BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034359
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis
thaliana GN=PSBR PE=1 SV=1
Length = 140
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 70/87 (80%), Gaps = 7/87 (8%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMD 57
MAASVM SS++LKPA FTVEK+AARGLPSL A+ SFKIVA G KIKTDKP+G+NG MD
Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60
Query: 58 LREGLDASGRKAK----YKFLNQQPLN 80
LR+G+DASGRK K YK++++ N
Sbjct: 61 LRDGVDASGRKGKGYGVYKYVDKYGAN 87
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica
campestris GN=PSBR PE=2 SV=1
Length = 141
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 69/88 (78%), Gaps = 8/88 (9%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGM 56
MAASVM SS++LKPA FTVEK +ARGLPSL + +SF+IVA G KIKTDKP+GVNG M
Sbjct: 1 MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60
Query: 57 DLREGLDASGRKAK----YKFLNQQPLN 80
DLR+G+DASGRK K YKF+++ N
Sbjct: 61 DLRDGVDASGRKGKGYGVYKFVDKYGAN 88
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana
tabacum GN=PSBR PE=2 SV=1
Length = 136
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 66/87 (75%), Gaps = 11/87 (12%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMD 57
MA++VM SLKPAPF+VEK+A +GLPSLA++S F++ A G K+KTDKPYG+NG M
Sbjct: 1 MASTVM----SLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMS 56
Query: 58 LREGLDASGRKAK----YKFLNQQPLN 80
LR+G+DASGRK K Y+F+++ N
Sbjct: 57 LRDGVDASGRKQKGKGVYQFVDKYGAN 83
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum
tuberosum GN=PSBR PE=2 SV=1
Length = 138
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 68/87 (78%), Gaps = 9/87 (10%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMD 57
MA++VM SSLSLKP FT+EK++ +GLPSLA++S FK+VA G K+KTDKPYG+NG M
Sbjct: 1 MASTVM-SSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMA 58
Query: 58 LREGLDASGRKAK----YKFLNQQPLN 80
LR+G+DASGRK K Y+++++ N
Sbjct: 59 LRDGVDASGRKPKGKGVYQYVDKYGAN 85
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum
lycopersicum GN=PSBR PE=2 SV=1
Length = 138
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 66/87 (75%), Gaps = 9/87 (10%)
Query: 1 MAASVMASSLSLKPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMD 57
MA++VM SSLSLKP FT+EK + +GLPSL ++S FK+VA G K+KTDKPYG+NG M
Sbjct: 1 MASTVM-SSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMA 58
Query: 58 LREGLDASGRKAK----YKFLNQQPLN 80
LR+G+DASGRK K Y+++++ N
Sbjct: 59 LRDGVDASGRKPKGKGVYQYVDKYGAN 85
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia
oleracea GN=PSBR PE=2 SV=1
Length = 140
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 9/88 (10%)
Query: 1 MAASVMASSLSLKPAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGM 56
MA SVM SSLSLKP+ F V+ KSA +GLPSL+++S F + A G KIK DKP G+ GGM
Sbjct: 1 MATSVM-SSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGM 59
Query: 57 DLREGLDASGR----KAKYKFLNQQPLN 80
LR+G+D+SGR K Y+F+++ N
Sbjct: 60 KLRDGVDSSGRKPTGKGVYQFVDKYGAN 87
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum
vulgare GN=PSBR PE=3 SV=1
Length = 138
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 1 MAASVMASSLSLKPA--PFTVEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVNGGMD 57
M+A VMAS L+LKP+ P +++S G+ A+ S IVAK K ++T +PYG GG+
Sbjct: 1 MSACVMAS-LALKPSSSPL-LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVA 58
Query: 58 LREGLDASGRKAKYKFLNQ 76
+EG+DASGR AK K + Q
Sbjct: 59 FKEGVDASGRVAKGKGVYQ 77
>sp|P47998|CYSK1_ARATH Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2
Length = 322
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 13 KPAPFTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGL---DASGRKA 69
KP P ++ A +PS+ + ++ + ++ +D+ + + L+EGL +SG A
Sbjct: 217 KPGPHKIQGIGAGFIPSV--LNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAA 274
Query: 70 KYKF-LNQQPLNSGELFVYI---FGERCL 94
L Q+P N+G+LFV I FGER L
Sbjct: 275 AAAIKLAQRPENAGKLFVAIFPSFGERYL 303
>sp|Q25519|PRP2_MANSE Phenoloxidase subunit 2 OS=Manduca sexta GN=ppo PE=1 SV=3
Length = 695
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 11 SLKPAPFTVEKSAARGL--PSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGLDASGRK 68
S K AP V + L P + TS + + GG+ + + ++L +GLD S R
Sbjct: 417 SFKEAPHNVRPYSRSQLENPGVQVTSVAVESAGGQQNVLNTFWMQSDVNLSKGLDFSDRG 476
Query: 69 ---AKYKFLNQQPL 79
A++ LN +P
Sbjct: 477 PVYARFTHLNHRPF 490
>sp|P38076|CYSK_WHEAT Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1
Length = 325
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 13 KPAPFTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGL---DASGRKA 69
KP P ++ A +P + I+ + ++ +D+ + + L+EGL +SG A
Sbjct: 221 KPGPHKIQGIGAGFIPGV--LDVDIIDETIQVSSDESIEMAKSLALKEGLLVGISSGAAA 278
Query: 70 KYKF-LNQQPLNSGELFVYI---FGERCL 94
+ Q+P N+G+LFV + FGER L
Sbjct: 279 AAAIKVAQRPENAGKLFVVVFPSFGERYL 307
>sp|Q9XEA6|CYSK1_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2
Length = 321
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 13 KPAPFTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGL---DASGRKA 69
KP P ++ A +P + ++ + ++ +D+ + + L+EGL +SG A
Sbjct: 217 KPGPHKIQGIGAGFVPGV--LDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAA 274
Query: 70 KYKF-LNQQPLNSGELFVYI---FGERCL 94
L Q+P N G+LFV + FGER L
Sbjct: 275 AAAVRLAQRPENEGKLFVVVFPSFGERYL 303
>sp|O23733|CYSK1_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1
Length = 322
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 13 KPAPFTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLREGL---DASGRKA 69
KP P ++ A +PS+ + ++ + ++ +D+ + + L+EGL +SG A
Sbjct: 217 KPGPHKIQGIGAGFIPSVLEVD--LIDEVVQVSSDESIDMARLLALKEGLLVGISSGAAA 274
Query: 70 KYKF-LNQQPLNSGELFVYI---FGERCL 94
L ++P N+G+LFV + FGER L
Sbjct: 275 AAAIKLAKRPENAGKLFVAVFPSFGERYL 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,667,565
Number of Sequences: 539616
Number of extensions: 1344938
Number of successful extensions: 3213
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3197
Number of HSP's gapped (non-prelim): 15
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)