Query 034357
Match_columns 97
No_of_seqs 94 out of 96
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 21:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034357.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034357hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2mysa1 b.34.3.1 (A:34-79) Myo 76.3 0.32 2.3E-05 27.7 0.5 13 59-71 3-15 (46)
2 d1kk8a1 b.34.3.1 (A:29-76) Myo 67.9 0.49 3.5E-05 27.0 -0.1 13 59-71 4-16 (48)
3 d1br2a1 b.34.3.1 (A:34-79) Myo 66.9 0.65 4.7E-05 26.2 0.3 12 61-72 2-13 (46)
4 d1cida2 b.1.1.3 (A:106-177) CD 59.0 1.2 9.1E-05 27.4 0.6 16 57-72 40-55 (72)
5 d1wioa4 b.1.1.3 (A:292-363) CD 55.6 1.5 0.00011 27.0 0.5 16 57-72 38-53 (72)
6 d1sr8a_ e.54.1.1 (A:) Cobalami 39.6 6.6 0.00048 28.9 2.0 19 63-81 2-20 (282)
7 d1zaka2 g.41.2.1 (A:128-158) M 31.8 6.3 0.00046 20.5 0.6 6 65-70 5-10 (31)
8 d1w7ja1 b.34.3.1 (A:5-62) Myos 28.2 5.2 0.00038 23.0 -0.2 10 60-69 8-17 (58)
9 d2bgxa1 a.20.1.1 (A:180-260) P 23.7 15 0.0011 22.1 1.3 16 70-85 54-69 (81)
10 d1z1ba1 d.10.1.4 (A:11-59) lam 21.3 11 0.00083 21.2 0.4 18 59-76 12-29 (49)
No 1
>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=76.33 E-value=0.32 Score=27.65 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=11.0
Q ss_pred ccccccCCCCccc
Q 034357 59 SSAWAPDPITGYY 71 (97)
Q Consensus 59 ~~~W~pDP~TGyy 71 (97)
+..|+|||.-||=
T Consensus 3 k~vwVpD~ke~yv 15 (46)
T d2mysa1 3 SSVFVVHPKQSFV 15 (46)
T ss_dssp TEEEEECSSSSEE
T ss_pred ceEEcccCcccEE
Confidence 5679999999985
No 2
>d1kk8a1 b.34.3.1 (A:29-76) Myosin S1 fragment, N-terminal domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=67.93 E-value=0.49 Score=26.96 Aligned_cols=13 Identities=31% Similarity=0.894 Sum_probs=11.0
Q ss_pred ccccccCCCCccc
Q 034357 59 SSAWAPDPITGYY 71 (97)
Q Consensus 59 ~~~W~pDP~TGyy 71 (97)
+.-|+||+.-||=
T Consensus 4 K~vWVPD~kegfv 16 (48)
T d1kk8a1 4 KNCWVPDEKEGFA 16 (48)
T ss_dssp TEEEEEETTTEEE
T ss_pred ceEEecCCcccEE
Confidence 5669999999984
No 3
>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=66.92 E-value=0.65 Score=26.15 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=10.0
Q ss_pred ccccCCCCcccc
Q 034357 61 AWAPDPITGYYR 72 (97)
Q Consensus 61 ~W~pDP~TGyy~ 72 (97)
-|+||+.-||=.
T Consensus 2 VWVPd~kegfv~ 13 (46)
T d1br2a1 2 VWVPSEKHGFEA 13 (46)
T ss_dssp EEEECSSSSEEE
T ss_pred EEeeCCcccEEE
Confidence 399999999853
No 4
>d1cida2 b.1.1.3 (A:106-177) CD4 C2-set domains {Rat (Rattus rattus) [TaxId: 10117]}
Probab=58.99 E-value=1.2 Score=27.39 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=13.9
Q ss_pred CCccccccCCCCcccc
Q 034357 57 GASSAWAPDPITGYYR 72 (97)
Q Consensus 57 ~~~~~W~pDP~TGyy~ 72 (97)
.++.-||+||..|-|.
T Consensus 40 qqK~v~v~~PeaG~Wq 55 (72)
T d1cida2 40 QEKVIQVQAPEAGVWQ 55 (72)
T ss_dssp SSSEEEEESCCSSEEE
T ss_pred ceeeEEecCCCCceEE
Confidence 5578899999999995
No 5
>d1wioa4 b.1.1.3 (A:292-363) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.56 E-value=1.5 Score=27.01 Aligned_cols=16 Identities=19% Similarity=0.667 Sum_probs=13.9
Q ss_pred CCccccccCCCCcccc
Q 034357 57 GASSAWAPDPITGYYR 72 (97)
Q Consensus 57 ~~~~~W~pDP~TGyy~ 72 (97)
.++.-||+||..|-|.
T Consensus 38 qqK~v~v~~PeaG~Wq 53 (72)
T d1wioa4 38 REKAVWVLNPEAGMWQ 53 (72)
T ss_dssp SSSEEEESSCCSEEEE
T ss_pred ceeeEEecCCCCceEE
Confidence 5578899999999995
No 6
>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=39.59 E-value=6.6 Score=28.92 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.3
Q ss_pred ccCCCCcccccCCCCCCCC
Q 034357 63 APDPITGYYRPENRAVEID 81 (97)
Q Consensus 63 ~pDP~TGyy~Pen~~~e~D 81 (97)
|-||+|||=.|++....-|
T Consensus 2 ~~dpv~~~~~p~~~~~~~~ 20 (282)
T d1sr8a_ 2 LIDPIELYRYPEKWIKDRD 20 (282)
T ss_dssp CBCTTTCCBCCGGGCCCSS
T ss_pred cccCccCCcCCHHhccChH
Confidence 6799999999999987544
No 7
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=31.82 E-value=6.3 Score=20.50 Aligned_cols=6 Identities=67% Similarity=1.243 Sum_probs=5.2
Q ss_pred CCCCcc
Q 034357 65 DPITGY 70 (97)
Q Consensus 65 DP~TGy 70 (97)
||+||-
T Consensus 5 DP~TG~ 10 (31)
T d1zaka2 5 DPVTGK 10 (31)
T ss_dssp CTTTCC
T ss_pred CCCCCc
Confidence 999994
No 8
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=28.19 E-value=5.2 Score=23.04 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=7.9
Q ss_pred cccccCCCCc
Q 034357 60 SAWAPDPITG 69 (97)
Q Consensus 60 ~~W~pDP~TG 69 (97)
.-|+|||..|
T Consensus 8 RvWiPd~e~v 17 (58)
T d1w7ja1 8 RVWIPDPEEV 17 (58)
T ss_dssp EEEEEETTTE
T ss_pred EEEEECcccc
Confidence 4599999765
No 9
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.74 E-value=15 Score=22.07 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.5
Q ss_pred ccccCCCCCCCCHHHH
Q 034357 70 YYRPENRAVEIDPAEL 85 (97)
Q Consensus 70 yy~Pen~~~e~D~ael 85 (97)
+|||++..+.+|..-+
T Consensus 54 hFRp~~i~G~~D~Et~ 69 (81)
T d2bgxa1 54 HFRPTLYNGEADAETQ 69 (81)
T ss_dssp HHCTTCCSSCCBHHHH
T ss_pred HccccccCCcCCHHHH
Confidence 6899999999998644
No 10
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=21.30 E-value=11 Score=21.20 Aligned_cols=18 Identities=28% Similarity=0.074 Sum_probs=15.1
Q ss_pred ccccccCCCCcccccCCC
Q 034357 59 SSAWAPDPITGYYRPENR 76 (97)
Q Consensus 59 ~~~W~pDP~TGyy~Pen~ 76 (97)
+.+|-+||+||-+.+-..
T Consensus 12 ~y~~yr~P~tGk~~~LG~ 29 (49)
T d1z1ba1 12 GYYCYRDPRTGKEFGLGR 29 (49)
T ss_dssp TEEEEECTTTCCEEEEES
T ss_pred CeEEeecCCCCceecCCc
Confidence 467789999999988766
Done!