BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034359
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 13 KPAPFTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGL---DASGRKA 69
KP P ++ A +PS+ + ++ + ++ +D+ + + L+EGL +SG A
Sbjct: 215 KPGPHKIQGIGAGFIPSV--LNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAA 272
Query: 70 KYKF-LNQQPLNSGELFVYI---FGERCL 94
L Q+P N+G+LFV I FGER L
Sbjct: 273 AAAIKLAQRPENAGKLFVAIFPSFGERYL 301
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 13 KPAPFTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGL---DASGRKA 69
KP P ++ A +PS+ + ++ + ++ +D+ + + L+EGL +SG A
Sbjct: 217 KPGPHKIQGIGAGFIPSV--LNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAA 274
Query: 70 KYKF-LNQQPLNSGELFVYI---FGERCL 94
L Q+P N+G+LFV I FGER L
Sbjct: 275 AAAIKLAQRPENAGKLFVAIFPSFGERYL 303
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 13 KPAPFTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGL---DASGRKA 69
KP P ++ A +PS+ + ++ + ++ +D+ + + L+EGL +SG A
Sbjct: 217 KPGPHKIQGIGAGFIPSV--LNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAA 274
Query: 70 KYKF-LNQQPLNSGELFVYI---FGERCL 94
L Q+P N+G+LFV I FGER L
Sbjct: 275 AAAIKLAQRPENAGKLFVAIFPSFGERYL 303
>pdb|3HHS|A Chain A, Crystal Structure Of Manduca Sexta Prophenoloxidase
Length = 694
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 13 KPAPFTVEKSAARGL--PSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGLDASGRK-- 68
K AP V + L P + TS + + GG+ + + ++L +GLD S R
Sbjct: 418 KEAPHNVRPYSRSQLENPGVQVTSVAVESAGGQQNVLNTFWMQSDVNLSKGLDFSDRGPV 477
Query: 69 -AKYKFLNQQPL 79
A++ LN +P
Sbjct: 478 YARFTHLNHRPF 489
>pdb|1V8D|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1679 From Thermus Thermophilus
pdb|1V8D|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1679 From Thermus Thermophilus
pdb|1V8D|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1679 From Thermus Thermophilus
Length = 235
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 51 GVNGGMDLREGLDASGRKAKYKFLNQQPLNSGELFVY------IFGERC 93
G +GGM EG+ + ++A +FL P+ G LFV + GER
Sbjct: 35 GYHGGM---EGIRRAAQRAAEEFLQAFPMAPGSLFVLGGSTSEVLGERV 80
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 16 PFTVEKSAARGLPSLAKTSFKIVAKGGKIKTD 47
P T+E + +G+P L K +F+ ++G I D
Sbjct: 269 PRTIEPAMEKGIPILVKNTFEPESEGTLITND 300
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 16 PFTVEKSAARGLPSLAKTSFKIVAKGGKIKTD 47
P T+E + +G+P L K +F+ ++G I D
Sbjct: 270 PRTIEPAMEKGIPILVKNTFEPESEGTLITND 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,672,446
Number of Sequences: 62578
Number of extensions: 100701
Number of successful extensions: 190
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 7
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)