLAQNLDALVAGEPLPYA 118 (142)
T ss_pred HHHHHHcCCCCCCEEEEECCCCC--EEEEEeCCCC-----------HHHHHHHHHHHHcCCCCCcc
Confidence 37899999999999999999995 3445667432 34799999999999876654
No 40
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.17 E-value=0.00049 Score=45.95 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=31.4
Q ss_pred cceeEEEeCh---hhHHHHhCCcc--------------CceEEEEecCCCCCeeEEEee
Q 034345 9 LMWLITLFQS---QDVARDFGAAC--------------TPEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 9 ~~fpvL~D~~---q~va~a~gA~~--------------TPe~fvld~~g~~~~~l~Y~G 50 (97)
.+||+|.|+. +.++++||+.. +|..||||++|+ ++-.|+|
T Consensus 86 ~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~~ 142 (142)
T cd02968 86 PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGK--LVRYYGG 142 (142)
T ss_pred CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCC--EEEeecC
Confidence 5899999975 89999999653 467999999995 4555543
No 41
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.11 E-value=0.00083 Score=59.88 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=45.0
Q ss_pred hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
.+.||++.|..+.+++.||...+|+.||||++|+ +.-++.|..+ ...|++.|++++.
T Consensus 481 ~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~--iv~~~~G~~~-----------~~~l~~~l~~~l~ 537 (1057)
T PLN02919 481 NISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGK--LIAQLSGEGH-----------RKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccEEECCchHHHHhcCCCccceEEEECCCCe--EEEEEecccC-----------HHHHHHHHHHHHH
Confidence 4679999999999999999999999999999995 4445666432 2367777777655
No 42
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.07 E-value=0.00094 Score=44.99 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=31.9
Q ss_pred cceeEEEeCh-hhHHHHhCCcc------CceEEEEecCCCCCeeEEEee
Q 034345 9 LMWLITLFQS-QDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 9 ~~fpvL~D~~-q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G 50 (97)
.+||++.|.. +.++++||+.. .|..||||++| +++|.-
T Consensus 82 ~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G----~I~~~~ 126 (143)
T cd03014 82 DNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENG----KVIYVE 126 (143)
T ss_pred CCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCC----eEEEEE
Confidence 3799999996 99999999864 79999999999 555553
No 43
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.04 E-value=0.0013 Score=55.00 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=36.4
Q ss_pred ceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345 10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (97)
Q Consensus 10 ~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID 53 (97)
.||++.|..+.++++||....|+.||||++|+ ++-++.|.++
T Consensus 120 ~~pV~~D~~~~lak~fgV~giPTt~IIDkdGk--IV~~~~G~~~ 161 (521)
T PRK14018 120 KLPVLTDNGGTLAQSLNISVYPSWAIIGKDGD--VQRIVKGSIS 161 (521)
T ss_pred ccceeccccHHHHHHcCCCCcCeEEEEcCCCe--EEEEEeCCCC
Confidence 46999999999999999999999999999995 4556778764
No 44
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0044 Score=46.22 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=45.0
Q ss_pred hcceeEEEeChhhHHHHhCCccCc------eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 8 FLMWLITLFQSQDVARDFGAACTP------EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~TP------e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
+++||++-|.+++|+++||...-. -+||||++| ++++.=-.+..-.+ ...++-..|++|--
T Consensus 96 ~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g----~ir~~~v~~~~iGR-----n~dEilR~idAlq~ 162 (194)
T COG0450 96 KIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDG----VIRHILVNPLTIGR-----NVDEILRVIDALQF 162 (194)
T ss_pred ceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCC----eEEEEEEecCCCCc-----CHHHHHHHHHHHHH
Confidence 489999999999999999976533 479999999 78888665555322 23455566666554
No 45
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.79 E-value=0.00058 Score=45.49 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=28.1
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
|..+.++++||...+|++||||++| +++++.++
T Consensus 86 ~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~~ 118 (131)
T cd03009 86 ERRSRLNRTFKIEGIPTLIILDADG----EVVTTDAR 118 (131)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCC----CEEcccHH
Confidence 5567899999999999999999999 67776554
No 46
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.65 E-value=0.0026 Score=46.44 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=37.1
Q ss_pred hcceeEEEeC------hhh--------HHHHhCCccC-------ceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHH
Q 034345 8 FLMWLITLFQ------SQD--------VARDFGAACT-------PEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGR 66 (97)
Q Consensus 8 ~~~fpvL~D~------~q~--------va~a~gA~~T-------Pe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~ 66 (97)
.++||++.|. .+. ++..|+...+ |+.||||++|+ ++-+|.|.++. .
T Consensus 102 ~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~--iv~~~~g~~~~-----------~ 168 (199)
T PTZ00056 102 KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGN--VVAYFSPRTEP-----------L 168 (199)
T ss_pred CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCc--EEEEeCCCCCH-----------H
Confidence 5789999762 222 3334443322 37999999996 44455554422 2
Q ss_pred HHHHHHHHHHcCC
Q 034345 67 DIRLAIECVLSGQ 79 (97)
Q Consensus 67 ~L~~Ai~alLaG~ 79 (97)
.|+..|+.+|+.+
T Consensus 169 ~l~~~I~~ll~~~ 181 (199)
T PTZ00056 169 ELEKKIAELLGVK 181 (199)
T ss_pred HHHHHHHHHHHHH
Confidence 6888899888764
No 47
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.54 E-value=0.0044 Score=41.04 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=35.7
Q ss_pred hhHHHHhCCccCceEEEEecC-CCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 19 QDVARDFGAACTPEFFLFKKD-GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~-g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
++++++|+...+|++++++++ |+ ...++.|... ...+...|+.++++
T Consensus 74 ~~l~~~~~v~~~Pt~~~~~~~gg~--~~~~~~G~~~-----------~~~~~~~l~~~~~~ 121 (125)
T cd02951 74 KELARKYRVRFTPTVIFLDPEGGK--EIARLPGYLP-----------PDEFLAYLEYVQEK 121 (125)
T ss_pred HHHHHHcCCccccEEEEEcCCCCc--eeEEecCCCC-----------HHHHHHHHHHHHhh
Confidence 689999999999999999999 64 3556666532 23677777777764
No 48
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.45 E-value=0.0042 Score=43.94 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=28.9
Q ss_pred eEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 12 pvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
|+..+..+.++++||+...|+.||||++| +++.++.
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G----~Vv~~~~ 130 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDG----DVLAANA 130 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCC----cEEeeCh
Confidence 33334457999999999999999999999 6777754
No 49
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=96.18 E-value=0.0065 Score=39.06 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=23.8
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID 53 (97)
.++++.||...||+++++|++|+ ..-++.|.++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~--~v~~~~G~~~ 104 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGK--IVYRIPGYLS 104 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSC--EEEEEESS--
T ss_pred HHHHHHcCCCccCEEEEEcCCCC--EEEEecCCCC
Confidence 46999999999999999999995 3335677653
No 50
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.16 E-value=0.024 Score=37.59 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=40.9
Q ss_pred cceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 9 LMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 9 ~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
+.|-.+ .|+..+++++||...+|++++++..+.. -.++|+|... .+++..-|++++.
T Consensus 54 i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~~~~~~G~~~-----------~~el~~~i~~i~~ 111 (113)
T cd02975 54 LKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-GGIRYYGLPA-----------GYEFASLIEDIVR 111 (113)
T ss_pred eEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-ceEEEEecCc-----------hHHHHHHHHHHHh
Confidence 344433 6788899999999999999999875432 1568888643 3477777877763
No 51
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=95.65 E-value=0.005 Score=41.31 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=27.7
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCC
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDD 54 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd 54 (97)
.+.+++.||...+|+.+|||++| +++++...+.
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G----~iv~~~~~~~ 120 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDG----DVVTTNARDE 120 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCC----CEEchhHHHH
Confidence 46788999999999999999999 6777766543
No 52
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.51 E-value=0.023 Score=34.34 Aligned_cols=43 Identities=16% Similarity=0.377 Sum_probs=31.7
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
.|+..+.++.||...+|.+++ +| +.++.|..+ ...++++|+.+
T Consensus 39 ~~~~~~~~~~~~v~~vPt~~~---~g----~~~~~G~~~-----------~~~l~~~l~~~ 81 (82)
T TIGR00411 39 VMENPQKAMEYGIMAVPAIVI---NG----DVEFIGAPT-----------KEELVEAIKKR 81 (82)
T ss_pred CccCHHHHHHcCCccCCEEEE---CC----EEEEecCCC-----------HHHHHHHHHhh
Confidence 357889999999999999886 66 568888532 23577777654
No 53
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.50 E-value=0.0058 Score=38.27 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=21.9
Q ss_pred eChhhHHHHhCCccCceEEEEecCC
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDG 40 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g 40 (97)
+..+.+.+.|+...+|..+|||++|
T Consensus 69 ~~~~~l~~~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 69 DNNSELLKKYGINGIPTLVLLDPDG 93 (95)
T ss_dssp HHHHHHHHHTT-TSSSEEEEEETTS
T ss_pred chHHHHHHHCCCCcCCEEEEECCCC
Confidence 4467899999999999999999999
No 54
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=95.28 E-value=0.028 Score=34.92 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=29.3
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
.|....+++.||...+|++|++++++. ...|.|.+
T Consensus 55 ~~~~~~~~~~~~i~~~P~~~~~~~~~~---~~~~~g~~ 89 (102)
T TIGR01126 55 ATAEKDLASRFGVSGFPTIKFFPKGKK---PVDYEGGR 89 (102)
T ss_pred ccchHHHHHhCCCCcCCEEEEecCCCc---ceeecCCC
Confidence 456788999999999999999999984 57788853
No 55
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.21 E-value=0.045 Score=38.27 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=33.6
Q ss_pred cceeEEEeChhhHHHHhCCcc-----------CceEEEEecCCCCCeeEEEeeecCCC
Q 034345 9 LMWLITLFQSQDVARDFGAAC-----------TPEFFLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 9 ~~fpvL~D~~q~va~a~gA~~-----------TPe~fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
.+||+|-|.+.+++++||... ..-+|||| +| +++|.-.-++.
T Consensus 90 ~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g----~I~~~~~~~~~ 142 (155)
T cd03013 90 DKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DG----KVKYLFVEEDP 142 (155)
T ss_pred CcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CC----EEEEEEEecCC
Confidence 389999999999999999742 34569999 67 78888765554
No 56
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=95.15 E-value=0.036 Score=40.30 Aligned_cols=54 Identities=17% Similarity=0.342 Sum_probs=40.9
Q ss_pred hhccee-EEEeChhhHHHHhC-CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHH
Q 034345 7 LFLMWL-ITLFQSQDVARDFG-AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (97)
Q Consensus 7 ~~~~fp-vL~D~~q~va~a~g-A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~ 73 (97)
+.+|+. +++|+++.+.++++ ..+.=.++|+|++|+ ++-...|++.+. ++++.|+
T Consensus 100 k~~p~s~~vlD~~G~~~~aW~L~~~~SaiiVlDK~G~--V~F~k~G~Ls~~-----------Ev~qVi~ 155 (160)
T PF09695_consen 100 KEFPWSQFVLDSNGVVRKAWQLQEESSAIIVLDKQGK--VQFVKEGALSPA-----------EVQQVIA 155 (160)
T ss_pred hhCCCcEEEEcCCCceeccccCCCCCceEEEEcCCcc--EEEEECCCCCHH-----------HHHHHHH
Confidence 457888 78999999999999 558888999999995 444455665444 6777664
No 57
>PRK09381 trxA thioredoxin; Provisional
Probab=95.10 E-value=0.053 Score=34.78 Aligned_cols=51 Identities=20% Similarity=0.381 Sum_probs=34.7
Q ss_pred eEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345 12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (97)
Q Consensus 12 pvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL 76 (97)
.+=.|..+.+++.|+...+|+++++ ++|+ ...++.|..+ ...|+..|+..|
T Consensus 58 ~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~i~~~~ 108 (109)
T PRK09381 58 KLNIDQNPGTAPKYGIRGIPTLLLF-KNGE--VAATKVGALS-----------KGQLKEFLDANL 108 (109)
T ss_pred EEECCCChhHHHhCCCCcCCEEEEE-eCCe--EEEEecCCCC-----------HHHHHHHHHHhc
Confidence 3556777899999999999999999 4673 2334445432 235777776654
No 58
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=94.87 E-value=0.023 Score=36.29 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=26.4
Q ss_pred hhhHHHHhCCccCceEEEEec-CCCCCeeEEEeeec
Q 034345 18 SQDVARDFGAACTPEFFLFKK-DGRRPFQLVYHGQF 52 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~-~g~~~~~l~Y~G~I 52 (97)
..+++++||...+|+++++++ +|+ ...++.|.+
T Consensus 61 ~~~~~~~~~i~~~Pti~~~~~~~g~--~~~~~~G~~ 94 (104)
T cd02953 61 ITALLKRFGVFGPPTYLFYGPGGEP--EPLRLPGFL 94 (104)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCC--CCccccccc
Confidence 468999999999999999998 664 355666654
No 59
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=94.73 E-value=0.075 Score=31.31 Aligned_cols=37 Identities=16% Similarity=0.401 Sum_probs=28.1
Q ss_pred hcceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 8 FLMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 8 ~~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.+.|-.+ .|+.+++++.||...+|.+++ +| +++|.|+
T Consensus 30 ~i~~~~id~~~~~~l~~~~~i~~vPti~i---~~----~~~~~g~ 67 (67)
T cd02973 30 NISAEMIDAAEFPDLADEYGVMSVPAIVI---NG----KVEFVGR 67 (67)
T ss_pred ceEEEEEEcccCHhHHHHcCCcccCEEEE---CC----EEEEecC
Confidence 4555444 466788999999999999876 45 6889885
No 60
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=94.65 E-value=0.065 Score=41.12 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=32.6
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
++.+++.||...+|+.||+|++|+. +.....|.++. ..|.+-|..+..
T Consensus 218 d~~la~~~gV~~vPtl~Lv~~~~~~-v~~v~~G~~s~-----------~eL~~~i~~~a~ 265 (271)
T TIGR02740 218 DAGQAQQLKIRTVPAVFLADPDPNQ-FTPIGFGVMSA-----------DELVDRILLAAH 265 (271)
T ss_pred CHHHHHHcCCCcCCeEEEEECCCCE-EEEEEeCCCCH-----------HHHHHHHHHHhc
Confidence 3568999999999999999996531 23345565533 367776665544
No 61
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=94.60 E-value=0.046 Score=34.15 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=28.9
Q ss_pred EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
+=.|...++++.|+...+|+.++++ +|+ ..-+|.|..
T Consensus 50 vd~~~~~~l~~~~~i~~~Pt~~~~~-~g~--~~~~~~g~~ 86 (96)
T cd02956 50 VNCDAQPQIAQQFGVQALPTVYLFA-AGQ--PVDGFQGAQ 86 (96)
T ss_pred EeccCCHHHHHHcCCCCCCEEEEEe-CCE--EeeeecCCC
Confidence 3367888999999999999999997 664 244677753
No 62
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.053 Score=39.92 Aligned_cols=24 Identities=33% Similarity=0.809 Sum_probs=22.4
Q ss_pred hhhHHHHhCCccCceEEEEecCCC
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGR 41 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~ 41 (97)
+.++|+.|+++.||+++.+|++|+
T Consensus 104 ~~ELa~kf~vrstPtfvFfdk~Gk 127 (182)
T COG2143 104 TEELAQKFAVRSTPTFVFFDKTGK 127 (182)
T ss_pred HHHHHHHhccccCceEEEEcCCCC
Confidence 458999999999999999999997
No 63
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=93.82 E-value=0.1 Score=34.24 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.0
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCC
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGR 41 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~ 41 (97)
.|..+.++++||...+|++++++ +|+
T Consensus 65 ~d~~~~l~~~~~V~~~Pt~~i~~-~g~ 90 (111)
T cd02963 65 AGHERRLARKLGAHSVPAIVGII-NGQ 90 (111)
T ss_pred ccccHHHHHHcCCccCCEEEEEE-CCE
Confidence 35677999999999999999996 663
No 64
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=93.73 E-value=0.15 Score=31.35 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=24.6
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
|....+++.||...+|+.++++ +|. ...++.|.
T Consensus 55 ~~~~~~~~~~~v~~~P~~~~~~-~g~--~~~~~~g~ 87 (101)
T TIGR01068 55 DENPDIAAKYGIRSIPTLLLFK-NGK--EVDRSVGA 87 (101)
T ss_pred CCCHHHHHHcCCCcCCEEEEEe-CCc--EeeeecCC
Confidence 5667889999999999999995 553 23445554
No 65
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=93.72 E-value=0.11 Score=32.45 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=27.7
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID 53 (97)
|....+++.|+...+|+++++. +|. ...+|.|..+
T Consensus 60 ~~~~~~~~~~~v~~~Pt~~~~~-~g~--~~~~~~G~~~ 94 (102)
T cd03005 60 TQHRELCSEFQVRGYPTLLLFK-DGE--KVDKYKGTRD 94 (102)
T ss_pred CCChhhHhhcCCCcCCEEEEEe-CCC--eeeEeeCCCC
Confidence 5567899999999999999995 554 3567999754
No 66
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=93.61 E-value=0.14 Score=34.99 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=36.5
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL 76 (97)
.|+..++|+.||....|+++++. +|+ .+.|.|..+ ...|...|+.|+
T Consensus 73 ~d~~~~La~~~~I~~iPTl~lfk-~G~---~v~~~G~~~-----------~~~l~~~l~~~~ 119 (120)
T cd03065 73 SKKDAKVAKKLGLDEEDSIYVFK-DDE---VIEYDGEFA-----------ADTLVEFLLDLI 119 (120)
T ss_pred CCCCHHHHHHcCCccccEEEEEE-CCE---EEEeeCCCC-----------HHHHHHHHHHHh
Confidence 57889999999999999999996 664 567888642 336777777664
No 67
>PRK10996 thioredoxin 2; Provisional
Probab=92.90 E-value=0.18 Score=34.54 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=32.1
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
.|+..++++.||...+|++++++ +|+ ..-++.|..+ ...+++.|+.+
T Consensus 92 ~~~~~~l~~~~~V~~~Ptlii~~-~G~--~v~~~~G~~~-----------~e~l~~~l~~~ 138 (139)
T PRK10996 92 TEAERELSARFRIRSIPTIMIFK-NGQ--VVDMLNGAVP-----------KAPFDSWLNEA 138 (139)
T ss_pred CCCCHHHHHhcCCCccCEEEEEE-CCE--EEEEEcCCCC-----------HHHHHHHHHHh
Confidence 56778999999999999988885 673 2334455422 33566666654
No 68
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=92.83 E-value=0.11 Score=31.46 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=28.7
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
.|....+++.||...+|+.+++++++. ...+|.|..
T Consensus 57 ~~~~~~~~~~~~i~~~Pt~~~~~~~~~--~~~~~~g~~ 92 (101)
T cd02961 57 CTANNDLCSEYGVRGYPTIKLFPNGSK--EPVKYEGPR 92 (101)
T ss_pred ccchHHHHHhCCCCCCCEEEEEcCCCc--ccccCCCCc
Confidence 355579999999999999999998853 267777763
No 69
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=92.74 E-value=0.13 Score=32.62 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=26.0
Q ss_pred hhhHHHHhCCccCceEEEEecCCC--CCeeEEEeeec
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGR--RPFQLVYHGQF 52 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~--~~~~l~Y~G~I 52 (97)
..++++.|+...+|+++++++.+. +.....|.|..
T Consensus 63 ~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~ 99 (109)
T cd03002 63 NKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGER 99 (109)
T ss_pred cHHHHHHcCCCcCCEEEEEeCCCcccccccccccCcc
Confidence 567999999999999999998861 00145666653
No 70
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=92.41 E-value=0.27 Score=30.28 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=32.8
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
|+...+++.|+...+|+++++..... .-+|.|..+ ...|.+.|+.
T Consensus 58 ~~~~~l~~~~~v~~~Pt~~~~~~g~~---~~~~~g~~~-----------~~~l~~~i~~ 102 (103)
T PF00085_consen 58 DENKELCKKYGVKSVPTIIFFKNGKE---VKRYNGPRN-----------AESLIEFIEK 102 (103)
T ss_dssp TTSHHHHHHTTCSSSSEEEEEETTEE---EEEEESSSS-----------HHHHHHHHHH
T ss_pred hccchhhhccCCCCCCEEEEEECCcE---EEEEECCCC-----------HHHHHHHHHc
Confidence 44567999999999999999977662 558888632 3366666653
No 71
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.54 Score=35.15 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=30.0
Q ss_pred hcceeEEEeChhhHHHHhCCccCc-------eEEEEecCC
Q 034345 8 FLMWLITLFQSQDVARDFGAACTP-------EFFLFKKDG 40 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~TP-------e~fvld~~g 40 (97)
.+||-.|-|+.+++-+.+||..+| ..||||+.|
T Consensus 146 nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 146 NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 577888999999999999999998 579999998
No 72
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=92.08 E-value=0.45 Score=31.02 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=26.5
Q ss_pred ChhhHHHHhCCccCceEEEEec-CCCCCeeEEEeeecC
Q 034345 17 QSQDVARDFGAACTPEFFLFKK-DGRRPFQLVYHGQFD 53 (97)
Q Consensus 17 ~~q~va~a~gA~~TPe~fvld~-~g~~~~~l~Y~G~ID 53 (97)
+..++++.|+...+|.+++||+ +|+ ..-+..|.++
T Consensus 64 e~~~~~~~~~~~~~P~~~~i~~~~g~--~l~~~~G~~~ 99 (114)
T cd02958 64 EGQRFLQSYKVDKYPHIAIIDPRTGE--VLKVWSGNIT 99 (114)
T ss_pred cHHHHHHHhCccCCCeEEEEeCccCc--EeEEEcCCCC
Confidence 3458999999999999999999 774 3444456543
No 73
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=91.88 E-value=0.61 Score=32.96 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=43.7
Q ss_pred EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
|=+|+.+++|+.|+....|.+|.|=++|. ....+|.-+++.- +....+...|.+.|+.++.|
T Consensus 61 VDVDe~~dla~~y~I~~~~t~~~ffk~g~---~~vd~~tG~~~k~-~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 61 VDITEVPDFNTMYELYDPCTVMFFFRNKH---IMIDLGTGNNNKI-NWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred EECCCCHHHHHHcCccCCCcEEEEEECCe---EEEEEeccccccc-ccccCCHHHHHHHHHHHHHH
Confidence 33577779999999997777775556773 4888887766531 22234667888888887766
No 74
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=91.86 E-value=0.22 Score=31.48 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=24.6
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEee
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G 50 (97)
.|+.+++++.||...+|+.++++ +|+ ..-++.|
T Consensus 53 ~d~~~~l~~~~~v~~vPt~~i~~-~g~--~v~~~~g 85 (97)
T cd02949 53 IDEDQEIAEAAGIMGTPTVQFFK-DKE--LVKEISG 85 (97)
T ss_pred CCCCHHHHHHCCCeeccEEEEEE-CCe--EEEEEeC
Confidence 34577899999999999999996 563 2334444
No 75
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=91.73 E-value=0.3 Score=30.68 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.4
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.|+...+++.|+...+|+++++ ++|+ ..+|.|.
T Consensus 57 ~~~~~~~~~~~~i~~~Pt~~~~-~~g~---~~~~~G~ 89 (101)
T cd02994 57 VTQEPGLSGRFFVTALPTIYHA-KDGV---FRRYQGP 89 (101)
T ss_pred ccCCHhHHHHcCCcccCEEEEe-CCCC---EEEecCC
Confidence 4667789999999999999987 6774 4677774
No 76
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=91.26 E-value=0.59 Score=30.14 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=26.6
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
...+++.||...+|+++++++. . ..+|.|..
T Consensus 61 ~~~l~~~~~V~~~PT~~lf~~g-~---~~~~~G~~ 91 (100)
T cd02999 61 KPSLLSRYGVVGFPTILLFNST-P---RVRYNGTR 91 (100)
T ss_pred CHHHHHhcCCeecCEEEEEcCC-c---eeEecCCC
Confidence 4789999999999999999866 3 78999964
No 77
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=1.3 Score=33.37 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=48.2
Q ss_pred cceeEEEeChhhHHHHhCCc------------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345 9 LMWLITLFQSQDVARDFGAA------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (97)
Q Consensus 9 ~~fpvL~D~~q~va~a~gA~------------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL 76 (97)
++||++-|+..++|-.||-. +.=.+||+|++-+ ++|.+.=.-. ......++-.+|++|.
T Consensus 98 ~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkK--irLs~lYP~t-------tGRN~dEiLRvidsLq 168 (224)
T KOG0854|consen 98 VPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKK--IRLSFLYPST-------TGRNFDEILRVIDSLQ 168 (224)
T ss_pred CCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCce--EEEEEEcccc-------cCcCHHHHHHHHHHHh
Confidence 78999999999999888732 1336899999985 4554431110 1112446777888876
Q ss_pred cCCCCCCCCCCceeecCCC
Q 034345 77 SGQPVSSNQKPSIKWHPQT 95 (97)
Q Consensus 77 aG~~v~~~~t~~IKw~~~~ 95 (97)
-...=.+ ..++.|++++
T Consensus 169 lt~~k~V--aTP~nWkpg~ 185 (224)
T KOG0854|consen 169 LTDKKGV--ATPVNWKPGD 185 (224)
T ss_pred hhccccc--ccccccCCCC
Confidence 5544112 2238888775
No 78
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=90.87 E-value=0.35 Score=30.12 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=28.6
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
.|+..++++.||...+|++++++++.. ....|.|..
T Consensus 58 ~~~~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~~g~~ 93 (103)
T cd03001 58 ADVHQSLAQQYGVRGFPTIKVFGAGKN--SPQDYQGGR 93 (103)
T ss_pred CcchHHHHHHCCCCccCEEEEECCCCc--ceeecCCCC
Confidence 466778999999999999999987733 267788754
No 79
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=90.78 E-value=0.74 Score=32.25 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=38.0
Q ss_pred EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (97)
Q Consensus 13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~ 80 (97)
|=.|+..++|..||....|+.+++.... ..=+..|..+ ...+...|+++|+...
T Consensus 75 VDiD~~~~LA~~fgV~siPTLl~FkdGk---~v~~i~G~~~-----------k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 75 ADLEQSEAIGDRFGVFRFPATLVFTGGN---YRGVLNGIHP-----------WAELINLMRGLVEPQQ 128 (132)
T ss_pred EECCCCHHHHHHcCCccCCEEEEEECCE---EEEEEeCcCC-----------HHHHHHHHHHHhcCcC
Confidence 3457888999999999999888886543 2334445432 3367788988887643
No 80
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=0.34 Score=34.86 Aligned_cols=50 Identities=18% Similarity=0.401 Sum_probs=39.7
Q ss_pred EEEeChhhHHHHhCCccCceEEEEecCCCCCeeE-EEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQL-VYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l-~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
+=.|+..++|..|+.+-.|+++||+..- ++ +..|+.|.. .|+..|+..|.
T Consensus 99 vdtD~~~ela~~Y~I~avPtvlvfknGe----~~d~~vG~~~~~-----------~l~~~i~k~l~ 149 (150)
T KOG0910|consen 99 VDTDEHPELAEDYEISAVPTVLVFKNGE----KVDRFVGAVPKE-----------QLRSLIKKFLK 149 (150)
T ss_pred EccccccchHhhcceeeeeEEEEEECCE----EeeeecccCCHH-----------HHHHHHHHHhc
Confidence 4468999999999999999999997665 44 777776655 68888877663
No 81
>PTZ00051 thioredoxin; Provisional
Probab=90.55 E-value=0.36 Score=30.01 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=25.7
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
|+.+.+++.|+...+|+++++ ++|+ ..-++.|..
T Consensus 58 ~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~~ 91 (98)
T PTZ00051 58 DELSEVAEKENITSMPTFKVF-KNGS--VVDTLLGAN 91 (98)
T ss_pred cchHHHHHHCCCceeeEEEEE-eCCe--EEEEEeCCC
Confidence 445789999999999997666 6775 456788863
No 82
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=90.46 E-value=0.47 Score=30.55 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=22.9
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.++++.|+...+|+++++ ++|+ ..-+|.|.
T Consensus 61 ~~l~~~~~V~~~Pt~~~~-~~G~--~v~~~~G~ 90 (103)
T cd02985 61 MELCRREKIIEVPHFLFY-KDGE--KIHEEEGI 90 (103)
T ss_pred HHHHHHcCCCcCCEEEEE-eCCe--EEEEEeCC
Confidence 379999999999996555 7885 45567774
No 83
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=90.31 E-value=0.4 Score=30.28 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=29.3
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
.|+..++++.||...+|+++++.+.|+ ...+|.|..
T Consensus 59 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~--~~~~~~G~~ 94 (104)
T cd03004 59 CQKYESLCQQANIRAYPTIRLYPGNAS--KYHSYNGWH 94 (104)
T ss_pred CCchHHHHHHcCCCcccEEEEEcCCCC--CceEccCCC
Confidence 466778999999999999999988744 377888854
No 84
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=90.15 E-value=0.66 Score=29.72 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=28.4
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
..+++++|+...+|+++++ ++|+ ..-+..|. +..++..+|+.|
T Consensus 60 ~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~------------~~~~~~~~i~~~ 102 (102)
T cd02948 60 TIDTLKRYRGKCEPTFLFY-KNGE--LVAVIRGA------------NAPLLNKTITEL 102 (102)
T ss_pred CHHHHHHcCCCcCcEEEEE-ECCE--EEEEEecC------------ChHHHHHHHhhC
Confidence 5688999999999976666 5673 12233332 134788888754
No 85
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=89.84 E-value=0.36 Score=29.93 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=26.6
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
...+++.|+...+|+++++++++. ....|.|..
T Consensus 64 ~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~~g~~ 96 (105)
T cd02998 64 NKDLAKKYGVSGFPTLKFFPKGST--EPVKYEGGR 96 (105)
T ss_pred chhhHHhCCCCCcCEEEEEeCCCC--CccccCCcc
Confidence 468999999999999999998864 256777753
No 86
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=89.57 E-value=0.34 Score=30.62 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=26.1
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.|+...++++|+...+|+++++ ++|. ..-+|.|.
T Consensus 58 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~ 91 (101)
T cd03003 58 CGDDRMLCRSQGVNSYPSLYVF-PSGM--NPEKYYGD 91 (101)
T ss_pred CCccHHHHHHcCCCccCEEEEE-cCCC--CcccCCCC
Confidence 4666799999999999999999 5664 24556663
No 87
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=89.05 E-value=0.46 Score=30.48 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=27.4
Q ss_pred hcceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 8 FLMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 8 ~~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
.+.|-++ .|+..++|+.||...+|.+++ +| ++.+.|+.
T Consensus 43 ~i~~~~vd~~~~~e~a~~~~V~~vPt~vi---dG----~~~~~G~~ 81 (89)
T cd03026 43 NIEHEMIDGALFQDEVEERGIMSVPAIFL---NG----ELFGFGRM 81 (89)
T ss_pred CceEEEEEhHhCHHHHHHcCCccCCEEEE---CC----EEEEeCCC
Confidence 3444433 235567999999999999975 67 78999853
No 88
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=89.01 E-value=1 Score=32.79 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=26.6
Q ss_pred ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
+..++++.||...+|++.+++.... ...+|.|..
T Consensus 65 ~~~~l~~~~~V~~~Pt~~~f~~g~~--~~~~~~G~~ 98 (215)
T TIGR02187 65 EDKEEAEKYGVERVPTTIILEEGKD--GGIRYTGIP 98 (215)
T ss_pred ccHHHHHHcCCCccCEEEEEeCCee--eEEEEeecC
Confidence 6789999999999999999975431 124788953
No 89
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=88.84 E-value=0.73 Score=29.33 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=25.3
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
|....+++.|+...+|++++++. |. ..+|.|.
T Consensus 59 ~~~~~~~~~~~I~~~Pt~~l~~~-~~---~~~~~G~ 90 (104)
T cd03000 59 TAYSSIASEFGVRGYPTIKLLKG-DL---AYNYRGP 90 (104)
T ss_pred ccCHhHHhhcCCccccEEEEEcC-CC---ceeecCC
Confidence 45678999999999999999954 32 5677774
No 90
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=88.74 E-value=1.1 Score=26.28 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=25.3
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.+...++++.||...+|.++++++.. ..-.|.|.
T Consensus 49 ~~~~~~~~~~~~v~~~P~~~~~~~g~---~~~~~~g~ 82 (93)
T cd02947 49 VDENPELAEEYGVRSIPTFLFFKNGK---EVDRVVGA 82 (93)
T ss_pred CCCChhHHHhcCcccccEEEEEECCE---EEEEEecC
Confidence 34457899999999999999997554 34555553
No 91
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=88.55 E-value=2.3 Score=32.68 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=37.3
Q ss_pred cceeEEEeCh-hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 9 LMWLITLFQS-QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 9 ~~fpvL~D~~-q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
..+|+++|.= ....++|||. ||-+.|=.+| ++.|.|..-- ..=...+|++.++.
T Consensus 181 ~~~pi~vD~mdN~~~~~YgA~--PeRlyIi~~g----kv~Y~Gg~GP------~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 181 PQCPIVVDTMDNNFNKAYGAL--PERLYIIQDG----KVVYKGGPGP------FGYSPEELREWLEK 235 (237)
T ss_pred CCCCEEEEccCCHHHHHhCCC--cceEEEEECC----EEEEeCCCCC------CcCCHHHHHHHHHh
Confidence 5789999984 4566999984 6654444588 8999998432 22245578877765
No 92
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=88.54 E-value=0.79 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=24.1
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
...+++.||...+|+.+++. +|+ ...+|.|.+
T Consensus 64 ~~~~~~~~~i~~~Pt~~~~~-~g~--~~~~~~g~~ 95 (104)
T cd02997 64 HDALKEEYNVKGFPTFKYFE-NGK--FVEKYEGER 95 (104)
T ss_pred cHHHHHhCCCccccEEEEEe-CCC--eeEEeCCCC
Confidence 56889999999999977665 554 356777754
No 93
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=88.47 E-value=1.3 Score=31.35 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=28.9
Q ss_pred EEeChhhHHHHhCCcc------CceEEEEecCCCCCeeEEEeeecCCC
Q 034345 14 TLFQSQDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 14 L~D~~q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
=.|+..+++++|+... +|+++++. +|+ ..-++.|. ++.
T Consensus 87 Dvd~~~~la~~~~V~~~~~v~~~PT~ilf~-~Gk--~v~r~~G~-~~~ 130 (152)
T cd02962 87 DIGRFPNVAEKFRVSTSPLSKQLPTIILFQ-GGK--EVARRPYY-NDS 130 (152)
T ss_pred ECCCCHHHHHHcCceecCCcCCCCEEEEEE-CCE--EEEEEecc-ccC
Confidence 3477889999999988 99999986 664 36678884 444
No 94
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=87.99 E-value=1.5 Score=32.32 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=32.2
Q ss_pred EEEeChhhHHH-HhCCc-cCceEEEEecCCCCCeeEEEeeecCCC
Q 034345 13 ITLFQSQDVAR-DFGAA-CTPEFFLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 13 vL~D~~q~va~-a~gA~-~TPe~fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
+++|+.+ +|+ +++-+ ..--+.|+|++|+ ++.+--|++.++
T Consensus 129 ~vlD~~g-vak~AWqL~e~~SaivVlDk~G~--VkfvkeGaLt~a 170 (184)
T COG3054 129 FVLDSNG-VAKNAWQLKEESSAVVVLDKDGR--VKFVKEGALTQA 170 (184)
T ss_pred eEEccch-hhhhhhccccccceEEEEcCCCc--EEEEecCCccHH
Confidence 7889998 666 99954 7888999999996 677777877555
No 95
>PF13728 TraF: F plasmid transfer operon protein
Probab=87.54 E-value=1.4 Score=32.67 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=27.8
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID 53 (97)
+..+++.||...||..||+++++.. +..+-.|-++
T Consensus 172 ~~g~~~~l~v~~~Pal~Lv~~~~~~-~~pv~~G~~s 206 (215)
T PF13728_consen 172 DPGQAKRLGVKVTPALFLVNPNTKK-WYPVSQGFMS 206 (215)
T ss_pred CHHHHHHcCCCcCCEEEEEECCCCe-EEEEeeecCC
Confidence 4779999999999999999999843 4556666553
No 96
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=86.82 E-value=1.2 Score=27.50 Aligned_cols=25 Identities=20% Similarity=0.596 Sum_probs=20.7
Q ss_pred eChhhHHHHhCCccCceEEEEecCCC
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGR 41 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~ 41 (97)
++..++++.|+...+|++++++ +|+
T Consensus 55 ~~~~~~~~~~~i~~~Pt~~~~~-~g~ 79 (97)
T cd02984 55 EELPEISEKFEITAVPTFVFFR-NGT 79 (97)
T ss_pred ccCHHHHHhcCCccccEEEEEE-CCE
Confidence 4556889999999999999995 674
No 97
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=85.67 E-value=4.2 Score=26.38 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=34.4
Q ss_pred EEeChh-hHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHH
Q 034345 14 TLFQSQ-DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAI 72 (97)
Q Consensus 14 L~D~~q-~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai 72 (97)
-+|.+. ++++.|+...+|+++++.. |+ ..-++.|..+... ..-+...|++++
T Consensus 60 ~vd~~~~~l~~~~~i~~~Pt~~~f~~-G~--~v~~~~G~~~~~~----~~~~~~~l~~~l 112 (113)
T cd02957 60 KINAEKAFLVNYLDIKVLPTLLVYKN-GE--LIDNIVGFEELGG----DDFTTEDLEKFL 112 (113)
T ss_pred EEEchhhHHHHhcCCCcCCEEEEEEC-CE--EEEEEecHHHhCC----CCCCHHHHHHHh
Confidence 345544 9999999999999888864 53 3456777655431 444566676654
No 98
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=84.91 E-value=2.7 Score=28.58 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=40.4
Q ss_pred EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
|=.|+..++++.||....|+++++.. |+ ..-+..|+.|...- .....++..+-+.|+-
T Consensus 52 VDvD~~~~la~~~~V~~iPTf~~fk~-G~--~v~~~~G~~~~~~~-~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 52 VDIDEVPDFNKMYELYDPPTVMFFFR-NK--HMKIDLGTGNNNKI-NWVFEDKQEFIDIIET 109 (114)
T ss_pred EECCCCHHHHHHcCCCCCCEEEEEEC-CE--EEEEEcCCCCCceE-EEecCcHHHHHHHHHH
Confidence 44688999999999999999999974 53 35566688887742 2223345566665544
No 99
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=84.28 E-value=1.1 Score=37.87 Aligned_cols=24 Identities=13% Similarity=0.447 Sum_probs=21.9
Q ss_pred hhhHHHHhCCccCceEEEEecCCC
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGR 41 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~ 41 (97)
.++++++||...+|+++++|++|+
T Consensus 523 ~~~l~~~~~v~g~Pt~~~~~~~G~ 546 (571)
T PRK00293 523 DVALLKHYNVLGLPTILFFDAQGQ 546 (571)
T ss_pred hHHHHHHcCCCCCCEEEEECCCCC
Confidence 368999999999999999999995
No 100
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=83.92 E-value=2.8 Score=25.77 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=25.6
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
..+++..++...+|+++++.+++.. -..+|.|..
T Consensus 62 ~~~~~~~~~~~~~Pt~~~~~~~~~~-~~~~~~g~~ 95 (104)
T cd02995 62 ANDVPSEFVVDGFPTILFFPAGDKS-NPIKYEGDR 95 (104)
T ss_pred chhhhhhccCCCCCEEEEEcCCCcC-CceEccCCc
Confidence 3468889999999999999877611 157788864
No 101
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=83.66 E-value=1.5 Score=27.96 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=29.2
Q ss_pred cceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 9 LMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 9 ~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
+.|..+ .|...+++++||.+..|+.+++ ++|+. ....|.|.
T Consensus 57 ~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~-~~g~~-~~~~~~g~ 98 (108)
T cd02996 57 VVWGKVDCDKESDIADRYRINKYPTLKLF-RNGMM-MKREYRGQ 98 (108)
T ss_pred EEEEEEECCCCHHHHHhCCCCcCCEEEEE-eCCcC-cceecCCC
Confidence 444433 6778899999999999999999 45631 13666663
No 102
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=82.35 E-value=1.3 Score=33.06 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=25.7
Q ss_pred cceeEEEeChhhHHHHhCCccCce------EEEEecCC
Q 034345 9 LMWLITLFQSQDVARDFGAACTPE------FFLFKKDG 40 (97)
Q Consensus 9 ~~fpvL~D~~q~va~a~gA~~TPe------~fvld~~g 40 (97)
+++|+|.|.+.++++.||.-..=+ -|+||++|
T Consensus 97 ~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~g 134 (196)
T KOG0852|consen 97 LNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDG 134 (196)
T ss_pred cccceeeccchhhHHhcCceecCCCcceeeeEEEcccc
Confidence 569999999999999999654333 47788877
No 103
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=82.21 E-value=2.8 Score=28.48 Aligned_cols=38 Identities=29% Similarity=0.503 Sum_probs=28.4
Q ss_pred eEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 12 pvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
-+-.|+.+++|..||....|++.++.. |+ ..-+..|.+
T Consensus 66 kVdid~~~~la~~f~V~sIPTli~fkd-Gk--~v~~~~G~~ 103 (111)
T cd02965 66 VVGRADEQALAARFGVLRTPALLFFRD-GR--YVGVLAGIR 103 (111)
T ss_pred EEECCCCHHHHHHcCCCcCCEEEEEEC-CE--EEEEEeCcc
Confidence 355688889999999999999988864 53 244556743
No 104
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=81.50 E-value=2.4 Score=28.26 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.4
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.|+.+++|+.|+...+|++..+ ++|+ ......|+
T Consensus 60 vde~~~~~~~~~V~~~PTf~f~-k~g~--~~~~~vGa 93 (106)
T KOG0907|consen 60 VDELEEVAKEFNVKAMPTFVFY-KGGE--EVDEVVGA 93 (106)
T ss_pred cccCHhHHHhcCceEeeEEEEE-ECCE--EEEEEecC
Confidence 3555999999999999999999 5554 37778886
No 105
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=80.42 E-value=2.7 Score=25.72 Aligned_cols=24 Identities=21% Similarity=0.703 Sum_probs=18.6
Q ss_pred HHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 22 ARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 22 a~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
...||...+|..++ +| +++|.|++
T Consensus 42 ~~~ygv~~vPalvI---ng----~~~~~G~~ 65 (76)
T PF13192_consen 42 IEKYGVMSVPALVI---NG----KVVFVGRV 65 (76)
T ss_dssp HHHTT-SSSSEEEE---TT----EEEEESS-
T ss_pred HHHcCCCCCCEEEE---CC----EEEEEecC
Confidence 38999999999954 57 89999963
No 106
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=80.05 E-value=1.7 Score=32.85 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=26.8
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeE-EEeeec
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQL-VYHGQF 52 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l-~Y~G~I 52 (97)
+++.++++++|.+-||.+|+.|.+| ++ .-.|..
T Consensus 206 ~~n~~l~~~lGv~GTPaiv~~d~~G----~~~~v~G~~ 239 (251)
T PRK11657 206 ADNQKLMDDLGANATPAIYYMDKDG----TLQQVVGLP 239 (251)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCC----CEEEecCCC
Confidence 5567799999999999999999888 44 556764
No 107
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=79.76 E-value=2.5 Score=27.26 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=23.9
Q ss_pred hhHHH-HhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 19 QDVAR-DFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 19 q~va~-a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
..+++ .|+...+|+++++++++. ....|.|.
T Consensus 67 ~~~~~~~~~v~~~Pti~~f~~~~~--~~~~y~g~ 98 (109)
T cd02993 67 REFAKEELQLKSFPTILFFPKNSR--QPIKYPSE 98 (109)
T ss_pred hhhHHhhcCCCcCCEEEEEcCCCC--CceeccCC
Confidence 35665 599999999999988764 25778873
No 108
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=79.64 E-value=2.6 Score=28.16 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=25.9
Q ss_pred eChhhHH-HHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 16 FQSQDVA-RDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 16 D~~q~va-~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
|....++ +.|+....|++.++ ++|+ ...+|.|..
T Consensus 70 d~~~~l~~~~~~I~~~PTl~lf-~~g~--~~~~y~G~~ 104 (113)
T cd03006 70 WWPQGKCRKQKHFFYFPVIHLY-YRSR--GPIEYKGPM 104 (113)
T ss_pred CCChHHHHHhcCCcccCEEEEE-ECCc--cceEEeCCC
Confidence 4455677 58999999999999 5664 268899864
No 109
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=79.29 E-value=15 Score=24.13 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=29.2
Q ss_pred hccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCC
Q 034345 8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDD 54 (97)
Q Consensus 8 ~~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd 54 (97)
.+.|. +=.|+.+++++.|+...+|++.++. +|+ ..-++.|.-+-
T Consensus 53 ~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk-~G~--~v~~~~g~~~~ 97 (113)
T cd02989 53 ETKFIKVNAEKAPFLVEKLNIKVLPTVILFK-NGK--TVDRIVGFEEL 97 (113)
T ss_pred CCEEEEEEcccCHHHHHHCCCccCCEEEEEE-CCE--EEEEEECcccc
Confidence 34443 3456667799999999999998886 442 23356665433
No 110
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=79.20 E-value=6.5 Score=24.01 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=22.1
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
+...+.+||...+|.+++ +| ++.+.|.+
T Consensus 38 ~~~~a~~~~v~~vPti~i---~G----~~~~~G~~ 65 (76)
T TIGR00412 38 DMNEILEAGVTATPGVAV---DG----ELVIMGKI 65 (76)
T ss_pred CHHHHHHcCCCcCCEEEE---CC----EEEEEecc
Confidence 355688899999998888 77 56688873
No 111
>PTZ00102 disulphide isomerase; Provisional
Probab=78.68 E-value=3.3 Score=32.83 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=34.9
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
|.....++.|+...+|+.++++++++ ..++|.|..+ ...+.+-|++...
T Consensus 418 ~~~~~~~~~~~v~~~Pt~~~~~~~~~--~~~~~~G~~~-----------~~~l~~~i~~~~~ 466 (477)
T PTZ00102 418 TANETPLEEFSWSAFPTILFVKAGER--TPIPYEGERT-----------VEGFKEFVNKHAT 466 (477)
T ss_pred CCCccchhcCCCcccCeEEEEECCCc--ceeEecCcCC-----------HHHHHHHHHHcCC
Confidence 34456788999999999999998874 2357888543 2356776766554
No 112
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=78.32 E-value=6.6 Score=26.74 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=25.3
Q ss_pred eeEEEeChh--hHHH--------HhCCccCceEEEEecCCCCCeeEEEee
Q 034345 11 WLITLFQSQ--DVAR--------DFGAACTPEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 11 fpvL~D~~q--~va~--------a~gA~~TPe~fvld~~g~~~~~l~Y~G 50 (97)
.+|-+|.+. ++++ .||...+|..+++|++| ++.|.+
T Consensus 52 v~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G----~~~~~~ 97 (124)
T cd02955 52 VPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL----KPFFGG 97 (124)
T ss_pred EEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC----CEEeee
Confidence 356666543 4544 25888999999999999 455554
No 113
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=78.18 E-value=4.5 Score=26.57 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.8
Q ss_pred ChhhHHHHhCCccCceEEEEecCC
Q 034345 17 QSQDVARDFGAACTPEFFLFKKDG 40 (97)
Q Consensus 17 ~~q~va~a~gA~~TPe~fvld~~g 40 (97)
..+++++.||...+|+++++.+..
T Consensus 66 ~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 66 ENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred hhHHHHHhCCCCCCCEEEEECCCC
Confidence 456799999999999999997765
No 114
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=77.97 E-value=5.5 Score=28.90 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=22.4
Q ss_pred EEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 33 FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 33 ~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
-||+|++|. +.-+|...+.- ....++.+|+.+|+
T Consensus 149 KFLv~~~G~--vv~r~~~~~~p---------~~~~i~~~i~~~l~ 182 (183)
T PRK10606 149 KFLVGRDGQ--VIQRFSPDMTP---------EDPIVMESIKLALA 182 (183)
T ss_pred EEEECCCCc--EEEEECCCCCC---------CHHHHHHHHHHHhc
Confidence 799999996 34444332211 24469999999884
No 115
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=77.06 E-value=4.9 Score=30.20 Aligned_cols=32 Identities=25% Similarity=0.562 Sum_probs=25.0
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEee
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G 50 (97)
.|+..++++.|+...+|++++++ +|+ .+.|.+
T Consensus 92 ~~~~~~l~~~~~I~~~PTl~~f~-~G~---~v~~~~ 123 (224)
T PTZ00443 92 ATRALNLAKRFAIKGYPTLLLFD-KGK---MYQYEG 123 (224)
T ss_pred CcccHHHHHHcCCCcCCEEEEEE-CCE---EEEeeC
Confidence 35667899999999999999999 553 555543
No 116
>PTZ00102 disulphide isomerase; Provisional
Probab=74.17 E-value=6.6 Score=31.17 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=28.1
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.+...++++.||....|+.++++..+ .+.|.|.
T Consensus 92 ~~~~~~l~~~~~i~~~Pt~~~~~~g~----~~~y~g~ 124 (477)
T PTZ00102 92 ATEEMELAQEFGVRGYPTIKFFNKGN----PVNYSGG 124 (477)
T ss_pred CCCCHHHHHhcCCCcccEEEEEECCc----eEEecCC
Confidence 35778999999999999999998776 5689885
No 117
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=73.43 E-value=5.7 Score=30.97 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=27.5
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCe-eEEEeeecC
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPF-QLVYHGQFD 53 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~-~l~Y~G~ID 53 (97)
.|...++++.||...+|+++++...+ . ...|.|..+
T Consensus 61 ~~~~~~l~~~~~i~~~Pt~~~~~~g~---~~~~~~~g~~~ 97 (462)
T TIGR01130 61 ATEEKDLAQKYGVSGYPTLKIFRNGE---DSVSDYNGPRD 97 (462)
T ss_pred CCCcHHHHHhCCCccccEEEEEeCCc---cceeEecCCCC
Confidence 34566899999999999999986444 2 378988653
No 118
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=73.27 E-value=6.8 Score=30.01 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=26.5
Q ss_pred hhhHHHHhC--CccCceEEEEecCCCCCeeEEEeee
Q 034345 18 SQDVARDFG--AACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 18 ~q~va~a~g--A~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
...+-+++| -.+|.-+||+|.+| +|||.|-
T Consensus 203 ~~~iRe~Lgi~N~~~GYvyLVD~~g----rIRWags 234 (252)
T PF05176_consen 203 SDDIREALGINNSYVGYVYLVDPNG----RIRWAGS 234 (252)
T ss_pred cHHHHHHhCCCCCCcCeEEEECCCC----eEEeCcc
Confidence 568889998 55999999999999 8999996
No 119
>smart00594 UAS UAS domain.
Probab=72.64 E-value=3.8 Score=27.22 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=26.7
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID 53 (97)
.+..+++..|++...|...+++++|.. -...-.++|-
T Consensus 73 ~eg~~l~~~~~~~~~P~~~~l~~~~g~-~~~~~~~~~~ 109 (122)
T smart00594 73 SEGQRVSQFYKLDSFPYVAIVDPRTGQ-RVIEWVGVVE 109 (122)
T ss_pred hhHHHHHHhcCcCCCCEEEEEecCCCc-eeEEEecccc
Confidence 345678999999999999999999721 1334445543
No 120
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=72.09 E-value=4.3 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCc
Q 034345 67 DIRLAIECVLSGQPVSSNQKPS 88 (97)
Q Consensus 67 ~L~~Ai~alLaG~~v~~~~t~~ 88 (97)
-++++|++.-+|++|.....|+
T Consensus 36 ~~~~~I~~~~aG~pVd~~~lP~ 57 (59)
T smart00685 36 QFDDAIKAARAGRPVDLSELPP 57 (59)
T ss_pred hHHHHHHHHHCCCCCChhcCCC
Confidence 4778999999999999988764
No 121
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=71.65 E-value=2 Score=30.61 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=18.7
Q ss_pred eChhhHHHHhCCccCceEEEEecCC
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDG 40 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g 40 (97)
..++++|+.+|.+.+|+.+++|.+.
T Consensus 134 ~~D~~la~~m~I~~~Ptlvi~~~~~ 158 (176)
T PF13743_consen 134 QEDQQLAREMGITGFPTLVIFNENN 158 (176)
T ss_dssp HHHHHHHHHTT-SSSSEEEEE----
T ss_pred HHHHHHHHHcCCCCCCEEEEEeccc
Confidence 5678999999999999999999443
No 122
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=71.64 E-value=2.8 Score=27.44 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=19.9
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID 53 (97)
+.+.++.+|...||+++| +| + .+.|..+
T Consensus 118 ~~~~~~~~gi~gtPt~~v---~g----~-~~~G~~~ 145 (154)
T cd03023 118 NRQLARALGITGTPAFII---GD----T-VIPGAVP 145 (154)
T ss_pred HHHHHHHcCCCcCCeEEE---CC----E-EecCCCC
Confidence 356778999999999776 35 3 5677543
No 123
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=70.01 E-value=11 Score=24.89 Aligned_cols=29 Identities=14% Similarity=0.389 Sum_probs=21.8
Q ss_pred EEEeChh-hHHHHhCCcc--CceEEEEecCCC
Q 034345 13 ITLFQSQ-DVARDFGAAC--TPEFFLFKKDGR 41 (97)
Q Consensus 13 vL~D~~q-~va~a~gA~~--TPe~fvld~~g~ 41 (97)
+-+|.+. ...+.|+... +|+++++|++|+
T Consensus 57 v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 57 VNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred EEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 4445554 4567888764 999999999996
No 124
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=70.00 E-value=6 Score=32.90 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=29.0
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
+++.++++.||..+.|.+.+++.+|+. ..++|+|..
T Consensus 406 ~~~~~~~~~~~v~~~P~~~i~~~~~~~-~~i~f~g~P 441 (555)
T TIGR03143 406 GEEPESETLPKITKLPTVALLDDDGNY-TGLKFHGVP 441 (555)
T ss_pred ccchhhHhhcCCCcCCEEEEEeCCCcc-cceEEEecC
Confidence 456789999999999999999877642 259999973
No 125
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=69.89 E-value=9.2 Score=27.93 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=22.3
Q ss_pred eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 32 EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 32 e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
+-||+|++|+ +.-||. ... +-.+++.+|+++|+.
T Consensus 129 tKFLvdr~G~--VV~Rf~----p~t-------~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 129 TKFLVDRDGN--VVKRFS----PKT-------KPEDIELAIEKLLAE 162 (162)
T ss_pred EEEEEcCCCc--EEEeeC----CCC-------ChhhHHHHHHHHhcC
Confidence 5799999995 344443 221 123677899999863
No 126
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=69.17 E-value=13 Score=24.70 Aligned_cols=21 Identities=38% Similarity=0.890 Sum_probs=16.3
Q ss_pred hhhHHHHhCCccCceEEEEecCCC
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGR 41 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~ 41 (97)
..+.++.+|...||.+|| +|+
T Consensus 125 ~~~~~~~~~i~~tPt~~i---nG~ 145 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFI---NGK 145 (162)
T ss_dssp HHHHHHHHT-SSSSEEEE---TTC
T ss_pred HHHHHHHcCCccccEEEE---CCE
Confidence 346679999999999999 773
No 127
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=69.04 E-value=3.8 Score=28.24 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=23.1
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.++.+.|.++|+..+|+++| +| +....|.
T Consensus 154 ~~~~~~a~~~gv~GvP~~vv---~g----~~~~~G~ 182 (193)
T PF01323_consen 154 EEDTAEARQLGVFGVPTFVV---NG----KYRFFGA 182 (193)
T ss_dssp HHHHHHHHHTTCSSSSEEEE---TT----TEEEESC
T ss_pred HHHHHHHHHcCCcccCEEEE---CC----EEEEECC
Confidence 34567789999999999999 55 5677776
No 128
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.28 E-value=6.3 Score=28.68 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=31.0
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL 76 (97)
..+.+.|+.+|...||.+||-++ .|.|.++- ..|..+|+..+
T Consensus 202 ~~~~~~a~~~gv~gTPt~~v~~~--------~~~g~~~~-----------~~l~~~i~~~~ 243 (244)
T COG1651 202 AKNYKLAQQLGVNGTPTFIVNGK--------LVPGLPDL-----------DELKAIIDEAL 243 (244)
T ss_pred HHHHHHHHhcCCCcCCeEEECCe--------eecCCCCH-----------HHHHHHHHHhh
Confidence 45678999999999999999633 57777652 25777776654
No 129
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=68.23 E-value=18 Score=27.82 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=32.1
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
...|+.+|.+.||..||++++.+. +.-.=.|.|. ...|.+=|..++.+
T Consensus 203 ~gqa~~l~v~~~Pal~Lv~~~t~~-~~pv~~G~iS-----------~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 203 SGQAQHLGVKYFPALYLVNPKSQK-MSPLAYGFIS-----------QDELKERILNVLTQ 250 (256)
T ss_pred hHHHHhcCCccCceEEEEECCCCc-EEEEeeccCC-----------HHHHHHHHHHHHhc
Confidence 457899999999999999999642 2334445442 33566655555543
No 130
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=68.00 E-value=10 Score=31.76 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=38.9
Q ss_pred hhHHHHh--CCccCceEEEEecCCCCCeeEEEeeecCCCCC-CCCCCCcHHHHHHHHH
Q 034345 19 QDVARDF--GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIE 73 (97)
Q Consensus 19 q~va~a~--gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~-~~~~~~t~~~L~~Ai~ 73 (97)
...+++| |--+|=+...+|++| .+.+.||.||... .+++.+.-..++.+|.
T Consensus 484 e~T~~~f~dGw~~TGDlg~~d~dG----~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~ 537 (660)
T PLN02861 484 DLTEEVLIDGWFHTGDIGEWQPNG----AMKIIDRKKNIFKLSQGEYVAVENLENTYS 537 (660)
T ss_pred HHHHhhhhccCcccCceEEECCCC----cEEEEeccccceEcCCCeEEcHHHHHHHHh
Confidence 3455666 557899999999999 6999999999975 3566666667776653
No 131
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=67.38 E-value=10 Score=25.62 Aligned_cols=29 Identities=34% Similarity=0.644 Sum_probs=21.7
Q ss_pred eChhhHHHHhCCc-cCceEEEEecCCCCCeeEEEe
Q 034345 16 FQSQDVARDFGAA-CTPEFFLFKKDGRRPFQLVYH 49 (97)
Q Consensus 16 D~~q~va~a~gA~-~TPe~fvld~~g~~~~~l~Y~ 49 (97)
+-+.++|..||.. -+|.++||... +++|+
T Consensus 64 ~vSn~IAe~~~V~HeSPQ~ili~~g-----~~v~~ 93 (105)
T PF11009_consen 64 PVSNAIAEDFGVKHESPQVILIKNG-----KVVWH 93 (105)
T ss_dssp HHHHHHHHHHT----SSEEEEEETT-----EEEEE
T ss_pred hhHHHHHHHhCCCcCCCcEEEEECC-----EEEEE
Confidence 4577899999988 89999999654 68887
No 132
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=66.12 E-value=18 Score=24.56 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=36.8
Q ss_pred EeChh--hHHHHhCCc--cCceEEEEecCCCCCeeEE-EeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345 15 LFQSQ--DVARDFGAA--CTPEFFLFKKDGRRPFQLV-YHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS 82 (97)
Q Consensus 15 ~D~~q--~va~a~gA~--~TPe~fvld~~g~~~~~l~-Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~ 82 (97)
.|.++ .+++.||.. ..|.+++++.++. +.. +.|.+ +...+..=++.+++|+-..
T Consensus 63 vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~---KY~~~~~~~-----------t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 63 TEAGAQLDLEEALNIGGFGYPAMVAINFRKM---KFATLKGSF-----------SEDGINEFLRELSYGRGPT 121 (130)
T ss_pred EeCcccHHHHHHcCCCccCCCEEEEEecccC---ccccccCcc-----------CHHHHHHHHHHHHcCCccc
Confidence 34444 399999975 5999999999762 222 44654 2346777788899997533
No 133
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=66.10 E-value=9.3 Score=25.71 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=32.2
Q ss_pred hHHHHhCCc-cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345 20 DVARDFGAA-CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (97)
Q Consensus 20 ~va~a~gA~-~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL 76 (97)
.+-+.|+.. ..-.++|++++|. ++++|.+.+|-. .|-+.||++-
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~--vK~r~~~p~~~~-----------~lf~~ID~MP 112 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGG--VKLRWPEPIDPE-----------ELFDTIDAMP 112 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCc--EEEecCCCCCHH-----------HHHHHHhCCc
Confidence 667888844 4567899999996 788877766433 6778887753
No 134
>PLN03051 acyl-activating enzyme; Provisional
Probab=64.08 E-value=9 Score=30.51 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=33.6
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~ 73 (97)
+|=+...+|.+| .+.+.||.||.-...+..+.-.+++++|.
T Consensus 360 ~TGDlg~~d~dG----~l~~~gR~~d~ik~~G~~v~p~EIE~~l~ 400 (499)
T PLN03051 360 RHGDIMKRTPGG----YFCVQGRADDTMNLGGIKTSSVEIERACD 400 (499)
T ss_pred ecCCeEEECCCC----cEEEEeccCCEEeeCCEECCHHHHHHHHH
Confidence 788888899999 69999999999766777776777777664
No 135
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=63.37 E-value=7.1 Score=30.99 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=33.3
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|++.+.+|.+| .+.+.||.||.....+..+.-..++.+|.+
T Consensus 278 ~tgD~g~~d~~G----~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~ 319 (386)
T TIGR02372 278 DLQDRLAWDKDG----GFTILGRKDEILQVGGVNVSPGHVRDILER 319 (386)
T ss_pred ecCceEEEcCCC----cEEEecccCCEEEECCEEEcHHHHHHHHHc
Confidence 578888999999 699999999997666666666677776654
No 136
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=62.11 E-value=15 Score=24.85 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=28.4
Q ss_pred HHhhhhcc---eeEEEe--ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345 3 LELYLFLM---WLITLF--QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (97)
Q Consensus 3 ~~~~~~~~---fpvL~D--~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID 53 (97)
=||-+.++ .+.+++ ...+++..||..++|...++... .|.|.|-
T Consensus 51 PEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g-------~~lG~i~ 99 (107)
T PF07449_consen 51 PELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDG-------RYLGAIE 99 (107)
T ss_dssp HHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETT-------EEEEEEE
T ss_pred HHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECC-------EEEEEec
Confidence 35554444 333444 56688899999999999888654 3566653
No 137
>PLN02614 long-chain acyl-CoA synthetase
Probab=61.78 E-value=15 Score=30.92 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=39.2
Q ss_pred hhHHHHh--CCccCceEEEEecCCCCCeeEEEeeecCCCCC-CCCCCCcHHHHHHHHHH
Q 034345 19 QDVARDF--GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 19 q~va~a~--gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~-~~~~~~t~~~L~~Ai~a 74 (97)
...+++| |=-+|=+..-+|.+| .|.+.||.||... ..+..+.-..++.+|.+
T Consensus 487 e~T~~~f~dGw~~TGDlg~~d~dG----~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~ 541 (666)
T PLN02614 487 DLTKEVLIDGWLHTGDVGEWQPNG----SMKIIDRKKNIFKLSQGEYVAVENIENIYGE 541 (666)
T ss_pred HHhhhhhccCCcccceEEEEcCCC----CEEEEEcchhceecCCCeeecHHHHHHHHhc
Confidence 3556666 556899999999999 6999999999975 45676666777766543
No 138
>PHA02278 thioredoxin-like protein
Probab=61.24 E-value=14 Score=24.09 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=22.3
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.++++.|+...+|+++++.. |+ ..=+..|.
T Consensus 62 ~~l~~~~~I~~iPT~i~fk~-G~--~v~~~~G~ 91 (103)
T PHA02278 62 EKAVKLFDIMSTPVLIGYKD-GQ--LVKKYEDQ 91 (103)
T ss_pred HHHHHHCCCccccEEEEEEC-CE--EEEEEeCC
Confidence 57999999999999988864 53 23355664
No 139
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=60.67 E-value=23 Score=24.18 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=40.2
Q ss_pred EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
|=+|+.+++++.|+...-|++.++. +|+- ...=-|.-|++.- +..-.++.++-+-|+.+-.|
T Consensus 52 VDVDev~dva~~y~I~amPtfvffk-ngkh--~~~d~gt~~~~k~-~~~~~~k~~~idi~e~~yr~ 113 (114)
T cd02986 52 VDVDKVPVYTQYFDISYIPSTIFFF-NGQH--MKVDYGSPDHTKF-VGSFKTKQDFIDLIEVIYRG 113 (114)
T ss_pred EeccccHHHHHhcCceeCcEEEEEE-CCcE--EEEecCCCCCcEE-EEEcCchhHHHHHHHHHHcC
Confidence 4468999999999999999998664 4431 3333455555521 22233556777777776554
No 140
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=59.99 E-value=14 Score=24.71 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=24.1
Q ss_pred hhHHHHhCCccCceEEEEecCCCC-CeeEEEeeec
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRR-PFQLVYHGQF 52 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~-~~~l~Y~G~I 52 (97)
.++|.++++...|.+.+|+.++++ .+.-+..|.+
T Consensus 66 ~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~ 100 (116)
T cd02991 66 YRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLI 100 (116)
T ss_pred HHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCC
Confidence 679999999999999999655532 1233555544
No 141
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=59.93 E-value=17 Score=28.94 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=34.7
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|=+.+.+|.+| .+.+.||.||....++..+.-.+++.+|.+
T Consensus 411 ~~~TGDl~~~~~~g----~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~ 454 (547)
T PRK06087 411 WYYSGDLCRMDEAG----YIKITGRKKDIIVRGGENISSREVEDILLQ 454 (547)
T ss_pred CcCcCceEEECCCC----CEEEEecchhhhhcCCEEECHHHHHHHHHh
Confidence 45788889999998 699999999986556666667778887755
No 142
>PLN02736 long-chain acyl-CoA synthetase
Probab=59.77 E-value=17 Score=30.15 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=37.7
Q ss_pred hhHHHHh---CCccCceEEEEecCCCCCeeEEEeeecCCCCC-CCCCCCcHHHHHHHHH
Q 034345 19 QDVARDF---GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIE 73 (97)
Q Consensus 19 q~va~a~---gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~-~~~~~~t~~~L~~Ai~ 73 (97)
+..+++| |--+|=+..-+|.+| .+.+.||.||... .++..+.-.+++.++.
T Consensus 477 ~~t~~~~~~dgw~~TGDlg~~d~dG----~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~ 531 (651)
T PLN02736 477 VQTREVIDEDGWLHTGDIGLWLPGG----RLKIIDRKKNIFKLAQGEYIAPEKIENVYA 531 (651)
T ss_pred HHHHhhhccCCCeeccceEEEcCCC----cEEEEEechhheEcCCCcEechHHHHHHHh
Confidence 3556666 455899999999999 6999999999974 3466665666666553
No 143
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=59.75 E-value=10 Score=30.80 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=32.6
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-+|++| .+.|.||+||.-...+..+.-.+++++|..
T Consensus 442 ~TGDlg~~~~dG----~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~ 483 (600)
T PRK08279 442 NTGDLMRDDGFG----HAQFVDRLGDTFRWKGENVATTEVENALSG 483 (600)
T ss_pred eecceEEEcCCc----cEEEecccCCeEEECCcccCHHHHHHHHhc
Confidence 566777789998 799999999986656666666777777654
No 144
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=59.11 E-value=14 Score=27.12 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=24.1
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~ 79 (97)
.++..+||+|++|. |...|.+ ... ...+.+.|+.+++++
T Consensus 169 ~Hs~~~~lid~~G~--~~~~~~~----~~~-------~~~i~~~l~~l~~~~ 207 (207)
T COG1999 169 DHSAGFYLIDADGR--FLGTYDY----GEP-------PEEIAADLKKLLKER 207 (207)
T ss_pred eeeeEEEEECCCCe--EEEEecC----CCC-------hHHHHHHHHHHhhcC
Confidence 35778899999994 3333332 211 236777787777653
No 145
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=58.73 E-value=12 Score=30.34 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=34.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|=+...+|.+| .+.+.||.||.-..++..+.-.+++.+|...
T Consensus 412 ~~TGD~g~~d~~G----~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 455 (539)
T PRK06334 412 YVTGDLGYVDRHG----ELFLKGRLSRFVKIGAEMVSLEALESILMEG 455 (539)
T ss_pred EECCCEEEECCCC----eEEEEeccCCeEEECCEEECHHHHHHHHHHc
Confidence 3566677888888 6999999999866667777777888877654
No 146
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=57.95 E-value=16 Score=26.52 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=24.1
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.|...++++.||...+|++++. .+| + .|.|.
T Consensus 172 ~~~~~~~~~~~~V~~vPtl~i~-~~~----~-~~~G~ 202 (215)
T TIGR02187 172 ANENPDLAEKYGVMSVPKIVIN-KGV----E-EFVGA 202 (215)
T ss_pred CCCCHHHHHHhCCccCCEEEEe-cCC----E-EEECC
Confidence 3477889999999999998875 455 3 38885
No 147
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=56.64 E-value=8.3 Score=26.88 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=20.9
Q ss_pred eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
+.+.+.|.+.|+..||.++| +| +....|..
T Consensus 162 ~~~~~~a~~~gv~G~Pt~vv---~g----~~~~~G~~ 191 (201)
T cd03024 162 RADEARARQLGISGVPFFVF---NG----KYAVSGAQ 191 (201)
T ss_pred HHHHHHHHHCCCCcCCEEEE---CC----eEeecCCC
Confidence 34456778899999998888 44 34455654
No 148
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=56.33 E-value=38 Score=22.47 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=30.8
Q ss_pred EEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345 33 FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (97)
Q Consensus 33 ~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~ 80 (97)
+-++|.+.. +++|+|........... ....+..+|+++|++=|
T Consensus 107 i~i~D~~~~---~~vW~g~a~~~~~~~~~--~~~~i~~~V~~i~~~fP 149 (151)
T PF13590_consen 107 IDIIDAKTN---KVVWRGTASGRLSDNAD--REEAIPKAVNKIFEQFP 149 (151)
T ss_pred EEEEeCCCC---CEEEEEEEEeccCCCcC--HHHHHHHHHHHHHHhCC
Confidence 456777664 89999998766432222 67789999999998644
No 149
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=55.84 E-value=11 Score=31.92 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=45.4
Q ss_pred hhccee-----EEEeChhhHHHHh-C-CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 7 LFLMWL-----ITLFQSQDVARDF-G-AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 7 ~~~~fp-----vL~D~~q~va~a~-g-A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
.+.+|| |.-|++ ...++| + -=+|=+.+..|.+| -+.++||-||--...+-.....++++||.+.
T Consensus 371 i~~~~p~~~~~~w~d~e-r~~~~y~~~~y~tGD~~~~DedG----y~~i~GR~DDvI~vsG~Rig~~EvE~~l~~h 441 (528)
T COG0365 371 VRLPWPGMALTYWNDPE-RYKEAYFGRWYRTGDWAERDEDG----YFWLHGRSDDVIKVSGKRIGPLEIESVLLAH 441 (528)
T ss_pred EeCCCchhhhhhhCCHH-HHHHHHhhceeecCceeEEccCC----CEEEEeeccceEeccCeeccHHHHHHHHHhC
Confidence 344555 444553 444444 4 46899999999999 7999999999865555666777888877554
No 150
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=55.34 E-value=13 Score=30.41 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=34.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||.||.-...+..+.-.+++.+|..
T Consensus 477 ~~TGDl~~~d~dG----~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~ 519 (625)
T TIGR02188 477 YFTGDGARRDKDG----YIWITGRVDDVINVSGHRLGTAEIESALVS 519 (625)
T ss_pred EECCceEEEcCCC----cEEEEecccCEEEeCCEEECHHHHHHHHHh
Confidence 4788888999999 699999999986555666666778877754
No 151
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=55.23 E-value=18 Score=30.24 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=34.4
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+...+|.+| -+.+.||.||.-...+..+.-.+++++|..
T Consensus 494 ~~TGDlg~~d~dG----~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~ 536 (647)
T PTZ00237 494 YNSGDLGFKDENG----YYTIVSRSDDQIKISGNKVQLNTIETSILK 536 (647)
T ss_pred EECCcEEEECCCC----eEEEEeccCCEEEECCEEeCHHHHHHHHHh
Confidence 4788888999999 699999999986666666677788877654
No 152
>PHA02125 thioredoxin-like protein
Probab=55.07 E-value=12 Score=22.55 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=22.3
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.|+.+++++.|+...+|++. +|+ ..-++.|.
T Consensus 32 ~~~~~~l~~~~~v~~~PT~~----~g~--~~~~~~G~ 62 (75)
T PHA02125 32 TDEGVELTAKHHIRSLPTLV----NTS--TLDRFTGV 62 (75)
T ss_pred CCCCHHHHHHcCCceeCeEE----CCE--EEEEEeCC
Confidence 45778999999999999975 342 12356674
No 153
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=54.91 E-value=26 Score=24.35 Aligned_cols=27 Identities=7% Similarity=0.221 Sum_probs=22.8
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCC
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSR 56 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~ 56 (97)
..+|.++++|++|+ ++.+..|...+..
T Consensus 78 ~~vPtivFld~~g~--vi~~i~Gy~~~~~ 104 (130)
T cd02960 78 QYVPRIMFVDPSLT--VRADITGRYSNRL 104 (130)
T ss_pred cccCeEEEECCCCC--CcccccccccCcc
Confidence 67999999999997 5788888887763
No 154
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=54.83 E-value=14 Score=30.79 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=33.8
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+...+|.+| .+.+.||.||.-...+..+.-.+++.+|.+
T Consensus 501 ~~tGDlg~~d~dG----~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~ 543 (652)
T TIGR01217 501 WRHGDWITLTPRG----GIVIHGRSDSTLNPQGVRMGSAEIYNAVER 543 (652)
T ss_pred EEcCCcEEECCCC----cEEEEecccCeEecCCEEcCHHHHHHHHHh
Confidence 3567788899998 699999999986666666777788877754
No 155
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=54.57 E-value=21 Score=21.96 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=19.5
Q ss_pred ChhhHHHHhCCc--cCceEEEEecC
Q 034345 17 QSQDVARDFGAA--CTPEFFLFKKD 39 (97)
Q Consensus 17 ~~q~va~a~gA~--~TPe~fvld~~ 39 (97)
+...+++.||.. ..|++.+++..
T Consensus 54 ~~~~~~~~~~i~~~~~P~~~~~~~~ 78 (103)
T cd02982 54 DFGRHLEYFGLKEEDLPVIAIINLS 78 (103)
T ss_pred hhHHHHHHcCCChhhCCEEEEEecc
Confidence 335699999999 99999999884
No 156
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=54.53 E-value=7.9 Score=27.41 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=14.7
Q ss_pred CccCceEEEEecCCCCCeeEEEe
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYH 49 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~ 49 (97)
..++.-+||+|++|+ ++-.|.
T Consensus 152 i~Hs~~~~Lidp~G~--i~~~y~ 172 (174)
T PF02630_consen 152 IDHSAFIYLIDPDGR--IRAIYN 172 (174)
T ss_dssp EEESSEEEEE-TTSE--EEEEEC
T ss_pred EecccEEEEEcCCCc--EEEEEc
Confidence 457888999999995 455554
No 157
>PRK13390 acyl-CoA synthetase; Provisional
Probab=54.51 E-value=27 Score=27.41 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=32.2
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-+|.+| .+.+.||.||.....+..+.-..++++|..
T Consensus 382 ~tGDl~~~~~dg----~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~ 423 (501)
T PRK13390 382 TVGDLGSVDEDG----YLYLADRKSFMIISGGVNIYPQETENALTM 423 (501)
T ss_pred EcCceEEECCCC----eEEEeeccccceeECCeeeCHHHHHHHHHh
Confidence 677778888888 799999999986656666666677776644
No 158
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=54.33 E-value=14 Score=29.37 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=34.1
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|-+..-+|.+| .+.+.||.||.-...+..+.-..++.+|.+.
T Consensus 326 ~~TGDl~~~d~dG----~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~ 369 (452)
T PRK07445 326 FETDDLGYLDAQG----YLHILGRNSQKIITGGENVYPAEVEAAILAT 369 (452)
T ss_pred EECCCEEEEcCCC----CEEEEeecCCEEEECCEEECHHHHHHHHHhC
Confidence 4677788889998 6999999999865566666677788777553
No 159
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=54.25 E-value=15 Score=30.32 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=33.4
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+...+|.+| .+.+.||.||.-...+..+.-.+++.+|.+
T Consensus 474 ~~TGD~g~~d~dG----~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~ 516 (628)
T TIGR02316 474 YSSFDWGIRDEDG----YTFILGRTDDVINVAGHRLGTREIEESVSS 516 (628)
T ss_pred EECCceEEEcCCC----cEEEEEcCcceEEeCCEEeCHHHHHHHHHh
Confidence 4677788889998 699999999986666666666777777654
No 160
>PLN03102 acyl-activating enzyme; Provisional
Probab=54.08 E-value=14 Score=30.08 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=33.1
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.|.||.||.....+..+.-..++.+|..
T Consensus 422 ~~TGDlg~~d~dG----~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~ 464 (579)
T PLN03102 422 LNTGDVGVIHPDG----HVEIKDRSKDIIISGGENISSVEVENVLYK 464 (579)
T ss_pred eecCceEEEcCCC----eEEEEeccCcEEEECCEEECHHHHHHHHHh
Confidence 4677788899998 799999999986555556666677777755
No 161
>PRK08315 AMP-binding domain protein; Validated
Probab=54.01 E-value=14 Score=29.35 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=32.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|=+..-+|.+| .+.++||+||.....+..+.-.+++.+|.+.
T Consensus 429 ~~TGD~~~~~~dg----~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~ 472 (559)
T PRK08315 429 MHTGDLAVMDEEG----YVNIVGRIKDMIIRGGENIYPREIEEFLYTH 472 (559)
T ss_pred EEccceEEEcCCc----eEEEEeeccceEEECCEEEcHHHHHHHHHhC
Confidence 3567777888888 7999999999865555555556777766543
No 162
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=53.36 E-value=59 Score=24.95 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=33.4
Q ss_pred hHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345 20 DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (97)
Q Consensus 20 ~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~ 79 (97)
..++.+|.+.||..||++++... +...=.|.|. ...|.+=|..++.+-
T Consensus 197 gqa~~l~v~~~PAl~Lv~~~t~~-~~pv~~G~iS-----------~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 197 GQAQRLGVKYFPALMLVDPKSGS-VRPLSYGFIT-----------QDDLAKRFLNVSTDF 244 (248)
T ss_pred hHHHhcCCcccceEEEEECCCCc-EEEEeeccCC-----------HHHHHHHHHHHHhcc
Confidence 35689999999999999999753 3444445543 336776676666654
No 163
>PRK06145 acyl-CoA synthetase; Validated
Probab=53.34 E-value=24 Score=27.58 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=34.7
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
.-.|=+..-+|.+| .+.+.||.||.-...+..+.-.+++.+|..+
T Consensus 374 ~~~TGDl~~~~~~g----~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~ 418 (497)
T PRK06145 374 WFRSGDVGYLDEEG----FLYLTDRKKDMIISGGENIASSEVERVIYEL 418 (497)
T ss_pred CeeccceEEEcCCC----cEEEeccccceEEeCCeEECHHHHHHHHHhC
Confidence 45777888889998 7999999999865566666667777777553
No 164
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=52.55 E-value=20 Score=28.08 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=32.2
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
.|-+..-+|.+| .+.+.||.||.....+..+.-.+++.+|..
T Consensus 397 ~TGD~~~~~~~g----~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~ 438 (515)
T TIGR03098 397 WSGDTVRRDEEG----FLYFVGRRDEMIKTSGYRVSPTEVEEVAYA 438 (515)
T ss_pred eccceEEEcCCc----eEEEEeccccceecCCEEeCHHHHHHHHhc
Confidence 577778888888 699999999986666666666777776643
No 165
>PRK07788 acyl-CoA synthetase; Validated
Probab=52.51 E-value=14 Score=29.54 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=33.1
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|-+..-+|.+| .+.+.||.||.-..++..+.-..++.+|.+
T Consensus 428 ~~~TGDl~~~~~~g----~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~ 471 (549)
T PRK07788 428 LLSSGDVGYFDEDG----LLFVDGRDDDMIVSGGENVFPAEVEDLLAG 471 (549)
T ss_pred ceecCceEEEcCCC----CEEEeccCcceEEECCEEECHHHHHHHHHh
Confidence 34677888888998 699999999986555666656677776654
No 166
>PRK06839 acyl-CoA synthetase; Validated
Probab=52.23 E-value=14 Score=28.78 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=33.4
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|=+.+-+|.+| .+.+.||.||.....+..+.-..++.+|..
T Consensus 372 ~~~TGDl~~~~~~g----~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~ 415 (496)
T PRK06839 372 WLCTGDLARVDEDG----FVYIVGRKKEMIISGGENIYPLEVEQVINK 415 (496)
T ss_pred CeeecceEEEcCCC----cEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 35788889999888 689999999986555666666677777644
No 167
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=52.02 E-value=15 Score=30.04 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=33.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+...+|.+| .+.+.||.||.-...+..+.-.+++.+|.+
T Consensus 475 ~~TGDl~~~d~dG----~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~ 517 (629)
T PRK10524 475 YSTFDWGIRDADG----YYFILGRTDDVINVAGHRLGTREIEESISS 517 (629)
T ss_pred EEcCCcEEEcCCC----cEEEEEEecCeEEeCCEEeCHHHHHHHHHh
Confidence 4677778889998 699999999986555666666777777754
No 168
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.64 E-value=15 Score=25.40 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=20.8
Q ss_pred eChhhHHHHhCCccCceEEEEecCC
Q 034345 16 FQSQDVARDFGAACTPEFFLFKKDG 40 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fvld~~g 40 (97)
..+++.|.++|+..||+++|-|.+.
T Consensus 156 ~~~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 156 QEDQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHHHcCCCccCEEEEEeCCe
Confidence 3456778999999999999998774
No 169
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=51.25 E-value=44 Score=24.01 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.6
Q ss_pred hhhHHHHhCCccCceEEE
Q 034345 18 SQDVARDFGAACTPEFFL 35 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fv 35 (97)
..+.++.+|...||.++|
T Consensus 156 ~~~~a~~~gI~gtPtfiI 173 (207)
T PRK10954 156 QEKAAADLQLRGVPAMFV 173 (207)
T ss_pred HHHHHHHcCCCCCCEEEE
Confidence 356789999999999998
No 170
>PRK05850 acyl-CoA synthetase; Validated
Probab=50.54 E-value=25 Score=28.27 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=34.6
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
--+|-+..-+| +| .+.+.||+||.-...+..+.-.+++.+|.++
T Consensus 438 w~~TGDl~~~~-~G----~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~ 481 (578)
T PRK05850 438 WLRTGDLGFIS-EG----ELFIVGRIKDLLIVDGRNHYPDDIEATIQEI 481 (578)
T ss_pred eeeccceeeEE-CC----EEEEEcccccEEEECCeecCHHHHHHHHHHh
Confidence 34777777777 77 7999999999866667777778888888765
No 171
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=49.98 E-value=19 Score=31.73 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=35.0
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
--+|=+..-+|.+| .+.+.||.||.-..++..+.-.+++.++.++
T Consensus 1011 ~~~TGDl~~~d~dG----~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~ 1055 (1140)
T PRK06814 1011 WYDTGDIVTIDEEG----FITIKGRAKRFAKIAGEMISLAAVEELAAEL 1055 (1140)
T ss_pred eEecCCEEEECCCC----eEEEEecccCeeeeCCEEECHHHHHHHHHhc
Confidence 34677788899998 7999999999866666666677888777654
No 172
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=49.96 E-value=16 Score=24.88 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=20.1
Q ss_pred eChhhHHHHhCCc-cCceEEEEecCC
Q 034345 16 FQSQDVARDFGAA-CTPEFFLFKKDG 40 (97)
Q Consensus 16 D~~q~va~a~gA~-~TPe~fvld~~g 40 (97)
|....+++.|+.. ..|++++++..+
T Consensus 76 d~~~~~~~~~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 76 DPNNPFRTDPKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CcchhhHhccCcccCCCEEEEEcCCc
Confidence 3456999999998 999999995443
No 173
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=49.76 E-value=20 Score=27.87 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=32.5
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-++.+| .+.+.||+||.....+..+.-.+++.+|..
T Consensus 362 ~~tGDl~~~~~~g----~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~ 404 (483)
T PRK03640 362 FKTGDIGYLDEEG----FLYVLDRRSDLIISGGENIYPAEIEEVLLS 404 (483)
T ss_pred eeccceEEEcCCC----CEEEeecccCeEEeCCEEECHHHHHHHHHh
Confidence 4677777888888 699999999986556666666677777754
No 174
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=49.51 E-value=18 Score=29.80 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=33.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||.||.-...+..+.-.+++.+|.+
T Consensus 485 ~~TGDl~~~d~dG----~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 527 (637)
T PRK00174 485 YFTGDGARRDEDG----YYWITGRVDDVLNVSGHRLGTAEIESALVA 527 (637)
T ss_pred EECCceEEEcCCC----cEEEEEecccEEEeCCEEECHHHHHHHHHh
Confidence 4677788889998 699999999996555666666677777654
No 175
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=49.43 E-value=18 Score=29.21 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=32.6
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||+||.-..++..+.-..++.++..
T Consensus 416 ~~TGDl~~~d~dG----~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 458 (563)
T PLN02860 416 LDTGDIGWIDKAG----NLWLIGRSNDRIKTGGENVYPEEVEAVLSQ 458 (563)
T ss_pred EEccceEEEcCCC----CEEEeecccceeEECCEEccHHHHHHHHHh
Confidence 4688888889998 699999999986556666656667766644
No 176
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=49.09 E-value=28 Score=27.29 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=34.4
Q ss_pred CCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 26 GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 26 gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
|--+|=+..-+|++| .+.+.||.||....++..+.-.+++.+|..
T Consensus 369 ~~~~TGD~~~~~~~g----~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~ 413 (502)
T PRK08276 369 GWVTVGDVGYLDEDG----YLYLTDRKSDMIISGGVNIYPQEIENLLVT 413 (502)
T ss_pred CceeecceEEEcCCc----CEEEeccCcceEEeCCEEeCHHHHHHHHHh
Confidence 445778888899988 699999999886556666666777777753
No 177
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=49.04 E-value=22 Score=29.43 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=32.0
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-+|.+| .+.+.||.||.-...+..+.-.+++.+|.+
T Consensus 501 ~TGDl~~~d~dG----~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~ 542 (655)
T PRK03584 501 RHGDWIEITEHG----GVVIYGRSDATLNRGGVRIGTAEIYRQVEA 542 (655)
T ss_pred ecCCeEEECCCC----eEEEEeeccCeeecCcEEECHHHHHHHHHh
Confidence 567788889998 799999999996555655666677776643
No 178
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=48.05 E-value=47 Score=26.17 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=41.6
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
...+|+.+||..-|.+-+.+.+|.+ +++..+=+.+|... .+...+..+|.+-+|+...
T Consensus 226 ~~~LA~~~~a~vip~~~~r~~~g~~-y~l~i~p~~~~~~~-~D~~~~a~~mn~~~E~~I~ 283 (308)
T COG1560 226 PAKLARLTGAAVVPVFPVRNPDGSG-YTLHIHPPMTDDPS-EDVEADAQRMNDFVEKWIR 283 (308)
T ss_pred HHHHHHHhCCCEEEEEEEEeCCCCe-EEEEEeccccCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999888865 68888776666643 3334445566666666543
No 179
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=47.76 E-value=14 Score=21.67 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.7
Q ss_pred ChhhHHHHhCCccCceEEEEe
Q 034345 17 QSQDVARDFGAACTPEFFLFK 37 (97)
Q Consensus 17 ~~q~va~a~gA~~TPe~fvld 37 (97)
...+.++.+|...||.+++-|
T Consensus 71 ~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 71 ADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHcCCCCCCEEEECC
Confidence 567889999999999999977
No 180
>PRK12583 acyl-CoA synthetase; Provisional
Probab=47.74 E-value=21 Score=28.33 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=32.8
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||.||.....+..+.-.+++.+|..
T Consensus 430 ~~TGDl~~~~~dg----~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~ 472 (558)
T PRK12583 430 MHTGDLATMDEQG----YVRIVGRSKDMIIRGGENIYPREIEEFLFT 472 (558)
T ss_pred eeccceEEECCCc----cEEEEecccceeEECCEEeCHHHHHHHHHh
Confidence 4688888888888 799999999986555666666677776643
No 181
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=47.74 E-value=16 Score=32.94 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=33.1
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-++.+| .+.|.||.||.-...+..+.-.+++.+|.+
T Consensus 681 ~TGDlg~~~~dG----~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~ 722 (1389)
T TIGR03443 681 RTGDLGRYLPDG----NVECCGRADDQVKIRGFRIELGEIDTHLSQ 722 (1389)
T ss_pred ecCCceeEcCCC----CEEEecccCCEEEeCcEEecHHHHHHHHHh
Confidence 677777789998 699999999997666666666677777654
No 182
>PRK07514 malonyl-CoA synthase; Validated
Probab=47.58 E-value=22 Score=27.82 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=32.9
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|=+...++.+| .+.+.||.||.-...+..+.-..++.+|..+
T Consensus 379 ~~TGDl~~~~~~g----~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~ 422 (504)
T PRK07514 379 FITGDLGKIDERG----YVHIVGRGKDLIISGGYNVYPKEVEGEIDEL 422 (504)
T ss_pred eeecceEEEcCCc----cEEEeccccceEEeCCeEECHHHHHHHHHhC
Confidence 3677777888888 6999999999865556666666788777543
No 183
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=47.55 E-value=25 Score=30.74 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=36.5
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL 76 (97)
-+|=+..-+|.+| .+.+.||.||.-...+..+.-.+++++|.+..
T Consensus 1021 ~~TGD~~~~~~~g----~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~ 1065 (1146)
T PRK08633 1021 YVTGDKGHLDEDG----FLTITDRYSRFAKIGGEMVPLGAVEEELAKAL 1065 (1146)
T ss_pred EECCCEEEEcCCc----eEEEEecccchhhhCcEEECHHHHHHHHHhcc
Confidence 4788888899998 79999999998666666667778888887764
No 184
>PRK09274 peptide synthase; Provisional
Probab=47.52 E-value=18 Score=28.93 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=29.7
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-+|.+| .+.+.||.||.-...+..+.-.+++.+|..
T Consensus 423 ~TGDlg~~d~dG----~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 464 (552)
T PRK09274 423 RMGDLGYLDAQG----RLWFCGRKAHRVETAGGTLYTIPCERIFNT 464 (552)
T ss_pred EcCCEEEEccCC----cEEEEeccCCeEEECCEEECcHHHHHHHHh
Confidence 455666778888 699999999986555555555567666654
No 185
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=47.41 E-value=20 Score=26.92 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=32.7
Q ss_pred hHHhhhhcceeEEEeChhhHHHHhCCccCceEEEEecCCC
Q 034345 2 LLELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGR 41 (97)
Q Consensus 2 ~~~~~~~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~ 41 (97)
..|+...+.-|+-+|..+.+++.||-+.+|.+.---.+|+
T Consensus 156 ~~~~~~~l~~~vYfdQ~G~Lt~rF~I~~VPAvV~~~q~G~ 195 (209)
T PRK13738 156 IPEMSKALDSRIYFDQNGVLCQRFGIDQVPARVSAVPGGR 195 (209)
T ss_pred HHHHHHHhCCceEEcCcchHHHhcCCeeeceEEEEcCCCC
Confidence 3577788899999999999999999999998764225664
No 186
>PLN02574 4-coumarate--CoA ligase-like
Probab=47.17 E-value=29 Score=28.01 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=33.2
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|=+...+|.+| .+.+.||.||.-...+..+.-.+++.+|..
T Consensus 431 ~~~TGDlg~~~~~G----~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 474 (560)
T PLN02574 431 WLRTGDIAYFDEDG----YLYIVDRLKEIIKYKGFQIAPADLEAVLIS 474 (560)
T ss_pred CcccceEEEEECCC----eEEEEecchhheEECCEEECHHHHHHHHHh
Confidence 34777788888888 799999999997656666666677766644
No 187
>PRK07638 acyl-CoA synthetase; Validated
Probab=46.22 E-value=24 Score=27.63 Aligned_cols=42 Identities=7% Similarity=0.045 Sum_probs=31.9
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-+|.+| .+.+.||.||.-...+..+.-.+++.+|.+
T Consensus 364 ~TGDl~~~d~~g----~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 405 (487)
T PRK07638 364 TVRDVGYEDEEG----FIYIVGREKNMILFGGINIFPEEIESVLHE 405 (487)
T ss_pred ecCccEeEcCCC----eEEEEecCCCeEEeCCEEECHHHHHHHHHh
Confidence 577777888888 799999999986555566666677777654
No 188
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=45.93 E-value=27 Score=27.23 Aligned_cols=44 Identities=11% Similarity=0.020 Sum_probs=31.9
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|=+..-++.+| .+.+.||.||.....+..+.-.+++++|..+
T Consensus 394 ~~tGDl~~~~~~g----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 437 (513)
T PRK07656 394 LHTGDLGRLDEEG----YLYIVDRKKDMFIVGGFNVYPAEVEEVLYEH 437 (513)
T ss_pred eeccceEEEcCCe----eEEEEecccceEEeCCEEeCHHHHHHHHHhC
Confidence 3566677777888 7999999999865556666666777777553
No 189
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=45.91 E-value=31 Score=29.09 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=34.7
Q ss_pred hHHHHh---CCccCceEEEEecCCCCCeeEEEeeecCCCCC-CCCCCCcHHHHHHHH
Q 034345 20 DVARDF---GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAI 72 (97)
Q Consensus 20 ~va~a~---gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~-~~~~~~t~~~L~~Ai 72 (97)
..+++| |--+|=+.--+|.+| .+.+.||.||... ..+..+.-..++.++
T Consensus 527 ~T~~~f~~dGw~~TGDig~~d~dG----~l~i~GR~kd~ik~~~G~~I~p~eIE~~l 579 (700)
T PTZ00216 527 LTREVLDEDGWFHTGDVGSIAANG----TLRIIGRVKALAKNCLGEYIALEALEALY 579 (700)
T ss_pred HhhhhccccCCeeccceEEEcCCC----cEEEEEehHhheecCCCceeccHHHHHHH
Confidence 445555 355788888899999 7999999999864 455555445566554
No 190
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=45.75 E-value=58 Score=21.92 Aligned_cols=39 Identities=23% Similarity=0.537 Sum_probs=28.7
Q ss_pred hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.+.|-+.. +.++++.+|+.. |.+.|+.+.+.. ...|.|.
T Consensus 22 ~~~F~~~~--~~~~~~~~~~~~-p~i~~~k~~~~~--~~~y~~~ 60 (184)
T PF13848_consen 22 DYQFGVTF--NEELAKKYGIKE-PTIVVYKKFDEK--PVVYDGD 60 (184)
T ss_dssp TSEEEEEE---HHHHHHCTCSS-SEEEEEECTTTS--EEEESSS
T ss_pred CcEEEEEc--HHHHHHHhCCCC-CcEEEeccCCCC--ceecccc
Confidence 34455444 567999999998 999999884432 7999997
No 191
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=45.53 E-value=29 Score=30.14 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=37.7
Q ss_pred hhHHHHh---CCccCceEEEEecCCCCCeeEEEeeecCCCCC-CCCCCCcHHHHHHHH
Q 034345 19 QDVARDF---GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAI 72 (97)
Q Consensus 19 q~va~a~---gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~-~~~~~~t~~~L~~Ai 72 (97)
...+++| |=-+|=+..-+|.+| .+.+.||.+|... ..++.+.-..+++++
T Consensus 560 e~T~~~f~~dGW~~TGDig~~d~dG----~l~i~gR~kdlIkls~Ge~I~p~eIE~~l 613 (746)
T PTZ00342 560 EQTKNAFTEDGYFKTGDIVQINKNG----SLTFLDRSKGLVKLSQGEYIETDMLNNLY 613 (746)
T ss_pred hhhhhhcCcCCcccCCcEEEECCCC----eEEEEccCCCeEEeCCCEEEchHHHHHHH
Confidence 3566666 356899999999999 7999999999865 446655566666655
No 192
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=45.40 E-value=23 Score=28.54 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=33.3
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|=+..-++.+| .+.+.||+||....++..+.-.+++.+|.++
T Consensus 402 ~~TGD~~~~~~dG----~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 445 (542)
T PRK06155 402 FHTGDRVVRDADG----WFRFVDRIKDAIRRRGENISSFEVEQVLLSH 445 (542)
T ss_pred EeccceEEEcCCc----eEEEEecCCCEEEeCCEEECHHHHHHHHHhC
Confidence 3577777888888 7999999999865566666667777777553
No 193
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=45.24 E-value=48 Score=19.51 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=12.4
Q ss_pred CccCceEEEEecCCC
Q 034345 27 AACTPEFFLFKKDGR 41 (97)
Q Consensus 27 A~~TPe~fvld~~g~ 41 (97)
+...|++|-+|.+|.
T Consensus 15 ~~~aP~vF~~d~~g~ 29 (65)
T PF13459_consen 15 VELAPEVFELDDDGK 29 (65)
T ss_pred HhhCCccEEECCCCC
Confidence 445699999999985
No 194
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=45.08 E-value=29 Score=17.62 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=14.6
Q ss_pred HHhCCccCceEEEEecC
Q 034345 23 RDFGAACTPEFFLFKKD 39 (97)
Q Consensus 23 ~a~gA~~TPe~fvld~~ 39 (97)
..++...+|.+++++.+
T Consensus 47 ~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 47 KRYGVGGVPTLVVFGPG 63 (69)
T ss_pred HhCCCccccEEEEEeCC
Confidence 37889999999999876
No 195
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=45.07 E-value=21 Score=24.22 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=24.1
Q ss_pred hhhHHHHhCCc--cCceEEEEecCCCCCeeEEEee
Q 034345 18 SQDVARDFGAA--CTPEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 18 ~q~va~a~gA~--~TPe~fvld~~g~~~~~l~Y~G 50 (97)
..++++.||.. ..|+..+|.+.+... -+.|.|
T Consensus 67 ~~~L~~~y~I~~~gyPTl~lF~~g~~~~-~~~Y~G 100 (116)
T cd03007 67 NMELGERYKLDKESYPVIYLFHGGDFEN-PVPYSG 100 (116)
T ss_pred hHHHHHHhCCCcCCCCEEEEEeCCCcCC-CccCCC
Confidence 36799999999 999999998653110 367777
No 196
>PRK08162 acyl-CoA synthetase; Validated
Probab=44.78 E-value=23 Score=28.17 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=32.5
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+...+|.+| .+.|.||.||....++..+.-.+++.+|..
T Consensus 419 ~TGDl~~~d~dg----~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~ 460 (545)
T PRK08162 419 HTGDLAVLHPDG----YIKIKDRSKDIIISGGENISSIEVEDVLYR 460 (545)
T ss_pred ccCceEEEcCCc----cEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 577778888888 799999999986656666666777777654
No 197
>PRK07470 acyl-CoA synthetase; Validated
Probab=44.57 E-value=23 Score=28.10 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=32.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.++||.||.....+..+.-..++.+|.+
T Consensus 396 ~~TGDl~~~~~~g----~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~ 438 (528)
T PRK07470 396 FRTGDLGHLDARG----FLYITGRASDMYISGGSNVYPREIEEKLLT 438 (528)
T ss_pred EecceeEEEccCC----eEEEeCCccceEEeCCEEECHHHHHHHHHh
Confidence 4677778888888 699999999975545555556677777654
No 198
>PLN03052 acetate--CoA ligase; Provisional
Probab=44.38 E-value=26 Score=30.05 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=33.1
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~ 73 (97)
+|=+...+|.+| -+.++||.||.-...+..+.-.+++.+|.
T Consensus 592 ~tGDl~~~d~dG----~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~ 632 (728)
T PLN03052 592 RHGDIFERTSGG----YYRAHGRADDTMNLGGIKVSSVEIERVCN 632 (728)
T ss_pred ecCceEEECCCC----eEEEEecCCCEEeeCCEEeCHHHHHHHHH
Confidence 677888899998 69999999999766676777778877663
No 199
>PRK05852 acyl-CoA synthetase; Validated
Probab=43.90 E-value=24 Score=28.12 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=33.3
Q ss_pred CCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 26 GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 26 gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
|--+|-+...+|.+| .+.+.||.||.-...+..+.-..++.+|..
T Consensus 408 g~~~TGD~~~~d~dG----~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~ 452 (534)
T PRK05852 408 GWLRTGDLGSLSAAG----DLSIRGRIKELINRGGEKISPERVEGVLAS 452 (534)
T ss_pred CCcccCceEEEeCCC----cEEEEecchhhEEECCEEECHHHHHHHHHh
Confidence 345788899999999 699999999986545555555666666644
No 200
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=43.85 E-value=27 Score=27.98 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=30.5
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
+|=+...+| +| .+.|.||+||.-...+..+.-.+++.+|.+.
T Consensus 399 ~TGDl~~~~-~G----~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 440 (525)
T PRK05851 399 PTGDLGYLV-DG----GLVVCGRAKELITVAGRNIFPTEIERVAAQV 440 (525)
T ss_pred eccceEEEE-CC----EEEEEeecCCEEEECCEEeCHHHHHHHHHhC
Confidence 455555566 56 6999999999876666677777888777653
No 201
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=43.40 E-value=31 Score=29.10 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=33.5
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|=+..-+|.+| .+.+.||+||.-...+..+.-.+++.++..
T Consensus 592 w~~TGDlg~~d~dG----~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~ 635 (718)
T PRK08043 592 WYDTGDIVRFDEQG----FVQIQGRAKRFAKIAGEMVSLEMVEQLALG 635 (718)
T ss_pred eEecCCEEEEcCCC----cEEEEecCCCeeEeCcEEcCHHHHHHHHHh
Confidence 34678888899999 699999999986666666666677766543
No 202
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=43.20 E-value=27 Score=28.18 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=33.3
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|-+..-+|.+| .+.+.||+||.....+..+.-..++.+|..+
T Consensus 435 ~~TGDlg~~~~~G----~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~ 478 (562)
T PRK05677 435 LKTGDIALIQEDG----YMRIVDRKKDMILVSGFNVYPNELEDVLAAL 478 (562)
T ss_pred ccccceEEECCCC----cEEEEecCcCeEEeCCEEECHHHHHHHHHhC
Confidence 4677788888898 7999999999865556666666777777553
No 203
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=43.16 E-value=26 Score=28.04 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=31.6
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|-+..-++.+| .+.+.||.||....++..+.-..++.+|..
T Consensus 421 ~~TGD~~~~~~~g----~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~ 463 (547)
T PRK13295 421 FDTGDLARIDADG----YIRISGRSKDVIIRGGENIPVVEIEALLYR 463 (547)
T ss_pred eecceEEEEcCCc----eEEEEeccCCeEEECCEEECHHHHHHHHHh
Confidence 4677777888888 799999999986555556556667766654
No 204
>PRK07867 acyl-CoA synthetase; Validated
Probab=43.05 E-value=24 Score=28.41 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=32.4
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|=+..-++.+| .+.+.||.||....++..+.-.+++.+|.+
T Consensus 382 ~~~TGD~~~~~~~g----~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 425 (529)
T PRK07867 382 VYWSGDLAYRDADG----YAYFAGRLGDWMRVDGENLGTAPIERILLR 425 (529)
T ss_pred eEeeccEEEEeCCC----cEEEeccccCeEEECCEEeCHHHHHHHHHh
Confidence 34677788888888 699999999985555555556677777654
No 205
>PRK09088 acyl-CoA synthetase; Validated
Probab=43.02 E-value=23 Score=27.63 Aligned_cols=43 Identities=16% Similarity=-0.013 Sum_probs=31.7
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||.||.-...+..+.-..++.+|..
T Consensus 363 ~~TGDl~~~~~~g----~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~ 405 (488)
T PRK09088 363 FRTGDIARRDADG----FFWVVDRKKDMFISGGENVYPAEIEAVLAD 405 (488)
T ss_pred eeecceEEEcCCC----cEEEeccccceEEeCCEEECHHHHHHHHHh
Confidence 4677788888888 699999999986555555555677776644
No 206
>PLN02654 acetate-CoA ligase
Probab=42.91 E-value=32 Score=28.87 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=35.9
Q ss_pred CCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 26 GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 26 gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
|--+|=+..-+|.+| -+.+.||.||.-...+..+.-.+++.+|.+
T Consensus 513 g~~~TGD~~~~d~dG----~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~ 557 (666)
T PLN02654 513 GYYFSGDGCSRDKDG----YYWLTGRVDDVINVSGHRIGTAEVESALVS 557 (666)
T ss_pred CEEEeCceEEECCCC----cEEEeeeccCeEEeCCEEECHHHHHHHHHh
Confidence 445788888899999 699999999997666777777788877754
No 207
>PRK07868 acyl-CoA synthetase; Validated
Probab=42.86 E-value=23 Score=31.50 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=32.3
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+.+.+|.+| .+.|.||.||.-...+..+.-.+++.+|.+
T Consensus 838 ~~TGDlg~~d~dG----~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~ 880 (994)
T PRK07868 838 ISTEYLFRRDDDG----DYWLVDRRGSVIRTARGPVYTEPVTDALGR 880 (994)
T ss_pred EeccceEEEcCCC----CEEEeccCCCEEEeCCceEcHHHHHHHHhc
Confidence 4788889999999 699999999996554545555566665543
No 208
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.36 E-value=38 Score=28.80 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=40.1
Q ss_pred hhHHHHhCCc---cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHH
Q 034345 19 QDVARDFGAA---CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAI 72 (97)
Q Consensus 19 q~va~a~gA~---~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai 72 (97)
+.=|++|.+. ||-+.+=+|++| -|+-.||+-|+--+.++++.-.++++.|
T Consensus 404 ~HNa~aF~a~GFYrsGD~V~~~~dG----yl~V~GR~KDQINRgGEKIAAeEvEn~L 456 (542)
T COG1021 404 EHNARAFDADGFYRSGDLVRRDPDG----YLVVEGRVKDQINRGGEKIAAEEVENLL 456 (542)
T ss_pred hhhhhccCcCCceecCceeEecCCc----eEEEEeeehhhhccccchhhHHHHHHHH
Confidence 3456888766 899999999999 5999999999976777887777777643
No 209
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=42.28 E-value=31 Score=26.83 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=31.6
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|=+..-+| +| .+.+.||.||.-...+..+.-..++.+|..
T Consensus 333 ~~~TGD~~~~~-~g----~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~ 375 (458)
T PRK09029 333 WFATRDRGEWQ-NG----ELTILGRLDNLFFSGGEGIQPEEIERVINQ 375 (458)
T ss_pred ccCCCCcEEEe-CC----EEEEecccccceeeCCEEeCHHHHHHHHhc
Confidence 34677777788 77 799999999986555666666677777654
No 210
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=42.00 E-value=36 Score=28.00 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=31.2
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+...++ +| .+.+.||.||.-..++..+.-.+++.+|..
T Consensus 466 ~~TGDlg~~~-dG----~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 507 (631)
T PRK07769 466 VRTGDYGVYF-DG----ELYITGRVKDLVIIDGRNHYPQDLEYTAQE 507 (631)
T ss_pred eeccccccEE-CC----EEEEEcccccEEEECCeeeCHHHHHHHHHh
Confidence 3566666665 67 799999999997666777777788877754
No 211
>PLN02246 4-coumarate--CoA ligase
Probab=41.91 E-value=24 Score=28.17 Aligned_cols=43 Identities=9% Similarity=0.113 Sum_probs=32.1
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
+|=+..-+|.+| .+.+.||.||.....+..+.-.+++.+|.++
T Consensus 415 ~TGD~~~~~~~g----~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~ 457 (537)
T PLN02246 415 HTGDIGYIDDDD----ELFIVDRLKELIKYKGFQVAPAELEALLISH 457 (537)
T ss_pred eecceEEEeCCC----eEEEEecccceEEECCEEECcHHHHHHHHhC
Confidence 566777788888 7999999999865555555666777777553
No 212
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=41.73 E-value=29 Score=27.81 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=30.7
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||+||.....+..+.-..++.++..
T Consensus 411 ~~TGD~~~~~~dg----~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 453 (539)
T PRK07008 411 FPTGDVATIDADG----FMQITDRSKDVIKSGGEWISSIDIENVAVA 453 (539)
T ss_pred cccCceEEEcCCC----cEEEeecccCEEEeCCeEEcHHHHHHHHHh
Confidence 4666777888888 699999999986555555555566665544
No 213
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=41.66 E-value=22 Score=31.70 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=31.2
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-++.+| .+.|.||.|+.....+..+.-.+++.+|..
T Consensus 840 ~TGDl~~~~~~G----~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~ 881 (1296)
T PRK10252 840 RTGDVARWLDDG----AVEYLGRSDDQLKIRGQRIELGEIDRAMQA 881 (1296)
T ss_pred ecCceEEEcCCC----cEEEecccCCeEEEeeEEecHHHHHHHHHh
Confidence 455666678888 799999999996656666666677777754
No 214
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=41.57 E-value=13 Score=25.13 Aligned_cols=20 Identities=15% Similarity=0.471 Sum_probs=16.7
Q ss_pred eChhhHHHHhCCccCceEEE
Q 034345 16 FQSQDVARDFGAACTPEFFL 35 (97)
Q Consensus 16 D~~q~va~a~gA~~TPe~fv 35 (97)
..+.+.++.+|...||.++|
T Consensus 130 ~~~~~~~~~~gi~gTPt~iI 149 (178)
T cd03019 130 AKAEKLAKKYKITGVPAFVV 149 (178)
T ss_pred HHHHHHHHHcCCCCCCeEEE
Confidence 34556788999999999998
No 215
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=41.57 E-value=30 Score=27.59 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=30.7
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-+|.+| .+.+.||+||.-...+..+.-.+++.+|..
T Consensus 417 ~TGDl~~~~~~g----~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~ 458 (545)
T PRK07768 417 DTGDLGYLTEEG----EVVVCGRVKDVIIMAGRNIYPTDIERAAAR 458 (545)
T ss_pred eccceEEEecCC----EEEEEccccceEEECCEecCHHHHHHHHHh
Confidence 455556777778 799999999986555566666778877755
No 216
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=41.52 E-value=84 Score=24.31 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=49.0
Q ss_pred Hhhhhcc--eeEEE-e-ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345 4 ELYLFLM--WLITL-F-QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (97)
Q Consensus 4 ~~~~~~~--fpvL~-D-~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~ 79 (97)
+|-.+.+ |||.. | ....|...++..+ =++||+|+=| +|.|+=.+=.+. ..-.|++.||.+.--.+
T Consensus 81 ~l~~r~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCG----rL~~~i~~P~S~------l~~~~ve~Ai~~ty~~~ 149 (238)
T PF04592_consen 81 ELKRRVSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCG----RLTYHIPLPYSF------LQFPYVEAAIKSTYCED 149 (238)
T ss_pred HHHHhCCCCCceecCCccccCHHHHhCCCc-CcEEEEeccC----cEEEEecCcHHH------hcCHHHHHHHHHHHccc
Confidence 4556777 99886 4 4468999998774 5899999999 799996653331 23459999998877665
Q ss_pred CC
Q 034345 80 PV 81 (97)
Q Consensus 80 ~v 81 (97)
+-
T Consensus 150 ~C 151 (238)
T PF04592_consen 150 PC 151 (238)
T ss_pred cC
Confidence 43
No 217
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=41.45 E-value=30 Score=19.47 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHcCC
Q 034345 64 TGRDIRLAIECVLSGQ 79 (97)
Q Consensus 64 t~~~L~~Ai~alLaG~ 79 (97)
+...|..||+++..|+
T Consensus 1 tee~l~~Ai~~v~~g~ 16 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK 16 (45)
T ss_dssp -HHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhCC
Confidence 3568999999999986
No 218
>PRK06164 acyl-CoA synthetase; Validated
Probab=41.40 E-value=32 Score=27.29 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=31.7
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.|.||+||.-...+..+.-..++.+|..
T Consensus 408 ~~TGDl~~~~~~g----~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~ 450 (540)
T PRK06164 408 FRTGDLGYTRGDG----QFVYQTRMGDSLRLGGFLVNPAEIEHALEA 450 (540)
T ss_pred eecCCeEEEcCCc----eEEEEeecCCeEEECCEEcCHHHHHHHHHh
Confidence 4677777888888 699999999885555666666677776644
No 219
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=41.27 E-value=26 Score=26.16 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=31.5
Q ss_pred HHhhhhcceeEEEeChhhHHHHhCCccCceEEEEecCCC
Q 034345 3 LELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGR 41 (97)
Q Consensus 3 ~~~~~~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~ 41 (97)
.++.+.+.-|+-+|-.+.+.+.||.+.+|.+.- .+|+
T Consensus 159 ~~l~~~l~~~vYfdQ~g~Lt~rF~I~~VPavV~--q~g~ 195 (202)
T TIGR02743 159 NELEKRLDSRIYFDQHGKLTQKFGIKHVPARVS--QEGL 195 (202)
T ss_pred HHHHHHhCCceEEcCCchHhhccCceeeceEEE--ecCC
Confidence 577888889999999999999999999999875 4553
No 220
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=40.75 E-value=22 Score=22.89 Aligned_cols=22 Identities=5% Similarity=0.057 Sum_probs=19.8
Q ss_pred hhcceeEEEeChhhHHHHhCCc
Q 034345 7 LFLMWLITLFQSQDVARDFGAA 28 (97)
Q Consensus 7 ~~~~fpvL~D~~q~va~a~gA~ 28 (97)
..+|||+..|++.++=+++|-.
T Consensus 34 ~~~p~~ly~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 34 TGFPFPLYVDPERKLYKALGLK 55 (115)
T ss_pred cCCCCcEEEeCcHHHHHHhCCc
Confidence 4679999999999999999977
No 221
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.51 E-value=71 Score=24.36 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=36.7
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN 84 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~ 84 (97)
+...|++.|.+..|.+.+ ++ ++.=.|+= +.+.+..||+.+++..+.+.+
T Consensus 173 d~~~A~e~gI~gVP~fv~---d~----~~~V~Gaq-----------~~~v~~~al~~~~~~~~~~~~ 221 (225)
T COG2761 173 DEAAAQEMGIRGVPTFVF---DG----KYAVSGAQ-----------PYDVLEDALRQLLAEKAEEHK 221 (225)
T ss_pred HHHHHHHCCCccCceEEE---cC----cEeecCCC-----------CHHHHHHHHHHHHhcccccCC
Confidence 346789999999998776 44 46667752 355899999999998775544
No 222
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=40.38 E-value=41 Score=27.06 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=33.6
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||.||....++..+.-..++++|..
T Consensus 447 ~~TGD~~~~~~~g----~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~ 489 (573)
T PRK05605 447 FRTGDVVVMEEDG----FIRIVDRIKELIITGGFNVYPAEVEEVLRE 489 (573)
T ss_pred cccCCEEEEcCCC----cEEEEeccccceeeCCEEECHHHHHHHHHh
Confidence 4677778888888 799999999997666666666777777754
No 223
>PRK08308 acyl-CoA synthetase; Validated
Probab=40.21 E-value=31 Score=26.54 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=30.5
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|-+..-+|.+| .+.+.||.||.....+..+.-..++.++..
T Consensus 294 ~TGDl~~~~~dg----~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 335 (414)
T PRK08308 294 FTKDLGYKSERG----TLHFMGRMDDVINVSGLNVYPIEVEDVMLR 335 (414)
T ss_pred ECCceEEECCCc----cEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence 566666677887 699999999987656666666677766644
No 224
>PRK07798 acyl-CoA synthetase; Validated
Probab=40.13 E-value=38 Score=26.45 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=31.5
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-+|.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 411 ~TGD~~~~~~~g----~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~ 452 (533)
T PRK07798 411 IPGDRARVEADG----TITLLGRGSVCINTGGEKVFPEEVEEALKA 452 (533)
T ss_pred EcCcEEEEcCCC----cEEEEccccceEecCCEEeCHHHHHHHHHh
Confidence 567778888888 699999999986656666656677766654
No 225
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=40.08 E-value=24 Score=26.50 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=30.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~ 73 (97)
-+|=+..-+|.+| .+.+.||+||.....+..+.-.+++++|.
T Consensus 357 ~~TGDl~~~d~~g----~~~~~gR~~~~i~~~G~~v~~~~ie~~l~ 398 (408)
T TIGR01733 357 YRTGDLVRYLPDG----NLEFLGRIDDQVKIRGYRIELGEIEAALL 398 (408)
T ss_pred EECCceEEEcCCC----CEEEeeccCCEEEeCeEEechHHHHHHHh
Confidence 3555667778787 69999999998655565555567776664
No 226
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=40.06 E-value=29 Score=27.79 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=32.6
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-++.+| .+.+.||.||.....+..+.-.+++.+|.+
T Consensus 419 ~~TGD~~~~~~dG----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 461 (546)
T PLN02330 419 LHTGDIGYIDDDG----DIFIVDRIKELIKYKGFQVAPAELEAILLT 461 (546)
T ss_pred eecccEEEEeCCC----cEEEEechHHhhhcCCEEECHHHHHHHHHh
Confidence 4677777888888 699999999886555666666777777754
No 227
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=40.06 E-value=34 Score=27.33 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=32.7
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|=+..-+|.+| .+.++||.||.-...+..+.-.+++.+|..+
T Consensus 439 ~~TGD~~~~~~~g----~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~ 482 (560)
T PRK08751 439 LHTGDIARMDEQG----FVYIVDRKKDMILVSGFNVYPNEIEDVIAMM 482 (560)
T ss_pred ccccceEEEcCCc----eEEEEeechhheeECCEEEcHHHHHHHHHhC
Confidence 3566677788888 7999999999865556666666788777554
No 228
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=40.00 E-value=33 Score=26.98 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=31.5
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||+||.-..++..+.-..++.+|..
T Consensus 381 ~~TGD~~~~~~~g----~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~ 423 (509)
T PRK12406 381 ITSGDVGYLDADG----YLFLCDRKRDMVISGGVNIYPAEIEAVLHA 423 (509)
T ss_pred eEEccEEEEcCCc----eEEEeecccceEEECCEEECHHHHHHHHHh
Confidence 3566677788888 799999999886555666666677777654
No 229
>PRK06178 acyl-CoA synthetase; Validated
Probab=39.44 E-value=34 Score=27.51 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=31.5
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-++.+| .+.++||.||.....+..+.-.+++++|..
T Consensus 445 ~TGDl~~~~~~g----~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~ 486 (567)
T PRK06178 445 HTGDIGKIDEQG----FLHYLGRRKEMLKVNGMSVFPSEVEALLGQ 486 (567)
T ss_pred eecceEEEecCC----eEEEEecccccEEECCEEECHHHHHHHHHh
Confidence 566667778888 799999999987656666666777777654
No 230
>PRK07529 AMP-binding domain protein; Validated
Probab=39.31 E-value=32 Score=28.46 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=32.4
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||.||.-..++..+.-.+++.+|.+
T Consensus 447 ~~TGDlg~~d~dG----~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~ 489 (632)
T PRK07529 447 LNTGDLGRIDADG----YFWLTGRAKDLIIRGGHNIDPAAIEEALLR 489 (632)
T ss_pred eEcCcEEEEcCCc----eEEEEecccCEEEeCCEEECHHHHHHHHHh
Confidence 3677777888888 799999999986656655556677776654
No 231
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=39.30 E-value=20 Score=24.45 Aligned_cols=29 Identities=24% Similarity=0.607 Sum_probs=17.8
Q ss_pred EEEeChhhHHHHh---CCccCceEEEEecCCC
Q 034345 13 ITLFQSQDVARDF---GAACTPEFFLFKKDGR 41 (97)
Q Consensus 13 vL~D~~q~va~a~---gA~~TPe~fvld~~g~ 41 (97)
++.|++.++-++| |....|.++++|++|+
T Consensus 78 i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 78 ILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp E-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred EEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 4556666666655 6889999999999985
No 232
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=38.66 E-value=42 Score=26.91 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=33.7
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
--+|=+..-++.+| .+.+.||.||....++..+.-..++++|..+
T Consensus 436 ~~~TGDl~~~~~~g----~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~ 480 (557)
T PRK07059 436 FFRTGDVGVMDERG----YTKIVDRKKDMILVSGFNVYPNEIEEVVASH 480 (557)
T ss_pred ceecCcEEEEcCCC----cEEEecccccceEECCEEEcHHHHHHHHHhC
Confidence 34677777788888 6999999999865566666667888877553
No 233
>PRK06060 acyl-CoA synthetase; Validated
Probab=38.50 E-value=33 Score=28.72 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=31.6
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.|.||.||.....+..+.-.+++.+|..
T Consensus 367 ~~TGDl~~~~~dG----~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~ 409 (705)
T PRK06060 367 LDTRDRVCIDSDG----WVTYRCRADDTEVIGGVNVDPREVERLIIE 409 (705)
T ss_pred EECCeeEEECCCc----eEEEecccCceEEECCEEECHHHHHHHHHh
Confidence 4677777788888 799999999986555555555667766644
No 234
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=38.43 E-value=39 Score=25.73 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=31.1
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||.||.....+..+.-..++.+|.+
T Consensus 322 ~~TGD~~~~~~dg----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 364 (436)
T TIGR01923 322 FNTGDIGELDGEG----FLYVLGRRDDLIISGGENIYPEEIETVLYQ 364 (436)
T ss_pred eeccceEEEcCCC----CEEEeccccCeEEeCCEeeCHHHHHHHHHh
Confidence 3577777888888 699999999986555555555666666644
No 235
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=38.19 E-value=90 Score=19.46 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=18.6
Q ss_pred EEeChhhHHHHhCCccCceEEEEecCCC
Q 034345 14 TLFQSQDVARDFGAACTPEFFLFKKDGR 41 (97)
Q Consensus 14 L~D~~q~va~a~gA~~TPe~fvld~~g~ 41 (97)
.+|.+-=++-..=...-|++|-++.+|.
T Consensus 4 ~vDrd~Cigcg~C~~~aPdvF~~~d~G~ 31 (68)
T COG1141 4 IVDRDTCIGCGACLAVAPDVFDYDDEGI 31 (68)
T ss_pred EechhhccccchhhhcCCcceeeCCCcc
Confidence 3444434444444567899999999994
No 236
>PRK08316 acyl-CoA synthetase; Validated
Probab=38.13 E-value=34 Score=26.72 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=32.7
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+...+|.+| .+.+.||.||.....+..+.-..++.+|.+
T Consensus 397 ~~TGDl~~~~~~g----~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~ 439 (523)
T PRK08316 397 FHSGDLGVMDEEG----YITVVDRKKDMIKTGGENVASREVEEALYT 439 (523)
T ss_pred eeccceEEEcCCc----eEEEecccccEEEeCCeEECHHHHHHHHHh
Confidence 4777778888888 799999999986555666666677776654
No 237
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=37.90 E-value=98 Score=20.05 Aligned_cols=74 Identities=23% Similarity=0.347 Sum_probs=39.8
Q ss_pred hHHhhhhcceeEEEeChhhHHHHhC-----CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345 2 LLELYLFLMWLITLFQSQDVARDFG-----AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76 (97)
Q Consensus 2 ~~~~~~~~~fpvL~D~~q~va~a~g-----A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL 76 (97)
+-++|..+.--+.+=..+.+.|..- -..-|-+.++|.+|+ +.+---|.=.- .-++|..-|.++|
T Consensus 5 ~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~--~vIplL~GH~G---------Gan~lA~~iA~~l 73 (84)
T PF11760_consen 5 LRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGR--FVIPLLGGHRG---------GANELARQIAELL 73 (84)
T ss_dssp HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT----EEEEEE-TTTT----------HHHHHHHHHHHT
T ss_pred HHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCC--EEEEeccCCcc---------hHHHHHHHHHHHh
Confidence 4456666666666677776666553 236799999999996 56665553111 1468999999999
Q ss_pred cCCCCCCCCC
Q 034345 77 SGQPVSSNQK 86 (97)
Q Consensus 77 aG~~v~~~~t 86 (97)
.+++|-+..|
T Consensus 74 ga~~ViTTas 83 (84)
T PF11760_consen 74 GAQPVITTAS 83 (84)
T ss_dssp T-EE------
T ss_pred CCEEEeeCCC
Confidence 9988876543
No 238
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=37.79 E-value=40 Score=26.77 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=32.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||.||.-..++..+.-.+++++|..
T Consensus 410 ~~TGDl~~~~~~g----~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~ 452 (527)
T TIGR02275 410 YYTGDLVRLTPEG----YIVVVGRAKDQINRGGEKIAAEEIENLLLA 452 (527)
T ss_pred EEcCceEEEcCCc----cEEEEecccceeecCCEEECHHHHHHHHHh
Confidence 4677778888888 699999999986555566666677776654
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.52 E-value=27 Score=27.89 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=26.5
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
.|..+.||..||.+.-|++|+|- +|. =.=.|.|..
T Consensus 83 ~D~~p~vAaqfgiqsIPtV~af~-dGq--pVdgF~G~q 117 (304)
T COG3118 83 CDAEPMVAAQFGVQSIPTVYAFK-DGQ--PVDGFQGAQ 117 (304)
T ss_pred CCcchhHHHHhCcCcCCeEEEee-CCc--CccccCCCC
Confidence 58999999999999999999994 443 134445543
No 240
>PRK13382 acyl-CoA synthetase; Provisional
Probab=37.51 E-value=34 Score=27.47 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=33.4
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
.-+|=+..-+|.+| .+.|.||.||.....+..+.-..++.+|...
T Consensus 417 ~~~TGDl~~~~~~g----~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 461 (537)
T PRK13382 417 FMASGDVGYLDENG----RLFVVGRDDEMIVSGGENVYPIEVEKTLATH 461 (537)
T ss_pred CEeeCceEEEeCCC----cEEEeccccceeEECCEEECHHHHHHHHHhC
Confidence 44677778888888 6999999999966556666566777766553
No 241
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=37.13 E-value=1.1e+02 Score=20.88 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=35.3
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
..+|...|+...|-....++.|. +++.+.-.|+... ..........+.++++.++..
T Consensus 123 ~~lA~~~~~pivp~~~~~~~~~~--~~i~~~~~i~~~~-~~~~~~~~~~~~~~lE~~i~~ 179 (192)
T cd07984 123 ARLALKTGAPVVPAFAYRLPGGG--YRIEFEPPLENPP-SEDVEEDTQRLNDALEAAIRE 179 (192)
T ss_pred HHHHHHHCCcEEEEEEEEcCCCC--EEEEEeCCCCCCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 35788889999998888776554 6888877766542 122222233455566665543
No 242
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=36.54 E-value=40 Score=25.32 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=29.4
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
+|=+...+ .+| .+.+.||+||.-...+..+.-..++.+|.++
T Consensus 237 ~TGDl~~~-~~g----~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 278 (358)
T PRK07824 237 RTDDLGAL-DDG----VLTVLGRADDAISTGGLTVLPQVVEAALATH 278 (358)
T ss_pred ecccEEEE-eCC----EEEEEeccCCeEEECCEEECHHHHHHHHHhC
Confidence 55565556 566 7899999999976556666666777766543
No 243
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=36.48 E-value=37 Score=26.91 Aligned_cols=44 Identities=7% Similarity=0.030 Sum_probs=32.5
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|=+..-+|.+| .+.+.||.||.....+..+.-.+++.+|..+
T Consensus 418 ~~TGDl~~~~~~g----~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~ 461 (546)
T PRK08314 418 FRTGDLGRMDEEG----YFFITDRLKRMINASGFKVWPAEVENLLYKH 461 (546)
T ss_pred EecCCEEEEcCCC----cEEEEecchhhEEeCCEEECHHHHHHHHHhC
Confidence 4666677788888 6999999999865556666666777777543
No 244
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=36.12 E-value=44 Score=25.96 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=29.7
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-++.+| .+.+.||+||.....+..+.-..++.++.+
T Consensus 397 ~~tGD~~~~~~~g----~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~ 439 (521)
T PRK06187 397 LHTGDVGYIDEDG----YLYITDRIKDVIISGGENIYPRELEDALYG 439 (521)
T ss_pred eeccceEEEcCCC----CEEEeecccceEEcCCeEECHHHHHHHHHh
Confidence 4677777888888 689999999986545555545556555543
No 245
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=36.07 E-value=39 Score=27.32 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=31.5
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+...+|.+| .+.+.||.||.-...+..+.-..++.+|.+
T Consensus 432 ~~TGD~~~~~~dg----~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~ 474 (576)
T PRK05620 432 LRTGDVGSVTRDG----FLTIHDRARDVIRSGGEWIYSAQLENYIMA 474 (576)
T ss_pred EecCceEEEcCCc----eEEEEechhhhhhcCCEEEcHHHHHHHHhc
Confidence 3677788888888 799999999886555555555566666644
No 246
>PRK06184 hypothetical protein; Provisional
Probab=36.01 E-value=79 Score=25.57 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=38.7
Q ss_pred EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345 13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (97)
Q Consensus 13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~ 80 (97)
.+.|.++.+++.||.. ...++|+-++| -+.+++.-++ ...|...++.+..|++
T Consensus 447 ~~~d~~g~~~~~~~~~-~~~~~lvRPDg----~v~~~~~~~~----------~~~~~~~l~~~~~~~~ 499 (502)
T PRK06184 447 DLVDDAGHFRDAYGLT-GGTLVLVRPDG----YVGLIAAGDD----------AAALEAYLARVGLGRK 499 (502)
T ss_pred ceeCCCccHHHHhcCC-CCcEEEECCCc----ceEEEecCCC----------HHHHHHHHHHhcCCCc
Confidence 4678999999999874 45789999999 5777754322 2357777877777764
No 247
>PRK09192 acyl-CoA synthetase; Validated
Probab=36.00 E-value=45 Score=27.03 Aligned_cols=37 Identities=24% Similarity=0.137 Sum_probs=28.2
Q ss_pred EEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 34 FLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 34 fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
..+ .+| .+.++||.||.-...+..+.-.+++.+|...
T Consensus 447 g~~-~~G----~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 483 (579)
T PRK09192 447 GYL-LDG----YLYITGRAKDLIIINGRNIWPQDIEWIAEQE 483 (579)
T ss_pred eeE-ECC----EEEEEeccccEEEECCCccCHHHHHHHHHhc
Confidence 344 566 7999999999976667777778888887663
No 248
>PRK05857 acyl-CoA synthetase; Validated
Probab=35.83 E-value=43 Score=26.88 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=31.6
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+.+-+|.+| .+.+.||.||.-...+..+.-.+++.+|..
T Consensus 404 ~~TGDlg~~d~~g----~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 446 (540)
T PRK05857 404 VNTGDLLERREDG----FFYIKGRSSEMIICGGVNIAPDEVDRIAEG 446 (540)
T ss_pred eeccceEEEcCCc----eEEEeccccccEecCCEEECHHHHHHHHHh
Confidence 4677778888988 799999999986555555555566665543
No 249
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=34.82 E-value=1.1e+02 Score=23.32 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=34.7
Q ss_pred hHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 20 DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 20 ~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
.+|+.+||..-|-....+.+|.+ +++...-.+++.+..+.. .....+-+++|+.+.
T Consensus 214 ~LA~~~~a~vvp~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~-~~t~~~n~~lE~~Ir 269 (293)
T PRK06946 214 RLARTGGAQVVPFITEVLPDYKG-YRLRVFKPWENYPTGDDD-LDARRMNAFLEEQIR 269 (293)
T ss_pred HHHHhcCCeEEEEEEEEeCCCCe-EEEEEeCCCcCCCCCCHH-HHHHHHHHHHHHHHH
Confidence 58899999999987777777643 577776666654322211 223344556666554
No 250
>PLN02479 acetate-CoA ligase
Probab=34.67 E-value=48 Score=26.79 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=31.3
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|++| .+.+.||.||.....+..+.-.+++.+|..
T Consensus 432 ~~TGDl~~~~~~g----~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 474 (567)
T PLN02479 432 FHSGDLGVKHPDG----YIEIKDRSKDIIISGGENISSLEVENVVYT 474 (567)
T ss_pred eecceeEEEcCCc----cEEEeccccceEEeCCEEEcHHHHHHHHHh
Confidence 3556666788888 699999999986555666666777776653
No 251
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=34.37 E-value=37 Score=27.07 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=32.2
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|-+..-+|.+| .+.+.||.||.-...+..+.-..++.+|.+
T Consensus 419 ~~TGD~~~~~~~g----~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~ 461 (538)
T TIGR03208 419 FDTGDLAFQDAEG----YIRINGRSKDVIIRGGENIPVVEIENLLYQ 461 (538)
T ss_pred eeccceEEECCCC----cEEEEeccCceEEECCEEECHHHHHHHHhc
Confidence 3677778888888 699999999886555666666677777654
No 252
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=34.19 E-value=59 Score=26.20 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=31.5
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|=+...+|.+| .+.+.||.||.....+..+.-..++.+|..
T Consensus 442 ~~~TGD~g~~~~~G----~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~ 485 (562)
T PRK12492 442 WFKTGDIAVIDPDG----FVRIVDRKKDLIIVSGFNVYPNEIEDVVMA 485 (562)
T ss_pred ceecCcEEEECCCC----eEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence 35677778888888 799999999986555555555566665543
No 253
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=33.69 E-value=39 Score=27.13 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=31.4
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|=+..-+|.+| .+.+.||.||....++..+.-..++++|.+.
T Consensus 433 ~~TGD~~~~~~~g----~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~ 476 (563)
T PRK06710 433 LHTGDVGYMDEDG----FFYVKDRKKDMIVASGFNVYPREVEEVLYEH 476 (563)
T ss_pred ccccceEEEcCCC----cEEEeeccccEEEECCEEECHHHHHHHHHhC
Confidence 4566667788888 6999999999755555555556777777553
No 254
>PRK07787 acyl-CoA synthetase; Validated
Probab=33.25 E-value=41 Score=26.32 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=31.3
Q ss_pred ccCceEEEEecCCCCCeeEEEeeec-CCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQF-DDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~I-Dd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|++| .+.+.||. |+.....+..+.-..++.+|.+
T Consensus 352 ~~TGDlg~~~~dg----~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~ 395 (471)
T PRK07787 352 FRTGDVAVVDPDG----MHRIVGRESTDLIKSGGYRIGAGEIETALLG 395 (471)
T ss_pred eecCceEEEcCCC----CEEEeCCCCceeEeeCCEEECHHHHHHHHHh
Confidence 4677777888898 69999997 6665455666666677777754
No 255
>PRK13388 acyl-CoA synthetase; Provisional
Probab=32.99 E-value=41 Score=27.08 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=31.6
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|=+.+-+|.+| .+.+.||.||.-..++..+.-..++.+|..
T Consensus 381 ~~~TGD~~~~~~dg----~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (540)
T PRK13388 381 MYWSGDLAYRDADG----WIYFAGRTADWMRVDGENLSAAPIERILLR 424 (540)
T ss_pred ceeccceEEEcCCC----cEEEeccCCceEEECCEEeCHHHHHHHHHh
Confidence 34677778888888 699999999885545555556666666654
No 256
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=32.98 E-value=48 Score=26.49 Aligned_cols=44 Identities=7% Similarity=-0.003 Sum_probs=32.6
Q ss_pred CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
--+|-+.+-++.+| .+.+.||.||.....+..+.-..++.+|.+
T Consensus 400 ~~~TGDl~~~~~~g----~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 443 (542)
T PRK07786 400 WFHSGDLVRQDEEG----YVWVVDRKKDMIISGGENIYCAEVENVLAS 443 (542)
T ss_pred cccccceEEEcCCc----eEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 35788888888888 799999999986555555556677776654
No 257
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=32.97 E-value=50 Score=26.40 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=30.3
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-+|.+| .+.+.||.||....++..+.-.+++.++.+
T Consensus 413 ~TGDl~~~~~~g----~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 454 (542)
T PRK06018 413 DTGDVATIDAYG----YMRITDRSKDVIKSGGEWISSIDLENLAVG 454 (542)
T ss_pred EcCCEEEEcCCc----cEEEEecCCCeEEECCEEECHHHHHHHHHh
Confidence 444555667777 699999999986656666667777776654
No 258
>PRK06188 acyl-CoA synthetase; Validated
Probab=32.87 E-value=52 Score=26.01 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=30.4
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~ 73 (97)
-.|-+.+.+|.+| .+.+.||+|+.....+..+.-..++.+|.
T Consensus 395 ~~TGDl~~~~~~g----~~~~~GR~~~~i~~~G~~i~~~~IE~~l~ 436 (524)
T PRK06188 395 LHTGDVAREDEDG----FYYIVDRKKDMIVTGGFNVFPREVEDVLA 436 (524)
T ss_pred eeecceEEEcCCc----cEEEEeccccceecCCEEECHHHHHHHHH
Confidence 4677888889888 69999999998655555555556665553
No 259
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=32.63 E-value=47 Score=26.14 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=30.6
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
.|=+..-+|.+| .+.|.||.||.....+..+.-..++.+|..
T Consensus 401 ~TGDl~~~~~~g----~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~ 442 (517)
T PRK08008 401 HTGDTGYVDEEG----FFYFVDRRCNMIKRGGENVSCVELENIIAT 442 (517)
T ss_pred eccceEEECCCC----cEEEeecccceEEeCCEEECHHHHHHHHHh
Confidence 566677788888 699999999986555555556677776644
No 260
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=32.41 E-value=41 Score=25.05 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=19.7
Q ss_pred EeChhhHHHHhCCccCceEEEEecCC
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDG 40 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g 40 (97)
++...++++.+|...||.+++- +|
T Consensus 188 v~~~~~la~~lgi~gTPtiv~~--~G 211 (232)
T PRK10877 188 IADHYALGVQFGVQGTPAIVLS--NG 211 (232)
T ss_pred HHHhHHHHHHcCCccccEEEEc--CC
Confidence 4677899999999999988843 55
No 261
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=32.22 E-value=21 Score=27.07 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.3
Q ss_pred eEEEEecCCCCCeeEEEeeec
Q 034345 32 EFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 32 e~fvld~~g~~~~~l~Y~G~I 52 (97)
.-++||..| ..|||+|
T Consensus 182 ~kVvFDRgG-----y~YHGRV 197 (211)
T PTZ00032 182 SKVRFDRAH-----YKYAGKV 197 (211)
T ss_pred CEEEEeCCC-----CeehhHH
Confidence 448999888 7999986
No 262
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=32.08 E-value=52 Score=26.35 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=31.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|-+..-++.+| .+.+.||.||.....+..+.-..++.+|..
T Consensus 434 ~~TGDl~~~~~~g----~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~ 476 (560)
T PRK08974 434 LATGDIAVMDEEG----FLRIVDRKKDMILVSGFNVYPNEIEDVVML 476 (560)
T ss_pred cccCCEEEEcCCc----eEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 4666666777887 699999999886555555555677777654
No 263
>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens). Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 1U0K_A 1QYA_B 1QY9_D 1SDJ_A 1U1X_A 1U1W_B 1T6K_A 1XUA_A 1XUB_A 1U1V_A ....
Probab=31.39 E-value=1.2e+02 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=29.8
Q ss_pred hhhcceeEEEeCh-------hhHHHHhCCccCceEEEEec--CCCCCeeEEEeee
Q 034345 6 YLFLMWLITLFQS-------QDVARDFGAACTPEFFLFKK--DGRRPFQLVYHGQ 51 (97)
Q Consensus 6 ~~~~~fpvL~D~~-------q~va~a~gA~~TPe~fvld~--~g~~~~~l~Y~G~ 51 (97)
+...|-.|++|.+ |.+|+.++..- ++||+.. +... +++||.-.
T Consensus 9 f~GNp~aVv~~~~~l~~~~mq~iA~e~n~sE--T~Fv~~~~~~~~~-~~vR~FTp 60 (281)
T PF02567_consen 9 FGGNPAAVVLDADGLSDEQMQAIAREFNLSE--TAFVLPSTDDEAD-YRVRIFTP 60 (281)
T ss_dssp TSSEEEEEEESSTTS-HHHHHHHHHHHTSSE--EEEEEEESSSTTS-EEEEEEES
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHcCCCe--eEEEEeccCCCce-eEEEEEec
Confidence 5566777777766 78899998433 3788887 2322 79999854
No 264
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=31.30 E-value=73 Score=26.98 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=37.0
Q ss_pred hhHHHHh-----C--CccCceEEEEecCCCCCeeEEEeeecCCCCC-CCCCCCcHHHHHHHH
Q 034345 19 QDVARDF-----G--AACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAI 72 (97)
Q Consensus 19 q~va~a~-----g--A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~-~~~~~~t~~~L~~Ai 72 (97)
...+++| | --+|=+..-+|.+| .+.+.||.||... ..++.+.-..++.+|
T Consensus 521 e~T~~~f~~d~~G~~W~~TGDig~~d~dG----~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l 578 (696)
T PLN02387 521 EKTDEVYKVDERGMRWFYTGDIGQFHPDG----CLEIIDRKKDIVKLQHGEYVSLGKVEAAL 578 (696)
T ss_pred HHHhhhhccccCCCceeecCceEEECCCC----cEEEEEcccceEECCCCeEEchHHHHHHH
Confidence 3556666 2 45788999999999 7999999999865 346666666777655
No 265
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=30.86 E-value=54 Score=25.82 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=32.6
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
+|=+.+.++.+| .+.+.||.||.....+..+.-..++.+|.++
T Consensus 387 ~TGD~~~~~~~g----~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~ 429 (508)
T TIGR02262 387 RSGDKYVRNDDG----SYTYAGRTDDMLKVSGIYVSPFEIESALIQH 429 (508)
T ss_pred eccceEEEcCCc----cEEEeccccceeeeCCEEECHHHHHHHHHhC
Confidence 677778888888 6999999999965556666667787777553
No 266
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=29.85 E-value=37 Score=20.33 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=19.5
Q ss_pred hHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 20 DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 20 ~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
++.+.+..-.+-.+||+|++| .+.+|-..
T Consensus 43 ~~i~~~~~~~~g~~~ivd~~G----~ii~hp~~ 71 (81)
T PF02743_consen 43 EIISNIKFGNNGYAFIVDKNG----TIIAHPDK 71 (81)
T ss_dssp HHHTTSBBTTTBEEEEEETTS----BBCE-SSG
T ss_pred eEEEeeEECCCEEEEEEECCC----CEEEeCCh
Confidence 333444555677899999999 67777543
No 267
>PLN02734 glycyl-tRNA synthetase
Probab=29.63 E-value=2.3e+02 Score=25.17 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=45.4
Q ss_pred hhcceeEEEeChh-hHHHHhC-C--ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345 7 LFLMWLITLFQSQ-DVARDFG-A--ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (97)
Q Consensus 7 ~~~~fpvL~D~~q-~va~a~g-A--~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~ 79 (97)
+...+-+.+|.++ .+.+.|. | ..+|-+++++.+|. ++++-+ |.. ....+....+-+.|.+++.|+
T Consensus 596 R~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~dgt--VTIRdR---dsg---eQ~rV~ldeLv~~I~~li~~~ 664 (684)
T PLN02734 596 TAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDSDGS--VTIRER---DSK---DQVRVPVEEVASVVKDLTDGR 664 (684)
T ss_pred HhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECCCCe--EEEEEC---CCC---ceEEeeHHHHHHHHHHHHcCC
Confidence 3446788888776 8888885 3 69999999998663 455555 222 122345667888888888775
No 268
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=29.06 E-value=2.8e+02 Score=24.10 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=49.3
Q ss_pred HhhhhcceeEEEeChhhHHHHhC---CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345 4 ELYLFLMWLITLFQSQDVARDFG---AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 79 (97)
Q Consensus 4 ~~~~~~~fpvL~D~~q~va~a~g---A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~ 79 (97)
+..+...|.+.+|++|.+++.|. ...||-++=+|-+.-..-.+.-|=| |.. .+ ..++..+|...|..++.|.
T Consensus 480 ~~L~~~~~~v~yDdsGsIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReR-Ds~-~Q--vRv~i~el~~~l~~~~~~~ 554 (558)
T COG0423 480 EKLRELGFNVDYDDSGSIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRER-DSM-EQ--VRVKIEELADYLRELIKGG 554 (558)
T ss_pred HHHHhcCceEEecCCCcHhhhhhhccccCCceEEEecCCcccCCcEEEeec-Cch-he--eeeeHHHHHHHHHHHhccc
Confidence 34456679999999999999995 6799999999976411002333322 221 22 3556778999998888775
No 269
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=28.74 E-value=99 Score=26.02 Aligned_cols=50 Identities=12% Similarity=-0.094 Sum_probs=36.3
Q ss_pred hHHHHh--CCccCceEEEEecCCCCCeeEEEeeecCCCCC-CCCCCCcHHHHHHHHH
Q 034345 20 DVARDF--GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIE 73 (97)
Q Consensus 20 ~va~a~--gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~-~~~~~~t~~~L~~Ai~ 73 (97)
..+.+| |--+|=+..-+|++| .|.+.||.||... ..++.+.-..++.++.
T Consensus 485 ~t~~~~~dGw~~TGDig~~d~dG----~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~ 537 (660)
T PLN02430 485 LTEEVMKDGWFHTGDIGEILPNG----VLKIIDRKKNLIKLSQGEYVALEYLENVYG 537 (660)
T ss_pred HhhhhhhccceeccceEEECCCC----cEEEEEcccccEEcCCCcEEchHHHHHHHh
Confidence 445555 456899989999999 6999999999864 3466665666666553
No 270
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=28.68 E-value=1.8e+02 Score=25.06 Aligned_cols=27 Identities=7% Similarity=0.028 Sum_probs=24.1
Q ss_pred eeEEEeChhhHHHHhC---CccCceEEEEe
Q 034345 11 WLITLFQSQDVARDFG---AACTPEFFLFK 37 (97)
Q Consensus 11 fpvL~D~~q~va~a~g---A~~TPe~fvld 37 (97)
|-+.+|+++.+.+.|. ...||=++++|
T Consensus 466 ~rv~~DdsesIGKKyRraDeiGiPy~ITVD 495 (539)
T PRK14894 466 MRTVYDDTGAIGKLYRRQDEIGTPFCITVD 495 (539)
T ss_pred ceEEEcCCCCHhHHHHhhhccCCCEEEEEe
Confidence 4899999999999996 55999999996
No 271
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=28.50 E-value=74 Score=25.46 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=31.0
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+|.+| .+.+.||.||.-...+..+.-.+++.+|..
T Consensus 411 ~~TGDl~~~d~~G----~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~ 453 (536)
T PRK10946 411 YCSGDLVSIDPDG----YITVVGREKDQINRGGEKIAAEEIENLLLR 453 (536)
T ss_pred eecCceEEECCCC----cEEEeccccceeecCCEEEcHHHHHHHHHh
Confidence 4566666788888 699999999986555555555677776654
No 272
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=28.31 E-value=53 Score=26.53 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=32.8
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 75 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al 75 (97)
-+|=+..-+|.+| .+.+.||.||.-...+..+.-..++.+|.+.
T Consensus 434 ~~TGDl~~~~~~g----~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~ 477 (570)
T PRK04319 434 YVSGDSAYMDEDG----YFWFQGRVDDVIKTSGERVGPFEVESKLMEH 477 (570)
T ss_pred eEeCcEEEECCCe----eEEEEecCCCEEEECCEEECHHHHHHHHhhC
Confidence 3566677788888 7999999999865556666667788777654
No 273
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=28.06 E-value=1.8e+02 Score=21.04 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=25.4
Q ss_pred eeEEEeChh--hHHHHh--------CCccCceEEEEecCCCCCeeEEEeee
Q 034345 11 WLITLFQSQ--DVARDF--------GAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 11 fpvL~D~~q--~va~a~--------gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
.||.+|... .+.+.| |.-..|....++++| +..|-|.
T Consensus 74 I~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg----~p~~~~t 120 (163)
T PF03190_consen 74 IPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDG----KPFFGGT 120 (163)
T ss_dssp EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-----EEEEES
T ss_pred EEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCC----Ceeeeee
Confidence 577777654 677777 888999999999999 6888774
No 274
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.42 E-value=69 Score=21.78 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=19.7
Q ss_pred CCccCceEEEEecC----------CCCCeeEEEeeecCCC
Q 034345 26 GAACTPEFFLFKKD----------GRRPFQLVYHGQFDDS 55 (97)
Q Consensus 26 gA~~TPe~fvld~~----------g~~~~~l~Y~G~IDd~ 55 (97)
|....=++||||.. |. .+.|+|+||=+
T Consensus 16 g~~q~R~~FLFD~~LI~CKkd~~r~~---~~~yKgri~l~ 52 (109)
T cd01224 16 GWNSSRVLFLFDHQMVLCKKDLIRRD---HLYYKGRIDLD 52 (109)
T ss_pred CCcccEEEEEecceEEEEecccccCC---cEEEEEEEEcc
Confidence 55556689999853 32 69999999754
No 275
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=27.07 E-value=1.3e+02 Score=21.11 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=21.8
Q ss_pred ChhhHHHHhCCc--cCceEEEEecCCCCCeeEEE
Q 034345 17 QSQDVARDFGAA--CTPEFFLFKKDGRRPFQLVY 48 (97)
Q Consensus 17 ~~q~va~a~gA~--~TPe~fvld~~g~~~~~l~Y 48 (97)
++.++|+.||+. .-|-++|+-.+.+. -+.|
T Consensus 69 ~N~~Laery~i~ke~fPv~~LF~~~~~~--pv~~ 100 (126)
T PF07912_consen 69 ENMELAERYKIDKEDFPVIYLFVGDKEE--PVRY 100 (126)
T ss_dssp CCHHHHHHTT-SCCC-SEEEEEESSTTS--EEEE
T ss_pred hHHHHHHHhCCCcccCCEEEEecCCCCC--CccC
Confidence 346899999984 56999999866553 6888
No 276
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=26.71 E-value=50 Score=23.33 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.2
Q ss_pred EEeChhhHHHHhCCccCceEE
Q 034345 14 TLFQSQDVARDFGAACTPEFF 34 (97)
Q Consensus 14 L~D~~q~va~a~gA~~TPe~f 34 (97)
-++...++++.+|...||.++
T Consensus 157 ~i~~~~~l~~~~gi~gtPtii 177 (197)
T cd03020 157 PVAANLALGRQLGVNGTPTIV 177 (197)
T ss_pred hHHHHHHHHHHcCCCcccEEE
Confidence 346777999999999999997
No 277
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=26.44 E-value=71 Score=24.80 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=29.3
Q ss_pred ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
-+|=+..-+ .+| .+.+.||.||.....+..+.-.++++++..
T Consensus 378 ~~tGD~~~~-~~g----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 419 (503)
T PRK04813 378 YHTGDAGYL-EDG----LLFYQGRIDFQIKLNGYRIELEEIEQNLRQ 419 (503)
T ss_pred EECCceEEe-eCC----eEEEeccccceEEECcEEeCHHHHHHHHHh
Confidence 355565566 666 799999999886656666666677766654
No 278
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=26.37 E-value=79 Score=26.29 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=24.1
Q ss_pred hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345 18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I 52 (97)
-+++++.|+...||++|+ +| ++.|.|+.
T Consensus 518 ~~~~~~~~~v~~vP~~~i---~~----~~~~~G~~ 545 (555)
T TIGR03143 518 FPDLKDEYGIMSVPAIVV---DD----QQVYFGKK 545 (555)
T ss_pred cHHHHHhCCceecCEEEE---CC----EEEEeeCC
Confidence 368999999999999998 56 68899986
No 279
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=25.93 E-value=77 Score=23.97 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=27.2
Q ss_pred hhHHHHh---CCccCceEEEEecCCCCCeeEEEeeecCCC
Q 034345 19 QDVARDF---GAACTPEFFLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 19 q~va~a~---gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
...+++| |--+|=+.+-+|++| .+.+.||.||.
T Consensus 378 ~~~~~~~~~~~~~~TGD~g~~d~~G----~~~~~GR~~~~ 413 (417)
T PF00501_consen 378 ELTAEAFIDDGWYRTGDLGRLDEDG----YLYILGRSDDM 413 (417)
T ss_dssp HHHHHHEETTSEEEEEEEEEEETTS----EEEEEEEGSCE
T ss_pred cccccccccccceecceEEEECCCC----eEEEEEeeCCE
Confidence 4556667 356999999999998 89999999985
No 280
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.84 E-value=1.8e+02 Score=22.25 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=35.1
Q ss_pred hHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCC---CCCcHHHHHHHHHHHHc
Q 034345 20 DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNN---LPVTGRDIRLAIECVLS 77 (97)
Q Consensus 20 ~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~---~~~t~~~L~~Ai~alLa 77 (97)
.+|+.+||..-|-...-.++|. +++.+.-.++.....+. .......+.+++|+.+.
T Consensus 236 ~LA~~~~apVvp~~~~R~~~g~--y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir 294 (308)
T PRK06553 236 KLARQYDCPVHGARCIRLPGGR--FRLELTERVELPRDADGQIDVQATMQALTDVVEGWVR 294 (308)
T ss_pred HHHHHHCCCEEEEEEEEcCCCe--EEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 6899999999997777777764 78888877775421111 11223344456666544
No 281
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=25.81 E-value=93 Score=25.65 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=25.1
Q ss_pred EEeC--hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345 14 TLFQ--SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (97)
Q Consensus 14 L~D~--~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID 53 (97)
++|. +..+|+++|...-+..||+-.+. ++-|.|..+
T Consensus 95 ~VD~~Kd~klAKKLgv~E~~SiyVfkd~~----~IEydG~~s 132 (383)
T PF01216_consen 95 MVDSKKDAKLAKKLGVEEEGSIYVFKDGE----VIEYDGERS 132 (383)
T ss_dssp EEETTTTHHHHHHHT--STTEEEEEETTE----EEEE-S--S
T ss_pred EeccHHHHHHHHhcCccccCcEEEEECCc----EEEecCccC
Confidence 3454 45789999999999999997776 899999864
No 282
>PRK13383 acyl-CoA synthetase; Provisional
Probab=25.09 E-value=71 Score=25.28 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=30.0
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-+|.+| .+.+.||.||--...+..+.-..++.+|.+
T Consensus 399 ~TGDl~~~d~~G----~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~ 440 (516)
T PRK13383 399 STGDMGYLDNAG----RLFIVGREDDMIISGGENVYPRAVENALAA 440 (516)
T ss_pred ecceeEEEcCCc----cEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 466667778888 689999999886555555555677766654
No 283
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=24.89 E-value=2.8e+02 Score=21.67 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=35.1
Q ss_pred hhhhcceeEEEeChhhH-----------------------HHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCC
Q 034345 5 LYLFLMWLITLFQSQDV-----------------------ARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNL 61 (97)
Q Consensus 5 ~~~~~~fpvL~D~~q~v-----------------------a~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~ 61 (97)
+.+.+.+||++|+++.| |-+.|| +| +-+--|=--|.+.+..+.
T Consensus 170 ~~k~~~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~Ga-----------DG---l~iEvHpdP~~AlsDg~q 235 (258)
T TIGR01362 170 IMRELGCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGI-----------DG---LFMETHPDPKNAKSDGPN 235 (258)
T ss_pred HHHhcCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCC-----------CE---EEEEeCCCccccCCCccc
Confidence 34556899999999972 234444 33 344445455555544445
Q ss_pred CCcHHHHHHHHHHHH
Q 034345 62 PVTGRDIRLAIECVL 76 (97)
Q Consensus 62 ~~t~~~L~~Ai~alL 76 (97)
..+-..++.-++.+.
T Consensus 236 ~l~~~~~~~ll~~l~ 250 (258)
T TIGR01362 236 MLPLSELEGLLEKLL 250 (258)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666667777666554
No 284
>PF15603 Imm45: Immunity protein 45
Probab=24.89 E-value=1.9e+02 Score=18.64 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=23.0
Q ss_pred eEEEeeecCCCCCCCC-CCCcHHHHHHHHHHH
Q 034345 45 QLVYHGQFDDSRPSNN-LPVTGRDIRLAIECV 75 (97)
Q Consensus 45 ~l~Y~G~IDd~~~~~~-~~~t~~~L~~Ai~al 75 (97)
=++|+.-|+.+.+++. ++.+..++...|+++
T Consensus 37 Fvvy~~si~~We~P~e~~~it~~e~q~II~aI 68 (82)
T PF15603_consen 37 FVVYKDSIKNWEPPHENEPITIAERQKIIEAI 68 (82)
T ss_pred EEEEccccccccCCCCCcccCHHHHHHHHHHH
Confidence 5889999999877665 477777777655554
No 285
>PRK13391 acyl-CoA synthetase; Provisional
Probab=24.40 E-value=89 Score=24.66 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=29.6
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-++.+| .+.+.||.||.....+..+.-..++.+|.+
T Consensus 385 ~TGD~g~~~~~g----~l~~~gR~~~~i~~~G~~v~~~eie~~l~~ 426 (511)
T PRK13391 385 TVGDIGYVDEDG----YLYLTDRAAFMIISGGVNIYPQEAENLLIT 426 (511)
T ss_pred ecCCEEEECCCc----cEEEeccCCCEEEeCCEEECHHHHHHHHHh
Confidence 466677788888 699999999986555555555566666543
No 286
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=24.30 E-value=1.4e+02 Score=24.46 Aligned_cols=29 Identities=7% Similarity=-0.177 Sum_probs=24.4
Q ss_pred eeEEEeChhhHHHHhCCccCceEEEEecCC
Q 034345 11 WLITLFQSQDVARDFGAACTPEFFLFKKDG 40 (97)
Q Consensus 11 fpvL~D~~q~va~a~gA~~TPe~fvld~~g 40 (97)
.+.+.|.++.+++.|+... ..++|+-+++
T Consensus 482 ~~~~~d~~g~~~~~~~~~~-~~~~lvRPD~ 510 (538)
T PRK06183 482 DDHDSDVDGALRAWLARHG-ASAVLLRPDR 510 (538)
T ss_pred CceeecCCchHHHHHHhCC-CEEEEECCCE
Confidence 3467799999999999754 6899999998
No 287
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=23.49 E-value=74 Score=19.64 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=26.6
Q ss_pred EEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 33 FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 33 ~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
.|.++++|. +.+-|.|.|.=+ -.|...+++.|...++.
T Consensus 32 ~~~V~~dG~--I~lP~iG~v~v~------G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 32 EYTVDPDGT--ISLPLIGPVKVA------GLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp SEE--TTSE--EEETTTEEEE-T------T--HHHHHHHHHHHHTT
T ss_pred ceEECCCCc--EeecccceEEEC------CCCHHHHHHHHHHHHHH
Confidence 678899996 788888988655 34677889999888877
No 288
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=23.47 E-value=45 Score=20.07 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.2
Q ss_pred ChhhHHHHhCCccCceE
Q 034345 17 QSQDVARDFGAACTPEF 33 (97)
Q Consensus 17 ~~q~va~a~gA~~TPe~ 33 (97)
.-+.+|++||-..+|.+
T Consensus 47 ~l~~~A~sfGL~~~P~v 63 (65)
T PF13959_consen 47 DLGHLAKSFGLLEAPKV 63 (65)
T ss_pred CHHHHHHHcCCCCCCCC
Confidence 34789999999999964
No 289
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=23.46 E-value=2.2e+02 Score=21.66 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=33.3
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG 78 (97)
..+|+.+||..-|-..+-+++|.+ +++...-.+++.+ ........++-+++|+.+.-
T Consensus 226 ~~LA~~~~apvvp~~~~R~~~~~~-~~i~~~~~~~~~~--~~~~~~~~~~n~~lE~~Ir~ 282 (305)
T PRK08025 226 YVLSRLSGAAMLTVTMVRKADYSG-YRLFITPEMEGYP--TDENQAAAYMNKIIEKEIMR 282 (305)
T ss_pred HHHHHhhCCeEEEEEEEEeCCCCe-EEEEEeCCccCCC--CCHHHHHHHHHHHHHHHHHc
Confidence 367888888888877776766643 5776655554432 22211234555566665543
No 290
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.31 E-value=1.2e+02 Score=20.51 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=24.2
Q ss_pred eeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345 44 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (97)
Q Consensus 44 ~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~ 80 (97)
|.++|-|-+-=. ++.+..-+.+||..|++.+.
T Consensus 4 F~VkyLG~~eV~-----~~~g~~vv~~ai~~L~~~~~ 35 (123)
T cd01216 4 FAVRSLGWVEVA-----EEDGSEALNKAIDDLSSCSN 35 (123)
T ss_pred EEEEeeeeEEEC-----CCCCHHHHHHHHHHHHhccc
Confidence 689999976433 33467789999999997665
No 291
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=23.24 E-value=84 Score=25.06 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=31.5
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
+|=+..-++.+| .+.+.||.||.-...+..+.-..++.+|.+
T Consensus 424 ~TGD~~~~~~~g----~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~ 465 (541)
T TIGR03205 424 LTGDIGYMDTDG----YFFLVDRKKDMIISGGFNVYPQMIEQAIYE 465 (541)
T ss_pred ccCceEEEcCCc----eEEEEccccCeEEECCEEECHHHHHHHHHh
Confidence 566677778887 689999999987656666666677777655
No 292
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=22.65 E-value=76 Score=25.65 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=32.5
Q ss_pred cceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee-cCCCCCCCCCCCcHHHHH
Q 034345 9 LMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ-FDDSRPSNNLPVTGRDIR 69 (97)
Q Consensus 9 ~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~-IDd~~~~~~~~~t~~~L~ 69 (97)
.+||+|.|..+....+|. |.+++.++| ..+..|. ++-........++...+.
T Consensus 304 ~~ypvl~e~~g~~Vaqf~-----~Tv~v~~~g----~~~~t~~~~~~~~~~s~~~~~d~~~~ 356 (389)
T TIGR00495 304 QPYPVLYEKEGEFVAQFK-----FTVLLMPNG----PMRITSGEFEPDLYKSEMEVQDPEIK 356 (389)
T ss_pred ccCCceEeeCCCeEEEEE-----EEEEECCCC----cEEeCCCCCCHhhcCCCCCCCCHHHH
Confidence 589999999987766665 568999999 4555554 443322333333443444
No 293
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=22.57 E-value=89 Score=21.71 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=25.5
Q ss_pred hcceeEEEeChhhHHHHhCCcc--CceEEEEecCCC
Q 034345 8 FLMWLITLFQSQDVARDFGAAC--TPEFFLFKKDGR 41 (97)
Q Consensus 8 ~~~fpvL~D~~q~va~a~gA~~--TPe~fvld~~g~ 41 (97)
.++|-..+|+.+.-..+|.+.- +=.+|++|+.|.
T Consensus 118 ~~~f~~~~gn~~~D~~~y~~~gi~~~~i~~i~~~~~ 153 (157)
T smart00775 118 GNPFYAGFGNRITDVISYSAVGIPPSRIFTINPKGE 153 (157)
T ss_pred CCCEEEEeCCCchhHHHHHHcCCChhhEEEECCCCc
Confidence 4555556888899999998553 336899999983
No 294
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=22.49 E-value=41 Score=24.36 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=29.8
Q ss_pred EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345 15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD 53 (97)
Q Consensus 15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID 53 (97)
-|..+++.+.|++.+-|...+++++|+ .|.=.||-+
T Consensus 101 d~~~~~l~~ky~v~~iP~l~i~~~dG~---~v~~d~r~~ 136 (157)
T KOG2501|consen 101 DDLIQKLSEKYEVKGIPALVILKPDGT---VVTEDARLL 136 (157)
T ss_pred CHHHHHHHHhcccCcCceeEEecCCCC---EehHhhHHH
Confidence 356789999999999999999999996 676666643
No 295
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=22.46 E-value=30 Score=29.04 Aligned_cols=34 Identities=6% Similarity=0.041 Sum_probs=26.4
Q ss_pred cceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEee
Q 034345 9 LMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 9 ~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G 50 (97)
.+||+|.|..+....+|. |.++|-++|+ .+.=+|
T Consensus 434 ~~Yp~L~e~~G~~VAQfe-----hTvll~p~~~---~vis~g 467 (470)
T PTZ00053 434 NPYPPLCDVRGSYTSQME-----HTILLRPTCK---EVLSRG 467 (470)
T ss_pred ccCCccCccCCCEEeEEE-----EEEEECCCCC---EecCCC
Confidence 479999999998877776 4677888885 565566
No 296
>PLN02309 5'-adenylylsulfate reductase
Probab=22.39 E-value=94 Score=25.92 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=23.7
Q ss_pred hhhHHH-HhCCccCceEEEEecCCCCCeeEEEee
Q 034345 18 SQDVAR-DFGAACTPEFFLFKKDGRRPFQLVYHG 50 (97)
Q Consensus 18 ~q~va~-a~gA~~TPe~fvld~~g~~~~~l~Y~G 50 (97)
...+++ .|+.+..|+++++.+.... .+.|.|
T Consensus 410 ~~~la~~~~~I~~~PTil~f~~g~~~--~v~Y~~ 441 (457)
T PLN02309 410 QKEFAKQELQLGSFPTILLFPKNSSR--PIKYPS 441 (457)
T ss_pred chHHHHhhCCCceeeEEEEEeCCCCC--eeecCC
Confidence 356775 6999999999999776642 577875
No 297
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=22.16 E-value=3.5e+02 Score=21.19 Aligned_cols=16 Identities=0% Similarity=-0.230 Sum_probs=13.1
Q ss_pred hhhhcceeEEEeChhh
Q 034345 5 LYLFLMWLITLFQSQD 20 (97)
Q Consensus 5 ~~~~~~fpvL~D~~q~ 20 (97)
+.+...+||++|+++.
T Consensus 178 ~~k~~~lPVi~DpSHs 193 (264)
T PRK05198 178 IMRETGAPVIFDATHS 193 (264)
T ss_pred HHhhCCCCEEEeCCcc
Confidence 4456779999999997
No 298
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=22.11 E-value=44 Score=22.84 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.3
Q ss_pred hhhHHHHhCCccCceEEE
Q 034345 18 SQDVARDFGAACTPEFFL 35 (97)
Q Consensus 18 ~q~va~a~gA~~TPe~fv 35 (97)
+.+.|+++|...||.++|
T Consensus 156 ~~~~a~~~gi~gvPtfvv 173 (192)
T cd03022 156 NTEEAIARGVFGVPTFVV 173 (192)
T ss_pred HHHHHHHcCCCcCCeEEE
Confidence 456778899999999988
No 299
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=22.06 E-value=14 Score=26.25 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=14.7
Q ss_pred EEEeChhhHHHHhCCccCceEE
Q 034345 13 ITLFQSQDVARDFGAACTPEFF 34 (97)
Q Consensus 13 vL~D~~q~va~a~gA~~TPe~f 34 (97)
|.+|+.|....-|||..-||+.
T Consensus 47 V~WDe~GMTWEVYGAs~DpEvL 68 (137)
T PF15235_consen 47 VSWDEQGMTWEVYGASVDPEVL 68 (137)
T ss_pred ceecCCCceEEEeccccCHHHH
Confidence 5567777777777777666654
No 300
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=21.93 E-value=2.5e+02 Score=18.54 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 31 PEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 31 Pe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
=-+|++|++| ++.|...-+..........-...+...++.+..
T Consensus 51 d~~~~~d~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (161)
T PF05228_consen 51 DLIFILDPDG----RVLYSSSKGYDFEPGSFDPIPPSLSQLISDLRA 93 (161)
T ss_pred cEEEEEcCCC----CEEEEeccCcccCccccccccHHHHHHHHHHHh
Confidence 3479999999 677844333222111111112245555555443
No 301
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.88 E-value=3.4e+02 Score=20.46 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=25.9
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCC
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
..+|+.+||...|-..+-++++. +++.+...++..
T Consensus 216 a~LA~~~~apvv~~~~~r~~~~~--~~i~~~~~~~~~ 250 (290)
T PRK06628 216 AKIALQYKYPIIPCQIIRTKGSY--FKVIVHPQLKFE 250 (290)
T ss_pred HHHHHHHCCCEEEEEEEECCCCe--EEEEEcCCCCCC
Confidence 46889999999998888776542 578877776543
No 302
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=21.78 E-value=1.7e+02 Score=23.13 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=27.5
Q ss_pred CCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 26 GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 26 gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
...-|--+||+|+.| ++|+.|--|-.+ ....-|-.++.-|+.
T Consensus 244 nN~l~GyV~L~D~s~----kIRW~g~G~aTp------~Eve~L~~~~k~L~~ 285 (287)
T KOG4614|consen 244 NNLLTGYVLLLDKSG----KIRWQGFGTATP------EEVEQLLSCTKLLLE 285 (287)
T ss_pred cceeeEEEEEEccCc----eEEEeecCCCCH------HHHHHHHHHHHHHhc
Confidence 355788899999999 899999754442 223345555544443
No 303
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.67 E-value=2.6e+02 Score=21.34 Aligned_cols=57 Identities=23% Similarity=0.144 Sum_probs=34.7
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
..+|+.+||..-|-..+-.++|.+ +.+..+-.++..+. .........+-+++|+.+.
T Consensus 226 a~LA~~~~apvvp~~~~r~~~g~~-~~i~~~~~~~~~~~-~~~~~~~~~~~~~lE~~Ir 282 (310)
T PRK05646 226 TKFARLGRARVIPFTQKRLADGSG-YRLVIHPPLEDFPG-ESEEADCLRINQWVERVVR 282 (310)
T ss_pred HHHHHhhCCcEEEEEEEEeCCCCe-EEEEEeCCCcCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 367899999999988888777743 57877666654322 2111122344455655543
No 304
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.52 E-value=2.6e+02 Score=21.29 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=33.7
Q ss_pred hHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345 20 DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77 (97)
Q Consensus 20 ~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa 77 (97)
.+|+.+||..-|-..+-+++|.+ +++...-.++... ..+.......+.+++|+...
T Consensus 229 ~LA~~~~apvvp~~~~R~~~~~~-~~i~~~~~~~~~~-~~d~~~~t~~~n~~lE~~Ir 284 (309)
T PRK06860 229 MLARMSKAAVIPFVPRRKPDGKG-YELIILPPEDSPP-LDDAEATAAWMNKVVEKCIL 284 (309)
T ss_pred HHHHHhCCeEEEEEEEEeCCCCe-EEEEEecCCCCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 58899999999988888887733 5777765554432 22222223344455555543
No 305
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=21.37 E-value=41 Score=23.02 Aligned_cols=14 Identities=36% Similarity=0.930 Sum_probs=11.4
Q ss_pred EEEecCCCCCeeEEEeeec
Q 034345 34 FLFKKDGRRPFQLVYHGQF 52 (97)
Q Consensus 34 fvld~~g~~~~~l~Y~G~I 52 (97)
++||..| -.|||+|
T Consensus 87 vvfDrgg-----~~YhGrv 100 (114)
T TIGR00060 87 VVFDRGG-----YKYHGRV 100 (114)
T ss_pred EEEeCCC-----CcchHHH
Confidence 5899876 7899985
No 306
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=21.20 E-value=3e+02 Score=19.30 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=25.9
Q ss_pred hhHHHHhCCc-cCceEEEEecCCCCCeeEEEeeecCCC
Q 034345 19 QDVARDFGAA-CTPEFFLFKKDGRRPFQLVYHGQFDDS 55 (97)
Q Consensus 19 q~va~a~gA~-~TPe~fvld~~g~~~~~l~Y~G~IDd~ 55 (97)
+.+-+.||+. ..+-++|+-++| -+.+.+.+|+.
T Consensus 124 ~~~~~~~gv~~~~g~vvvvRPDg----yVg~~~~~~~~ 157 (167)
T cd02979 124 GDAYEKYGIDPERGAVVVVRPDQ----YVALVGPLDDV 157 (167)
T ss_pred ccHHHhhCCCCCCCCEEEECCCC----eEEEEeccccH
Confidence 5677999977 458899999999 57777777554
No 307
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=21.09 E-value=2.3e+02 Score=18.88 Aligned_cols=51 Identities=22% Similarity=0.102 Sum_probs=34.4
Q ss_pred HHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345 22 ARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 80 (97)
Q Consensus 22 a~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~ 80 (97)
...+.-..-|+.+.| ++.|.|.-++..|...+...-..++++|...|.+..
T Consensus 26 ~~~~~~~~~~~~v~i--------~i~y~~~~e~GlP~~ee~~~L~~iEd~i~~~l~~~~ 76 (136)
T PF05117_consen 26 IEFAPKASYPWRVQI--------SIKYKGPDENGLPSEEEYEELNDIEDAIIEALEADG 76 (136)
T ss_pred hhhCcccCCCEEEEE--------EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence 333334445555554 789999878887665555556778889988887655
No 308
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=20.84 E-value=1.2e+02 Score=24.87 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=29.1
Q ss_pred cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHH
Q 034345 29 CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73 (97)
Q Consensus 29 ~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~ 73 (97)
+|=+...++ +| .+.+.||+||.-..++..+.-.+++.+|.
T Consensus 479 ~TGDlg~~~-dG----~l~i~GR~~d~I~~~G~~I~p~eIE~~l~ 518 (612)
T PRK12476 479 RTGDLGVYL-DG----ELYITGRIADLIVIDGRNHYPQDIEATVA 518 (612)
T ss_pred eccccceeE-CC----EEEEEeccCcEEEECCcccCHHHHHHHHH
Confidence 444444455 77 79999999999766677777778887764
No 309
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=20.83 E-value=1.1e+02 Score=17.15 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=12.0
Q ss_pred hHHHHhCCccCceEEE
Q 034345 20 DVARDFGAACTPEFFL 35 (97)
Q Consensus 20 ~va~a~gA~~TPe~fv 35 (97)
++.+..|...+|.+|+
T Consensus 40 ~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 40 ELKELSGVRTVPQVFI 55 (60)
T ss_dssp HHHHHHSSSSSSEEEE
T ss_pred HHHHHcCCCccCEEEE
Confidence 3334459999999997
No 310
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=20.57 E-value=98 Score=25.48 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=25.2
Q ss_pred hhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345 19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ 51 (97)
Q Consensus 19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ 51 (97)
..+|..||.+..|+.-++..+- .+-|||.
T Consensus 90 ~aiAnefgiqGYPTIk~~kgd~----a~dYRG~ 118 (468)
T KOG4277|consen 90 PAIANEFGIQGYPTIKFFKGDH----AIDYRGG 118 (468)
T ss_pred hhhHhhhccCCCceEEEecCCe----eeecCCC
Confidence 3789999999999999997665 8999985
No 311
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=20.44 E-value=63 Score=24.62 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=32.6
Q ss_pred hhcceeEEEeChhhH------------HHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345 7 LFLMWLITLFQSQDV------------ARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74 (97)
Q Consensus 7 ~~~~fpvL~D~~q~v------------a~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a 74 (97)
..+.+||.+|+++.. |-++|| +| +.+--|=-.|.+.+......+-..|+.-++.
T Consensus 191 ~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga-----------~g---l~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~ 256 (260)
T TIGR01361 191 KETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGA-----------DG---LMIEVHPDPEKALSDSKQQLTPEEFKRLVKE 256 (260)
T ss_pred HhhCCCEEEcCCCCCCccchHHHHHHHHHHcCC-----------CE---EEEEeCCCccccCCcchhcCCHHHHHHHHHH
Confidence 346899999988733 345565 33 2344444555554333345556677776665
Q ss_pred HH
Q 034345 75 VL 76 (97)
Q Consensus 75 lL 76 (97)
+.
T Consensus 257 i~ 258 (260)
T TIGR01361 257 LR 258 (260)
T ss_pred Hh
Confidence 53
Done!