BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034351
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HXP|A Chain A, Nucleotide Transferase
pdb|1HXP|B Chain B, Nucleotide Transferase
Length = 348
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 19 AALVKSVMDQKPMAGPFDRCPSCNGTGRVTC 49
AAL+ D P RC S GT RV C
Sbjct: 80 AALMSDTPDAPESHDPLMRCQSARGTSRVIC 110
>pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
Length = 348
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 19 AALVKSVMDQKPMAGPFDRCPSCNGTGRVTC 49
AAL+ D P RC S GT RV C
Sbjct: 80 AALMSDTPDAPESHDPLMRCQSARGTSRVIC 110
>pdb|2YCH|A Chain A, Pilm-Piln Type Iv Pilus Biogenesis Complex
Length = 377
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 9 VATGLSVLAGAALVKSVMDQKPMAGPF 35
VA L L GA LV V+D KP AG +
Sbjct: 153 VAGVLEALRGAGLVPVVLDVKPFAGLY 179
>pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUP|B Chain B, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUP|C Chain C, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUP|D Chain D, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUQ|A Chain A, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
pdb|1GUQ|B Chain B, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
pdb|1GUQ|C Chain C, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
pdb|1GUQ|D Chain D, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
Length = 348
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 19 AALVKSVMDQKPMAGPFDRCPSCNGTGRVTC 49
AAL+ D P RC S GT RV C
Sbjct: 80 AALMSDTPDAPESHDPLMRCQSARGTSRVIC 110
>pdb|1VSG|A Chain A, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
pdb|1VSG|B Chain B, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
Length = 364
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 57 GDVGCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRPS 97
G GC SG GGT G P +QLS +P RP+
Sbjct: 119 GTSGCMM-DTSGTNTVTKAGGTIGGVPCKLQLSPIQPKRPA 158
>pdb|3EJ3|B Chain B, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ3|D Chain D, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ3|F Chain F, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ3|H Chain H, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ3|J Chain J, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ3|L Chain L, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ7|B Chain B, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ7|D Chain D, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ7|F Chain F, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ7|H Chain H, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ7|J Chain J, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ7|L Chain L, Structural And Mechanistic Analysis Of Trans-3-
Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ9|B Chain B, Structural And Mechanistic Analysis Of
Trans-3-Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ9|D Chain D, Structural And Mechanistic Analysis Of
Trans-3-Chloroacrylic Acid Dehalogenase Activity
pdb|3EJ9|F Chain F, Structural And Mechanistic Analysis Of
Trans-3-Chloroacrylic Acid Dehalogenase Activity
Length = 70
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 3 PFVLTQVATGLSVLAGAALVKSVMD 27
PF+ +ATGLSV L++ V+D
Sbjct: 1 PFIECHIATGLSVARKQQLIRDVID 25
>pdb|1S0Y|B Chain B, The Structure Of Trans-3-Chloroacrylic Acid
Dehalogenase, Covalently Inactivated By The
Mechanism-Based Inhibitor 3- Bromopropiolate At 2.3
Angstrom Resolution
pdb|1S0Y|D Chain D, The Structure Of Trans-3-Chloroacrylic Acid
Dehalogenase, Covalently Inactivated By The
Mechanism-Based Inhibitor 3- Bromopropiolate At 2.3
Angstrom Resolution
pdb|1S0Y|F Chain F, The Structure Of Trans-3-Chloroacrylic Acid
Dehalogenase, Covalently Inactivated By The
Mechanism-Based Inhibitor 3- Bromopropiolate At 2.3
Angstrom Resolution
pdb|1S0Y|H Chain H, The Structure Of Trans-3-Chloroacrylic Acid
Dehalogenase, Covalently Inactivated By The
Mechanism-Based Inhibitor 3- Bromopropiolate At 2.3
Angstrom Resolution
pdb|1S0Y|J Chain J, The Structure Of Trans-3-Chloroacrylic Acid
Dehalogenase, Covalently Inactivated By The
Mechanism-Based Inhibitor 3- Bromopropiolate At 2.3
Angstrom Resolution
pdb|1S0Y|L Chain L, The Structure Of Trans-3-Chloroacrylic Acid
Dehalogenase, Covalently Inactivated By The
Mechanism-Based Inhibitor 3- Bromopropiolate At 2.3
Angstrom Resolution
Length = 71
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 3 PFVLTQVATGLSVLAGAALVKSVMD 27
PF+ +ATGLSV L++ V+D
Sbjct: 2 PFIECHIATGLSVARKQQLIRDVID 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,131,605
Number of Sequences: 62578
Number of extensions: 121936
Number of successful extensions: 333
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 19
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)