Query 034347
Match_columns 97
No_of_seqs 106 out of 436
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 21:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034347.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034347hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tqna_ a.104.1.1 (A:) Mammali 97.3 5.6E-05 4.1E-09 54.2 2.5 42 37-96 4-45 (472)
2 d3czha1 a.104.1.1 (A:40-502) V 94.3 0.0065 4.8E-07 42.4 1.5 37 45-96 2-38 (463)
3 d2ij2a1 a.104.1.1 (A:3-455) Cy 92.9 0.011 7.7E-07 42.2 0.5 38 42-96 1-38 (453)
4 d1r9oa_ a.104.1.1 (A:) Mammali 90.6 0.032 2.3E-06 39.0 0.8 35 45-96 6-40 (467)
5 d1po5a_ a.104.1.1 (A:) Mammali 85.3 0.14 1E-05 35.7 1.4 35 45-96 5-39 (465)
6 d2ciba1 a.104.1.1 (A:5-449) Cy 78.6 0.24 1.8E-05 34.6 0.5 34 45-96 4-37 (445)
7 d2odgc1 a.140.1.1 (C:2-47) Inn 36.0 10 0.00073 19.5 1.8 14 34-47 10-24 (46)
8 d1rh5a_ f.41.1.1 (A:) Preprote 33.3 34 0.0024 24.4 5.1 25 21-45 329-354 (422)
9 d1ulza3 d.142.1.2 (A:115-328) 32.0 30 0.0022 21.4 4.3 32 34-65 3-35 (214)
10 d2guka1 d.360.1.1 (A:4-114) Hy 29.1 12 0.00086 22.7 1.6 42 35-76 37-89 (111)
11 d1eh9a3 c.1.8.1 (A:91-490) Gly 27.2 6.6 0.00048 26.5 0.2 21 53-73 74-94 (400)
12 d2r8ba1 c.69.1.14 (A:44-246) U 24.9 15 0.0011 22.1 1.6 20 74-93 184-203 (203)
13 d1n97a_ a.104.1.1 (A:) Cyp175a 24.2 8.2 0.00059 26.2 0.2 15 82-96 21-35 (385)
14 d1bi5a2 c.95.1.2 (A:236-389) C 23.7 73 0.0053 19.3 4.9 56 32-96 45-103 (154)
15 d1t3ba1 c.47.1.9 (A:61-210) Di 22.4 17 0.0013 21.7 1.5 16 39-55 114-129 (150)
No 1
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.26 E-value=5.6e-05 Score=54.25 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=33.2
Q ss_pred HHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034347 37 KFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 37 ~~lr~QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
..++|.||+||++-.++||+-++.+ ...-++.+|.++||++|
T Consensus 4 ~~~~~~~iPGP~~~P~iG~~~~~~~------------------~~~~~~~~~~~kyG~i~ 45 (472)
T d1tqna_ 4 GLFKKLGIPGPTPLPFLGNILSYHK------------------GFCMFDMECHKKYGKVW 45 (472)
T ss_dssp THHHHTTCCCCCCBTTTBTGGGGGG------------------CHHHHHHHHHHHHCSEE
T ss_pred cchhhcCCCCCCCcCceeEHHHhhC------------------CHHHHHHHHHHHhCCEE
Confidence 3688999999999889999865532 22347889999999876
No 2
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.34 E-value=0.0065 Score=42.37 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=27.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034347 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
+||+.-+++||+.++.. +...+. -+++++.++||++|
T Consensus 2 PGP~~~P~iG~~~~~~~-------------~~~~~~--~~~~~~~~kyG~if 38 (463)
T d3czha1 2 PGPPGLPFIGNIYSLAA-------------SSELPH--VYMRKQSQVYGEIF 38 (463)
T ss_dssp CCCCCBTTTBHHHHHHH-------------CSSCHH--HHHHHHHHHHCSEE
T ss_pred cCCCCcCccccHHHhhC-------------CCCcHH--HHHHHHHHHhCCEE
Confidence 58988889999988865 111122 27899999999986
No 3
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=92.94 E-value=0.011 Score=42.20 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=28.1
Q ss_pred cCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034347 42 QGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 42 QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
+.|+||++-.++||+.++.+ .+ ..-++.+|.++||++|
T Consensus 1 r~iPGP~~~p~lG~l~~l~~-------------~~----~~~~~~~~~~kyG~if 38 (453)
T d2ij2a1 1 KEMPQPKTFGELKNLPLLNT-------------DK----PVQALMKIADELGEIF 38 (453)
T ss_dssp CCCCCCCCCGGGTTGGGGCS-------------SC----HHHHHHHHHHHHCSEE
T ss_pred CCCccCCCcchhhCHHHhCC-------------CC----HHHHHHHHHHHhCCEE
Confidence 46899999999999855421 12 1247789999999876
No 4
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.62 E-value=0.032 Score=39.02 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=20.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034347 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
+||++-.++||+.++.. +| ...++.+|.++||++|
T Consensus 6 PGP~~~P~lG~~~~l~~-------------~~----~~~~~~~~~~kyG~i~ 40 (467)
T d1r9oa_ 6 PGPTPLPVIGNILQIGI-------------KD----ISKSLTNLSKVYGPVF 40 (467)
T ss_dssp CCSSSCC-----CCBCH-------------HH----HHHHHHHHHHHHCSEE
T ss_pred cCCCCCCccccHHHhCC-------------cC----HHHHHHHHHHHhCCEE
Confidence 48988889999854421 12 2236789999999876
No 5
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=85.34 E-value=0.14 Score=35.70 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034347 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
+||++-.++||+.++.+ +| ..-++.++.++||++|
T Consensus 5 PgP~~~P~lG~~~~~~~-------------~~----~~~~~~~~~~kyG~vf 39 (465)
T d1po5a_ 5 PGPSPLPVLGNLLQMDR-------------KG----LLRSFLRLREKYGDVF 39 (465)
T ss_dssp CCSCCBTTTBTGGGCCT-------------TC----HHHHHHHHHHHHCSEE
T ss_pred CCCCCcCccccHHHhcC-------------cC----HHHHHHHHHHHhCCEE
Confidence 68888788999855422 22 2247889999999986
No 6
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=78.64 E-value=0.24 Score=34.61 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=26.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034347 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
+||..-.++||+.++.+ | | ..++.++.++||++|
T Consensus 4 ~~p~~~P~iG~~~~f~~--------------d--~--~~f~~~~~~kyG~if 37 (445)
T d2ciba1 4 RVSGGHDEHGHLEEFRT--------------D--P--IGLMQRVRDELGDVG 37 (445)
T ss_dssp BCSCCCBTTBTHHHHTT--------------C--H--HHHHHHHHHHHCSEE
T ss_pred CCCCCcCcCcCHHHHhH--------------C--H--HHHHHHHHHHHCCEE
Confidence 37888889999988754 3 1 247899999999986
No 7
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.96 E-value=10 Score=19.51 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCC-CC
Q 034347 34 KLEKFLRQQGLK-GN 47 (97)
Q Consensus 34 rl~~~lr~QGI~-Gp 47 (97)
-|.+.|++-||+ ||
T Consensus 10 El~~lL~~y~I~HGP 24 (46)
T d2odgc1 10 ELTTLLRRYNIPHGP 24 (46)
T ss_dssp HHHHHHHHTTCCCCC
T ss_pred HHHHHHHHhCCCCCC
Confidence 467889999996 65
No 8
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=33.34 E-value=34 Score=24.43 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=13.7
Q ss_pred HHHHHHHHH-hchHHHHHHHHHcCCC
Q 034347 21 AWRVLNWVW-LRPKKLEKFLRQQGLK 45 (97)
Q Consensus 21 ~~~~~~~~w-~rP~rl~~~lr~QGI~ 45 (97)
+.+++...- ..|+.+.+.|++||.-
T Consensus 329 Fs~f~~~~~~~~p~~iAe~lkk~g~~ 354 (422)
T d1rh5a_ 329 FGIFWVETTGLDPKSMAKRIGSLGMA 354 (422)
T ss_dssp HHHHHHHHHTCSHHHHHHHC------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 344444444 7899999999999863
No 9
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}
Probab=32.01 E-value=30 Score=21.40 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCCCCC-CcCCCCCHHHHHHHHHH
Q 034347 34 KLEKFLRQQGLKGNS-YRLLFGDLKENSIELKE 65 (97)
Q Consensus 34 rl~~~lr~QGI~Gpp-~~~l~Gn~~e~~~~~~~ 65 (97)
+.++.|++.||+-+| +...+.|..|..+...+
T Consensus 3 ~~k~~~~~aGvP~~p~~~~~v~s~~ea~~~~~~ 35 (214)
T d1ulza3 3 RSKEVMKKAGVPVVPGSDGVLKSLEEAKALARE 35 (214)
T ss_dssp HHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCcCCCCCCHHHHHHHHHH
Confidence 456788999998644 34678999999886555
No 10
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=29.07 E-value=12 Score=22.68 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=30.3
Q ss_pred HHHHHHHcCCC-------CC-CCcCCCCCHHHHHHHHHHhhcCCCC-CC--Cc
Q 034347 35 LEKFLRQQGLK-------GN-SYRLLFGDLKENSIELKEAKARPLS-LD--DN 76 (97)
Q Consensus 35 l~~~lr~QGI~-------Gp-p~~~l~Gn~~e~~~~~~~a~s~~~~-~s--hd 76 (97)
..++|+++||. +| .-.+|+|...=+..++.-...+|++ +| +|
T Consensus 37 ~~~rL~~~~I~y~iq~v~~~~kvNlFFG~~~ci~~ir~~~~~rpL~~lt~EED 89 (111)
T d2guka1 37 AEERLRSRQIPYFAQPTPNTERTNLFFGCKECMEAIRLFVSGRSLNSLTPEED 89 (111)
T ss_dssp HHHHHHHTTCCEEEECCTTSSEEEEEEECHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred HHHHHhhCCCCeEEEEcCCCCeEEEEeCCHHHHHHHHHHHcCCchhhCChHHH
Confidence 34789999993 34 3568999988887777666777876 54 55
No 11
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=27.22 E-value=6.6 Score=26.51 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHhhcCCCCC
Q 034347 53 FGDLKENSIELKEAKARPLSL 73 (97)
Q Consensus 53 ~Gn~~e~~~~~~~a~s~~~~~ 73 (97)
+|+..|++++.++++.+.|.+
T Consensus 74 ~Gt~~dlk~lv~~~h~~gi~V 94 (400)
T d1eh9a3 74 YGGPEGFRKLVDEAHKKGLGV 94 (400)
T ss_dssp TCCHHHHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHHHhcCCce
Confidence 599999999999999887653
No 12
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.87 E-value=15 Score=22.12 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=16.4
Q ss_pred CCccccccchHHHHHHHhcC
Q 034347 74 DDNIAIRVNPFLHKLVNDYE 93 (97)
Q Consensus 74 shdi~~rv~P~~~~w~k~YG 93 (97)
.|.+.+--+.-..+|..+||
T Consensus 184 gH~~~~~~~~~~~~wl~~~g 203 (203)
T d2r8ba1 184 GHEIRSGEIDAVRGFLAAYG 203 (203)
T ss_dssp CSSCCHHHHHHHHHHHGGGC
T ss_pred CCcCCHHHHHHHHHHHHhcC
Confidence 48877777778889999998
No 13
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Probab=24.22 E-value=8.2 Score=26.17 Aligned_cols=15 Identities=13% Similarity=-0.062 Sum_probs=12.7
Q ss_pred chHHHHHHHhcCCCC
Q 034347 82 NPFLHKLVNDYEPLM 96 (97)
Q Consensus 82 ~P~~~~w~k~YGk~~ 96 (97)
.+++++|.++||.+|
T Consensus 21 ~~~~~~~~~kyg~v~ 35 (385)
T d1n97a_ 21 LAVLLAWGRAHPRLF 35 (385)
T ss_dssp HHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHCCCEE
Confidence 468999999999765
No 14
>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=23.68 E-value=73 Score=19.25 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=33.8
Q ss_pred hHHHHHHHHHcCCCCCCCcCCC---CCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034347 32 PKKLEKFLRQQGLKGNSYRLLF---GDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 32 P~rl~~~lr~QGI~Gpp~~~l~---Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
|..+++.|++.|+.-+--.++. ||.+=+.....+- .++.| -+++-.+-..+|||+-
T Consensus 45 ~~~~~~~l~~~gl~~~di~~~v~Hqgg~~Ild~v~~~L-----~L~~~----~~~~s~~vl~~yGN~S 103 (154)
T d1bi5a2 45 TKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKL-----ALKPE----KMNATREVLSEYGNMS 103 (154)
T ss_dssp HHHHHHHHGGGTCCCTTSSEEEECCSSHHHHHHHHHHH-----TCCGG----GGHHHHHHHHHHCBCG
T ss_pred HHHHHHHHHHcCCCccccceEeeccccHHHHHHHHHHh-----CCCHH----HHHHhHHHHHhcCCCC
Confidence 5678889999999877666554 8876555543332 22222 2234445566788763
No 15
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=22.37 E-value=17 Score=21.72 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=10.7
Q ss_pred HHHcCCCCCCCcCCCCC
Q 034347 39 LRQQGLKGNSYRLLFGD 55 (97)
Q Consensus 39 lr~QGI~Gpp~~~l~Gn 55 (97)
-++.||+|.| .|+++|
T Consensus 114 a~~lGv~GTP-t~~~~n 129 (150)
T d1t3ba1 114 GIQFGVRGTP-SIVTST 129 (150)
T ss_dssp HHHHTCCSSC-EEECTT
T ss_pred HHhcCcCCCC-EEEEcC
Confidence 4456999998 445544
Done!