Query 034351
Match_columns 97
No_of_seqs 147 out of 558
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:31:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 99.1 5.4E-11 1.2E-15 83.4 2.5 78 6-83 9-100 (111)
2 COG0484 DnaJ DnaJ-class molecu 99.0 1.5E-10 3.3E-15 94.6 3.7 54 35-88 142-219 (371)
3 KOG2813 Predicted molecular ch 98.8 1.3E-09 2.8E-14 89.1 1.7 27 28-54 180-207 (406)
4 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.7 1E-08 2.2E-13 64.7 2.1 42 38-79 1-66 (66)
5 PRK14279 chaperone protein Dna 98.7 3.4E-08 7.4E-13 80.2 5.3 59 35-93 173-251 (392)
6 PRK14285 chaperone protein Dna 98.6 4E-08 8.6E-13 79.0 5.2 59 35-93 146-224 (365)
7 PRK14286 chaperone protein Dna 98.6 4.1E-08 8.9E-13 79.1 5.1 59 35-93 150-228 (372)
8 PRK14298 chaperone protein Dna 98.6 3.3E-08 7.1E-13 79.9 4.4 59 35-93 141-223 (377)
9 PRK14296 chaperone protein Dna 98.6 4.8E-08 1.1E-12 78.8 5.2 59 35-93 149-231 (372)
10 PRK14282 chaperone protein Dna 98.6 5.8E-08 1.2E-12 78.0 5.5 59 35-93 152-234 (369)
11 PRK14284 chaperone protein Dna 98.6 4.5E-08 9.8E-13 79.3 4.4 60 34-93 157-236 (391)
12 PRK14278 chaperone protein Dna 98.6 5.6E-08 1.2E-12 78.5 4.9 59 35-93 139-221 (378)
13 PRK14280 chaperone protein Dna 98.6 5.9E-08 1.3E-12 78.2 5.0 59 35-93 143-225 (376)
14 PRK14301 chaperone protein Dna 98.6 6.2E-08 1.4E-12 78.1 4.8 59 35-93 144-222 (373)
15 PRK14300 chaperone protein Dna 98.6 7.3E-08 1.6E-12 77.6 5.2 59 35-93 145-223 (372)
16 PRK14276 chaperone protein Dna 98.6 6.9E-08 1.5E-12 77.9 5.0 59 35-93 146-228 (380)
17 PTZ00037 DnaJ_C chaperone prot 98.6 6.6E-08 1.4E-12 79.6 4.9 58 35-92 150-232 (421)
18 PRK14295 chaperone protein Dna 98.6 8.1E-08 1.8E-12 77.9 5.1 59 35-93 166-244 (389)
19 PRK10767 chaperone protein Dna 98.5 1E-07 2.3E-12 76.4 5.1 57 35-91 142-218 (371)
20 PRK14288 chaperone protein Dna 98.5 1.1E-07 2.5E-12 76.5 5.1 59 35-93 140-217 (369)
21 PRK14277 chaperone protein Dna 98.5 9.6E-08 2.1E-12 77.3 4.6 59 35-93 155-237 (386)
22 PRK14290 chaperone protein Dna 98.5 1.2E-07 2.6E-12 76.1 5.1 59 35-93 149-230 (365)
23 PRK14291 chaperone protein Dna 98.5 1.3E-07 2.8E-12 76.4 5.3 59 35-93 156-233 (382)
24 TIGR02349 DnaJ_bact chaperone 98.5 1.3E-07 2.9E-12 75.1 4.9 59 35-93 143-225 (354)
25 PRK14294 chaperone protein Dna 98.5 1.3E-07 2.8E-12 76.0 4.7 59 35-93 144-222 (366)
26 PRK14281 chaperone protein Dna 98.5 1.2E-07 2.6E-12 77.0 4.5 59 35-93 163-244 (397)
27 PRK14289 chaperone protein Dna 98.5 1.4E-07 3E-12 76.1 4.9 61 34-94 153-237 (386)
28 PRK14297 chaperone protein Dna 98.5 2E-07 4.4E-12 75.1 5.3 59 35-93 148-230 (380)
29 PRK14287 chaperone protein Dna 98.4 2.5E-07 5.3E-12 74.6 4.8 59 35-93 138-220 (371)
30 PRK14283 chaperone protein Dna 98.4 3.4E-07 7.3E-12 73.8 4.6 59 35-93 146-228 (378)
31 PRK14293 chaperone protein Dna 98.4 4.2E-07 9.2E-12 73.2 4.9 59 35-93 143-225 (374)
32 PRK14292 chaperone protein Dna 98.3 8.6E-07 1.9E-11 71.1 4.4 59 35-93 139-222 (371)
33 KOG2813 Predicted molecular ch 98.0 5.2E-06 1.1E-10 68.3 4.4 48 35-82 198-269 (406)
34 COG1107 Archaea-specific RecJ- 97.8 1.5E-05 3.3E-10 69.5 3.4 48 35-82 2-81 (715)
35 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.5 0.0001 2.2E-09 46.4 2.9 34 49-82 1-54 (66)
36 KOG0712 Molecular chaperone (D 97.4 0.00014 3.1E-09 59.3 3.1 57 35-91 127-211 (337)
37 COG0484 DnaJ DnaJ-class molecu 97.3 0.00023 4.9E-09 58.7 3.4 42 28-70 153-209 (371)
38 TIGR02642 phage_xxxx uncharact 97.2 0.0005 1.1E-08 52.0 4.1 26 57-82 98-128 (186)
39 KOG2824 Glutaredoxin-related p 97.0 0.00089 1.9E-08 53.6 4.1 48 28-76 223-280 (281)
40 cd03031 GRX_GRX_like Glutaredo 96.9 0.001 2.2E-08 48.2 3.2 45 28-72 92-147 (147)
41 PLN03165 chaperone protein dna 96.9 0.001 2.2E-08 46.7 3.1 21 48-70 77-98 (111)
42 PRK14279 chaperone protein Dna 96.4 0.0023 5E-08 52.2 2.8 36 47-82 174-225 (392)
43 PRK14300 chaperone protein Dna 96.4 0.0023 4.9E-08 51.8 2.6 11 59-69 163-173 (372)
44 PRK14296 chaperone protein Dna 96.4 0.0027 5.8E-08 51.5 2.9 36 35-70 166-218 (372)
45 PRK14284 chaperone protein Dna 96.4 0.0025 5.5E-08 51.8 2.7 35 35-69 175-222 (391)
46 PRK14298 chaperone protein Dna 96.4 0.003 6.6E-08 51.3 3.1 36 35-70 158-210 (377)
47 PRK14285 chaperone protein Dna 96.3 0.0036 7.8E-08 50.6 3.0 35 35-69 163-210 (365)
48 PRK10767 chaperone protein Dna 96.2 0.0037 7.9E-08 50.3 2.9 34 36-69 160-206 (371)
49 COG1107 Archaea-specific RecJ- 96.2 0.0024 5.2E-08 56.1 1.7 30 47-76 54-87 (715)
50 PRK14301 chaperone protein Dna 96.1 0.0043 9.3E-08 50.3 2.7 36 47-82 145-196 (373)
51 PRK14282 chaperone protein Dna 96.1 0.0052 1.1E-07 49.6 3.0 36 35-70 169-221 (369)
52 PRK14289 chaperone protein Dna 96.1 0.005 1.1E-07 49.8 2.9 37 34-70 170-223 (386)
53 PRK14280 chaperone protein Dna 96.1 0.0047 1E-07 50.0 2.7 36 35-70 160-212 (376)
54 PRK14297 chaperone protein Dna 96.0 0.0051 1.1E-07 49.8 2.9 36 47-82 149-204 (380)
55 PRK14278 chaperone protein Dna 96.0 0.0044 9.6E-08 50.3 2.5 36 35-70 156-208 (378)
56 PRK14286 chaperone protein Dna 96.0 0.0042 9.1E-08 50.3 2.2 11 71-81 191-201 (372)
57 PRK14288 chaperone protein Dna 96.0 0.0052 1.1E-07 49.7 2.6 22 48-69 142-167 (369)
58 PRK14291 chaperone protein Dna 95.9 0.0048 1E-07 50.1 2.3 23 47-69 157-184 (382)
59 PRK14295 chaperone protein Dna 95.9 0.0062 1.3E-07 49.7 2.9 36 47-82 167-218 (389)
60 PRK14290 chaperone protein Dna 95.9 0.0061 1.3E-07 49.1 2.7 37 34-70 164-217 (365)
61 PTZ00037 DnaJ_C chaperone prot 95.9 0.0069 1.5E-07 50.2 3.0 36 47-82 151-205 (421)
62 PRK14276 chaperone protein Dna 95.9 0.007 1.5E-07 49.1 2.9 36 35-70 163-215 (380)
63 PRK14277 chaperone protein Dna 95.8 0.0067 1.4E-07 49.3 2.7 37 34-70 171-224 (386)
64 PRK14292 chaperone protein Dna 95.7 0.01 2.2E-07 47.8 3.1 37 34-70 156-209 (371)
65 PRK14287 chaperone protein Dna 95.6 0.0094 2E-07 48.3 2.7 36 47-82 139-194 (371)
66 PRK14294 chaperone protein Dna 95.6 0.0086 1.9E-07 48.3 2.5 22 48-69 185-208 (366)
67 TIGR02349 DnaJ_bact chaperone 95.6 0.0094 2E-07 47.5 2.5 36 35-70 160-212 (354)
68 PRK14281 chaperone protein Dna 95.5 0.0095 2.1E-07 48.6 2.5 37 34-70 178-231 (397)
69 PRK14293 chaperone protein Dna 95.3 0.011 2.5E-07 47.7 2.4 36 35-70 160-212 (374)
70 PRK14283 chaperone protein Dna 95.1 0.019 4.2E-07 46.4 3.0 37 34-70 162-215 (378)
71 KOG0715 Molecular chaperone (D 94.3 0.024 5.2E-07 44.9 1.7 60 33-92 162-241 (288)
72 TIGR02642 phage_xxxx uncharact 93.8 0.034 7.4E-07 42.1 1.6 29 35-70 99-127 (186)
73 KOG0712 Molecular chaperone (D 90.5 0.23 5E-06 40.8 2.7 43 28-70 136-198 (337)
74 cd03031 GRX_GRX_like Glutaredo 86.6 0.64 1.4E-05 33.6 2.6 19 48-68 101-120 (147)
75 PRK03564 formate dehydrogenase 85.0 1.6 3.5E-05 35.4 4.4 42 28-69 180-237 (309)
76 KOG2824 Glutaredoxin-related p 84.7 0.89 1.9E-05 36.7 2.8 36 46-83 229-276 (281)
77 COG1198 PriA Primosomal protei 84.7 0.77 1.7E-05 41.1 2.6 43 33-78 433-484 (730)
78 PF04216 FdhE: Protein involve 81.9 1.1 2.4E-05 34.8 2.3 47 32-78 169-247 (290)
79 TIGR00630 uvra excinuclease AB 81.0 0.83 1.8E-05 41.7 1.4 30 59-88 737-779 (924)
80 PF07092 DUF1356: Protein of u 80.0 0.9 1.9E-05 35.8 1.1 14 57-70 37-50 (238)
81 PRK00349 uvrA excinuclease ABC 79.4 1.6 3.4E-05 40.0 2.6 31 58-88 738-781 (943)
82 TIGR00595 priA primosomal prot 77.5 1.7 3.7E-05 36.6 2.2 43 34-78 212-262 (505)
83 COG3058 FdhE Uncharacterized p 70.8 2.4 5.2E-05 34.6 1.4 62 8-69 150-236 (308)
84 TIGR01562 FdhE formate dehydro 70.5 9.4 0.0002 30.9 4.7 34 34-67 183-233 (305)
85 PRK14873 primosome assembly pr 69.4 3.6 7.7E-05 36.3 2.3 43 33-78 381-431 (665)
86 COG0178 UvrA Excinuclease ATPa 69.4 4.3 9.2E-05 37.5 2.8 32 58-89 730-774 (935)
87 PRK05580 primosome assembly pr 68.1 3.8 8.2E-05 35.8 2.1 44 33-78 379-430 (679)
88 PF07092 DUF1356: Protein of u 66.9 3 6.6E-05 32.9 1.2 25 58-82 27-51 (238)
89 PRK04023 DNA polymerase II lar 65.2 6.6 0.00014 37.0 3.2 48 34-81 625-675 (1121)
90 PF14445 Prok-RING_2: Prokaryo 64.0 0.48 1E-05 29.9 -3.0 43 30-77 2-49 (57)
91 TIGR00595 priA primosomal prot 63.5 6.4 0.00014 33.2 2.6 36 33-68 220-263 (505)
92 PRK14714 DNA polymerase II lar 63.2 6.6 0.00014 37.6 2.8 47 35-81 667-721 (1337)
93 PRK00635 excinuclease ABC subu 63.2 3.2 7E-05 40.7 0.9 24 59-82 1608-1643(1809)
94 COG0178 UvrA Excinuclease ATPa 60.3 4.8 0.0001 37.2 1.4 23 33-55 728-763 (935)
95 TIGR03655 anti_R_Lar restricti 58.3 9.3 0.0002 22.8 2.0 10 71-80 28-37 (53)
96 PRK05580 primosome assembly pr 57.4 8.7 0.00019 33.6 2.4 35 33-67 388-430 (679)
97 PF07295 DUF1451: Protein of u 51.1 13 0.00029 26.9 2.2 28 42-69 108-141 (146)
98 TIGR00630 uvra excinuclease AB 50.7 7.9 0.00017 35.5 1.1 12 35-46 736-747 (924)
99 PF03833 PolC_DP2: DNA polymer 48.2 6 0.00013 36.5 0.0 47 35-81 655-704 (900)
100 PF12273 RCR: Chitin synthesis 45.7 25 0.00053 24.3 2.8 24 4-27 5-28 (130)
101 PRK03564 formate dehydrogenase 42.7 61 0.0013 26.4 5.0 67 11-82 154-239 (309)
102 PRK14559 putative protein seri 41.9 24 0.00052 31.3 2.7 42 36-78 2-50 (645)
103 PF03589 Antiterm: Antitermina 41.6 13 0.00028 25.1 0.8 12 71-82 34-45 (95)
104 PF13719 zinc_ribbon_5: zinc-r 41.5 21 0.00046 19.9 1.6 6 48-53 4-10 (37)
105 TIGR02098 MJ0042_CXXC MJ0042 f 40.2 25 0.00055 19.1 1.8 6 48-53 4-10 (38)
106 PRK00635 excinuclease ABC subu 38.7 16 0.00035 36.1 1.3 13 34-46 1606-1618(1809)
107 PF10571 UPF0547: Uncharacteri 38.3 18 0.00039 19.1 0.9 8 58-65 14-21 (26)
108 PRK00349 uvrA excinuclease ABC 38.1 16 0.00035 33.7 1.1 12 35-46 738-749 (943)
109 TIGR00757 RNaseEG ribonuclease 37.8 17 0.00038 30.3 1.2 13 58-70 390-402 (414)
110 PRK14873 primosome assembly pr 36.9 25 0.00055 31.1 2.1 34 34-68 391-432 (665)
111 PF00098 zf-CCHC: Zinc knuckle 36.6 24 0.00053 17.0 1.2 11 60-70 2-12 (18)
112 PF01102 Glycophorin_A: Glycop 35.2 49 0.0011 23.5 3.0 25 3-27 68-92 (122)
113 PRK12380 hydrogenase nickel in 34.6 45 0.00097 22.9 2.7 8 71-78 88-95 (113)
114 PRK06921 hypothetical protein; 34.2 27 0.00058 27.0 1.7 20 28-47 25-44 (266)
115 PF15616 TerY-C: TerY-C metal 34.0 39 0.00084 24.4 2.3 35 35-69 77-116 (131)
116 PRK11032 hypothetical protein; 33.2 36 0.00077 25.3 2.1 28 42-69 120-153 (160)
117 PF13453 zf-TFIIB: Transcripti 32.9 32 0.00068 19.3 1.4 7 71-77 21-27 (41)
118 PRK00420 hypothetical protein; 32.8 33 0.00072 24.1 1.8 9 57-65 39-47 (112)
119 COG2165 PulG Type II secretory 31.9 44 0.00095 21.7 2.2 19 6-24 15-33 (149)
120 PRK00398 rpoP DNA-directed RNA 31.3 33 0.00071 19.6 1.3 7 59-65 22-28 (46)
121 COG1198 PriA Primosomal protei 31.0 40 0.00087 30.5 2.4 33 35-67 444-484 (730)
122 PF14353 CpXC: CpXC protein 30.7 44 0.00094 22.7 2.1 14 57-70 37-50 (128)
123 PF13901 DUF4206: Domain of un 29.6 23 0.00049 26.5 0.6 33 35-68 142-182 (202)
124 PRK05978 hypothetical protein; 28.1 31 0.00068 25.3 1.1 8 58-65 52-59 (148)
125 PF01155 HypA: Hydrogenase exp 26.6 58 0.0013 22.2 2.1 9 71-79 88-96 (113)
126 PF14205 Cys_rich_KTR: Cystein 24.7 1.2E+02 0.0026 19.0 3.1 19 71-89 30-48 (55)
127 PRK06835 DNA replication prote 24.7 46 0.001 26.8 1.6 21 33-53 96-119 (329)
128 PF12387 Peptidase_C74: Pestiv 24.6 44 0.00095 25.8 1.3 26 47-72 163-190 (200)
129 PF09862 DUF2089: Protein of u 24.6 57 0.0012 23.0 1.8 16 61-76 1-19 (113)
130 PRK11712 ribonuclease G; Provi 24.4 36 0.00078 29.2 0.9 13 58-70 402-414 (489)
131 PF14990 DUF4516: Domain of un 24.3 92 0.002 18.9 2.5 22 5-26 11-32 (47)
132 PRK04023 DNA polymerase II lar 24.3 59 0.0013 31.0 2.3 32 47-79 627-661 (1121)
133 PF11023 DUF2614: Protein of u 23.3 1.1E+02 0.0024 21.8 3.1 11 32-42 66-76 (114)
134 PF04438 zf-HIT: HIT zinc fing 23.2 44 0.00096 18.1 0.9 17 60-76 4-20 (30)
135 PF12553 DUF3742: Protein of u 23.1 78 0.0017 19.5 2.0 15 11-25 4-18 (54)
136 COG2888 Predicted Zn-ribbon RN 22.9 33 0.00071 22.0 0.3 28 48-77 29-58 (61)
137 PF08792 A2L_zn_ribbon: A2L zi 22.5 56 0.0012 18.1 1.2 9 37-45 5-13 (33)
138 TIGR00100 hypA hydrogenase nic 22.0 1.1E+02 0.0023 21.0 2.7 8 71-78 88-95 (115)
139 PF04550 Phage_holin_2: Phage 21.6 62 0.0014 22.1 1.5 15 10-24 42-56 (89)
140 PRK14890 putative Zn-ribbon RN 21.2 44 0.00096 21.2 0.7 18 59-76 37-55 (59)
141 COG2322 Predicted membrane pro 21.1 96 0.0021 23.7 2.6 21 5-25 50-70 (177)
142 KOG4623 Uncharacterized conser 20.6 46 0.00099 29.6 0.8 20 46-65 28-54 (611)
143 TIGR01710 typeII_sec_gspG gene 20.6 1.1E+02 0.0023 21.2 2.6 18 6-23 8-25 (134)
144 TIGR02538 type_IV_pilB type IV 20.5 63 0.0014 27.7 1.6 8 35-42 453-460 (564)
145 PF05129 Elf1: Transcription e 20.5 53 0.0012 21.5 1.0 11 65-75 42-52 (81)
146 PF07282 OrfB_Zn_ribbon: Putat 20.4 73 0.0016 19.2 1.5 7 35-41 28-34 (69)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.08 E-value=5.4e-11 Score=83.36 Aligned_cols=78 Identities=23% Similarity=0.518 Sum_probs=59.6
Q ss_pred hhhHHhhhHHHHHHHHHhhhh---CCccCCCCCCCCCCCcCCcccccc-cCcccC----------CcccCCCCCCCeeee
Q 034351 6 LTQVATGLSVLAGAALVKSVM---DQKPMAGPFDRCPSCNGTGRVTCM-CTRWSD----------GDVGCRTCAGSGRMA 71 (97)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~---~~~P~s~~~~~C~~C~GsG~~~C~-C~Gs~~----------~~~~C~~C~G~Gk~~ 71 (97)
++-.++.|+++||+-+--+-. +..+.......|..|+|+|..+|+ |+|++. ...+|+.|+|+|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~ 88 (111)
T PLN03165 9 VAISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLT 88 (111)
T ss_pred hhhhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceee
Confidence 344466777777776544422 233444558899999999999999 999731 267999999999999
Q ss_pred CCCCCccceeee
Q 034351 72 CRSCGGTGTGRP 83 (97)
Q Consensus 72 C~~C~G~G~~r~ 83 (97)
|+.|+|+|++..
T Consensus 89 C~~C~G~G~~~~ 100 (111)
T PLN03165 89 CTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCEEEee
Confidence 999999999873
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.5e-10 Score=94.60 Aligned_cols=54 Identities=31% Similarity=0.830 Sum_probs=45.7
Q ss_pred CCCCCCCcCCc------ccccc-cCcccC-----------CcccCCCCCCCeee---eCCCCCccceee---eEEEEE
Q 034351 35 FDRCPSCNGTG------RVTCM-CTRWSD-----------GDVGCRTCAGSGRM---ACRSCGGTGTGR---PLPVQL 88 (97)
Q Consensus 35 ~~~C~~C~GsG------~~~C~-C~Gs~~-----------~~~~C~~C~G~Gk~---~C~~C~G~G~~r---~v~v~I 88 (97)
...|+.|+|+| ..+|+ |+|+++ ..++|++|+|+|++ +|.+|+|+|+++ .++|+|
T Consensus 142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~I 219 (371)
T COG0484 142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNI 219 (371)
T ss_pred eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEEC
Confidence 78999999997 47999 999742 36899999999998 999999999987 455544
No 3
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-09 Score=89.06 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=25.8
Q ss_pred CccCCCCCCCCCCCcCCcccccc-cCcc
Q 034351 28 QKPMAGPFDRCPSCNGTGRVTCM-CTRW 54 (97)
Q Consensus 28 ~~P~s~~~~~C~~C~GsG~~~C~-C~Gs 54 (97)
++||+...+.|+.|+|.|...|+ |+|+
T Consensus 180 ~vphs~~v~~ch~c~gRG~~vc~gc~g~ 207 (406)
T KOG2813|consen 180 VVPHSMIVTFCHACLGRGAMVCHGCSGS 207 (406)
T ss_pred eccchHhhhhhhcccCCCceeccCcCCC
Confidence 89999999999999999999999 9986
No 4
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.68 E-value=1e-08 Score=64.73 Aligned_cols=42 Identities=43% Similarity=1.165 Sum_probs=32.2
Q ss_pred CCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee----eCCCCCccc
Q 034351 38 CPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM----ACRSCGGTG 79 (97)
Q Consensus 38 C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~----~C~~C~G~G 79 (97)
|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|++ +|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 789999994 7799 999631 37899999999987 799999987
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.66 E-value=3.4e-08 Score=80.16 Aligned_cols=59 Identities=25% Similarity=0.671 Sum_probs=48.1
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|++ +|..|+|.|+++ ..+++|.+..+
T Consensus 173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G 251 (392)
T PRK14279 173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPG 251 (392)
T ss_pred cccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCCC
Confidence 678999999994 6799 999732 36899999999987 999999999997 45555555544
No 6
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.64 E-value=4e-08 Score=79.04 Aligned_cols=59 Identities=27% Similarity=0.650 Sum_probs=48.0
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
...|+.|+|+|. ..|+ |+|++. ...+|+.|+|+|++ +|..|+|+|+++ ..+++|.+..+
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G 224 (365)
T PRK14285 146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAG 224 (365)
T ss_pred cccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCC
Confidence 678999999994 6799 999742 36799999999987 999999999987 45566655544
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.64 E-value=4.1e-08 Score=79.15 Aligned_cols=59 Identities=31% Similarity=0.824 Sum_probs=47.6
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|+. +|+.|+|.|+++ ..++.|.+..+
T Consensus 150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G 228 (372)
T PRK14286 150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPG 228 (372)
T ss_pred cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCC
Confidence 678999999994 6799 999741 36799999999987 999999999997 34555555443
No 8
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.63 E-value=3.3e-08 Score=79.92 Aligned_cols=59 Identities=34% Similarity=0.798 Sum_probs=47.3
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|+. +|+.|+|+|+++ ..+++|.|
T Consensus 141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 220 (377)
T PRK14298 141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNV 220 (377)
T ss_pred eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecC
Confidence 678999999994 6799 999741 25799999999987 999999999987 44555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 221 ppG 223 (377)
T PRK14298 221 PAG 223 (377)
T ss_pred CCC
Confidence 443
No 9
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.63 E-value=4.8e-08 Score=78.82 Aligned_cols=59 Identities=24% Similarity=0.756 Sum_probs=46.9
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|..|+|+|. .+|+ |+|++. ...+|+.|+|+|++ +|+.|+|+|+++ ..++.|.+
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 228 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNI 228 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEE
Confidence 678999999994 5799 999742 24699999999987 899999999986 44555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
.++
T Consensus 229 p~G 231 (372)
T PRK14296 229 PKG 231 (372)
T ss_pred CCC
Confidence 444
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.62 E-value=5.8e-08 Score=78.02 Aligned_cols=59 Identities=34% Similarity=0.916 Sum_probs=47.4
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|+. +|..|+|.|+++ ..++.|.+
T Consensus 152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 231 (369)
T PRK14282 152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKI 231 (369)
T ss_pred cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEe
Confidence 678999999994 6799 999731 25799999999987 999999999987 35555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
.++
T Consensus 232 p~G 234 (369)
T PRK14282 232 PAG 234 (369)
T ss_pred CCC
Confidence 544
No 11
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.60 E-value=4.5e-08 Score=79.26 Aligned_cols=60 Identities=27% Similarity=0.722 Sum_probs=47.7
Q ss_pred CCCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351 34 PFDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 34 ~~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
+...|+.|+|+|. .+|+ |+|++. ...+|+.|+|.|+. +|..|+|.|+++ ..+|+|.|..+
T Consensus 157 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G 236 (391)
T PRK14284 157 GYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAG 236 (391)
T ss_pred eeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCC
Confidence 3678999999994 6799 999742 35799999999987 999999999986 44555555443
No 12
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.60 E-value=5.6e-08 Score=78.51 Aligned_cols=59 Identities=31% Similarity=0.727 Sum_probs=47.3
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|++ +|+.|+|.|++. ..++.|.+
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 218 (378)
T PRK14278 139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKI 218 (378)
T ss_pred eccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEE
Confidence 678999999994 6799 999731 25799999999987 999999999987 45555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 219 p~G 221 (378)
T PRK14278 219 PAG 221 (378)
T ss_pred CCC
Confidence 444
No 13
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.60 E-value=5.9e-08 Score=78.22 Aligned_cols=59 Identities=27% Similarity=0.722 Sum_probs=47.2
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|+. +|+.|+|+|+++ ..++.|.+
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~I 222 (376)
T PRK14280 143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKI 222 (376)
T ss_pred eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEe
Confidence 678999999993 6799 999731 25699999999987 899999999987 44555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 223 p~G 225 (376)
T PRK14280 223 PAG 225 (376)
T ss_pred CCC
Confidence 444
No 14
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.59 E-value=6.2e-08 Score=78.11 Aligned_cols=59 Identities=29% Similarity=0.696 Sum_probs=47.3
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|+. +|+.|+|.|+++ ..++.|.+..+
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G 222 (373)
T PRK14301 144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAG 222 (373)
T ss_pred cccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCC
Confidence 678999999994 6799 999742 36899999999987 999999999996 34555555444
No 15
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.59 E-value=7.3e-08 Score=77.59 Aligned_cols=59 Identities=25% Similarity=0.733 Sum_probs=48.2
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|.|+. +|..|+|.|++. ..+++|.+..+
T Consensus 145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G 223 (372)
T PRK14300 145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAG 223 (372)
T ss_pred ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCC
Confidence 678999999993 6799 999742 35699999999987 999999999996 55666666544
No 16
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.58 E-value=6.9e-08 Score=77.94 Aligned_cols=59 Identities=34% Similarity=0.796 Sum_probs=47.0
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|++ +|..|+|+|+++ ..+++|.+
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~I 225 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKI 225 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEe
Confidence 678999999994 6799 999731 25799999999987 999999999986 44555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 226 p~G 228 (380)
T PRK14276 226 PAG 228 (380)
T ss_pred CCC
Confidence 443
No 17
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.58 E-value=6.6e-08 Score=79.64 Aligned_cols=58 Identities=26% Similarity=0.770 Sum_probs=46.1
Q ss_pred CCCCCCCcCCcc-----cccc-cCcccC-------------CcccCCCCCCCeee-----eCCCCCccceee-eEEEEEE
Q 034351 35 FDRCPSCNGTGR-----VTCM-CTRWSD-------------GDVGCRTCAGSGRM-----ACRSCGGTGTGR-PLPVQLS 89 (97)
Q Consensus 35 ~~~C~~C~GsG~-----~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~-----~C~~C~G~G~~r-~v~v~I~ 89 (97)
...|+.|+|+|. .+|. |+|++. ...+|+.|+|+|++ +|..|+|.|+++ ..++.|.
T Consensus 150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~ 229 (421)
T PTZ00037 150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVN 229 (421)
T ss_pred cccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEe
Confidence 678999999994 6799 999742 25699999999986 799999999997 4445554
Q ss_pred eeC
Q 034351 90 VRR 92 (97)
Q Consensus 90 ~~~ 92 (97)
|.+
T Consensus 230 Ip~ 232 (421)
T PTZ00037 230 IDK 232 (421)
T ss_pred eCC
Confidence 443
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.57 E-value=8.1e-08 Score=77.94 Aligned_cols=59 Identities=29% Similarity=0.731 Sum_probs=47.3
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|++ +|..|+|.|+++ ..++.|.+..+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G 244 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAG 244 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCC
Confidence 678999999994 6799 999742 35799999999987 899999999986 44555555444
No 19
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.55 E-value=1e-07 Score=76.37 Aligned_cols=57 Identities=28% Similarity=0.767 Sum_probs=45.8
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEee
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVR 91 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~ 91 (97)
...|+.|+|+|. ..|+ |+|++. ...+|+.|+|.|+. +|+.|+|+|+++ ..++.|.+.
T Consensus 142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 218 (371)
T PRK10767 142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIP 218 (371)
T ss_pred cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecC
Confidence 678999999994 5799 999742 35689999999987 899999999997 344444443
No 20
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.54 E-value=1.1e-07 Score=76.50 Aligned_cols=59 Identities=27% Similarity=0.626 Sum_probs=47.2
Q ss_pred CCCCCCCcCCcc-----cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351 35 FDRCPSCNGTGR-----VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 35 ~~~C~~C~GsG~-----~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|+. +|..|+|.|+++ ..++.|.+.++
T Consensus 140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G 217 (369)
T PRK14288 140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEG 217 (369)
T ss_pred eccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCC
Confidence 568999999994 6799 999742 35799999999987 999999999987 45555555544
No 21
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.54 E-value=9.6e-08 Score=77.25 Aligned_cols=59 Identities=34% Similarity=0.875 Sum_probs=47.1
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|+. +|..|+|.|++. ..+++|.+
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 234 (386)
T PRK14277 155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNI 234 (386)
T ss_pred eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEec
Confidence 678999999994 6799 999731 24699999999987 899999999986 44555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 235 p~G 237 (386)
T PRK14277 235 PAG 237 (386)
T ss_pred CCC
Confidence 544
No 22
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.53 E-value=1.2e-07 Score=76.08 Aligned_cols=59 Identities=37% Similarity=0.844 Sum_probs=47.0
Q ss_pred CCCCCCCcCCcc-----cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEee
Q 034351 35 FDRCPSCNGTGR-----VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVR 91 (97)
Q Consensus 35 ~~~C~~C~GsG~-----~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~ 91 (97)
...|+.|+|+|. ..|+ |+|++. ...+|+.|+|.|+. +|+.|+|+|+++ ..+|.|.|.
T Consensus 149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 228 (365)
T PRK14290 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIP 228 (365)
T ss_pred cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEEC
Confidence 578999999995 6799 999742 14699999999987 999999999997 455555554
Q ss_pred CC
Q 034351 92 RP 93 (97)
Q Consensus 92 ~~ 93 (97)
++
T Consensus 229 ~G 230 (365)
T PRK14290 229 KG 230 (365)
T ss_pred CC
Confidence 43
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.53 E-value=1.3e-07 Score=76.41 Aligned_cols=59 Identities=27% Similarity=0.682 Sum_probs=47.2
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee--eCCCCCccceee-eEEEEEEeeCC
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM--ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~--~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
...|..|+|+|. .+|+ |+|++. ...+|+.|+|+|.+ +|..|+|.|+++ ..++.|.|.++
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G 233 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPG 233 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCC
Confidence 678999999993 6799 999731 36799999999976 999999999987 44555555443
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.51 E-value=1.3e-07 Score=75.09 Aligned_cols=59 Identities=29% Similarity=0.765 Sum_probs=47.1
Q ss_pred CCCCCCCcCCc------ccccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTG------RVTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG------~~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+| ...|. |+|++. ...+|+.|+|.|+. +|..|+|+|+++ ..++.|.+
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 222 (354)
T TIGR02349 143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKI 222 (354)
T ss_pred CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEE
Confidence 67899999999 36799 999731 25699999999987 899999999987 44555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 223 p~G 225 (354)
T TIGR02349 223 PAG 225 (354)
T ss_pred CCC
Confidence 444
No 25
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.51 E-value=1.3e-07 Score=75.97 Aligned_cols=59 Identities=31% Similarity=0.781 Sum_probs=47.5
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP 93 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~ 93 (97)
...|+.|+|+|. ..|+ |+|.+. ...+|+.|+|.|+. +|..|+|.|+++ ..+++|.+..+
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G 222 (366)
T PRK14294 144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAG 222 (366)
T ss_pred cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCC
Confidence 678999999994 5799 999742 36799999999987 999999999997 44555555444
No 26
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.51 E-value=1.2e-07 Score=77.04 Aligned_cols=59 Identities=36% Similarity=0.782 Sum_probs=47.4
Q ss_pred CCCCCCCcCCcc-----cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEee
Q 034351 35 FDRCPSCNGTGR-----VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVR 91 (97)
Q Consensus 35 ~~~C~~C~GsG~-----~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~ 91 (97)
...|+.|+|+|. ..|. |+|.+. ...+|+.|+|+|++ +|+.|+|.|+++ ..+++|.+.
T Consensus 163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 242 (397)
T PRK14281 163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVP 242 (397)
T ss_pred eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecC
Confidence 578999999994 5799 999731 25689999999987 999999999997 456666555
Q ss_pred CC
Q 034351 92 RP 93 (97)
Q Consensus 92 ~~ 93 (97)
.+
T Consensus 243 ~G 244 (397)
T PRK14281 243 AG 244 (397)
T ss_pred CC
Confidence 44
No 27
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.51 E-value=1.4e-07 Score=76.09 Aligned_cols=61 Identities=30% Similarity=0.742 Sum_probs=48.6
Q ss_pred CCCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEE
Q 034351 34 PFDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLS 89 (97)
Q Consensus 34 ~~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~ 89 (97)
+...|+.|+|+|. ..|+ |+|++. ...+|+.|+|+|+. +|..|+|+|+++ ..+++|.
T Consensus 153 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 232 (386)
T PRK14289 153 KYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVK 232 (386)
T ss_pred eecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEE
Confidence 3689999999994 6799 999731 25689999999987 999999999997 4566666
Q ss_pred eeCCC
Q 034351 90 VRRPN 94 (97)
Q Consensus 90 ~~~~~ 94 (97)
+..+.
T Consensus 233 Ip~G~ 237 (386)
T PRK14289 233 IPAGV 237 (386)
T ss_pred eCCCC
Confidence 65543
No 28
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.48 E-value=2e-07 Score=75.12 Aligned_cols=59 Identities=34% Similarity=0.805 Sum_probs=46.8
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|.|+. +|..|+|.|+++ ..+++|.+
T Consensus 148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~I 227 (380)
T PRK14297 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNV 227 (380)
T ss_pred eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEe
Confidence 678999999994 6799 999731 36799999999987 899999999875 44555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 228 p~G 230 (380)
T PRK14297 228 PAG 230 (380)
T ss_pred CCC
Confidence 443
No 29
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.44 E-value=2.5e-07 Score=74.63 Aligned_cols=59 Identities=31% Similarity=0.792 Sum_probs=46.6
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|+|++ +|..|+|.|++. ..+++|.+
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 217 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKV 217 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEE
Confidence 578999999993 6799 999731 24799999999987 899999999986 34555555
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 218 p~G 220 (371)
T PRK14287 218 PAG 220 (371)
T ss_pred CCc
Confidence 444
No 30
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.40 E-value=3.4e-07 Score=73.81 Aligned_cols=59 Identities=29% Similarity=0.765 Sum_probs=47.6
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. ..|+ |+|++. ...+|+.|+|+|+. +|..|+|+|.+. ..+++|.+
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 225 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKI 225 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEE
Confidence 578999999984 5799 999731 25689999999987 999999999987 45666666
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 226 ppG 228 (378)
T PRK14283 226 PAG 228 (378)
T ss_pred CCC
Confidence 544
No 31
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.39 E-value=4.2e-07 Score=73.16 Aligned_cols=59 Identities=29% Similarity=0.834 Sum_probs=47.1
Q ss_pred CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351 35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV 90 (97)
Q Consensus 35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~ 90 (97)
...|+.|+|+|. ..|. |+|++. ...+|..|+|.|+. +|..|+|.|++. ..++.|.+
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 222 (374)
T PRK14293 143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINI 222 (374)
T ss_pred cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEe
Confidence 678999999994 5699 999742 24689999999987 999999999987 44556665
Q ss_pred eCC
Q 034351 91 RRP 93 (97)
Q Consensus 91 ~~~ 93 (97)
..+
T Consensus 223 ppG 225 (374)
T PRK14293 223 PAG 225 (374)
T ss_pred CCC
Confidence 544
No 32
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=8.6e-07 Score=71.12 Aligned_cols=59 Identities=29% Similarity=0.715 Sum_probs=46.1
Q ss_pred CCCCCCCcCCcc-------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEE
Q 034351 35 FDRCPSCNGTGR-------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLS 89 (97)
Q Consensus 35 ~~~C~~C~GsG~-------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~ 89 (97)
...|+.|+|+|. .+|. |+|++. ...+|+.|+|.|+. +|..|+|.|++. ..++.|.
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 218 (371)
T PRK14292 139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVK 218 (371)
T ss_pred eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEE
Confidence 678999999993 5799 999731 24689999999987 999999999986 3445555
Q ss_pred eeCC
Q 034351 90 VRRP 93 (97)
Q Consensus 90 ~~~~ 93 (97)
+..+
T Consensus 219 Ip~G 222 (371)
T PRK14292 219 LPRG 222 (371)
T ss_pred ECCC
Confidence 4443
No 33
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.2e-06 Score=68.28 Aligned_cols=48 Identities=40% Similarity=0.924 Sum_probs=36.1
Q ss_pred CCCCCCCcCCc--------ccccc-cCcc---------------cCCcccCCCCCCCeeeeCCCCCccceee
Q 034351 35 FDRCPSCNGTG--------RVTCM-CTRW---------------SDGDVGCRTCAGSGRMACRSCGGTGTGR 82 (97)
Q Consensus 35 ~~~C~~C~GsG--------~~~C~-C~Gs---------------~~~~~~C~~C~G~Gk~~C~~C~G~G~~r 82 (97)
...|+.|+|+| ...|. |-|- +.+..+|++|+|.|+++|.+|+|.|...
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgsll 269 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGSLL 269 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCcccee
Confidence 78899999999 56777 7772 1156777777777777777777777776
No 34
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.81 E-value=1.5e-05 Score=69.47 Aligned_cols=48 Identities=35% Similarity=0.945 Sum_probs=40.7
Q ss_pred CCCCCCCcCCcc-----cccc-cCcccC----------------------CcccCCCCCCCeee----eCCCCCccceee
Q 034351 35 FDRCPSCNGTGR-----VTCM-CTRWSD----------------------GDVGCRTCAGSGRM----ACRSCGGTGTGR 82 (97)
Q Consensus 35 ~~~C~~C~GsG~-----~~C~-C~Gs~~----------------------~~~~C~~C~G~Gk~----~C~~C~G~G~~r 82 (97)
.+.|+.|+|+|. ..|+ |+|++. +..+|+.|.|.|.+ .|+.|.|+|.+-
T Consensus 2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 2 IKKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred CccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 468999999994 6799 999731 24699999999998 999999999886
No 35
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.50 E-value=0.0001 Score=46.37 Aligned_cols=34 Identities=38% Similarity=0.889 Sum_probs=24.4
Q ss_pred cc-cCcccC----CcccCCCCCCCeee---------------eCCCCCccceee
Q 034351 49 CM-CTRWSD----GDVGCRTCAGSGRM---------------ACRSCGGTGTGR 82 (97)
Q Consensus 49 C~-C~Gs~~----~~~~C~~C~G~Gk~---------------~C~~C~G~G~~r 82 (97)
|+ |+|++. ...+|+.|+|+|++ .|+.|+|+|.+.
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 78 998742 47899999999974 799999999873
No 36
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00014 Score=59.26 Aligned_cols=57 Identities=30% Similarity=0.709 Sum_probs=46.1
Q ss_pred CCCCCCCcCCcc-----cccc-cCccc--------------CCcccCCCCCCCeee-----eCCCCCccceee---eEEE
Q 034351 35 FDRCPSCNGTGR-----VTCM-CTRWS--------------DGDVGCRTCAGSGRM-----ACRSCGGTGTGR---PLPV 86 (97)
Q Consensus 35 ~~~C~~C~GsG~-----~~C~-C~Gs~--------------~~~~~C~~C~G~Gk~-----~C~~C~G~G~~r---~v~v 86 (97)
...|+.|+|+|. ..|. |.|++ +.+..|..|+|+|.. +|+.|.|+++++ -+.|
T Consensus 127 ~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v 206 (337)
T KOG0712|consen 127 NFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEV 206 (337)
T ss_pred CccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeec
Confidence 678999999993 5699 99962 147899999999997 999999999998 5555
Q ss_pred EEEee
Q 034351 87 QLSVR 91 (97)
Q Consensus 87 ~I~~~ 91 (97)
+|+..
T Consensus 207 ~V~~g 211 (337)
T KOG0712|consen 207 HVEPG 211 (337)
T ss_pred cccCC
Confidence 55443
No 37
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00023 Score=58.72 Aligned_cols=42 Identities=38% Similarity=0.848 Sum_probs=34.6
Q ss_pred CccCCCCCCCCCCCcCCcc-------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 28 QKPMAGPFDRCPSCNGTGR-------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 28 ~~P~s~~~~~C~~C~GsG~-------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
.+|.+ ..++|+.|+|+|. .+|+ |+|+++ ...+|++|+|.|++
T Consensus 153 ak~gt-~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v 209 (371)
T COG0484 153 AKPGT-DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRV 209 (371)
T ss_pred CCCCC-CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeE
Confidence 45555 4789999999992 6799 999864 47899999999984
No 38
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.19 E-value=0.0005 Score=51.96 Aligned_cols=26 Identities=38% Similarity=0.971 Sum_probs=23.2
Q ss_pred CcccCCCCCCCeee-----eCCCCCccceee
Q 034351 57 GDVGCRTCAGSGRM-----ACRSCGGTGTGR 82 (97)
Q Consensus 57 ~~~~C~~C~G~Gk~-----~C~~C~G~G~~r 82 (97)
...+|+.|+|+|++ +|+.|+|+|+++
T Consensus 98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFR 128 (186)
T ss_pred cCCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence 36899999999987 499999999998
No 39
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00089 Score=53.64 Aligned_cols=48 Identities=29% Similarity=0.689 Sum_probs=41.1
Q ss_pred CccCCCCCCCCCCCcCCcccccc-cCccc-------C--CcccCCCCCCCeeeeCCCCC
Q 034351 28 QKPMAGPFDRCPSCNGTGRVTCM-CTRWS-------D--GDVGCRTCAGSGRMACRSCG 76 (97)
Q Consensus 28 ~~P~s~~~~~C~~C~GsG~~~C~-C~Gs~-------~--~~~~C~~C~G~Gk~~C~~C~ 76 (97)
..| ......|+.|.|.+...|. |||+. + ...+|+.|+-.|-++|+.|.
T Consensus 223 ~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 223 GIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred cCC-CCCCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCccC
Confidence 566 5556899999999999999 99972 1 46899999999999999996
No 40
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.88 E-value=0.001 Score=48.19 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=32.0
Q ss_pred CccCCCCCCCCCCCcCCcccccc-cCcccC----------CcccCCCCCCCeeeeC
Q 034351 28 QKPMAGPFDRCPSCNGTGRVTCM-CTRWSD----------GDVGCRTCAGSGRMAC 72 (97)
Q Consensus 28 ~~P~s~~~~~C~~C~GsG~~~C~-C~Gs~~----------~~~~C~~C~G~Gk~~C 72 (97)
..|.......|..|.|.+.+.|. |+|+.. ...+|+.|+-.|.++|
T Consensus 92 ~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 92 GIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred hcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 44666667889999999999999 999721 1345666655555544
No 41
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.88 E-value=0.001 Score=46.73 Aligned_cols=21 Identities=38% Similarity=0.947 Sum_probs=10.7
Q ss_pred ccc-cCcccCCcccCCCCCCCeee
Q 034351 48 TCM-CTRWSDGDVGCRTCAGSGRM 70 (97)
Q Consensus 48 ~C~-C~Gs~~~~~~C~~C~G~Gk~ 70 (97)
.|+ |+|++ ...|..|.|.|.+
T Consensus 77 ~C~~C~G~G--k~~C~~C~G~G~~ 98 (111)
T PLN03165 77 KCINCDGAG--SLTCTTCQGSGIQ 98 (111)
T ss_pred ECCCCCCcc--eeeCCCCCCCEEE
Confidence 455 55552 2345555555543
No 42
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.45 E-value=0.0023 Score=52.18 Aligned_cols=36 Identities=36% Similarity=0.795 Sum_probs=28.5
Q ss_pred cccc-cCcccC----CcccCCCCCCCeee-----------eCCCCCccceee
Q 034351 47 VTCM-CTRWSD----GDVGCRTCAGSGRM-----------ACRSCGGTGTGR 82 (97)
Q Consensus 47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~-----------~C~~C~G~G~~r 82 (97)
..|+ |+|++. ...+|+.|+|+|.+ .|+.|+|+|.+.
T Consensus 174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i 225 (392)
T PRK14279 174 APCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII 225 (392)
T ss_pred ccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe
Confidence 6799 998742 35789999999864 799999999875
No 43
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.42 E-value=0.0023 Score=51.78 Aligned_cols=11 Identities=36% Similarity=1.057 Sum_probs=5.6
Q ss_pred ccCCCCCCCee
Q 034351 59 VGCRTCAGSGR 69 (97)
Q Consensus 59 ~~C~~C~G~Gk 69 (97)
.+|+.|+|+|+
T Consensus 163 ~~C~~C~G~G~ 173 (372)
T PRK14300 163 TTCDACSGVGA 173 (372)
T ss_pred ccCCCccCeEE
Confidence 44555555553
No 44
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.40 E-value=0.0027 Score=51.49 Aligned_cols=36 Identities=31% Similarity=0.846 Sum_probs=30.0
Q ss_pred CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
...|+.|+|+|. .+|+ |+|++. ....|+.|+|.|.+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v 218 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKY 218 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEE
Confidence 578999999994 3799 999854 46789999999964
No 45
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.38 E-value=0.0025 Score=51.80 Aligned_cols=35 Identities=34% Similarity=0.816 Sum_probs=21.0
Q ss_pred CCCCCCCcCCcc-----------cccc-cCcccC-CcccCCCCCCCee
Q 034351 35 FDRCPSCNGTGR-----------VTCM-CTRWSD-GDVGCRTCAGSGR 69 (97)
Q Consensus 35 ~~~C~~C~GsG~-----------~~C~-C~Gs~~-~~~~C~~C~G~Gk 69 (97)
...|+.|+|+|. .+|+ |+|++. ...+|+.|+|.|.
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 222 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGR 222 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcce
Confidence 456666666664 3566 666643 3455666666665
No 46
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.37 E-value=0.003 Score=51.27 Aligned_cols=36 Identities=39% Similarity=1.031 Sum_probs=30.2
Q ss_pred CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
...|+.|+|+|. .+|+ |+|++. ....|+.|+|.|.+
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 210 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKV 210 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEE
Confidence 578999999994 4699 999864 46789999999974
No 47
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.26 E-value=0.0036 Score=50.56 Aligned_cols=35 Identities=37% Similarity=0.836 Sum_probs=18.8
Q ss_pred CCCCCCCcCCcc-----------cccc-cCcccC-CcccCCCCCCCee
Q 034351 35 FDRCPSCNGTGR-----------VTCM-CTRWSD-GDVGCRTCAGSGR 69 (97)
Q Consensus 35 ~~~C~~C~GsG~-----------~~C~-C~Gs~~-~~~~C~~C~G~Gk 69 (97)
...|+.|+|+|. .+|+ |+|++. ...+|..|+|.|.
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 210 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGS 210 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCE
Confidence 345666666652 2466 666532 2445666666664
No 48
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.25 E-value=0.0037 Score=50.32 Aligned_cols=34 Identities=41% Similarity=1.058 Sum_probs=19.6
Q ss_pred CCCCCCcCCccc-----------ccc-cCcccC-CcccCCCCCCCee
Q 034351 36 DRCPSCNGTGRV-----------TCM-CTRWSD-GDVGCRTCAGSGR 69 (97)
Q Consensus 36 ~~C~~C~GsG~~-----------~C~-C~Gs~~-~~~~C~~C~G~Gk 69 (97)
..|+.|+|+|.+ +|+ |+|++. ....|..|+|.|.
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 206 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGR 206 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCce
Confidence 456666666642 366 666532 2455666666665
No 49
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.0024 Score=56.09 Aligned_cols=30 Identities=30% Similarity=0.877 Sum_probs=20.1
Q ss_pred cccc-cCcccC--CcccCCCCCCCeee-eCCCCC
Q 034351 47 VTCM-CTRWSD--GDVGCRTCAGSGRM-ACRSCG 76 (97)
Q Consensus 47 ~~C~-C~Gs~~--~~~~C~~C~G~Gk~-~C~~C~ 76 (97)
..|+ |+|++. ...+|+.|+|+|++ .|..|+
T Consensus 54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG 87 (715)
T COG1107 54 IPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICG 87 (715)
T ss_pred CCCCeeccceeEEEEeecccCCCceeEEeecccc
Confidence 4677 777643 46778888888876 555553
No 50
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.11 E-value=0.0043 Score=50.26 Aligned_cols=36 Identities=39% Similarity=0.845 Sum_probs=26.9
Q ss_pred cccc-cCcccC----CcccCCCCCCCeee-----------eCCCCCccceee
Q 034351 47 VTCM-CTRWSD----GDVGCRTCAGSGRM-----------ACRSCGGTGTGR 82 (97)
Q Consensus 47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~-----------~C~~C~G~G~~r 82 (97)
..|. |+|++. ....|+.|+|+|++ +|+.|+|.|.+.
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 196 (373)
T PRK14301 145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI 196 (373)
T ss_pred ccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence 5688 888742 24678888888863 788888888764
No 51
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.08 E-value=0.0052 Score=49.59 Aligned_cols=36 Identities=44% Similarity=1.020 Sum_probs=29.8
Q ss_pred CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
...|+.|+|+|. .+|+ |+|++. ....|..|+|.|.+
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 221 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRI 221 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeE
Confidence 678999999994 3699 999854 46789999999963
No 52
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.07 E-value=0.005 Score=49.85 Aligned_cols=37 Identities=32% Similarity=0.863 Sum_probs=30.6
Q ss_pred CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
....|+.|+|+|. ..|+ |+|++. ....|..|+|.|.+
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 223 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV 223 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEE
Confidence 3688999999995 3699 999854 46789999999974
No 53
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.07 E-value=0.0047 Score=50.03 Aligned_cols=36 Identities=33% Similarity=0.854 Sum_probs=30.0
Q ss_pred CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
...|+.|+|+|. .+|+ |+|++. ....|+.|+|.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKV 212 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEE
Confidence 578999999984 3699 999864 36789999999974
No 54
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.05 E-value=0.0051 Score=49.80 Aligned_cols=36 Identities=31% Similarity=0.867 Sum_probs=28.7
Q ss_pred cccc-cCcccC----CcccCCCCCCCeee---------------eCCCCCccceee
Q 034351 47 VTCM-CTRWSD----GDVGCRTCAGSGRM---------------ACRSCGGTGTGR 82 (97)
Q Consensus 47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~---------------~C~~C~G~G~~r 82 (97)
..|. |+|++. ...+|+.|+|+|++ +|+.|+|+|.+.
T Consensus 149 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 204 (380)
T PRK14297 149 ENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI 204 (380)
T ss_pred ccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence 6799 999742 35789999999853 699999999875
No 55
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0044 Score=50.27 Aligned_cols=36 Identities=33% Similarity=0.786 Sum_probs=29.8
Q ss_pred CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
...|+.|+|+|. .+|+ |+|++. ....|+.|+|.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeE
Confidence 578999999994 4699 999854 35789999999974
No 56
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.02 E-value=0.0042 Score=50.30 Aligned_cols=11 Identities=45% Similarity=1.081 Sum_probs=5.2
Q ss_pred eCCCCCcccee
Q 034351 71 ACRSCGGTGTG 81 (97)
Q Consensus 71 ~C~~C~G~G~~ 81 (97)
+|..|+|+|.+
T Consensus 191 ~C~~C~G~G~~ 201 (372)
T PRK14286 191 TCPTCRGKGTV 201 (372)
T ss_pred eCCCCCceeeE
Confidence 34555544443
No 57
>PRK14288 chaperone protein DnaJ; Provisional
Probab=95.99 E-value=0.0052 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.764 Sum_probs=10.4
Q ss_pred ccc-cCcccC---CcccCCCCCCCee
Q 034351 48 TCM-CTRWSD---GDVGCRTCAGSGR 69 (97)
Q Consensus 48 ~C~-C~Gs~~---~~~~C~~C~G~Gk 69 (97)
.|. |+|++. ...+|+.|+|+|.
T Consensus 142 ~C~~C~G~G~~~~~~~~C~~C~G~G~ 167 (369)
T PRK14288 142 VCESCDGTGAKDKALETCKQCNGQGQ 167 (369)
T ss_pred cCCCCCCcccCCCCCcCCCCCCCCcE
Confidence 455 555421 2345555555553
No 58
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.94 E-value=0.0048 Score=50.06 Aligned_cols=23 Identities=43% Similarity=0.894 Sum_probs=11.1
Q ss_pred cccc-cCcccC----CcccCCCCCCCee
Q 034351 47 VTCM-CTRWSD----GDVGCRTCAGSGR 69 (97)
Q Consensus 47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk 69 (97)
..|. |+|++. ....|+.|+|+|.
T Consensus 157 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 184 (382)
T PRK14291 157 VPCEACGGTGYDPGSGEKVCPTCGGSGE 184 (382)
T ss_pred ccCCCCccccCCCCCCCccCCCCCCceE
Confidence 4555 555421 2345555555553
No 59
>PRK14295 chaperone protein DnaJ; Provisional
Probab=95.94 E-value=0.0062 Score=49.66 Aligned_cols=36 Identities=31% Similarity=0.766 Sum_probs=28.0
Q ss_pred cccc-cCcccC----CcccCCCCCCCeee-----------eCCCCCccceee
Q 034351 47 VTCM-CTRWSD----GDVGCRTCAGSGRM-----------ACRSCGGTGTGR 82 (97)
Q Consensus 47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~-----------~C~~C~G~G~~r 82 (97)
..|. |+|++. ...+|+.|+|+|.+ +|+.|+|+|.+.
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 218 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA 218 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe
Confidence 5698 998742 35789999999863 799999999764
No 60
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.90 E-value=0.0061 Score=49.12 Aligned_cols=37 Identities=35% Similarity=0.935 Sum_probs=30.7
Q ss_pred CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
....|+.|+|+|. .+|+ |+|.+. ....|+.|+|.|.+
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 217 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTV 217 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeE
Confidence 3678999999994 4799 999854 46789999999984
No 61
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=95.89 E-value=0.0069 Score=50.22 Aligned_cols=36 Identities=36% Similarity=0.831 Sum_probs=29.3
Q ss_pred cccc-cCcccC---CcccCCCCCCCee---------------eeCCCCCccceee
Q 034351 47 VTCM-CTRWSD---GDVGCRTCAGSGR---------------MACRSCGGTGTGR 82 (97)
Q Consensus 47 ~~C~-C~Gs~~---~~~~C~~C~G~Gk---------------~~C~~C~G~G~~r 82 (97)
..|. |+|++. ...+|+.|+|+|. ..|+.|+|+|.+.
T Consensus 151 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i 205 (421)
T PTZ00037 151 VICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKII 205 (421)
T ss_pred ccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceec
Confidence 6799 999742 3578999999994 2899999999874
No 62
>PRK14276 chaperone protein DnaJ; Provisional
Probab=95.86 E-value=0.007 Score=49.07 Aligned_cols=36 Identities=36% Similarity=0.764 Sum_probs=30.0
Q ss_pred CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
...|+.|+|+|. .+|+ |+|++. ...+|..|+|.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~ 215 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHE 215 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEE
Confidence 578999999984 3699 999864 46789999999974
No 63
>PRK14277 chaperone protein DnaJ; Provisional
Probab=95.85 E-value=0.0067 Score=49.29 Aligned_cols=37 Identities=38% Similarity=0.838 Sum_probs=30.5
Q ss_pred CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
....|+.|+|+|. .+|+ |+|++. ....|..|+|.|.+
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 224 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRI 224 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEE
Confidence 3678999999984 3699 999854 46789999999974
No 64
>PRK14292 chaperone protein DnaJ; Provisional
Probab=95.68 E-value=0.01 Score=47.79 Aligned_cols=37 Identities=35% Similarity=0.855 Sum_probs=30.7
Q ss_pred CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
....|..|+|+|. .+|+ |+|++. ....|..|.|.|.+
T Consensus 156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 209 (371)
T PRK14292 156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRT 209 (371)
T ss_pred CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEE
Confidence 4688999999994 3699 999854 46889999999964
No 65
>PRK14287 chaperone protein DnaJ; Provisional
Probab=95.61 E-value=0.0094 Score=48.28 Aligned_cols=36 Identities=36% Similarity=0.788 Sum_probs=27.5
Q ss_pred cccc-cCcccC----CcccCCCCCCCeee---------------eCCCCCccceee
Q 034351 47 VTCM-CTRWSD----GDVGCRTCAGSGRM---------------ACRSCGGTGTGR 82 (97)
Q Consensus 47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~---------------~C~~C~G~G~~r 82 (97)
..|. |+|++. ...+|+.|+|+|.+ .|+.|.|+|.+.
T Consensus 139 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK14287 139 ETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII 194 (371)
T ss_pred ccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence 5698 998742 35679999999853 699999999764
No 66
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.60 E-value=0.0086 Score=48.26 Aligned_cols=22 Identities=41% Similarity=0.868 Sum_probs=9.7
Q ss_pred ccc-cCcccC-CcccCCCCCCCee
Q 034351 48 TCM-CTRWSD-GDVGCRTCAGSGR 69 (97)
Q Consensus 48 ~C~-C~Gs~~-~~~~C~~C~G~Gk 69 (97)
+|+ |+|++. ....|..|+|.|.
T Consensus 185 ~C~~C~G~G~~~~~~C~~C~G~g~ 208 (366)
T PRK14294 185 TCPRCRGMGKVIVSPCKTCHGQGR 208 (366)
T ss_pred eCCCCCCcCeecCcCCCCCCCceE
Confidence 355 555432 2334555555443
No 67
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=95.56 E-value=0.0094 Score=47.54 Aligned_cols=36 Identities=42% Similarity=0.919 Sum_probs=30.0
Q ss_pred CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
...|+.|+|+|. .+|+ |+|++. ....|..|+|.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEe
Confidence 678999999983 4799 999854 35689999999974
No 68
>PRK14281 chaperone protein DnaJ; Provisional
Probab=95.52 E-value=0.0095 Score=48.65 Aligned_cols=37 Identities=30% Similarity=0.786 Sum_probs=30.5
Q ss_pred CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
....|+.|+|+|. .+|+ |+|++. ....|..|+|.|.+
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 231 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIK 231 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccE
Confidence 3678999999994 3699 999854 46789999999974
No 69
>PRK14293 chaperone protein DnaJ; Provisional
Probab=95.35 E-value=0.011 Score=47.67 Aligned_cols=36 Identities=28% Similarity=0.749 Sum_probs=29.7
Q ss_pred CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
...|+.|+|+|. .+|+ |+|++. ...+|..|+|.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCccc
Confidence 578999999994 3699 999854 35689999999964
No 70
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.10 E-value=0.019 Score=46.43 Aligned_cols=37 Identities=35% Similarity=0.899 Sum_probs=30.4
Q ss_pred CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351 34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM 70 (97)
Q Consensus 34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~ 70 (97)
....|+.|+|+|. .+|+ |+|++. ...+|..|+|.|.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 215 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVV 215 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceee
Confidence 3678999999985 3599 999854 36789999999974
No 71
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.024 Score=44.90 Aligned_cols=60 Identities=25% Similarity=0.643 Sum_probs=45.6
Q ss_pred CCCCCCCCCcCCcc------cccc-cCcccC--------C-cccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeC
Q 034351 33 GPFDRCPSCNGTGR------VTCM-CTRWSD--------G-DVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRR 92 (97)
Q Consensus 33 ~~~~~C~~C~GsG~------~~C~-C~Gs~~--------~-~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~ 92 (97)
.....|..|.|.|. ..|. |.|.+. . ..+|..|+|.|.+ .|..|.|.|.++ ...|.|.+..
T Consensus 162 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~ 241 (288)
T KOG0715|consen 162 NVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPA 241 (288)
T ss_pred EeecccccccCcCcccccccccchhhhCcccccccccCCcceeecccccccceeccchHHHhhcchhhhhheeEEeecCc
Confidence 34679999999993 7799 999751 1 2369999999998 699999999776 4455554443
No 72
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=93.83 E-value=0.034 Score=42.07 Aligned_cols=29 Identities=45% Similarity=1.027 Sum_probs=16.3
Q ss_pred CCCCCCCcCCcccccccCcccCCcccCCCCCCCeee
Q 034351 35 FDRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRM 70 (97)
Q Consensus 35 ~~~C~~C~GsG~~~C~C~Gs~~~~~~C~~C~G~Gk~ 70 (97)
...|+.|+|+|... ....+|+.|+|+|++
T Consensus 99 ~~~C~~C~G~G~~i-------~~~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQ-------RRQRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEe-------cCCCCCCCCCCccEE
Confidence 44555555555321 012567888888875
No 73
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=0.23 Score=40.78 Aligned_cols=43 Identities=26% Similarity=0.727 Sum_probs=34.2
Q ss_pred CccCCCCCCCCCCCcCCc----------------ccccc-cCcccC---CcccCCCCCCCeee
Q 034351 28 QKPMAGPFDRCPSCNGTG----------------RVTCM-CTRWSD---GDVGCRTCAGSGRM 70 (97)
Q Consensus 28 ~~P~s~~~~~C~~C~GsG----------------~~~C~-C~Gs~~---~~~~C~~C~G~Gk~ 70 (97)
+-+.+....+|+.|.|+| ...|. |+|++. ....|+.|.|++.+
T Consensus 136 sGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 136 SGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVV 198 (337)
T ss_pred CCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhh
Confidence 344455677999999999 27899 999843 46799999999975
No 74
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=86.62 E-value=0.64 Score=33.61 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=9.7
Q ss_pred ccc-cCcccCCcccCCCCCCCe
Q 034351 48 TCM-CTRWSDGDVGCRTCAGSG 68 (97)
Q Consensus 48 ~C~-C~Gs~~~~~~C~~C~G~G 68 (97)
.|. |.|. .-.+|..|+|+=
T Consensus 101 ~C~~Cgg~--rfv~C~~C~Gs~ 120 (147)
T cd03031 101 VCEGCGGA--RFVPCSECNGSC 120 (147)
T ss_pred CCCCCCCc--CeEECCCCCCcc
Confidence 355 5554 235555555543
No 75
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=84.97 E-value=1.6 Score=35.39 Aligned_cols=42 Identities=29% Similarity=0.751 Sum_probs=27.0
Q ss_pred CccCCCCCCCCCCCcCC------------c--ccccc-cCc-ccCCcccCCCCCCCee
Q 034351 28 QKPMAGPFDRCPSCNGT------------G--RVTCM-CTR-WSDGDVGCRTCAGSGR 69 (97)
Q Consensus 28 ~~P~s~~~~~C~~C~Gs------------G--~~~C~-C~G-s~~~~~~C~~C~G~Gk 69 (97)
.+|.......|+.|.+. | +..|. |.- |......|+.|+-+++
T Consensus 180 ~~~~~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~ 237 (309)
T PRK03564 180 RAEYGEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSGK 237 (309)
T ss_pred ccccccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCCc
Confidence 34444457889999765 1 35688 775 4445778888876554
No 76
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=0.89 Score=36.71 Aligned_cols=36 Identities=28% Similarity=0.588 Sum_probs=27.3
Q ss_pred ccccc-cCcccCCcccCCCCCCCeee-----------eCCCCCccceeee
Q 034351 46 RVTCM-CTRWSDGDVGCRTCAGSGRM-----------ACRSCGGTGTGRP 83 (97)
Q Consensus 46 ~~~C~-C~Gs~~~~~~C~~C~G~Gk~-----------~C~~C~G~G~~r~ 83 (97)
...|. |.|. .-.+|..|+|+=++ +|..|+=.|.+|+
T Consensus 229 ~~~C~~CGg~--rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrC 276 (281)
T KOG2824|consen 229 GGVCESCGGA--RFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRC 276 (281)
T ss_pred CCcCCCcCCc--ceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeC
Confidence 35688 8886 35788888887664 7888888888874
No 77
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=84.71 E-value=0.77 Score=41.07 Aligned_cols=43 Identities=26% Similarity=0.770 Sum_probs=35.1
Q ss_pred CCCCCCCCCcCCcc-cccc-cCcc-----cCCcccCCCCCCCeee--eCCCCCcc
Q 034351 33 GPFDRCPSCNGTGR-VTCM-CTRW-----SDGDVGCRTCAGSGRM--ACRSCGGT 78 (97)
Q Consensus 33 ~~~~~C~~C~GsG~-~~C~-C~Gs-----~~~~~~C~~C~G~Gk~--~C~~C~G~ 78 (97)
.+...|.+|. + .+|+ |..+ ..+...|+.|+-...+ .|+.|++.
T Consensus 433 s~~l~C~~Cg---~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 433 APLLLCRDCG---YIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred cceeecccCC---CcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 4478899993 5 5799 9996 2368899999999766 89999988
No 78
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=81.86 E-value=1.1 Score=34.84 Aligned_cols=47 Identities=28% Similarity=0.769 Sum_probs=23.5
Q ss_pred CCCCCCCCCCcCC------------c--ccccc-cCc-ccCCcccCCCCCCCeee----------------eCCCCCcc
Q 034351 32 AGPFDRCPSCNGT------------G--RVTCM-CTR-WSDGDVGCRTCAGSGRM----------------ACRSCGGT 78 (97)
Q Consensus 32 s~~~~~C~~C~Gs------------G--~~~C~-C~G-s~~~~~~C~~C~G~Gk~----------------~C~~C~G~ 78 (97)
......|+.|.+. | +..|. |+- |......|+.|+-+... .|.+|++.
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~Y 247 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSY 247 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEE
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccch
Confidence 3346799999765 4 36798 886 45567889999877652 79999753
No 79
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.03 E-value=0.83 Score=41.67 Aligned_cols=30 Identities=33% Similarity=0.808 Sum_probs=19.7
Q ss_pred ccCCCCCCCeee------------eCCCCCccceee-eEEEEE
Q 034351 59 VGCRTCAGSGRM------------ACRSCGGTGTGR-PLPVQL 88 (97)
Q Consensus 59 ~~C~~C~G~Gk~------------~C~~C~G~G~~r-~v~v~I 88 (97)
.+|+.|.|.|.+ +|+.|+|+.+.. .+.|++
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~ 779 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKY 779 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhcee
Confidence 457777777764 788888877766 344443
No 80
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=79.98 E-value=0.9 Score=35.81 Aligned_cols=14 Identities=50% Similarity=1.170 Sum_probs=7.5
Q ss_pred CcccCCCCCCCeee
Q 034351 57 GDVGCRTCAGSGRM 70 (97)
Q Consensus 57 ~~~~C~~C~G~Gk~ 70 (97)
+..+||+|+|+|++
T Consensus 37 ~~vtCPTCqGtGrI 50 (238)
T PF07092_consen 37 DSVTCPTCQGTGRI 50 (238)
T ss_pred CCCcCCCCcCCccC
Confidence 34555555555554
No 81
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=79.37 E-value=1.6 Score=40.03 Aligned_cols=31 Identities=32% Similarity=0.775 Sum_probs=23.2
Q ss_pred cccCCCCCCCeee------------eCCCCCccceee-eEEEEE
Q 034351 58 DVGCRTCAGSGRM------------ACRSCGGTGTGR-PLPVQL 88 (97)
Q Consensus 58 ~~~C~~C~G~Gk~------------~C~~C~G~G~~r-~v~v~I 88 (97)
..+|+.|.|.|.+ .|+.|+|+.... .+.|++
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~ 781 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKY 781 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCccccccceEEEE
Confidence 3568888888864 799999988887 555554
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.55 E-value=1.7 Score=36.64 Aligned_cols=43 Identities=26% Similarity=0.657 Sum_probs=32.6
Q ss_pred CCCCCCCCcCCcccccc-cCcc-----cCCcccCCCCCCCeee--eCCCCCcc
Q 034351 34 PFDRCPSCNGTGRVTCM-CTRW-----SDGDVGCRTCAGSGRM--ACRSCGGT 78 (97)
Q Consensus 34 ~~~~C~~C~GsG~~~C~-C~Gs-----~~~~~~C~~C~G~Gk~--~C~~C~G~ 78 (97)
+...|.+|.- ..+|+ |++. ..+...|+.|+-+-.. .|+.|++.
T Consensus 212 ~~~~C~~Cg~--~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 212 KNLLCRSCGY--ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred CeeEhhhCcC--ccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 4678999941 25799 9985 2357889999988765 89999875
No 83
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=70.78 E-value=2.4 Score=34.62 Aligned_cols=62 Identities=24% Similarity=0.460 Sum_probs=31.9
Q ss_pred hHHhhhHHHHHHHHHhhhh---CCccCCCCC-----CCCCCCcCCc---------------ccccc-cCc-ccCCcccCC
Q 034351 8 QVATGLSVLAGAALVKSVM---DQKPMAGPF-----DRCPSCNGTG---------------RVTCM-CTR-WSDGDVGCR 62 (97)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~---~~~P~s~~~-----~~C~~C~GsG---------------~~~C~-C~G-s~~~~~~C~ 62 (97)
|++.-..++..++|.+--. .+.||++.. ..|+.|.+.= +..|+ |-- |......|.
T Consensus 150 ~~ss~~~~fi~AAl~lyw~q~a~~i~~~~~~e~e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~ 229 (308)
T COG3058 150 LVSSAKAPFIWAALSLYWAQMAQGIPGKARVENESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCS 229 (308)
T ss_pred hhhHhHhHHHHHHHHHHHHHHHhcCCccccccccccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhc
Confidence 3344444555555544332 366776554 4588885432 24455 543 222345667
Q ss_pred CCCCCee
Q 034351 63 TCAGSGR 69 (97)
Q Consensus 63 ~C~G~Gk 69 (97)
.|+-+++
T Consensus 230 nC~~t~~ 236 (308)
T COG3058 230 NCEQSKK 236 (308)
T ss_pred cccccCC
Confidence 7766665
No 84
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=70.55 E-value=9.4 Score=30.87 Aligned_cols=34 Identities=32% Similarity=0.897 Sum_probs=19.6
Q ss_pred CCCCCCCCcCC-------------c--ccccc-cCc-ccCCcccCCCCCCC
Q 034351 34 PFDRCPSCNGT-------------G--RVTCM-CTR-WSDGDVGCRTCAGS 67 (97)
Q Consensus 34 ~~~~C~~C~Gs-------------G--~~~C~-C~G-s~~~~~~C~~C~G~ 67 (97)
....|+.|.+. | +..|. |.- |......|+.|+-+
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 35578888543 1 24566 665 34445667777544
No 85
>PRK14873 primosome assembly protein PriA; Provisional
Probab=69.45 E-value=3.6 Score=36.29 Aligned_cols=43 Identities=30% Similarity=0.717 Sum_probs=31.9
Q ss_pred CCCCCCCCCcCCcc-cccc-cCcc-----cCCcccCCCCCCCeee-eCCCCCcc
Q 034351 33 GPFDRCPSCNGTGR-VTCM-CTRW-----SDGDVGCRTCAGSGRM-ACRSCGGT 78 (97)
Q Consensus 33 ~~~~~C~~C~GsG~-~~C~-C~Gs-----~~~~~~C~~C~G~Gk~-~C~~C~G~ 78 (97)
++...|.+|. . .+|+ |++. ..+...|+.|+-.-.- .|+.|++.
T Consensus 381 ap~l~C~~Cg---~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 381 VPSLACARCR---TPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred CCeeEhhhCc---CeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCC
Confidence 3477899994 4 6799 9995 2346789999875322 89999876
No 86
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=69.40 E-value=4.3 Score=37.53 Aligned_cols=32 Identities=31% Similarity=0.756 Sum_probs=24.4
Q ss_pred cccCCCCCCCeee------------eCCCCCccceee-eEEEEEE
Q 034351 58 DVGCRTCAGSGRM------------ACRSCGGTGTGR-PLPVQLS 89 (97)
Q Consensus 58 ~~~C~~C~G~Gk~------------~C~~C~G~G~~r-~v~v~I~ 89 (97)
..+|..|+|.|-+ +|..|+|+-+-+ .++|+..
T Consensus 730 GGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLev~yk 774 (935)
T COG0178 730 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYK 774 (935)
T ss_pred CcCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEEEEEC
Confidence 3689999998864 899999887776 6666643
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=68.13 E-value=3.8 Score=35.81 Aligned_cols=44 Identities=30% Similarity=0.721 Sum_probs=32.7
Q ss_pred CCCCCCCCCcCCcccccc-cCcc-----cCCcccCCCCCCCeee--eCCCCCcc
Q 034351 33 GPFDRCPSCNGTGRVTCM-CTRW-----SDGDVGCRTCAGSGRM--ACRSCGGT 78 (97)
Q Consensus 33 ~~~~~C~~C~GsG~~~C~-C~Gs-----~~~~~~C~~C~G~Gk~--~C~~C~G~ 78 (97)
++...|..|.- ..+|+ |++. ..+...|+.|+.+-.. .|+.|++.
T Consensus 379 ~~~~~C~~Cg~--~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 379 APFLLCRDCGW--VAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred CCceEhhhCcC--ccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 34678999941 25799 9985 2356789999988665 89999876
No 88
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=66.93 E-value=3 Score=32.87 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=19.8
Q ss_pred cccCCCCCCCeeeeCCCCCccceee
Q 034351 58 DVGCRTCAGSGRMACRSCGGTGTGR 82 (97)
Q Consensus 58 ~~~C~~C~G~Gk~~C~~C~G~G~~r 82 (97)
.-++..-.|++-+.|++|+|.|++.
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP 51 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIP 51 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCC
Confidence 4566667777778999999999986
No 89
>PRK04023 DNA polymerase II large subunit; Validated
Probab=65.16 E-value=6.6 Score=36.98 Aligned_cols=48 Identities=25% Similarity=0.571 Sum_probs=35.1
Q ss_pred CCCCCCCCcCCc-ccccc-cCcccCCcccCCCCCCCeee-eCCCCCcccee
Q 034351 34 PFDRCPSCNGTG-RVTCM-CTRWSDGDVGCRTCAGSGRM-ACRSCGGTGTG 81 (97)
Q Consensus 34 ~~~~C~~C~GsG-~~~C~-C~Gs~~~~~~C~~C~G~Gk~-~C~~C~G~G~~ 81 (97)
....|+.|.-.+ ...|+ |+........|+.|+-.... .|+.|.-.-..
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCc
Confidence 367899997665 36799 99864456789999766653 89999865443
No 90
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=64.01 E-value=0.48 Score=29.87 Aligned_cols=43 Identities=33% Similarity=0.890 Sum_probs=27.3
Q ss_pred cCCCCCCCCCCCcCCcc----cccc-cCcccCCcccCCCCCCCeeeeCCCCCc
Q 034351 30 PMAGPFDRCPSCNGTGR----VTCM-CTRWSDGDVGCRTCAGSGRMACRSCGG 77 (97)
Q Consensus 30 P~s~~~~~C~~C~GsG~----~~C~-C~Gs~~~~~~C~~C~G~Gk~~C~~C~G 77 (97)
|++-.+..|.-|+-++. ..|. |..|. |..|--.-.-.|++|.|
T Consensus 2 P~SFsry~CDLCn~~~p~~~LRQCvlCGRWa-----C~sCW~deYY~CksC~G 49 (57)
T PF14445_consen 2 PHSFSRYSCDLCNSSHPISELRQCVLCGRWA-----CNSCWQDEYYTCKSCNG 49 (57)
T ss_pred hhHHhhHhHHhhcccCcHHHHHHHhhhchhh-----hhhhhhhhHhHHHhhhc
Confidence 67777888888888884 5688 87763 44444433335555544
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.54 E-value=6.4 Score=33.25 Aligned_cols=36 Identities=25% Similarity=0.652 Sum_probs=27.2
Q ss_pred CCCCCCCCCcC-------Ccccccc-cCcccCCcccCCCCCCCe
Q 034351 33 GPFDRCPSCNG-------TGRVTCM-CTRWSDGDVGCRTCAGSG 68 (97)
Q Consensus 33 ~~~~~C~~C~G-------sG~~~C~-C~Gs~~~~~~C~~C~G~G 68 (97)
.....|+.|++ .+...|+ |+-.......||.|++.-
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSED 263 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCe
Confidence 44788999984 3357799 988755678999998763
No 92
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=63.22 E-value=6.6 Score=37.64 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=33.8
Q ss_pred CCCCCCCcCCc-ccccc-cCcccCCcccCCCCCCC------eeeeCCCCCcccee
Q 034351 35 FDRCPSCNGTG-RVTCM-CTRWSDGDVGCRTCAGS------GRMACRSCGGTGTG 81 (97)
Q Consensus 35 ~~~C~~C~GsG-~~~C~-C~Gs~~~~~~C~~C~G~------Gk~~C~~C~G~G~~ 81 (97)
...|++|.... ...|+ |.........|+.|+.. +...|+.|+-.-..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 57899998755 35899 99874334589999883 23489999865443
No 93
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=63.19 E-value=3.2 Score=40.68 Aligned_cols=24 Identities=29% Similarity=0.672 Sum_probs=15.9
Q ss_pred ccCCCCCCCeee------------eCCCCCccceee
Q 034351 59 VGCRTCAGSGRM------------ACRSCGGTGTGR 82 (97)
Q Consensus 59 ~~C~~C~G~Gk~------------~C~~C~G~G~~r 82 (97)
.+|+.|.|.|.+ +|..|+|+.+.+
T Consensus 1608 GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~ 1643 (1809)
T PRK00635 1608 GQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQP 1643 (1809)
T ss_pred CCCCCCccCceEEEecccCCCcccCCCCCCCcCCCH
Confidence 457777777753 677777776665
No 94
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=60.34 E-value=4.8 Score=37.22 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=18.3
Q ss_pred CCCCCCCCCcCCc------------ccccc-cCccc
Q 034351 33 GPFDRCPSCNGTG------------RVTCM-CTRWS 55 (97)
Q Consensus 33 ~~~~~C~~C~GsG------------~~~C~-C~Gs~ 55 (97)
..--.|+.|.|.| +++|. |+|++
T Consensus 728 vkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkR 763 (935)
T COG0178 728 VKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKR 763 (935)
T ss_pred CCCcCCccccCCceEEEEeccCCCceeeCCCcCCcc
Confidence 3347899999999 37899 99964
No 95
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=58.31 E-value=9.3 Score=22.76 Aligned_cols=10 Identities=40% Similarity=1.318 Sum_probs=5.3
Q ss_pred eCCCCCccce
Q 034351 71 ACRSCGGTGT 80 (97)
Q Consensus 71 ~C~~C~G~G~ 80 (97)
.|..|..+|.
T Consensus 28 ~C~~Cga~~~ 37 (53)
T TIGR03655 28 ECSTCGASGP 37 (53)
T ss_pred ECCCCCCCcc
Confidence 4555555544
No 96
>PRK05580 primosome assembly protein PriA; Validated
Probab=57.45 E-value=8.7 Score=33.62 Aligned_cols=35 Identities=26% Similarity=0.717 Sum_probs=26.3
Q ss_pred CCCCCCCCCcCC-------cccccc-cCcccCCcccCCCCCCC
Q 034351 33 GPFDRCPSCNGT-------GRVTCM-CTRWSDGDVGCRTCAGS 67 (97)
Q Consensus 33 ~~~~~C~~C~Gs-------G~~~C~-C~Gs~~~~~~C~~C~G~ 67 (97)
.....|++|++. +...|+ |+-.......|+.|++.
T Consensus 388 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 388 GWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred cCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 336789999865 246799 98875556789999886
No 97
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=51.08 E-value=13 Score=26.95 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=19.0
Q ss_pred cCCcccccc-cCccc-----CCcccCCCCCCCee
Q 034351 42 NGTGRVTCM-CTRWS-----DGDVGCRTCAGSGR 69 (97)
Q Consensus 42 ~GsG~~~C~-C~Gs~-----~~~~~C~~C~G~Gk 69 (97)
-|.|...|. |+-.. ..-.+||.|++..-
T Consensus 108 ~g~G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 108 VGPGTLVCENCGHEVELTHPERLPPCPKCGHTEF 141 (146)
T ss_pred ecCceEecccCCCEEEecCCCcCCCCCCCCCCee
Confidence 477788888 88752 13567888877654
No 98
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.66 E-value=7.9 Score=35.52 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=9.7
Q ss_pred CCCCCCCcCCcc
Q 034351 35 FDRCPSCNGTGR 46 (97)
Q Consensus 35 ~~~C~~C~GsG~ 46 (97)
.-.|+.|.|.|.
T Consensus 736 ~G~C~~C~G~G~ 747 (924)
T TIGR00630 736 GGRCEACQGDGV 747 (924)
T ss_pred CCCCCCCccceE
Confidence 466999999994
No 99
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=48.17 E-value=6 Score=36.51 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=0.0
Q ss_pred CCCCCCCcCCc-ccccc-cCcccCCcccCCCCCCCeee-eCCCCCcccee
Q 034351 35 FDRCPSCNGTG-RVTCM-CTRWSDGDVGCRTCAGSGRM-ACRSCGGTGTG 81 (97)
Q Consensus 35 ~~~C~~C~GsG-~~~C~-C~Gs~~~~~~C~~C~G~Gk~-~C~~C~G~G~~ 81 (97)
...|+.|.-.+ ..+|+ |.....-...|+.|+-.-.. .|+.|.-....
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVEEDECPKCGRETTS 704 (900)
T ss_dssp --------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCccccceeccccccccCccccccccccCcc
Confidence 56799997666 36798 98875456789999887654 89999876443
No 100
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=45.73 E-value=25 Score=24.29 Aligned_cols=24 Identities=17% Similarity=-0.004 Sum_probs=16.4
Q ss_pred hhhhhHHhhhHHHHHHHHHhhhhC
Q 034351 4 FVLTQVATGLSVLAGAALVKSVMD 27 (97)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (97)
|+|..++.+|-++..+++.+|+.+
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666777777777777777654
No 101
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=42.66 E-value=61 Score=26.36 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHhhh---hCCccCCCCCCCCCCCcCCcccccc-cCccc----------CC--cccCCCCCCCeee---e
Q 034351 11 TGLSVLAGAALVKSV---MDQKPMAGPFDRCPSCNGTGRVTCM-CTRWS----------DG--DVGCRTCAGSGRM---A 71 (97)
Q Consensus 11 ~~~~~~~~~~~~~~~---~~~~P~s~~~~~C~~C~GsG~~~C~-C~Gs~----------~~--~~~C~~C~G~Gk~---~ 71 (97)
+..+++..++|...- ..++|++..... |.....|+ |.+.. .+ .-.|+.|+-.=.. .
T Consensus 154 ~~~a~Fi~AALqv~wa~~a~~l~~~~~~~~-----~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~ 228 (309)
T PRK03564 154 SDKAPFIWAALSLYWAQMAQQIPGKARAEY-----GEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVK 228 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHhhCCccccccc-----ccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCcc
Confidence 334444444444221 135676665444 44568899 99851 11 4689999887654 8
Q ss_pred CCCCCccceee
Q 034351 72 CRSCGGTGTGR 82 (97)
Q Consensus 72 C~~C~G~G~~r 82 (97)
|+.|.-.+...
T Consensus 229 C~~Cg~~~~l~ 239 (309)
T PRK03564 229 CSNCEQSGKLH 239 (309)
T ss_pred CCCCCCCCcee
Confidence 99998766544
No 102
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=41.89 E-value=24 Score=31.28 Aligned_cols=42 Identities=24% Similarity=0.607 Sum_probs=26.3
Q ss_pred CCCCCCcCCc---ccccc-cCcccCCcccCCCCCCC---eeeeCCCCCcc
Q 034351 36 DRCPSCNGTG---RVTCM-CTRWSDGDVGCRTCAGS---GRMACRSCGGT 78 (97)
Q Consensus 36 ~~C~~C~GsG---~~~C~-C~Gs~~~~~~C~~C~G~---Gk~~C~~C~G~ 78 (97)
..|+.|+-.- .+.|+ |..+ .....|+.|+-. |..-|+.|+-.
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~-l~~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTS-LTHKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCC-CCCCcCCCCCCCCCcccccccccCCc
Confidence 3688886443 46788 8443 223578888765 33378888754
No 103
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=41.59 E-value=13 Score=25.15 Aligned_cols=12 Identities=50% Similarity=1.268 Sum_probs=6.4
Q ss_pred eCCCCCccceee
Q 034351 71 ACRSCGGTGTGR 82 (97)
Q Consensus 71 ~C~~C~G~G~~r 82 (97)
.|..|.|.|..+
T Consensus 34 ~c~rcgg~G~sr 45 (95)
T PF03589_consen 34 DCERCGGRGYSR 45 (95)
T ss_pred hhhhhcCCCCCC
Confidence 455555555543
No 104
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=41.55 E-value=21 Score=19.91 Aligned_cols=6 Identities=50% Similarity=1.270 Sum_probs=3.1
Q ss_pred ccc-cCc
Q 034351 48 TCM-CTR 53 (97)
Q Consensus 48 ~C~-C~G 53 (97)
+|+ |+-
T Consensus 4 ~CP~C~~ 10 (37)
T PF13719_consen 4 TCPNCQT 10 (37)
T ss_pred ECCCCCc
Confidence 455 554
No 105
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=40.16 E-value=25 Score=19.09 Aligned_cols=6 Identities=33% Similarity=1.137 Sum_probs=2.8
Q ss_pred ccc-cCc
Q 034351 48 TCM-CTR 53 (97)
Q Consensus 48 ~C~-C~G 53 (97)
+|+ |+-
T Consensus 4 ~CP~C~~ 10 (38)
T TIGR02098 4 QCPNCKT 10 (38)
T ss_pred ECCCCCC
Confidence 344 544
No 106
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=38.71 E-value=16 Score=36.13 Aligned_cols=13 Identities=31% Similarity=0.739 Sum_probs=10.5
Q ss_pred CCCCCCCCcCCcc
Q 034351 34 PFDRCPSCNGTGR 46 (97)
Q Consensus 34 ~~~~C~~C~GsG~ 46 (97)
..-.|+.|.|.|.
T Consensus 1606 ~~GrC~~C~G~G~ 1618 (1809)
T PRK00635 1606 KQGQCSDCWGLGY 1618 (1809)
T ss_pred CCCCCCCCccCce
Confidence 3567999999994
No 107
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.35 E-value=18 Score=19.14 Aligned_cols=8 Identities=25% Similarity=0.629 Sum_probs=4.4
Q ss_pred cccCCCCC
Q 034351 58 DVGCRTCA 65 (97)
Q Consensus 58 ~~~C~~C~ 65 (97)
...|+.|+
T Consensus 14 ~~~Cp~CG 21 (26)
T PF10571_consen 14 AKFCPHCG 21 (26)
T ss_pred cCcCCCCC
Confidence 45566554
No 108
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=38.07 E-value=16 Score=33.68 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=9.2
Q ss_pred CCCCCCCcCCcc
Q 034351 35 FDRCPSCNGTGR 46 (97)
Q Consensus 35 ~~~C~~C~GsG~ 46 (97)
.-.|+.|.|.|.
T Consensus 738 ~G~C~~C~G~G~ 749 (943)
T PRK00349 738 GGRCEACQGDGV 749 (943)
T ss_pred CCCCCcccccce
Confidence 456999999884
No 109
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=37.77 E-value=17 Score=30.29 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=8.7
Q ss_pred cccCCCCCCCeee
Q 034351 58 DVGCRTCAGSGRM 70 (97)
Q Consensus 58 ~~~C~~C~G~Gk~ 70 (97)
..+||.|+|+|++
T Consensus 390 ~~~Cp~C~G~G~v 402 (414)
T TIGR00757 390 GTVCPHCSGTGIV 402 (414)
T ss_pred cCCCCCCcCeeEE
Confidence 4667777777764
No 110
>PRK14873 primosome assembly protein PriA; Provisional
Probab=36.94 E-value=25 Score=31.09 Aligned_cols=34 Identities=32% Similarity=0.769 Sum_probs=24.9
Q ss_pred CCCCCCCCcCC-------cccccc-cCcccCCcccCCCCCCCe
Q 034351 34 PFDRCPSCNGT-------GRVTCM-CTRWSDGDVGCRTCAGSG 68 (97)
Q Consensus 34 ~~~~C~~C~Gs-------G~~~C~-C~Gs~~~~~~C~~C~G~G 68 (97)
....|++|++. +...|+ |+-.. ....|+.|++.-
T Consensus 391 ~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~-~p~~Cp~Cgs~~ 432 (665)
T PRK14873 391 TPARCRHCTGPLGLPSAGGTPRCRWCGRAA-PDWRCPRCGSDR 432 (665)
T ss_pred CeeECCCCCCceeEecCCCeeECCCCcCCC-cCccCCCCcCCc
Confidence 36789999853 246798 88653 467899998863
No 111
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=36.58 E-value=24 Score=16.97 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=5.4
Q ss_pred cCCCCCCCeee
Q 034351 60 GCRTCAGSGRM 70 (97)
Q Consensus 60 ~C~~C~G~Gk~ 70 (97)
.|..|+..|..
T Consensus 2 ~C~~C~~~GH~ 12 (18)
T PF00098_consen 2 KCFNCGEPGHI 12 (18)
T ss_dssp BCTTTSCSSSC
T ss_pred cCcCCCCcCcc
Confidence 35555555543
No 112
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.22 E-value=49 Score=23.49 Aligned_cols=25 Identities=4% Similarity=0.049 Sum_probs=17.8
Q ss_pred chhhhhHHhhhHHHHHHHHHhhhhC
Q 034351 3 PFVLTQVATGLSVLAGAALVKSVMD 27 (97)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (97)
-|++.+++.++.+.+-+++..|++.
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777778777777777666654
No 113
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=34.65 E-value=45 Score=22.85 Aligned_cols=8 Identities=38% Similarity=1.115 Sum_probs=3.8
Q ss_pred eCCCCCcc
Q 034351 71 ACRSCGGT 78 (97)
Q Consensus 71 ~C~~C~G~ 78 (97)
.|+.|++.
T Consensus 88 ~CP~Cgs~ 95 (113)
T PRK12380 88 QCPHCHGE 95 (113)
T ss_pred cCcCCCCC
Confidence 35555543
No 114
>PRK06921 hypothetical protein; Provisional
Probab=34.23 E-value=27 Score=27.00 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=15.6
Q ss_pred CccCCCCCCCCCCCcCCccc
Q 034351 28 QKPMAGPFDRCPSCNGTGRV 47 (97)
Q Consensus 28 ~~P~s~~~~~C~~C~GsG~~ 47 (97)
-+|...+.+.|+.|+++|..
T Consensus 25 g~~~~~~~~~Cp~C~dtG~i 44 (266)
T PRK06921 25 PEESDAERYDCPKCKDRGII 44 (266)
T ss_pred CCCCcCCCCCCCCCCCCEEE
Confidence 44666667889999999964
No 115
>PF15616 TerY-C: TerY-C metal binding domain
Probab=34.03 E-value=39 Score=24.41 Aligned_cols=35 Identities=29% Similarity=0.817 Sum_probs=20.7
Q ss_pred CCCCCCCcCC-cccccccCcc----cCCcccCCCCCCCee
Q 034351 35 FDRCPSCNGT-GRVTCMCTRW----SDGDVGCRTCAGSGR 69 (97)
Q Consensus 35 ~~~C~~C~Gs-G~~~C~C~Gs----~~~~~~C~~C~G~Gk 69 (97)
...||.|... +...|.|..- +.+..+||.|+-+|.
T Consensus 77 ~PgCP~CGn~~~fa~C~CGkl~Ci~g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 77 APGCPHCGNQYAFAVCGCGKLFCIDGEGEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCCcChhcEEEecCCCEEEeCCCCCEECCCCCCeee
Confidence 3789999665 5566656542 224556666665554
No 116
>PRK11032 hypothetical protein; Provisional
Probab=33.22 E-value=36 Score=25.27 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=18.6
Q ss_pred cCCcccccc-cCccc-----CCcccCCCCCCCee
Q 034351 42 NGTGRVTCM-CTRWS-----DGDVGCRTCAGSGR 69 (97)
Q Consensus 42 ~GsG~~~C~-C~Gs~-----~~~~~C~~C~G~Gk 69 (97)
-|.|...|. |+-.. ..-.+|+.|++.--
T Consensus 120 vg~G~LvC~~Cg~~~~~~~p~~i~pCp~C~~~~F 153 (160)
T PRK11032 120 VGLGNLVCEKCHHHLAFYTPEVLPLCPKCGHDQF 153 (160)
T ss_pred eecceEEecCCCCEEEecCCCcCCCCCCCCCCee
Confidence 466778888 87641 13567888877654
No 117
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=32.90 E-value=32 Score=19.33 Aligned_cols=7 Identities=71% Similarity=1.787 Sum_probs=2.9
Q ss_pred eCCCCCc
Q 034351 71 ACRSCGG 77 (97)
Q Consensus 71 ~C~~C~G 77 (97)
.|+.|+|
T Consensus 21 ~C~~C~G 27 (41)
T PF13453_consen 21 VCPSCGG 27 (41)
T ss_pred ECCCCCe
Confidence 3444443
No 118
>PRK00420 hypothetical protein; Validated
Probab=32.77 E-value=33 Score=24.09 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=4.3
Q ss_pred CcccCCCCC
Q 034351 57 GDVGCRTCA 65 (97)
Q Consensus 57 ~~~~C~~C~ 65 (97)
+...||.|+
T Consensus 39 g~~~Cp~Cg 47 (112)
T PRK00420 39 GEVVCPVHG 47 (112)
T ss_pred CceECCCCC
Confidence 344555554
No 119
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.94 E-value=44 Score=21.67 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=13.8
Q ss_pred hhhHHhhhHHHHHHHHHhh
Q 034351 6 LTQVATGLSVLAGAALVKS 24 (97)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (97)
|+.|+++++|++++++-..
T Consensus 15 lLVvl~Iigil~~~~~p~~ 33 (149)
T COG2165 15 LLVVLAIIGILAALALPSL 33 (149)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 5567888888888776544
No 120
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=31.26 E-value=33 Score=19.64 Aligned_cols=7 Identities=43% Similarity=1.099 Sum_probs=3.2
Q ss_pred ccCCCCC
Q 034351 59 VGCRTCA 65 (97)
Q Consensus 59 ~~C~~C~ 65 (97)
.+||.|+
T Consensus 22 ~~Cp~CG 28 (46)
T PRK00398 22 VRCPYCG 28 (46)
T ss_pred eECCCCC
Confidence 4444444
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=31.02 E-value=40 Score=30.46 Aligned_cols=33 Identities=24% Similarity=0.782 Sum_probs=27.1
Q ss_pred CCCCCCCcCC-------cccccc-cCcccCCcccCCCCCCC
Q 034351 35 FDRCPSCNGT-------GRVTCM-CTRWSDGDVGCRTCAGS 67 (97)
Q Consensus 35 ~~~C~~C~Gs-------G~~~C~-C~Gs~~~~~~C~~C~G~ 67 (97)
...|+.|... +...|+ |+-...-...||.|++.
T Consensus 444 v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 444 IAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred cccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 6789999754 458899 99876567899999998
No 122
>PF14353 CpXC: CpXC protein
Probab=30.72 E-value=44 Score=22.70 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=10.0
Q ss_pred CcccCCCCCCCeee
Q 034351 57 GDVGCRTCAGSGRM 70 (97)
Q Consensus 57 ~~~~C~~C~G~Gk~ 70 (97)
...+||.|+...+.
T Consensus 37 ~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 37 FSFTCPSCGHKFRL 50 (128)
T ss_pred CEEECCCCCCceec
Confidence 36778888877765
No 123
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=29.61 E-value=23 Score=26.52 Aligned_cols=33 Identities=27% Similarity=0.593 Sum_probs=23.6
Q ss_pred CCCCCCCcCCcccccc-cCccc-------CCcccCCCCCCCe
Q 034351 35 FDRCPSCNGTGRVTCM-CTRWS-------DGDVGCRTCAGSG 68 (97)
Q Consensus 35 ~~~C~~C~GsG~~~C~-C~Gs~-------~~~~~C~~C~G~G 68 (97)
...|+-|.+.|. .|. |+... +...+|+.|+--=
T Consensus 142 V~~C~lC~~kGf-iCe~C~~~~~IfPF~~~~~~~C~~C~~v~ 182 (202)
T PF13901_consen 142 VYSCELCQQKGF-ICEICNSDDIIFPFQIDTTVRCPKCKSVF 182 (202)
T ss_pred HHHhHHHHhCCC-CCccCCCCCCCCCCCCCCeeeCCcCcccc
Confidence 458999999985 799 99752 1456777776543
No 124
>PRK05978 hypothetical protein; Provisional
Probab=28.07 E-value=31 Score=25.27 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=4.5
Q ss_pred cccCCCCC
Q 034351 58 DVGCRTCA 65 (97)
Q Consensus 58 ~~~C~~C~ 65 (97)
...|+.|+
T Consensus 52 ~~~C~~CG 59 (148)
T PRK05978 52 VDHCAACG 59 (148)
T ss_pred CCCccccC
Confidence 45566554
No 125
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=26.64 E-value=58 Score=22.16 Aligned_cols=9 Identities=33% Similarity=1.117 Sum_probs=3.5
Q ss_pred eCCCCCccc
Q 034351 71 ACRSCGGTG 79 (97)
Q Consensus 71 ~C~~C~G~G 79 (97)
.|+.|++..
T Consensus 88 ~CP~Cgs~~ 96 (113)
T PF01155_consen 88 SCPRCGSPD 96 (113)
T ss_dssp H-SSSSSS-
T ss_pred CCcCCcCCC
Confidence 455555543
No 126
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=24.75 E-value=1.2e+02 Score=19.04 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=11.2
Q ss_pred eCCCCCccceeeeEEEEEE
Q 034351 71 ACRSCGGTGTGRPLPVQLS 89 (97)
Q Consensus 71 ~C~~C~G~G~~r~v~v~I~ 89 (97)
.|+.|.-.-.+.--..+|.
T Consensus 30 yCpKCK~EtlI~v~~~~i~ 48 (55)
T PF14205_consen 30 YCPKCKQETLIDVKQLKIT 48 (55)
T ss_pred cCCCCCceEEEEeeccEEE
Confidence 6777776666653344444
No 127
>PRK06835 DNA replication protein DnaC; Validated
Probab=24.68 E-value=46 Score=26.77 Aligned_cols=21 Identities=33% Similarity=0.774 Sum_probs=15.6
Q ss_pred CCCCCCCCCcCCcc---cccccCc
Q 034351 33 GPFDRCPSCNGTGR---VTCMCTR 53 (97)
Q Consensus 33 ~~~~~C~~C~GsG~---~~C~C~G 53 (97)
...+.|+.|+++|+ ..|.|.-
T Consensus 96 ~~~y~Cp~C~dtG~i~~~~C~C~~ 119 (329)
T PRK06835 96 EMKYTCPKCKDTGFINGKKCSCYK 119 (329)
T ss_pred CCCCCCCCCCCCCCcCCccccchh
Confidence 34678999999997 4576654
No 128
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=24.61 E-value=44 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.681 Sum_probs=17.4
Q ss_pred cccc-cCcccCCcccCCCCCCCeee-eC
Q 034351 47 VTCM-CTRWSDGDVGCRTCAGSGRM-AC 72 (97)
Q Consensus 47 ~~C~-C~Gs~~~~~~C~~C~G~Gk~-~C 72 (97)
..|. |.++.-....||.|+..|+- .|
T Consensus 163 ilCtvCe~r~w~g~~CPKCGr~G~pi~C 190 (200)
T PF12387_consen 163 ILCTVCEGREWKGGNCPKCGRHGKPITC 190 (200)
T ss_pred EEEeeeecCccCCCCCCcccCCCCCeec
Confidence 5677 77753234669999888863 44
No 129
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=24.59 E-value=57 Score=22.97 Aligned_cols=16 Identities=44% Similarity=1.147 Sum_probs=10.7
Q ss_pred CCCCCCCeee---eCCCCC
Q 034351 61 CRTCAGSGRM---ACRSCG 76 (97)
Q Consensus 61 C~~C~G~Gk~---~C~~C~ 76 (97)
||.|++.=.+ +|+.|+
T Consensus 1 CPvCg~~l~vt~l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCG 19 (113)
T ss_pred CCCCCCceEEEEEEcCCCC
Confidence 6777766555 677775
No 130
>PRK11712 ribonuclease G; Provisional
Probab=24.38 E-value=36 Score=29.22 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=9.7
Q ss_pred cccCCCCCCCeee
Q 034351 58 DVGCRTCAGSGRM 70 (97)
Q Consensus 58 ~~~C~~C~G~Gk~ 70 (97)
..+||.|+|+|++
T Consensus 402 ~~~Cp~C~G~G~v 414 (489)
T PRK11712 402 CGECPTCHGRGTV 414 (489)
T ss_pred cCCCCCCCCCCCc
Confidence 5778888888874
No 131
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=24.30 E-value=92 Score=18.91 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=17.3
Q ss_pred hhhhHHhhhHHHHHHHHHhhhh
Q 034351 5 VLTQVATGLSVLAGAALVKSVM 26 (97)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (97)
+..-+++++||+||+-.+-+-+
T Consensus 11 l~~~~~s~~sM~aGA~vVH~~y 32 (47)
T PF14990_consen 11 LKSLVASLLSMLAGASVVHNIY 32 (47)
T ss_pred HHHHHHHHHHHHhhhHHHHHHh
Confidence 3445689999999999888754
No 132
>PRK04023 DNA polymerase II large subunit; Validated
Probab=24.26 E-value=59 Score=31.00 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=18.3
Q ss_pred cccc-cCcccCCcccCCCCCCCee--eeCCCCCccc
Q 034351 47 VTCM-CTRWSDGDVGCRTCAGSGR--MACRSCGGTG 79 (97)
Q Consensus 47 ~~C~-C~Gs~~~~~~C~~C~G~Gk--~~C~~C~G~G 79 (97)
..|+ |+-.. ....|+.|+..-. ..|+.|.-..
T Consensus 627 RfCpsCG~~t-~~frCP~CG~~Te~i~fCP~CG~~~ 661 (1121)
T PRK04023 627 RKCPSCGKET-FYRRCPFCGTHTEPVYRCPRCGIEV 661 (1121)
T ss_pred ccCCCCCCcC-CcccCCCCCCCCCcceeCccccCcC
Confidence 5677 76532 3467777776522 2677775443
No 133
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.29 E-value=1.1e+02 Score=21.82 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=7.1
Q ss_pred CCCCCCCCCCc
Q 034351 32 AGPFDRCPSCN 42 (97)
Q Consensus 32 s~~~~~C~~C~ 42 (97)
.+....|+.|+
T Consensus 66 kav~V~CP~C~ 76 (114)
T PF11023_consen 66 KAVQVECPNCG 76 (114)
T ss_pred cceeeECCCCC
Confidence 34566777775
No 134
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=23.23 E-value=44 Score=18.07 Aligned_cols=17 Identities=29% Similarity=0.991 Sum_probs=8.5
Q ss_pred cCCCCCCCeeeeCCCCC
Q 034351 60 GCRTCAGSGRMACRSCG 76 (97)
Q Consensus 60 ~C~~C~G~Gk~~C~~C~ 76 (97)
.|..|+..++-+|+.|+
T Consensus 4 ~C~vC~~~~kY~Cp~C~ 20 (30)
T PF04438_consen 4 LCSVCGNPAKYRCPRCG 20 (30)
T ss_dssp EETSSSSEESEE-TTT-
T ss_pred CCccCcCCCEEECCCcC
Confidence 45556655555666654
No 135
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=23.05 E-value=78 Score=19.48 Aligned_cols=15 Identities=7% Similarity=-0.099 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHhhh
Q 034351 11 TGLSVLAGAALVKSV 25 (97)
Q Consensus 11 ~~~~~~~~~~~~~~~ 25 (97)
..+-+++++||+...
T Consensus 4 ll~f~~iaaw~~~~~ 18 (54)
T PF12553_consen 4 LLVFAAIAAWMARNP 18 (54)
T ss_pred HHHHHHHHHHHHhCC
Confidence 356678889999885
No 136
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=22.88 E-value=33 Score=22.03 Aligned_cols=28 Identities=29% Similarity=0.677 Sum_probs=14.8
Q ss_pred ccc-cCcccCCcccCCCCCCCeee-eCCCCCc
Q 034351 48 TCM-CTRWSDGDVGCRTCAGSGRM-ACRSCGG 77 (97)
Q Consensus 48 ~C~-C~Gs~~~~~~C~~C~G~Gk~-~C~~C~G 77 (97)
.|+ |.-. ...+|..|.-.|.. +|+.|.=
T Consensus 29 ~CPnCGe~--~I~Rc~~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 29 PCPNCGEV--EIYRCAKCRKLGNPYRCPKCGF 58 (61)
T ss_pred eCCCCCce--eeehhhhHHHcCCceECCCcCc
Confidence 365 5533 23455556555555 5666653
No 137
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=22.48 E-value=56 Score=18.08 Aligned_cols=9 Identities=44% Similarity=1.490 Sum_probs=3.9
Q ss_pred CCCCCcCCc
Q 034351 37 RCPSCNGTG 45 (97)
Q Consensus 37 ~C~~C~GsG 45 (97)
.|+.|++.+
T Consensus 5 ~C~~C~~~~ 13 (33)
T PF08792_consen 5 KCSKCGGNG 13 (33)
T ss_pred EcCCCCCCe
Confidence 344444444
No 138
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.02 E-value=1.1e+02 Score=21.02 Aligned_cols=8 Identities=38% Similarity=1.090 Sum_probs=3.6
Q ss_pred eCCCCCcc
Q 034351 71 ACRSCGGT 78 (97)
Q Consensus 71 ~C~~C~G~ 78 (97)
.|+.|++.
T Consensus 88 ~CP~Cgs~ 95 (115)
T TIGR00100 88 RCPKCHGI 95 (115)
T ss_pred cCcCCcCC
Confidence 34444443
No 139
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.56 E-value=62 Score=22.13 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=12.9
Q ss_pred HhhhHHHHHHHHHhh
Q 034351 10 ATGLSVLAGAALVKS 24 (97)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (97)
-+++||.||++++.+
T Consensus 42 Gs~~S~~Aga~Li~~ 56 (89)
T PF04550_consen 42 GSAVSVVAGAALIQF 56 (89)
T ss_pred hhHHHHHHHHHHhcC
Confidence 578999999999876
No 140
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=21.22 E-value=44 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.881 Sum_probs=9.2
Q ss_pred ccCCCCCCCeee-eCCCCC
Q 034351 59 VGCRTCAGSGRM-ACRSCG 76 (97)
Q Consensus 59 ~~C~~C~G~Gk~-~C~~C~ 76 (97)
.+|..|.-.+.. .|+.|.
T Consensus 37 ~RC~~CRk~~~~Y~CP~CG 55 (59)
T PRK14890 37 YRCEKCRKQSNPYTCPKCG 55 (59)
T ss_pred eechhHHhcCCceECCCCC
Confidence 445555555544 555554
No 141
>COG2322 Predicted membrane protein [Function unknown]
Probab=21.07 E-value=96 Score=23.67 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=17.8
Q ss_pred hhhhHHhhhHHHHHHHHHhhh
Q 034351 5 VLTQVATGLSVLAGAALVKSV 25 (97)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (97)
++..+.+++.+++|.+++++.
T Consensus 50 ai~~~~s~~~llag~~~Ikrg 70 (177)
T COG2322 50 AIFNSLSFIFLLAGWRLIKRG 70 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 355678999999999999986
No 142
>KOG4623 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.62 E-value=46 Score=29.56 Aligned_cols=20 Identities=25% Similarity=0.790 Sum_probs=13.4
Q ss_pred ccccc-cCccc------CCcccCCCCC
Q 034351 46 RVTCM-CTRWS------DGDVGCRTCA 65 (97)
Q Consensus 46 ~~~C~-C~Gs~------~~~~~C~~C~ 65 (97)
.++|| |+++. .+..+||.|.
T Consensus 28 ~VnCwFCnk~t~vpyq~rNswTCpsCE 54 (611)
T KOG4623|consen 28 TVNCWFCNKKTEVPYQGRNSWTCPSCE 54 (611)
T ss_pred eEEEEEecCcceeccCCCCCCcCCcHH
Confidence 46788 88851 2567788874
No 143
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=20.57 E-value=1.1e+02 Score=21.17 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=11.9
Q ss_pred hhhHHhhhHHHHHHHHHh
Q 034351 6 LTQVATGLSVLAGAALVK 23 (97)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (97)
|+.|++++++++++++..
T Consensus 8 llivlaIigil~~i~~p~ 25 (134)
T TIGR01710 8 IMVVLVILGLLAALVAPK 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445677777777766643
No 144
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=20.49 E-value=63 Score=27.73 Aligned_cols=8 Identities=25% Similarity=0.762 Sum_probs=5.1
Q ss_pred CCCCCCCc
Q 034351 35 FDRCPSCN 42 (97)
Q Consensus 35 ~~~C~~C~ 42 (97)
+..|++|+
T Consensus 453 r~lC~~C~ 460 (564)
T TIGR02538 453 RRLCSHCK 460 (564)
T ss_pred hhcccccC
Confidence 55677775
No 145
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=20.46 E-value=53 Score=21.47 Aligned_cols=11 Identities=45% Similarity=1.198 Sum_probs=7.7
Q ss_pred CCCeeeeCCCC
Q 034351 65 AGSGRMACRSC 75 (97)
Q Consensus 65 ~G~Gk~~C~~C 75 (97)
.+.|...|..|
T Consensus 42 ~~~~~~~C~~C 52 (81)
T PF05129_consen 42 EGIGILSCRVC 52 (81)
T ss_dssp TTEEEEEESSS
T ss_pred CCEEEEEecCC
Confidence 56666677777
No 146
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.37 E-value=73 Score=19.22 Aligned_cols=7 Identities=43% Similarity=1.345 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 034351 35 FDRCPSC 41 (97)
Q Consensus 35 ~~~C~~C 41 (97)
...|+.|
T Consensus 28 Sq~C~~C 34 (69)
T PF07282_consen 28 SQTCPRC 34 (69)
T ss_pred ccCccCc
Confidence 3344444
Done!