Query 034359
Match_columns 97
No_of_seqs 50 out of 52
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 21:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yd6_A UVRC; DNA binding prote 39.8 16 0.00054 23.9 2.0 19 69-88 13-31 (99)
2 1yd0_A Uvrabc system protein C 32.4 24 0.00083 23.0 2.0 18 69-88 13-30 (96)
3 2rli_A SCO2 protein homolog, m 30.9 16 0.00055 22.6 0.9 14 84-97 29-42 (171)
4 1n0w_B Breast cancer type 2 su 25.7 14 0.00048 21.5 -0.1 12 37-48 9-20 (35)
5 2ggt_A SCO1 protein homolog, m 22.7 22 0.00075 21.7 0.4 14 84-97 26-39 (164)
6 2k6v_A Putative cytochrome C o 21.1 25 0.00085 21.7 0.4 14 84-97 38-51 (172)
7 2wsh_A Endonuclease II; GIY-YI 19.7 54 0.0019 23.4 2.0 16 71-88 40-55 (143)
8 4e51_A Histidine--tRNA ligase; 17.1 24 0.00081 27.8 -0.4 30 61-92 385-418 (467)
9 2wsc_L Photosystem I reaction 16.8 31 0.0011 26.6 0.2 19 33-51 42-63 (216)
10 3qw9_A Transforming growth fac 16.6 66 0.0023 22.5 1.8 22 74-97 105-136 (176)
No 1
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=39.77 E-value=16 Score=23.91 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=14.5
Q ss_pred ccceeeEecccccCceeEEE
Q 034359 69 AKYKFLNQQPLNSGELFVYI 88 (97)
Q Consensus 69 ~KGkGVYqf~dKYGan~~~~ 88 (97)
...-|||+|-|+-|. .+||
T Consensus 13 P~~pGVY~~~d~~g~-vlYV 31 (99)
T 1yd6_A 13 PEQPGCYLMKDKHGT-VIYV 31 (99)
T ss_dssp CSSCEEEEEECSSCC-EEEE
T ss_pred CCCCeEEEEEcCCCC-EEEE
Confidence 345699999999884 5665
No 2
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=32.44 E-value=24 Score=22.96 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=13.0
Q ss_pred ccceeeEecccccCceeEEE
Q 034359 69 AKYKFLNQQPLNSGELFVYI 88 (97)
Q Consensus 69 ~KGkGVYqf~dKYGan~~~~ 88 (97)
+..-|||+|-| .-..+||
T Consensus 13 P~~pGVY~~~d--~g~vlYV 30 (96)
T 1yd0_A 13 PEEPGVYIFKN--KGVPIYI 30 (96)
T ss_dssp CSSCEEEEEEE--TTEEEEE
T ss_pred CCCCeEEEEEC--CCeEEEE
Confidence 34569999999 4446776
No 3
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=30.86 E-value=16 Score=22.62 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=11.5
Q ss_pred eeEEEeccceecCC
Q 034359 84 LFVYIFGERCLPIC 97 (97)
Q Consensus 84 n~~~~~~~~~~~~~ 97 (97)
-+++.+...|-|+|
T Consensus 29 vll~F~~~~C~~~C 42 (171)
T 2rli_A 29 VLMYFGFTHCPDIC 42 (171)
T ss_dssp EEEEEECTTCSSSH
T ss_pred EEEEEEcCCCCchh
Confidence 46777889999988
No 4
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=25.71 E-value=14 Score=21.52 Aligned_cols=12 Identities=42% Similarity=0.490 Sum_probs=9.6
Q ss_pred EEEcCeeeeeec
Q 034359 37 IVAKGGKIKTDK 48 (97)
Q Consensus 37 VvAsg~KIkt~k 48 (97)
-+|||+||++.+
T Consensus 9 hTASGKkv~Iak 20 (35)
T 1n0w_B 9 HTASGKKVKIAK 20 (35)
T ss_dssp EETTSCBCCCCH
T ss_pred eecCCcEEEehH
Confidence 478999888875
No 5
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=22.67 E-value=22 Score=21.72 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=10.9
Q ss_pred eeEEEeccceecCC
Q 034359 84 LFVYIFGERCLPIC 97 (97)
Q Consensus 84 n~~~~~~~~~~~~~ 97 (97)
-+++.+...|-|+|
T Consensus 26 vll~f~~~~C~~~C 39 (164)
T 2ggt_A 26 LLIYFGFTHCPDVC 39 (164)
T ss_dssp EEEEEECTTCSSHH
T ss_pred EEEEEEeCCCCchh
Confidence 46677888998877
No 6
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=21.11 E-value=25 Score=21.67 Aligned_cols=14 Identities=21% Similarity=0.690 Sum_probs=11.1
Q ss_pred eeEEEeccceecCC
Q 034359 84 LFVYIFGERCLPIC 97 (97)
Q Consensus 84 n~~~~~~~~~~~~~ 97 (97)
-+++.+...|-|+|
T Consensus 38 vll~f~~~~C~~~C 51 (172)
T 2k6v_A 38 VLLFFGFTRCPDVC 51 (172)
T ss_dssp EEEEEECTTCSSHH
T ss_pred EEEEEECCCCcchh
Confidence 46777889998877
No 7
>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=19.67 E-value=54 Score=23.37 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=12.6
Q ss_pred ceeeEecccccCceeEEE
Q 034359 71 YKFLNQQPLNSGELFVYI 88 (97)
Q Consensus 71 GkGVYqf~dKYGan~~~~ 88 (97)
-.|||+|.+ ....+||
T Consensus 40 ~~GVY~~~~--~g~ViYV 55 (143)
T 2wsh_A 40 YNVIYAIAI--NDELVYI 55 (143)
T ss_dssp CSEEEEEEE--TTEEEEE
T ss_pred CceEEEEEc--CCeEEEE
Confidence 457999996 6778887
No 8
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=17.11 E-value=24 Score=27.82 Aligned_cols=30 Identities=37% Similarity=0.451 Sum_probs=23.4
Q ss_pred CcCcC----CCcccceeeEecccccCceeEEEeccc
Q 034359 61 GLDAS----GRKAKYKFLNQQPLNSGELFVYIFGER 92 (97)
Q Consensus 61 gvDAs----GRk~KGkGVYqf~dKYGan~~~~~~~~ 92 (97)
-+|.+ +++-+-+ |+++++.|++|+.|.|++
T Consensus 385 e~d~~~~~~~~sl~kq--~~~A~~~g~~~~iiiG~~ 418 (467)
T 4e51_A 385 ILHCSADGAGASFKSQ--MKRADASGAAFAVIFGED 418 (467)
T ss_dssp EECCCTTSSCCCHHHH--HHHHHHTTCSEEEEECHH
T ss_pred EEEcccccccCCHHHH--HHHHHHcCCCEEEEECcc
Confidence 35555 6665544 899999999999999985
No 9
>2wsc_L Photosystem I reaction center subunit XI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_L* 2wsf_L* 2o01_L* 3lw5_L*
Probab=16.82 E-value=31 Score=26.64 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=4.2
Q ss_pred ceeEEEEcCe---eeeeecccc
Q 034359 33 TSFKIVAKGG---KIKTDKPYG 51 (97)
Q Consensus 33 ssf~VvAsg~---KIkt~kP~G 51 (97)
++|+|.|-.. +.+.-|||+
T Consensus 42 ~~~~~~~~~~~~~m~~~I~p~~ 63 (216)
T 2wsc_L 42 TSFTVRAIKTEKPTYQVIQPLN 63 (216)
T ss_dssp -----------CCSSSSCCSSS
T ss_pred cceEEEEEecCCchhhheecCC
Confidence 7888766322 444445553
No 10
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}
Probab=16.62 E-value=66 Score=22.49 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=15.8
Q ss_pred eEecccccCceeEEEe----------ccceecCC
Q 034359 74 LNQQPLNSGELFVYIF----------GERCLPIC 97 (97)
Q Consensus 74 VYqf~dKYGan~~~~~----------~~~~~~~~ 97 (97)
+++|+++ .+.|||. +++|.|-|
T Consensus 105 ~F~Fv~~--~~~VYLHC~v~vC~~~~~~~C~~~C 136 (176)
T 3qw9_A 105 LFKSVFN--TSLLFLHCELTLCSRKKGSLKLPRC 136 (176)
T ss_dssp ECCCCSS--CSEEEEEEEEEEEESSSSSCCSCBC
T ss_pred EEEecCC--CCeEEEEEeeEEECCCCCCcccCCC
Confidence 6777765 4678875 56888877
Done!