Query 034353
Match_columns 97
No_of_seqs 106 out of 436
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02290 cytokinin trans-hydro 99.4 7.4E-12 1.6E-16 99.2 11.3 80 17-96 17-97 (516)
2 PTZ00404 cytochrome P450; Prov 97.5 0.00011 2.3E-09 58.0 4.3 47 32-96 19-65 (482)
3 KOG0157 Cytochrome P450 CYP4/C 97.3 0.00075 1.6E-08 54.3 6.8 43 40-97 33-75 (497)
4 PLN02183 ferulate 5-hydroxylas 96.9 0.0015 3.3E-08 52.2 4.5 72 1-96 1-72 (516)
5 KOG0158 Cytochrome P450 CYP3/C 96.6 0.005 1.1E-07 50.5 5.9 29 34-62 23-51 (499)
6 PLN00168 Cytochrome P450; Prov 96.4 0.0041 8.9E-08 49.7 3.8 55 27-96 20-74 (519)
7 KOG0156 Cytochrome P450 CYP2 s 96.2 0.0051 1.1E-07 50.0 3.7 37 44-97 28-64 (489)
8 PLN02687 flavonoid 3'-monooxyg 96.2 0.0046 1E-07 49.4 3.1 37 43-97 35-71 (517)
9 PLN02302 ent-kaurenoic acid ox 96.1 0.024 5.2E-07 44.5 6.6 37 45-94 45-81 (490)
10 PLN03234 cytochrome P450 83B1; 95.9 0.0093 2E-07 47.2 3.8 37 43-96 29-65 (499)
11 PLN02738 carotene beta-ring hy 95.5 0.011 2.5E-07 49.2 2.8 49 31-96 104-168 (633)
12 PLN03112 cytochrome P450 famil 95.4 0.014 3.1E-07 46.4 3.1 35 44-96 34-68 (514)
13 PLN02966 cytochrome P450 83A1 95.4 0.0089 1.9E-07 47.6 1.9 37 43-96 30-66 (502)
14 PLN02774 brassinosteroid-6-oxi 95.0 0.024 5.2E-07 44.7 3.1 44 36-97 24-68 (463)
15 PLN02196 abscisic acid 8'-hydr 95.0 0.044 9.6E-07 43.2 4.6 38 42-96 35-72 (463)
16 COG3898 Uncharacterized membra 94.6 0.11 2.5E-06 42.3 6.1 50 18-67 55-111 (531)
17 PLN02394 trans-cinnamate 4-mon 94.4 0.049 1.1E-06 43.1 3.7 37 43-96 31-67 (503)
18 PLN02971 tryptophan N-hydroxyl 93.1 0.14 3.1E-06 41.4 4.2 37 44-96 59-96 (543)
19 PLN02169 fatty acid (omega-1)- 91.7 0.17 3.7E-06 40.5 3.0 24 38-61 27-50 (500)
20 PLN03195 fatty acid omega-hydr 91.6 0.48 1E-05 37.8 5.5 21 39-59 27-47 (516)
21 PLN02500 cytochrome P450 90B1 91.2 0.49 1.1E-05 37.5 5.1 41 44-97 40-80 (490)
22 PF00067 p450: Cytochrome P450 91.0 0.13 2.9E-06 38.3 1.7 36 45-96 2-37 (463)
23 PF07219 HemY_N: HemY protein 90.3 1.3 2.8E-05 28.8 5.7 64 3-66 14-85 (108)
24 PLN00110 flavonoid 3',5'-hydro 89.7 0.7 1.5E-05 37.0 4.9 46 34-97 23-68 (504)
25 PLN02655 ent-kaurene oxidase 89.7 0.21 4.5E-06 39.4 1.8 36 45-97 2-37 (466)
26 PLN03141 3-epi-6-deoxocathaste 88.4 0.41 8.9E-06 37.5 2.6 40 45-97 10-49 (452)
27 PLN02987 Cytochrome P450, fami 88.2 1.1 2.4E-05 35.8 5.0 40 45-97 33-72 (472)
28 TIGR00540 hemY_coli hemY prote 77.6 6.9 0.00015 30.5 5.5 63 3-65 39-109 (409)
29 PRK10747 putative protoheme IX 76.6 7.2 0.00016 30.4 5.3 64 2-65 38-109 (398)
30 PLN03018 homomethionine N-hydr 60.5 12 0.00027 30.4 3.7 37 22-59 21-57 (534)
31 PRK12417 secY preprotein trans 50.0 37 0.0008 27.2 4.7 28 20-47 294-321 (404)
32 PF10281 Ish1: Putative stress 48.8 40 0.00087 17.7 4.4 28 32-62 6-33 (38)
33 PTZ00200 cysteine proteinase; 44.8 25 0.00053 28.7 3.0 29 69-97 110-138 (448)
34 TIGR02920 acc_sec_Y2 accessory 42.0 66 0.0014 25.6 5.0 30 21-50 288-317 (395)
35 PF15643 Tox-PL-2: Papain fold 40.8 23 0.0005 23.4 1.9 23 32-54 25-47 (100)
36 PHA03240 envelope glycoprotein 39.5 61 0.0013 24.6 4.2 13 32-44 234-246 (258)
37 PF03115 Astro_capsid: Astrovi 36.5 12 0.00025 32.8 0.0 18 35-52 65-82 (787)
38 PF11120 DUF2636: Protein of u 36.1 81 0.0017 19.0 3.6 8 37-44 43-50 (62)
39 PF05552 TM_helix: Conserved T 34.4 88 0.0019 17.5 5.0 27 13-45 23-49 (53)
40 PTZ00203 cathepsin L protease; 33.9 29 0.00062 27.3 1.8 14 84-97 37-50 (348)
41 PF08733 PalH: PalH/RIM21; In 33.1 96 0.0021 24.4 4.6 16 32-47 318-333 (348)
42 COG3771 Predicted membrane pro 33.0 1.4E+02 0.0031 19.4 5.1 15 30-44 69-83 (97)
43 PF04995 CcmD: Heme exporter p 32.8 91 0.002 17.1 4.6 19 24-42 21-39 (46)
44 PRK01021 lpxB lipid-A-disaccha 32.6 55 0.0012 28.0 3.3 49 33-93 324-380 (608)
45 PF02684 LpxB: Lipid-A-disacch 32.3 57 0.0012 25.9 3.3 49 33-93 96-152 (373)
46 KOG0684 Cytochrome P450 [Secon 31.4 58 0.0013 27.1 3.2 14 84-97 56-69 (486)
47 PRK11677 hypothetical protein; 31.3 1.2E+02 0.0027 20.8 4.4 21 20-40 19-39 (134)
48 COG0011 Uncharacterized conser 31.2 81 0.0018 20.7 3.3 36 34-69 25-63 (100)
49 PF09336 Vps4_C: Vps4 C termin 30.8 31 0.00066 20.4 1.2 10 84-93 53-62 (62)
50 PLN02648 allene oxide synthase 29.8 45 0.00098 27.0 2.4 39 45-96 20-59 (480)
51 PF15050 SCIMP: SCIMP protein 29.7 1.7E+02 0.0036 20.2 4.7 8 38-45 33-40 (133)
52 cd06333 PBP1_ABC-type_HAAT_lik 29.0 1.6E+02 0.0034 21.3 5.0 62 34-95 203-276 (312)
53 smart00540 LEM in nuclear memb 28.6 50 0.0011 18.5 1.8 13 33-45 9-21 (44)
54 PF13276 HTH_21: HTH-like doma 28.3 63 0.0014 18.2 2.2 20 30-49 38-57 (60)
55 PF12994 DUF3878: Domain of un 27.5 54 0.0012 25.7 2.3 26 31-56 249-274 (299)
56 PF02631 RecX: RecX family; I 27.3 46 0.001 21.5 1.7 18 29-46 42-59 (121)
57 PRK08476 F0F1 ATP synthase sub 27.2 1.1E+02 0.0025 20.6 3.7 13 22-34 21-33 (141)
58 PF13167 GTP-bdg_N: GTP-bindin 26.9 63 0.0014 20.8 2.3 46 45-93 33-80 (95)
59 PF00558 Vpu: Vpu protein; In 26.9 1.1E+02 0.0024 19.4 3.3 11 19-29 20-30 (81)
60 KOG0159 Cytochrome P450 CYP11/ 26.3 35 0.00076 28.6 1.2 39 44-96 52-90 (519)
61 PF15187 Augurin: Oesophageal 26.1 88 0.0019 21.0 2.8 52 34-92 2-57 (114)
62 KOG3115 Methyltransferase-like 24.9 46 0.00099 25.2 1.4 33 63-96 23-55 (249)
63 PF13986 DUF4224: Domain of un 24.8 65 0.0014 18.0 1.8 16 30-45 15-30 (47)
64 PF13072 DUF3936: Protein of u 23.8 69 0.0015 17.6 1.7 20 46-65 6-25 (38)
65 PF06716 DUF1201: Protein of u 23.2 1.6E+02 0.0035 17.0 4.8 30 1-30 1-30 (54)
66 PTZ00219 Sec61 alpha subunit; 22.9 2.5E+02 0.0054 23.1 5.5 27 21-47 372-403 (474)
67 PRK10604 sensor protein RstB; 22.7 3.7E+02 0.008 20.8 7.5 18 26-43 158-175 (433)
68 PRK11492 hyfE hydrogenase 4 me 22.1 1.8E+02 0.0038 21.4 4.1 24 22-45 63-86 (216)
69 TIGR01571 A_thal_Cys_rich unch 21.9 2.2E+02 0.0049 18.1 4.2 20 29-48 60-80 (104)
70 PF10271 Tmp39: Putative trans 21.8 1.4E+02 0.003 24.4 3.8 22 14-35 44-65 (423)
71 COG2454 Uncharacterized conser 21.7 67 0.0015 23.9 1.8 17 33-49 147-163 (211)
72 cd00153 RalGDS_RA Ubiquitin do 21.4 98 0.0021 19.9 2.3 20 31-50 29-48 (87)
73 smart00843 Ftsk_gamma This dom 21.4 1.1E+02 0.0023 18.4 2.3 29 20-48 24-52 (63)
74 PLN02936 epsilon-ring hydroxyl 21.0 59 0.0013 25.8 1.5 38 45-96 15-53 (489)
75 PF11823 DUF3343: Protein of u 20.7 84 0.0018 18.6 1.8 13 34-46 16-28 (73)
76 PF11337 DUF3139: Protein of u 20.7 2.2E+02 0.0047 17.4 5.1 14 32-45 37-50 (85)
77 PF14291 DUF4371: Domain of un 20.5 1.7E+02 0.0036 21.3 3.7 29 37-65 72-105 (235)
78 PRK00124 hypothetical protein; 20.4 95 0.0021 21.8 2.3 18 32-49 108-127 (151)
No 1
>PLN02290 cytokinin trans-hydroxylase
Probab=99.37 E-value=7.4e-12 Score=99.19 Aligned_cols=80 Identities=20% Similarity=0.436 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCC-CCCccccccchHHHHHHHhcCCC
Q 034353 17 VLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLS-LDDNIAIRVNPFLHKLVNDYEPL 95 (97)
Q Consensus 17 ~~~~~~~~~~~~w~rP~rl~~~lr~QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~-~shdi~~rv~P~~~~w~k~YGk~ 95 (97)
+.-.+++.+..+.+.|++++++++++|++||++.+++||+.++.....++..++++ ..+|+..+..+++.+|.++||++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i 96 (516)
T PLN02290 17 LLRVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKR 96 (516)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCe
Confidence 33456788899999999999999999999999999999999998766666666665 46777778888999999999997
Q ss_pred C
Q 034353 96 M 96 (97)
Q Consensus 96 ~ 96 (97)
|
T Consensus 97 ~ 97 (516)
T PLN02290 97 F 97 (516)
T ss_pred E
Confidence 6
No 2
>PTZ00404 cytochrome P450; Provisional
Probab=97.54 E-value=0.00011 Score=57.96 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=36.0
Q ss_pred hHHHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 32 PKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 32 P~rl~~~lr~QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
+.+..+++++++|+||++..++||+.++.+ ...-++++|.++||++|
T Consensus 19 ~~~~~~~~~~~~~pgp~~~p~~G~~~~~~~------------------~~~~~~~~~~~~yG~i~ 65 (482)
T PTZ00404 19 AYKKYKKIHKNELKGPIPIPILGNLHQLGN------------------LPHRDLTKMSKKYGGIF 65 (482)
T ss_pred HHHHhhhccCCCCCCCCCCCeeccHhhhcc------------------cHHHHHHHHHHHhCCee
Confidence 445556799999999999999999876632 11237789999999876
No 3
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=97.33 E-value=0.00075 Score=54.30 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=35.1
Q ss_pred HHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 40 RQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 40 r~QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
+.++.+||++..++||..|+.++. .....++.++..+||++|.
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 75 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPL---------------EEILDFVTELLSRYGPIFK 75 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcch---------------hHHHHHHHHHHHHcCchhh
Confidence 788999999999999999997621 3455688999999997763
No 4
>PLN02183 ferulate 5-hydroxylase
Probab=96.89 E-value=0.0015 Score=52.20 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=42.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccc
Q 034353 1 MELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIR 80 (97)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~w~rP~rl~~~lr~QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~r 80 (97)
|+..+...+.+..++.++ ....++-.+|.++.+- .+-++||++..++||+.++.+ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~ppgp~~~Pl~G~l~~~~~--------------~---- 56 (516)
T PLN02183 1 MDSPLQSLLTSPSFFLIL-ISLFLFLGLISRLRRR-----LPYPPGPKGLPIIGNMLMMDQ--------------L---- 56 (516)
T ss_pred CCcHHHhhhccchHHHHH-HHHHHHHHHHhhccCC-----CCCCcCCCCCCeeccHHhcCC--------------c----
Confidence 445555544333222221 2223333446655552 356889999999999865521 1
Q ss_pred cchHHHHHHHhcCCCC
Q 034353 81 VNPFLHKLVNDYEPLM 96 (97)
Q Consensus 81 v~P~~~~w~k~YGk~~ 96 (97)
...++.+|.++||++|
T Consensus 57 ~~~~~~~~~~~yG~i~ 72 (516)
T PLN02183 57 THRGLANLAKQYGGLF 72 (516)
T ss_pred chHHHHHHHHHhCCee
Confidence 1247899999999987
No 5
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.64 E-value=0.005 Score=50.47 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCCCCCcCCCCCHHHHHHH
Q 034353 34 KLEKFLRQQGLKGNSYRLLFGDLKENSIE 62 (97)
Q Consensus 34 rl~~~lr~QGI~Gpp~~~l~Gn~~e~~~~ 62 (97)
+...+|++.||+||+|..++||++.+.+.
T Consensus 23 ~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~ 51 (499)
T KOG0158|consen 23 WTYSYWRRRGIPGPKPLPFLGNLPGMLKR 51 (499)
T ss_pred hhhhhhccCCCCCCCCCCcEecHHHHHhc
Confidence 45568888899999999999999999773
No 6
>PLN00168 Cytochrome P450; Provisional
Probab=96.36 E-value=0.0041 Score=49.73 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=38.2
Q ss_pred HHHhchHHHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 27 WVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 27 ~~w~rP~rl~~~lr~QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
.+|+.|.+..-+.+.+=.+||++..++||+.++.. + .+....++.+|.++||++|
T Consensus 20 ~~~~~~~~~~~~~~~~lpPgp~~~pl~G~l~~~~~--------------~-~~~~~~~~~~~~~~yG~i~ 74 (519)
T PLN00168 20 LLLGKHGGRGGKKGRRLPPGPPAVPLLGSLVWLTN--------------S-SADVEPLLRRLIARYGPVV 74 (519)
T ss_pred HhhhhhhccCCCCCCCCCcCCCCCcccccHHhhcc--------------c-cccHHHHHHHHHHHhCCeE
Confidence 44666776666656666779999999999865532 0 1123357899999999876
No 7
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.24 E-value=0.0051 Score=50.05 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=28.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 44 I~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
-+||++-.++||+.++... + ..=.|++|+++||++|+
T Consensus 28 PPGP~~lPiIGnl~~l~~~----------------~-~h~~~~~ls~~yGpi~t 64 (489)
T KOG0156|consen 28 PPGPPPLPIIGNLHQLGSL----------------P-PHRSFRKLSKKYGPVFT 64 (489)
T ss_pred CcCCCCCCccccHHHcCCC----------------c-hhHHHHHHHHHhCCeEE
Confidence 4699999999999887541 1 11278999999999873
No 8
>PLN02687 flavonoid 3'-monooxygenase
Probab=96.16 E-value=0.0046 Score=49.41 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=26.7
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 43 GI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
..+||++-.++||+.++.+ + ...++.+|.++||++|+
T Consensus 35 ~pPgp~~~P~iG~~~~~~~--------------~----~~~~~~~~~~~yG~i~~ 71 (517)
T PLN02687 35 LPPGPRGWPVLGNLPQLGP--------------K----PHHTMAALAKTYGPLFR 71 (517)
T ss_pred CCccCCCCCccccHHhcCC--------------c----hhHHHHHHHHHhCCeeE
Confidence 4568888888999866521 1 22478999999998873
No 9
>PLN02302 ent-kaurenoic acid oxidase
Probab=96.07 E-value=0.024 Score=44.46 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCC
Q 034353 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEP 94 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk 94 (97)
+||++-.++||+.++..... ......++.+|.++||+
T Consensus 45 Pgp~~~PilG~l~~~~~~~~-------------~~~~~~~~~~~~~kyG~ 81 (490)
T PLN02302 45 PGDLGWPVIGNMWSFLRAFK-------------SSNPDSFIASFISRYGR 81 (490)
T ss_pred CCCCCCCccccHHHHHHhcc-------------cCCcHHHHHHHHHHhCC
Confidence 67777889999987754100 01112468999999997
No 10
>PLN03234 cytochrome P450 83B1; Provisional
Probab=95.93 E-value=0.0093 Score=47.19 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=27.8
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 43 GI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
.++||++..++||+.++.+ +| ...++.+|.++||++|
T Consensus 29 ~pPgp~~~P~iG~~~~~~~-------------~~----~~~~~~~~~~~yG~~~ 65 (499)
T PLN03234 29 LPPGPKGLPIIGNLHQMEK-------------FN----PQHFLFRLSKLYGPIF 65 (499)
T ss_pred CCcCCCCCCeeccHHhcCC-------------CC----ccHHHHHHHHHcCCeE
Confidence 4889998899999876622 11 2247899999999987
No 11
>PLN02738 carotene beta-ring hydroxylase
Probab=95.47 E-value=0.011 Score=49.16 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=34.4
Q ss_pred chHHHHHHHHHcCCCCCCCc-------CCC---------CCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCC
Q 034353 31 RPKKLEKFLRQQGLKGNSYR-------LLF---------GDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEP 94 (97)
Q Consensus 31 rP~rl~~~lr~QGI~Gpp~~-------~l~---------Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk 94 (97)
.|..++..|+++||+||... |.+ ||+..+.. ..-+-.+++|.++||+
T Consensus 104 ~~~~~~~~~~~~~~pgp~laa~t~~ye~y~~~~~~~~~~G~l~~i~~-----------------g~~~~~l~~lh~kYGp 166 (633)
T PLN02738 104 FPATLRNGLAKLGPPGELLAFLFTWVEAGEGYPKIPEAKGSISAVRG-----------------EAFFIPLYELFLTYGG 166 (633)
T ss_pred chHHHHhhhhhCCCCCchHHHHHcccccccccccCccccCcHHHhcC-----------------chHHHHHHHHHHHhCC
Confidence 58999999999999999644 443 44433321 1123577899999998
Q ss_pred CC
Q 034353 95 LM 96 (97)
Q Consensus 95 ~~ 96 (97)
+|
T Consensus 167 I~ 168 (633)
T PLN02738 167 IF 168 (633)
T ss_pred EE
Confidence 76
No 12
>PLN03112 cytochrome P450 family protein; Provisional
Probab=95.42 E-value=0.014 Score=46.41 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=25.6
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 44 I~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
.+||++..++||+.++.+ + + .-++.+|.++||++|
T Consensus 34 ppgp~~~pl~G~~~~~~~--------------~--~--~~~~~~~~~kyG~v~ 68 (514)
T PLN03112 34 PPGPPRWPIVGNLLQLGP--------------L--P--HRDLASLCKKYGPLV 68 (514)
T ss_pred ccCCCCCCeeeeHHhcCC--------------c--h--HHHHHHHHHHhCCeE
Confidence 579999999999866521 1 1 126788999999887
No 13
>PLN02966 cytochrome P450 83A1
Probab=95.40 E-value=0.0089 Score=47.57 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=27.5
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 43 GI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
=++||++..++||+.++.. .....++.+|.++||++|
T Consensus 30 ~ppgp~~~p~~G~l~~l~~-----------------~~~~~~~~~~~~~yG~v~ 66 (502)
T PLN02966 30 LPPGPSPLPVIGNLLQLQK-----------------LNPQRFFAGWAKKYGPIL 66 (502)
T ss_pred CCcCCCCCCeeccHHhcCC-----------------CChhHHHHHHHHHhCCeE
Confidence 3789998899999865521 112357899999999987
No 14
>PLN02774 brassinosteroid-6-oxidase
Probab=94.97 E-value=0.024 Score=44.67 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=31.1
Q ss_pred HHHHHHcCC-CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 36 EKFLRQQGL-KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 36 ~~~lr~QGI-~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
+.++++.|. +||++-.++||..++.+ | + .-++++|.++||++|+
T Consensus 24 ~~~~~r~~~ppgp~~~P~~G~~~~~~~--------------~--~--~~~~~~~~~~yG~i~~ 68 (463)
T PLN02774 24 EVRYSKKGLPPGTMGWPLFGETTEFLK--------------Q--G--PDFMKNQRLRYGSFFK 68 (463)
T ss_pred hhccCCCCCCCCCCCCCchhhHHHHHH--------------h--h--HHHHHHHHHHhccCcc
Confidence 334456687 48888889999877643 1 1 1267899999999874
No 15
>PLN02196 abscisic acid 8'-hydroxylase
Probab=94.96 E-value=0.044 Score=43.24 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=25.1
Q ss_pred cCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 42 QGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 42 QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
.|.+||++-.++||..++.+ .| | .-++.+|.++||++|
T Consensus 35 ~~Ppgp~~~P~iG~~~~~~~-------------~~--~--~~~~~~~~~~yG~i~ 72 (463)
T PLN02196 35 PLPPGTMGWPYVGETFQLYS-------------QD--P--NVFFASKQKRYGSVF 72 (463)
T ss_pred CCCCCCCCCCccchHHHHHh-------------cC--H--HHHHHHHHHHhhhhh
Confidence 35555556678999876532 11 1 126789999999876
No 16
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.61 E-value=0.11 Score=42.27 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhchHHHHHHHH----HcCCCCCCCcCC---CCCHHHHHHHHHHhh
Q 034353 18 LTWAWRVLNWVWLRPKKLEKFLR----QQGLKGNSYRLL---FGDLKENSIELKEAK 67 (97)
Q Consensus 18 ~~~~~~~~~~~w~rP~rl~~~lr----~QGI~Gpp~~~l---~Gn~~e~~~~~~~a~ 67 (97)
+.++|.+++++|-.|++++|++| +||++--+--|+ -||-.+-.+|.+++.
T Consensus 55 v~llwwlv~~iw~sP~t~~Ryfr~rKRdrgyqALStGliAagAGda~lARkmt~~~~ 111 (531)
T COG3898 55 VLLLWWLVRSIWESPYTARRYFRERKRDRGYQALSTGLIAAGAGDASLARKMTARAS 111 (531)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhhhhhhhccCchHHHHHHHHHHH
Confidence 34679999999999999999986 578876666666 489888888866653
No 17
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=94.43 E-value=0.049 Score=43.14 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=27.3
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 43 GLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 43 GI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
-++||++..++||+.++.+ | .....+++|.++||++|
T Consensus 31 ~pPgp~~~p~~g~l~~~~~--------------~---~~~~~~~~~~~~yG~v~ 67 (503)
T PLN02394 31 LPPGPAAVPIFGNWLQVGD--------------D---LNHRNLAEMAKKYGDVF 67 (503)
T ss_pred CCcCCCCCCeeeeHHhcCC--------------C---chhHHHHHHHHHhCCeE
Confidence 3679999999999866532 1 01247789999999876
No 18
>PLN02971 tryptophan N-hydroxylase
Probab=93.08 E-value=0.14 Score=41.37 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=26.3
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcC-CCC
Q 034353 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYE-PLM 96 (97)
Q Consensus 44 I~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YG-k~~ 96 (97)
.+||++..++||+.++.+ | +....++++|.++|| ++|
T Consensus 59 PPGP~~lPiiGnl~~l~~--------------~--~~~~~~l~~~~~~yg~~i~ 96 (543)
T PLN02971 59 PPGPTGFPIVGMIPAMLK--------------N--RPVFRWLHSLMKELNTEIA 96 (543)
T ss_pred CcCCCCCCcccchHHhcc--------------C--CcHhHHHHHHHHHhCCceE
Confidence 569998899999877632 1 112246889999999 565
No 19
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=91.69 E-value=0.17 Score=40.53 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=20.3
Q ss_pred HHHHcCCCCCCCcCCCCCHHHHHH
Q 034353 38 FLRQQGLKGNSYRLLFGDLKENSI 61 (97)
Q Consensus 38 ~lr~QGI~Gpp~~~l~Gn~~e~~~ 61 (97)
++|+.|++||++..++||+.++..
T Consensus 27 ~~~~~~~p~p~~~pl~G~~~~~~~ 50 (500)
T PLN02169 27 HKKPHGQPILKNWPFLGMLPGMLH 50 (500)
T ss_pred HhccCCCCCCCCCCcccchHHHHH
Confidence 567779999999999999977653
No 20
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=91.63 E-value=0.48 Score=37.77 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHcCCCCCCCcCCCCCHHHH
Q 034353 39 LRQQGLKGNSYRLLFGDLKEN 59 (97)
Q Consensus 39 lr~QGI~Gpp~~~l~Gn~~e~ 59 (97)
|++++++||++-.++||..++
T Consensus 27 ~~~~~~pgp~~~p~~G~~~~~ 47 (516)
T PLN03195 27 WSQRNRKGPKSWPIIGAALEQ 47 (516)
T ss_pred hhccccCCCCCCCeecchHHH
Confidence 445679999998999998554
No 21
>PLN02500 cytochrome P450 90B1
Probab=91.24 E-value=0.49 Score=37.49 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=26.2
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 44 I~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
.+||++..++||..++.+. ..|+ ...-++.+|.++||++|.
T Consensus 40 PPgp~~~PiiGn~~~~~~~----------~~~~---~~~~~~~~~~~~yG~v~~ 80 (490)
T PLN02500 40 PPGNMGWPFLGETIGYLKP----------YSAT---SIGEFMEQHISRYGKIYR 80 (490)
T ss_pred CCCCcCCCchhhHHHHHhh----------cccC---ChHHHHHHHHHHhccccc
Confidence 3499989999998654320 0011 112357889999998874
No 22
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=91.03 E-value=0.13 Score=38.26 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=27.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
+||++-.++||..++.+ .....-++++|.++||++|
T Consensus 2 pgp~~~p~~G~~~~~~~----------------~~~~~~~~~~~~~kyG~i~ 37 (463)
T PF00067_consen 2 PGPPPLPILGNLLQFRR----------------KGNPHEFFRELHKKYGPIF 37 (463)
T ss_dssp SCSSSBTTTBTHHHHHT----------------THHHHHHHHHHHHHHTSEE
T ss_pred cCCCCcCceeEHHHhcC----------------CCcHHHHHHHHHHHhCCEE
Confidence 58999999999999873 0112236799999999876
No 23
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=90.29 E-value=1.3 Score=28.79 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=37.2
Q ss_pred chHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHcCCCCC-------CCcCCCCCHHHHHHHHHHh
Q 034353 3 LPLKSIALTI-VIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGN-------SYRLLFGDLKENSIELKEA 66 (97)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~~~~~w~rP~rl~~~lr~QGI~Gp-------p~~~l~Gn~~e~~~~~~~a 66 (97)
..++..+..+ +++++++.+++++..+|--|.++.+.++++.-+-- =-.+.-||.++-.+....+
T Consensus 14 ~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a 85 (108)
T PF07219_consen 14 TSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSRGLIALAEGDWQRAEKLLAKA 85 (108)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444443333 23344556789999999999888665443222100 0125678988877765554
No 24
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=89.71 E-value=0.7 Score=37.03 Aligned_cols=46 Identities=22% Similarity=0.116 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 34 KLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 34 rl~~~lr~QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
++..+-.++-.+||++..++||+..+.+ + + .-++.+|.++||++|.
T Consensus 23 ~~~~~~~~~~pPgp~~~Pl~G~l~~~~~--------------~--~--~~~~~~~~~~yG~i~~ 68 (504)
T PLN00110 23 SLLPKPSRKLPPGPRGWPLLGALPLLGN--------------M--P--HVALAKMAKRYGPVMF 68 (504)
T ss_pred HHhhcccCCCcccCCCCCeeechhhcCC--------------c--h--HHHHHHHHHHhCCeEE
Confidence 3333444455679988889999855521 1 1 1378899999998763
No 25
>PLN02655 ent-kaurene oxidase
Probab=89.66 E-value=0.21 Score=39.44 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
+||++..++||+.++.. + ....++++|.++||++|+
T Consensus 2 pgp~~lP~iG~l~~~~~--------------~---~~~~~~~~~~~~yG~i~~ 37 (466)
T PLN02655 2 PAVPGLPVIGNLLQLKE--------------K---KPHRTFTKWSEIYGPIYT 37 (466)
T ss_pred cCCCCCCccccHHHcCC--------------C---chhHHHHHHHHHhCCeEE
Confidence 68988889999977632 0 112488999999999873
No 26
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=88.39 E-value=0.41 Score=37.54 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
+||++-.++||+.++.. +........++++|.++||++|.
T Consensus 10 pg~~~~P~iG~~~~l~~-------------~~~~~~~~~~~~~~~~~yG~i~~ 49 (452)
T PLN03141 10 KGSLGWPVIGETLDFIS-------------CAYSSRPESFMDKRRSLYGKVFK 49 (452)
T ss_pred CCCCCCCchhhHHHHHh-------------hcccCChHHHHHHHHHHhhheee
Confidence 47777788999877643 00011122367899999999874
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=88.24 E-value=1.1 Score=35.78 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=25.3
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
+||.+-.++||..++.+-.. +.| ...++++|.++||++|.
T Consensus 33 pgp~~~P~iG~~~~~~~~~~---------~~~----~~~~~~~~~~~yG~v~~ 72 (472)
T PLN02987 33 PGSLGLPLVGETLQLISAYK---------TEN----PEPFIDERVARYGSLFM 72 (472)
T ss_pred CCCcCCCchhhHHHHHhhcc---------cCC----hHHHHHHHHHHhchhhh
Confidence 47777788999977642000 011 12367899999998773
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=77.60 E-value=6.9 Score=30.53 Aligned_cols=63 Identities=10% Similarity=0.139 Sum_probs=33.5
Q ss_pred chHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHcCCC-CC------CCcCCCCCHHHHHHHHHH
Q 034353 3 LPLKSIALTIVI-VTVLTWAWRVLNWVWLRPKKLEKFLRQQGLK-GN------SYRLLFGDLKENSIELKE 65 (97)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~w~rP~rl~~~lr~QGI~-Gp------p~~~l~Gn~~e~~~~~~~ 65 (97)
.+++..++.+++ +++++++|+++..+|--|.++++.+.+..-+ |- --.+.-||..+-.+....
T Consensus 39 ~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~ 109 (409)
T TIGR00540 39 MSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAK 109 (409)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344444333322 3334467889999998888776654432221 10 012455777776655433
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=76.60 E-value=7.2 Score=30.42 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHcCC-CCC------CCcCCCCCHHHHHHHHHH
Q 034353 2 ELPLKSIALTIVI-VTVLTWAWRVLNWVWLRPKKLEKFLRQQGL-KGN------SYRLLFGDLKENSIELKE 65 (97)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~rP~rl~~~lr~QGI-~Gp------p~~~l~Gn~~e~~~~~~~ 65 (97)
|.+++..++.+++ ++++.++++++..+|-.|.++++.+++..- +|- --.+.-||..+..++...
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~ 109 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMTR 109 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4445555444433 333446688888888888877665443222 110 011334888876655443
No 30
>PLN03018 homomethionine N-hydroxylase
Probab=60.50 E-value=12 Score=30.35 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHHhchHHHHHHHHHcCCCCCCCcCCCCCHHHH
Q 034353 22 WRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKEN 59 (97)
Q Consensus 22 ~~~~~~~w~rP~rl~~~lr~QGI~Gpp~~~l~Gn~~e~ 59 (97)
+.++....-||..-.+. ..+=.+||++-.++||+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~PPgp~~~P~iGnl~~l 57 (534)
T PLN03018 21 ITLLGRILSRPSKTKDR-SRQLPPGPPGWPILGNLPEL 57 (534)
T ss_pred HHHHHHHHhhhcccCCC-CCCCCcCCCCCCeeccHHHh
Confidence 34555555566332111 11125688888999999776
No 31
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=50.00 E-value=37 Score=27.22 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhchHHHHHHHHHcCCCCC
Q 034353 20 WAWRVLNWVWLRPKKLEKFLRQQGLKGN 47 (97)
Q Consensus 20 ~~~~~~~~~w~rP~rl~~~lr~QGI~Gp 47 (97)
.+..++..+|..|+.+.+.||+||.-=|
T Consensus 294 ~fs~fys~i~~nP~diAe~lkk~g~~Ip 321 (404)
T PRK12417 294 LLSYFFSFVNINTKQIAKDMLKSGNYIP 321 (404)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCCccc
Confidence 3456778899999999999999986433
No 32
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=48.84 E-value=40 Score=17.73 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=20.8
Q ss_pred hHHHHHHHHHcCCCCCCCcCCCCCHHHHHHH
Q 034353 32 PKKLEKFLRQQGLKGNSYRLLFGDLKENSIE 62 (97)
Q Consensus 32 P~rl~~~lr~QGI~Gpp~~~l~Gn~~e~~~~ 62 (97)
=..|+..|.++||.-|+.. .+-.|+.++
T Consensus 6 ~~~L~~wL~~~gi~~~~~~---~~rd~Ll~~ 33 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPKSA---KTRDELLKL 33 (38)
T ss_pred HHHHHHHHHHcCCCCCCCC---CCHHHHHHH
Confidence 3578899999999988776 555555543
No 33
>PTZ00200 cysteine proteinase; Provisional
Probab=44.78 E-value=25 Score=28.70 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=19.1
Q ss_pred CCCCCCCccccccchHHHHHHHhcCCCCC
Q 034353 69 RPLSLDDNIAIRVNPFLHKLVNDYEPLMS 97 (97)
Q Consensus 69 ~~~~~shdi~~rv~P~~~~w~k~YGk~~~ 97 (97)
..++.+++...-+.-.|.+|.++|+|.|.
T Consensus 110 ~~i~~~~~~e~e~~~~F~~f~~ky~K~Y~ 138 (448)
T PTZ00200 110 GYISDDPKLEFEVYLEFEEFNKKYNRKHA 138 (448)
T ss_pred CCcCCCccchHHHHHHHHHHHHHhCCcCC
Confidence 34444334333344579999999999984
No 34
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=41.99 E-value=66 Score=25.64 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=23.2
Q ss_pred HHHHHHHHHhchHHHHHHHHHcCCCCCCCc
Q 034353 21 AWRVLNWVWLRPKKLEKFLRQQGLKGNSYR 50 (97)
Q Consensus 21 ~~~~~~~~w~rP~rl~~~lr~QGI~Gpp~~ 50 (97)
+..++..+|..|+.+.+.|++||..=|.-|
T Consensus 288 fs~fys~i~~nP~diA~~Lkk~g~~IpGiR 317 (395)
T TIGR02920 288 LSYFFTFVNINPKEISKSFRKSGNYIPGIA 317 (395)
T ss_pred HHHHHHHheECHHHHHHHHHHCCCCccCcC
Confidence 345677889999999999999987544333
No 35
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=40.83 E-value=23 Score=23.39 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=18.0
Q ss_pred hHHHHHHHHHcCCCCCCCcCCCC
Q 034353 32 PKKLEKFLRQQGLKGNSYRLLFG 54 (97)
Q Consensus 32 P~rl~~~lr~QGI~Gpp~~~l~G 54 (97)
...+.++|+++||+|---++-.|
T Consensus 25 A~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 25 ASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred HHHHHHHHHHCCCCceEEEEEec
Confidence 35788999999999976666554
No 36
>PHA03240 envelope glycoprotein M; Provisional
Probab=39.55 E-value=61 Score=24.56 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=11.1
Q ss_pred hHHHHHHHHHcCC
Q 034353 32 PKKLEKFLRQQGL 44 (97)
Q Consensus 32 P~rl~~~lr~QGI 44 (97)
|.|+-.+++.+|-
T Consensus 234 PQKl~dKw~~~k~ 246 (258)
T PHA03240 234 PQKLFDKWDLHGS 246 (258)
T ss_pred cHHHHHHHhhhcc
Confidence 8999899998875
No 37
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=36.54 E-value=12 Score=32.83 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCCCcCC
Q 034353 35 LEKFLRQQGLKGNSYRLL 52 (97)
Q Consensus 35 l~~~lr~QGI~Gpp~~~l 52 (97)
++|.+||||+.||++.+.
T Consensus 65 v~~~l~k~g~~GPk~~~~ 82 (787)
T PF03115_consen 65 VKRQLRKKGVTGPKPAVS 82 (787)
T ss_dssp ------------------
T ss_pred HhhhhhccCCCCCCcceE
Confidence 456789999999999874
No 38
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=36.14 E-value=81 Score=19.04 Aligned_cols=8 Identities=25% Similarity=0.808 Sum_probs=4.7
Q ss_pred HHHHHcCC
Q 034353 37 KFLRQQGL 44 (97)
Q Consensus 37 ~~lr~QGI 44 (97)
|+++.+|+
T Consensus 43 RylK~~g~ 50 (62)
T PF11120_consen 43 RYLKPAGT 50 (62)
T ss_pred cccCccce
Confidence 35566665
No 39
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=34.39 E-value=88 Score=17.49 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHcCCC
Q 034353 13 VIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLK 45 (97)
Q Consensus 13 ~~~~~~~~~~~~~~~~w~rP~rl~~~lr~QGI~ 45 (97)
+++++.+++.+++.. -++|.|++.|+.
T Consensus 23 lIl~vG~~va~~v~~------~~~~~l~~~~~d 49 (53)
T PF05552_consen 23 LILIVGWWVAKFVRK------LVRRLLEKRGVD 49 (53)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHcCCc
Confidence 334444455566555 457788888774
No 40
>PTZ00203 cathepsin L protease; Provisional
Probab=33.89 E-value=29 Score=27.25 Aligned_cols=14 Identities=7% Similarity=0.330 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCCCC
Q 034353 84 FLHKLVNDYEPLMS 97 (97)
Q Consensus 84 ~~~~w~k~YGk~~~ 97 (97)
.|.+|.++|+|.|.
T Consensus 37 ~f~~~~~~~~K~Y~ 50 (348)
T PTZ00203 37 LFEEFKRTYQRAYG 50 (348)
T ss_pred HHHHHHHHhCCCCC
Confidence 68999999999984
No 41
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=33.10 E-value=96 Score=24.35 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.1
Q ss_pred hHHHHHHHHHcCCCCC
Q 034353 32 PKKLEKFLRQQGLKGN 47 (97)
Q Consensus 32 P~rl~~~lr~QGI~Gp 47 (97)
=.++||+.++|||=|=
T Consensus 318 ie~lEr~~ek~~VLGR 333 (348)
T PF08733_consen 318 IERLERKEEKEGVLGR 333 (348)
T ss_pred HHHHHHHHHhcCccCC
Confidence 3488999999999873
No 42
>COG3771 Predicted membrane protein [Function unknown]
Probab=32.98 E-value=1.4e+02 Score=19.44 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=9.6
Q ss_pred hchHHHHHHHHHcCC
Q 034353 30 LRPKKLEKFLRQQGL 44 (97)
Q Consensus 30 ~rP~rl~~~lr~QGI 44 (97)
.+-.|++|.+++|--
T Consensus 69 l~~~~l~rqiKr~~~ 83 (97)
T COG3771 69 LSLMRLERQIKRLEN 83 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455677777777643
No 43
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=32.80 E-value=91 Score=17.15 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=13.1
Q ss_pred HHHHHHhchHHHHHHHHHc
Q 034353 24 VLNWVWLRPKKLEKFLRQQ 42 (97)
Q Consensus 24 ~~~~~w~rP~rl~~~lr~Q 42 (97)
++...+++-+++++.++++
T Consensus 21 l~~~~~~~~r~~~~~l~~~ 39 (46)
T PF04995_consen 21 LIVWSLRRRRRLRKELKRL 39 (46)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445677778888877765
No 44
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=32.56 E-value=55 Score=27.96 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCCC-----CCcCCC---CCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcC
Q 034353 33 KKLEKFLRQQGLKGN-----SYRLLF---GDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYE 93 (97)
Q Consensus 33 ~rl~~~lr~QGI~Gp-----p~~~l~---Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YG 93 (97)
.|+++++|+.|+++| +|+... |-.+.+++. -|-+-.++||=.++-+++|
T Consensus 324 lrLAK~lkk~Gi~ipviyYVsPqVWAWR~~Rikki~k~------------vD~ll~IfPFE~~~y~~~g 380 (608)
T PRK01021 324 FLLIKKLRKRGYKGKIVHYVCPSIWAWRPKRKTILEKY------------LDLLLLILPFEQNLFKDSP 380 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEECccceeeCcchHHHHHHH------------hhhheecCccCHHHHHhcC
Confidence 468899999998877 566553 556666553 2445556666666666665
No 45
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=32.25 E-value=57 Score=25.90 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCCC-----CCcCCC---CCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcC
Q 034353 33 KKLEKFLRQQGLKGN-----SYRLLF---GDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYE 93 (97)
Q Consensus 33 ~rl~~~lr~QGI~Gp-----p~~~l~---Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YG 93 (97)
.|+.+++|+.|+++| +|+... |-.+.+++. -|.+-.++||=.++-+++|
T Consensus 96 lrlak~lk~~~~~~~viyYI~PqvWAWr~~R~~~i~~~------------~D~ll~ifPFE~~~y~~~g 152 (373)
T PF02684_consen 96 LRLAKKLKKRGIPIKVIYYISPQVWAWRPGRAKKIKKY------------VDHLLVIFPFEPEFYKKHG 152 (373)
T ss_pred HHHHHHHHHhCCCceEEEEECCceeeeCccHHHHHHHH------------HhheeECCcccHHHHhccC
Confidence 478899999999987 566553 445555542 3557788899888888887
No 46
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.42 E-value=58 Score=27.12 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCCCC
Q 034353 84 FLHKLVNDYEPLMS 97 (97)
Q Consensus 84 ~~~~w~k~YGk~~~ 97 (97)
|+.+..+|||.+|+
T Consensus 56 Fl~~~~~K~GdVFT 69 (486)
T KOG0684|consen 56 FLRECRKKYGDVFT 69 (486)
T ss_pred HHHHHHHhcCCeEE
Confidence 88999999999984
No 47
>PRK11677 hypothetical protein; Provisional
Probab=31.33 E-value=1.2e+02 Score=20.77 Aligned_cols=21 Identities=24% Similarity=0.055 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhchHHHHHHHH
Q 034353 20 WAWRVLNWVWLRPKKLEKFLR 40 (97)
Q Consensus 20 ~~~~~~~~~w~rP~rl~~~lr 40 (97)
++.|+.+.---..+.+++.|.
T Consensus 19 ~~~R~~~~~~~~q~~le~eLe 39 (134)
T PRK11677 19 VAMRFGNRKLRQQQALQYELE 39 (134)
T ss_pred HHHhhccchhhHHHHHHHHHH
Confidence 344554444445566666554
No 48
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=31.17 E-value=81 Score=20.69 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCC---CCCCcCCCCCHHHHHHHHHHhhcC
Q 034353 34 KLEKFLRQQGLK---GNSYRLLFGDLKENSIELKEAKAR 69 (97)
Q Consensus 34 rl~~~lr~QGI~---Gpp~~~l~Gn~~e~~~~~~~a~s~ 69 (97)
+..+.+++.|++ ||-.+.+=|++.|+.+...++...
T Consensus 25 ~~i~~lk~~glky~~~pm~T~iEg~~del~~~ik~~~Ea 63 (100)
T COG0011 25 EAIEILKESGLKYQLGPMGTVIEGELDELMEAVKEAHEA 63 (100)
T ss_pred HHHHHHHHcCCceeecCcceEEEecHHHHHHHHHHHHHH
Confidence 456789999996 899999999999988776665443
No 49
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=30.77 E-value=31 Score=20.43 Aligned_cols=10 Identities=0% Similarity=0.182 Sum_probs=8.9
Q ss_pred HHHHHHHhcC
Q 034353 84 FLHKLVNDYE 93 (97)
Q Consensus 84 ~~~~w~k~YG 93 (97)
-|.+|.++||
T Consensus 53 ~ye~w~~~FG 62 (62)
T PF09336_consen 53 KYEEWTKEFG 62 (62)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHcC
Confidence 6789999998
No 50
>PLN02648 allene oxide synthase
Probab=29.75 E-value=45 Score=26.97 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=24.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCC-CC
Q 034353 45 KGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEP-LM 96 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk-~~ 96 (97)
+|+..-.++|.+.+..+-. .......|+.+-.++||+ +|
T Consensus 20 Pg~~g~P~iG~~~~~~~~~-------------~~~~~~~F~~~~~~kyG~~vf 59 (480)
T PLN02648 20 PGSYGLPFLGAIKDRLDYF-------------YFQGEDEFFRSRVEKYKSTVF 59 (480)
T ss_pred CCCCCCcCcchhhhhhhHH-------------HhcChHHHHHHHHHHhCCceE
Confidence 4444456789887654410 011223688889999997 76
No 51
>PF15050 SCIMP: SCIMP protein
Probab=29.66 E-value=1.7e+02 Score=20.20 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=3.7
Q ss_pred HHHHcCCC
Q 034353 38 FLRQQGLK 45 (97)
Q Consensus 38 ~lr~QGI~ 45 (97)
.+.|||=+
T Consensus 33 ~~lRqGkk 40 (133)
T PF15050_consen 33 WQLRQGKK 40 (133)
T ss_pred HHHHcccc
Confidence 34455543
No 52
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=29.05 E-value=1.6e+02 Score=21.34 Aligned_cols=62 Identities=19% Similarity=0.074 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCCCCCCcCCCCCHHHHHHHHHHhhcCC------------CCCCCccccccchHHHHHHHhcCCC
Q 034353 34 KLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARP------------LSLDDNIAIRVNPFLHKLVNDYEPL 95 (97)
Q Consensus 34 rl~~~lr~QGI~Gpp~~~l~Gn~~e~~~~~~~a~s~~------------~~~shdi~~rv~P~~~~w~k~YGk~ 95 (97)
.+-+.++++|+++|-...-..+..++.+...++...- .+.++.-.+....|..+..++||+.
T Consensus 203 ~~~~~l~~~g~~~p~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~f~~~~~~~~g~~ 276 (312)
T cd06333 203 LPAKNLRERGYKGPIYQTHGVASPDFLRLAGKAAEGAILPAGPVLVADQLPDSDPQKKVALDFVKAYEAKYGAG 276 (312)
T ss_pred HHHHHHHHcCCCCCEEeecCcCcHHHHHHhhHhhcCcEeecccceeeeeCCCCCcchHHHHHHHHHHHHHhCCC
Confidence 3557788999987643222223344444332221111 0111111234556777788888864
No 53
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=28.56 E-value=50 Score=18.46 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=10.5
Q ss_pred HHHHHHHHHcCCC
Q 034353 33 KKLEKFLRQQGLK 45 (97)
Q Consensus 33 ~rl~~~lr~QGI~ 45 (97)
.-|++.|++.|+.
T Consensus 9 ~eL~~~L~~~G~~ 21 (44)
T smart00540 9 AELRAELKQYGLP 21 (44)
T ss_pred HHHHHHHHHcCCC
Confidence 4578899999996
No 54
>PF13276 HTH_21: HTH-like domain
Probab=28.26 E-value=63 Score=18.24 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=15.1
Q ss_pred hchHHHHHHHHHcCCCCCCC
Q 034353 30 LRPKKLEKFLRQQGLKGNSY 49 (97)
Q Consensus 30 ~rP~rl~~~lr~QGI~Gpp~ 49 (97)
..-+++.+.+++.||..+..
T Consensus 38 v~~krV~RlM~~~gL~~~~r 57 (60)
T PF13276_consen 38 VSRKRVRRLMREMGLRSKRR 57 (60)
T ss_pred ccHHHHHHHHHHcCCcccCC
Confidence 56678888888888876643
No 55
>PF12994 DUF3878: Domain of unknown function, E. rectale Gene description (DUF3878); InterPro: IPR024538 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=27.51 E-value=54 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.8
Q ss_pred chHHHHHHHHHcCCCCCCCcCCCCCH
Q 034353 31 RPKKLEKFLRQQGLKGNSYRLLFGDL 56 (97)
Q Consensus 31 rP~rl~~~lr~QGI~Gpp~~~l~Gn~ 56 (97)
+-+++++.|++||+.|--|.+.-++.
T Consensus 249 ~~~~~~~~L~e~Gf~G~~p~~~~~~~ 274 (299)
T PF12994_consen 249 KRKQAENELKEQGFEGKYPEYQREEP 274 (299)
T ss_pred HHHHHHHHHHhcCCcccCcceecCCc
Confidence 35667889999999999999888883
No 56
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=27.32 E-value=46 Score=21.52 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=12.5
Q ss_pred HhchHHHHHHHHHcCCCC
Q 034353 29 WLRPKKLEKFLRQQGLKG 46 (97)
Q Consensus 29 w~rP~rl~~~lr~QGI~G 46 (97)
=+.|++|++.|++.||..
T Consensus 42 ~~G~~~I~~~L~~kGi~~ 59 (121)
T PF02631_consen 42 GKGPRRIRQKLKQKGIDR 59 (121)
T ss_dssp T--HHHHHHHHHHTT--H
T ss_pred cccHHHHHHHHHHHCCCh
Confidence 368999999999999963
No 57
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=27.18 E-value=1.1e+02 Score=20.56 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=8.5
Q ss_pred HHHHHHHHhchHH
Q 034353 22 WRVLNWVWLRPKK 34 (97)
Q Consensus 22 ~~~~~~~w~rP~r 34 (97)
+-+++.+.|.|.+
T Consensus 21 ~~~l~kfl~kPi~ 33 (141)
T PRK08476 21 IVILNSWLYKPLL 33 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 3466677777764
No 58
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=26.94 E-value=63 Score=20.83 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=27.3
Q ss_pred CCCCCcCCC--CCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcC
Q 034353 45 KGNSYRLLF--GDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYE 93 (97)
Q Consensus 45 ~Gpp~~~l~--Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YG 93 (97)
+-|.|+.++ |+..|++.+..+....-+-++|++.|+.. +.+.+..|
T Consensus 33 ~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~---rNLe~~~~ 80 (95)
T PF13167_consen 33 RKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQ---RNLEKALG 80 (95)
T ss_pred CCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHH---HHHHHHHC
Confidence 457788776 55888887655432222224788777653 55555544
No 59
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=26.93 E-value=1.1e+02 Score=19.40 Aligned_cols=11 Identities=9% Similarity=0.450 Sum_probs=3.4
Q ss_pred HHHHHHHHHHH
Q 034353 19 TWAWRVLNWVW 29 (97)
Q Consensus 19 ~~~~~~~~~~w 29 (97)
.++|.++..-+
T Consensus 20 IvvW~iv~ieY 30 (81)
T PF00558_consen 20 IVVWTIVYIEY 30 (81)
T ss_dssp HHHHHHH----
T ss_pred HHHHHHHHHHH
Confidence 34555544444
No 60
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.26 E-value=35 Score=28.58 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=24.7
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 44 LKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 44 I~Gpp~~~l~Gn~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
|+||++--++|+.....+-.. .. -|+ +.++..++||+.|
T Consensus 52 IP~p~~~~~l~~l~~~~~~~~----~~---lh~-------~~~~~~~~YG~I~ 90 (519)
T KOG0159|consen 52 IPGPKGLPFLGLLWIWRAGGA----TK---LHQ-------HIVQLHQKYGPIF 90 (519)
T ss_pred cCCCCCccHHHHHHHHHhhhh----hH---HHH-------HHHHHHHHcCcee
Confidence 688888888888764222100 00 134 6677889999887
No 61
>PF15187 Augurin: Oesophageal cancer-related gene 4
Probab=26.11 E-value=88 Score=20.95 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCCCCcCCC--CC--HHHHHHHHHHhhcCCCCCCCccccccchHHHHHHHhc
Q 034353 34 KLEKFLRQQGLKGNSYRLLF--GD--LKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDY 92 (97)
Q Consensus 34 rl~~~lr~QGI~Gpp~~~l~--Gn--~~e~~~~~~~a~s~~~~~shdi~~rv~P~~~~w~k~Y 92 (97)
.|++.|++.-..|+|.+--+ +. .+|...-....+ -++--|--|..++|.+++
T Consensus 2 kL~~~LqkRea~~~p~k~~VaV~~skAkeFL~~l~R~k-------R~lWDRsrPdVQQW~qQF 57 (114)
T PF15187_consen 2 KLKRMLQKREAPGAPSKASVAVPESKAKEFLASLKRQK-------RQLWDRSRPDVQQWYQQF 57 (114)
T ss_pred hHHHHHHhccCCCCCCcCccccCHHHHHHHHHHhhhHH-------HhhhccCCHHHHHHHHHH
Confidence 47788898888887776543 22 333322111111 122234457888998875
No 62
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=24.90 E-value=46 Score=25.21 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=26.3
Q ss_pred HHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 63 LKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 63 ~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
++.|.|.|+. +|++.=.+.|..-.|++.|..-|
T Consensus 23 RQRAHsNP~s-Dh~l~yPvsP~~mDWS~~yp~f~ 55 (249)
T KOG3115|consen 23 RQRAHSNPLS-DHTLEYPVSPQEMDWSKYYPDFR 55 (249)
T ss_pred HHHhhcCCCc-cCcccCCCChHhCcHHHhhhhhh
Confidence 5668888885 57777778899999999998643
No 63
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=24.82 E-value=65 Score=18.01 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=13.5
Q ss_pred hchHHHHHHHHHcCCC
Q 034353 30 LRPKKLEKFLRQQGLK 45 (97)
Q Consensus 30 ~rP~rl~~~lr~QGI~ 45 (97)
-+|.+-.+.|+++||+
T Consensus 15 k~~~~Q~~~L~~~Gi~ 30 (47)
T PF13986_consen 15 KRPSKQIRWLRRNGIP 30 (47)
T ss_pred CCHHHHHHHHHHCCCe
Confidence 3678888999999995
No 64
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=23.82 E-value=69 Score=17.55 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=14.2
Q ss_pred CCCCcCCCCCHHHHHHHHHH
Q 034353 46 GNSYRLLFGDLKENSIELKE 65 (97)
Q Consensus 46 Gpp~~~l~Gn~~e~~~~~~~ 65 (97)
+|..-.+.|...|++.+..+
T Consensus 6 ~~~~i~lvGKAWeIr~~Lke 25 (38)
T PF13072_consen 6 HENGIILVGKAWEIRAKLKE 25 (38)
T ss_pred cCCeEEEEehHHHHHHHHHH
Confidence 45555788999999875443
No 65
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=23.24 E-value=1.6e+02 Score=16.95 Aligned_cols=30 Identities=17% Similarity=0.394 Sum_probs=13.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034353 1 MELPLKSIALTIVIVTVLTWAWRVLNWVWL 30 (97)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 30 (97)
|+++.-+-++.....++++.+..++.-.|.
T Consensus 1 MDCvLRs~L~~~F~~lIC~Fl~~~~~F~~F 30 (54)
T PF06716_consen 1 MDCVLRSYLLLAFGFLICLFLFCLVVFIWF 30 (54)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566655555444333333333333444444
No 66
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=22.88 E-value=2.5e+02 Score=23.07 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.6
Q ss_pred HHHHHHHHH-----hchHHHHHHHHHcCCCCC
Q 034353 21 AWRVLNWVW-----LRPKKLEKFLRQQGLKGN 47 (97)
Q Consensus 21 ~~~~~~~~w-----~rP~rl~~~lr~QGI~Gp 47 (97)
+..++..+| ..|+.+.+.|++||.-=|
T Consensus 372 fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~Ip 403 (474)
T PTZ00219 372 SCALFSKTWIEVSGSSAKDVAKQLKDQGMGMV 403 (474)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCcc
Confidence 445677888 699999999999987544
No 67
>PRK10604 sensor protein RstB; Provisional
Probab=22.68 E-value=3.7e+02 Score=20.84 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=9.1
Q ss_pred HHHHhchHHHHHHHHHcC
Q 034353 26 NWVWLRPKKLEKFLRQQG 43 (97)
Q Consensus 26 ~~~w~rP~rl~~~lr~QG 43 (97)
+.+|..-+++++..++-|
T Consensus 158 ~~~~r~l~~L~~~~~~~~ 175 (433)
T PRK10604 158 RPHWQDMLKLEAAAQRLG 175 (433)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334433455666666544
No 68
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=22.11 E-value=1.8e+02 Score=21.40 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=20.2
Q ss_pred HHHHHHHHhchHHHHHHHHHcCCC
Q 034353 22 WRVLNWVWLRPKKLEKFLRQQGLK 45 (97)
Q Consensus 22 ~~~~~~~w~rP~rl~~~lr~QGI~ 45 (97)
..++.+.+.-|.-+.|..||.|++
T Consensus 63 ~~l~~K~iliP~lL~r~~~k~~~~ 86 (216)
T PRK11492 63 TAFITKVLLVPLIMTYAARKLGDN 86 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 356677788899999999999986
No 69
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=21.91 E-value=2.2e+02 Score=18.13 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=13.7
Q ss_pred HhchHHHHHHHHHc-CCCCCC
Q 034353 29 WLRPKKLEKFLRQQ-GLKGNS 48 (97)
Q Consensus 29 w~rP~rl~~~lr~Q-GI~Gpp 48 (97)
|.-....|+.+|++ ||+|.+
T Consensus 60 ~~~~~~~R~~~R~ry~i~gs~ 80 (104)
T TIGR01571 60 GCYTCFIRIKLREKYGIQGAP 80 (104)
T ss_pred HHHHHHHHHHHHHHhCCCCCC
Confidence 33445677777766 999854
No 70
>PF10271 Tmp39: Putative transmembrane protein; InterPro: IPR019397 This is a family of putative, eukaryote, transmembrane proteins but the function is unknown.
Probab=21.80 E-value=1.4e+02 Score=24.41 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhchHHH
Q 034353 14 IVTVLTWAWRVLNWVWLRPKKL 35 (97)
Q Consensus 14 ~~~~~~~~~~~~~~~w~rP~rl 35 (97)
+++++...+.+++.+||-|..-
T Consensus 44 l~Al~~QyiNiYkTvWWlP~S~ 65 (423)
T PF10271_consen 44 LVALFLQYINIYKTVWWLPNSY 65 (423)
T ss_pred HHHHHHHHHHHHhhhhccCCcc
Confidence 3455557788899999999764
No 71
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=21.72 E-value=67 Score=23.89 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCCCCCC
Q 034353 33 KKLEKFLRQQGLKGNSY 49 (97)
Q Consensus 33 ~rl~~~lr~QGI~Gpp~ 49 (97)
.++|++|+++||+|--.
T Consensus 147 ~~i~~~mK~~~I~g~~~ 163 (211)
T COG2454 147 GRIEEKMKSLGIPGEAS 163 (211)
T ss_pred HHHHHHHHhcCCCceeE
Confidence 47899999999998543
No 72
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=21.43 E-value=98 Score=19.95 Aligned_cols=20 Identities=10% Similarity=0.341 Sum_probs=17.1
Q ss_pred chHHHHHHHHHcCCCCCCCc
Q 034353 31 RPKKLEKFLRQQGLKGNSYR 50 (97)
Q Consensus 31 rP~rl~~~lr~QGI~Gpp~~ 50 (97)
.|..+++.|.+.|+.|+.++
T Consensus 29 tP~VI~ral~Khnl~~~~~~ 48 (87)
T cd00153 29 APQVIRRAMEKHNLESEVAE 48 (87)
T ss_pred CHHHHHHHHHHhCCCcCCcc
Confidence 58899999999999998443
No 73
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=21.39 E-value=1.1e+02 Score=18.45 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhchHHHHHHHHHcCCCCCC
Q 034353 20 WAWRVLNWVWLRPKKLEKFLRQQGLKGNS 48 (97)
Q Consensus 20 ~~~~~~~~~w~rP~rl~~~lr~QGI~Gpp 48 (97)
.+=|-+..-+=|..|+-..|.+.||-||+
T Consensus 24 ~lQR~~~IGynrAariid~lE~~GiV~p~ 52 (63)
T smart00843 24 LLQRRLRIGYNRAARLIDQLEEEGIVGPA 52 (63)
T ss_pred HHHHHHhcchhHHHHHHHHHHHCcCCCCC
Confidence 34566777788999999999999999886
No 74
>PLN02936 epsilon-ring hydroxylase
Probab=20.98 E-value=59 Score=25.84 Aligned_cols=38 Identities=21% Similarity=0.110 Sum_probs=24.6
Q ss_pred CCCCCcCCCCCHHHHHH-HHHHhhcCCCCCCCccccccchHHHHHHHhcCCCC
Q 034353 45 KGNSYRLLFGDLKENSI-ELKEAKARPLSLDDNIAIRVNPFLHKLVNDYEPLM 96 (97)
Q Consensus 45 ~Gpp~~~l~Gn~~e~~~-~~~~a~s~~~~~shdi~~rv~P~~~~w~k~YGk~~ 96 (97)
.|-..-.++|+.-|... ++. .+....+.+|.++||++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~yG~i~ 53 (489)
T PLN02936 15 GDDSGIPVADAKLEDVTDLLG--------------GALFLPLFKWMNEYGPVY 53 (489)
T ss_pred CCCCCCccHHhHHhhHHHHhc--------------cHHHHHHHHHHHHcCCEE
Confidence 46666677888665433 211 122358899999999876
No 75
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.73 E-value=84 Score=18.62 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCCC
Q 034353 34 KLEKFLRQQGLKG 46 (97)
Q Consensus 34 rl~~~lr~QGI~G 46 (97)
+.++.|+++||.+
T Consensus 16 ~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 16 KAEKLLKKNGIPV 28 (73)
T ss_pred HHHHHHHHCCCcE
Confidence 6789999999975
No 76
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.65 E-value=2.2e+02 Score=17.44 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=11.0
Q ss_pred hHHHHHHHHHcCCC
Q 034353 32 PKKLEKFLRQQGLK 45 (97)
Q Consensus 32 P~rl~~~lr~QGI~ 45 (97)
=+.+..+|.+||..
T Consensus 37 ~k~i~~yL~e~gy~ 50 (85)
T PF11337_consen 37 EKAIDWYLQEQGYK 50 (85)
T ss_pred HHHHHHHHHHcCCc
Confidence 45677899999985
No 77
>PF14291 DUF4371: Domain of unknown function (DUF4371)
Probab=20.51 E-value=1.7e+02 Score=21.28 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=21.6
Q ss_pred HHHHHcCC--CCCCC---cCCCCCHHHHHHHHHH
Q 034353 37 KFLRQQGL--KGNSY---RLLFGDLKENSIELKE 65 (97)
Q Consensus 37 ~~lr~QGI--~Gpp~---~~l~Gn~~e~~~~~~~ 65 (97)
+.|.+||+ +|..- +.--||..|+.+++++
T Consensus 72 ~fL~~QgLa~RGh~e~~~s~n~GNFl~ll~l~~~ 105 (235)
T PF14291_consen 72 LFLARQGLAFRGHDESEDSLNNGNFLELLELLAK 105 (235)
T ss_pred HHHHhcccccccCCccccccccccHHHHHHHHHh
Confidence 57889997 57533 3456999999988776
No 78
>PRK00124 hypothetical protein; Validated
Probab=20.41 E-value=95 Score=21.77 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=12.7
Q ss_pred hHHHHHHHHHcCCC--CCCC
Q 034353 32 PKKLEKFLRQQGLK--GNSY 49 (97)
Q Consensus 32 P~rl~~~lr~QGI~--Gpp~ 49 (97)
-+-+-+.+|++|.+ ||++
T Consensus 108 ~R~~~~~lR~~G~~t~Gp~~ 127 (151)
T PRK00124 108 MRDLMATLRRSGIRTGGPKP 127 (151)
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 34566789999975 5655
Done!