BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034360
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7HHM9|URED_ANADF Urease accessory protein UreD OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=ureD PE=3 SV=1
Length = 297
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 14 WVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSE 62
W+ + ++GGG+++GD +S E+ V A+L+TQA TK+Y+S G +S+
Sbjct: 69 WIISASHGGGLLAGDEVSLEVDVGAGAVALLSTQAGTKIYRSRGEVASQ 117
>sp|A9GP79|URED_SORC5 Urease accessory protein UreD OS=Sorangium cellulosum (strain So
ce56) GN=ureD PE=3 SV=2
Length = 312
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 12 AVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEMAVPA 71
A WV+ ++GGG+V GD ++ V A+L+TQASTKVY+S S Q LE V A
Sbjct: 85 AAWVFVASFGGGLVGGDELNLHARVGRGAAALLSTQASTKVYRS--PLVSRQRLEAEVQA 142
>sp|P87125|URED_SCHPO Uncharacterized urease accessory protein ureD-like
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC3A12.09c PE=3 SV=1
Length = 290
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 8 SETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSL-GSKSSEQILE 66
++ D +Y ++YGGG+VSGD ++ +I V T + +Q +TK+YK + G +++Q L+
Sbjct: 35 TKLDFSILYIMSYGGGLVSGDRVALDIIVGKNATLCIQSQGNTKLYKQIPGKPATQQKLD 94
Query: 67 MAV 69
+ V
Sbjct: 95 VEV 97
>sp|O30332|URED_CUPNH Urease accessory protein UreD OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=ureD PE=3 SV=1
Length = 289
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 23 GIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI 64
G+ GDS+ ++TV D AVL T +TK YKSLG ++++ +
Sbjct: 65 GVAGGDSLDIDVTVEDGAHAVLATPGATKWYKSLGREAAQHV 106
>sp|P17089|URED_PROMH Urease accessory protein UreD OS=Proteus mirabilis (strain HI4320)
GN=ureD PE=1 SV=1
Length = 274
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSE 62
P+ G + T Y L GG+V GD++S I V A+LTT +TK Y+S G +S+
Sbjct: 43 PEQGVAHT-----YLLHPPGGVVGGDTLSININVQPYAHALLTTPGATKFYRSAGGTASQ 97
Query: 63 -QILEMAVPAIVE 74
Q L +A +E
Sbjct: 98 TQTLTVAQEGFLE 110
>sp|Q9FAS8|URED_VIBPH Urease accessory protein UreD OS=Vibrio parahaemolyticus GN=ureD
PE=3 SV=1
Length = 280
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLG 57
P+ GSS T Y L GG+V+GD +S + V + +++TT +TK Y+S+G
Sbjct: 45 PEHGSSHT-----YLLHPPGGVVAGDLLSINVVVEEGAHSLITTPGATKFYRSIG 94
>sp|A6WVQ8|URED1_OCHA4 Urease accessory protein UreD 1 OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=ureD1 PE=3 SV=1
Length = 283
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
PQVG +A+ + T GG+ GD + ++ + + +AV+TTQA ++Y+S G ++
Sbjct: 47 PQVGGDPLEAILINT---SGGLTGGDRLQWDVELGENASAVITTQACERIYRSGGGEA 101
>sp|Q9Z364|URED_ACTNA Urease accessory protein UreD OS=Actinomyces naeslundii GN=ureD
PE=3 SV=1
Length = 271
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 10 TDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKS 55
T V Y + GGG + GDS E+ V +AVLTTQA+TK+Y++
Sbjct: 40 TGQVAYYVVNPGGGYLDGDSYLTEVEVLQGASAVLTTQAATKIYRT 85
>sp|Q5E725|URED_VIBF1 Urease accessory protein UreD OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=ureD PE=3 SV=1
Length = 287
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 9 ETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSE 62
ET Y L GG+V GD ++ I V+ ++LTT +TK Y+S G+ SS+
Sbjct: 46 ETGIAHTYLLHPPGGVVGGDQLNINIHVSPQAHSLLTTPGATKFYRSSGATSSQ 99
>sp|Q56562|URED_UREPA Urease accessory protein UreD OS=Ureaplasma parvum serovar 3
(strain ATCC 700970) GN=ureD PE=3 SV=2
Length = 287
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 17 TLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQ 63
T++ GGG VSG+ + + D ++TTQ+S K YK++ K+SEQ
Sbjct: 58 TISMGGGYVSGEIYRSDFEINDDARCIITTQSSAKAYKTVDGKTSEQ 104
>sp|B1AJ69|URED_UREP2 Urease accessory protein UreD OS=Ureaplasma parvum serovar 3
(strain ATCC 27815 / 27 / NCTC 11736) GN=ureD PE=3 SV=1
Length = 287
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 17 TLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQ 63
T++ GGG VSG+ + + D ++TTQ+S K YK++ K+SEQ
Sbjct: 58 TISMGGGYVSGEIYRSDFEINDDARCIITTQSSAKAYKTVDGKTSEQ 104
>sp|B5FBC9|URED_VIBFM Urease accessory protein UreD OS=Vibrio fischeri (strain MJ11)
GN=ureD PE=3 SV=1
Length = 287
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 9 ETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSE 62
ET Y L GG+V GD ++ I V+ ++LTT +TK Y+S G+ SS+
Sbjct: 46 ETGVAHTYLLHPPGGVVGGDQLNINIHVSPQAHSLLTTPGATKFYRSSGAISSQ 99
>sp|A1U501|URED_MARAV Urease accessory protein UreD OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=ureD PE=3 SV=1
Length = 298
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKS 55
P +T VY L GG+VSGD + E TVA+ A+LTT A+ K+YK+
Sbjct: 58 PFYPEGKTGCCHVYLLHPPGGLVSGDELRIEATVAEGGHALLTTPAAAKLYKA 110
>sp|Q1QCE3|URED1_PSYCK Urease accessory protein UreD 1 OS=Psychrobacter cryohalolentis
(strain K5) GN=ureD1 PE=3 SV=1
Length = 302
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 15 VYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKS 55
VY L GGI SGDS++ ++TV++ A+LTT A+ K+Y++
Sbjct: 74 VYLLHPPGGIASGDSLTIDVTVSENAHALLTTPAANKLYRA 114
>sp|A9KJR5|URED_CLOPH Urease accessory protein UreD OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=ureD PE=3
SV=1
Length = 274
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 1 MNPQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKS 55
MNP +++ A + Y + GGG V GD+ +I +A +LTTQ+++K+YK+
Sbjct: 33 MNPFYLNNDEQACF-YIMNPGGGYVDGDTYRMDIHLAKEAQLLLTTQSASKIYKT 86
>sp|A0K579|URED_BURCH Urease accessory protein UreD OS=Burkholderia cenocepacia (strain
HI2424) GN=ureD PE=3 SV=1
Length = 291
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI 64
GG+ GD + +I + D AVLTT +TK YKS G ++++I
Sbjct: 68 GGVAGGDRLDIDIALGDGTHAVLTTPGATKWYKSNGLDATQRI 110
>sp|Q1BYG9|URED_BURCA Urease accessory protein UreD OS=Burkholderia cenocepacia (strain
AU 1054) GN=ureD PE=3 SV=1
Length = 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI 64
GG+ GD + +I + D AVLTT +TK YKS G ++++I
Sbjct: 68 GGVAGGDRLDIDIALGDGTHAVLTTPGATKWYKSNGLDATQRI 110
>sp|A4JC45|URED_BURVG Urease accessory protein UreD OS=Burkholderia vietnamiensis (strain
G4 / LMG 22486) GN=ureD PE=3 SV=1
Length = 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI 64
GG+ GD + +I + D AVLTT +TK YKS G ++++I
Sbjct: 68 GGVAGGDRLDLDIALGDGTHAVLTTPGATKWYKSNGLDATQRI 110
>sp|Q39IW0|URED_BURS3 Urease accessory protein UreD OS=Burkholderia sp. (strain 383)
GN=ureD PE=3 SV=1
Length = 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI 64
GG+ GD + +I + D AVLTT +TK YKS G ++++I
Sbjct: 68 GGVAGGDRLDIDIALGDGTHAVLTTPGATKWYKSNGLDATQRI 110
>sp|Q88J07|URED_PSEPK Urease accessory protein UreD OS=Pseudomonas putida (strain KT2440)
GN=ureD PE=3 SV=1
Length = 277
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 15 VYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
VY L GGIV+GD + +I + A+LT ++K Y+S+G +
Sbjct: 57 VYVLHPPGGIVAGDRLELDIHLEPGSHALLTMPGASKFYRSIGPTA 102
>sp|A5W4B9|URED_PSEP1 Urease accessory protein UreD OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=ureD PE=3 SV=1
Length = 278
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 15 VYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
VY L GGIV+GD + +I + A+LT ++K Y+S+G +
Sbjct: 58 VYVLHPPGGIVAGDRLELDIHLEPGSHALLTMPGASKFYRSIGPTA 103
>sp|B1J812|URED_PSEPW Urease accessory protein UreD OS=Pseudomonas putida (strain W619)
GN=ureD PE=3 SV=1
Length = 277
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 15 VYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGS 58
VY L GGIV+GD + +I + A+LT ++K Y+S+G
Sbjct: 57 VYVLHPPGGIVAGDRLELDIHLEPGSHALLTMPGASKFYRSIGP 100
>sp|Q1IBP3|URED_PSEE4 Urease accessory protein UreD OS=Pseudomonas entomophila (strain
L48) GN=ureD PE=3 SV=1
Length = 277
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 15 VYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSS 61
VY L GGIV+GD + +I + A+LT ++K Y+S+G +
Sbjct: 57 VYVLHPPGGIVAGDRLELDIHLEAGSHALLTMPGASKFYRSIGPTAH 103
>sp|Q0BHN2|URED_BURCM Urease accessory protein UreD OS=Burkholderia ambifaria (strain
ATCC BAA-244 / AMMD) GN=ureD PE=3 SV=1
Length = 291
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI 64
GG+ GD + I + D AVLTT +TK YKS G ++++I
Sbjct: 68 GGVAGGDQLDIGIALGDGTHAVLTTPGATKWYKSNGLDATQRI 110
>sp|B0KV00|URED_PSEPG Urease accessory protein UreD OS=Pseudomonas putida (strain GB-1)
GN=ureD PE=3 SV=1
Length = 277
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 15 VYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGS 58
VY L GGIV+GD + I + A+LT ++K Y+S+G
Sbjct: 57 VYVLHPPGGIVAGDRLELNIHLEPGSHALLTMPGASKFYRSIGP 100
>sp|P0CB03|URED_UREUR Urease accessory protein UreD OS=Ureaplasma urealyticum GN=ureD
PE=3 SV=1
Length = 287
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 17 TLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQ 63
T++ GGG VSG+ + V ++TTQ+S K YK++ K+SEQ
Sbjct: 58 TISMGGGYVSGEVYRSDFEVEANARCIITTQSSAKAYKAVDGKTSEQ 104
>sp|B5ZBS5|URED_UREU1 Urease accessory protein UreD OS=Ureaplasma urealyticum serovar 10
(strain ATCC 33699 / Western) GN=ureD PE=3 SV=1
Length = 287
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 17 TLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQ 63
T++ GGG VSG+ + V ++TTQ+S K YK++ K+SEQ
Sbjct: 58 TISMGGGYVSGEVYRSDFEVEANARCIITTQSSAKAYKAVDGKTSEQ 104
>sp|B1Y3W7|URED_LEPCP Urease accessory protein UreD OS=Leptothrix cholodnii (strain
ATCC 51168 / LMG 8142 / SP-6) GN=ureD PE=3 SV=1
Length = 278
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI 64
GGIV GD++ ++ +A A++TT +T+ Y+S G + +Q+
Sbjct: 53 GGIVGGDTLEVDLDLAPGSHALITTPGATRYYRSAGEVARQQV 95
>sp|B0C790|URED_ACAM1 Urease accessory protein UreD OS=Acaryochloris marina (strain MBIC
11017) GN=ureD PE=3 SV=1
Length = 283
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI-LEMAVPAIVEERGVAS 80
GG+V GD +S +T+ A+LTT ++ KVY+S G + + + ++ AI+E + +
Sbjct: 61 GGMVGGDRLSINVTLQPQTHALLTTTSAGKVYRSNGHGAQQTVQCQLDTNAILEWLPLGT 120
Query: 81 F-FDQQKEKK 89
FDQ + ++
Sbjct: 121 IVFDQAQFRQ 130
>sp|A0L6E9|URED_MAGSM Urease accessory protein UreD OS=Magnetococcus sp. (strain MC-1)
GN=ureD PE=3 SV=1
Length = 289
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 19 TYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI-LEMAVPAIVEERG 77
T GG+V GD + E+ ++ TQA+ KVY+S G+ S+ QI L + A +E
Sbjct: 62 TTSGGLVGGDQLDIELIARPHTQLLVMTQAAEKVYRSTGADSTVQIALHVEAGAFLEWLP 121
Query: 78 VAS-FFDQQKEKK 89
+ FDQ + ++
Sbjct: 122 QETILFDQGRLRR 134
>sp|Q8G2Q1|URED1_BRUSU Urease accessory protein UreD 1 OS=Brucella suis biovar 1 (strain
1330) GN=ureD1 PE=3 SV=1
Length = 280
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
PQ + +A+ + T GG+ GD + ++ + D +AV+TTQA ++Y+S G ++
Sbjct: 48 PQAVTGPLEAILINT---SGGLTGGDRLKWDVALDDGASAVITTQACERIYRSGGGEA 102
>sp|A5VNL0|URED1_BRUO2 Urease accessory protein UreD 1 OS=Brucella ovis (strain ATCC 25840
/ 63/290 / NCTC 10512) GN=ureD1 PE=3 SV=1
Length = 280
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
PQ + +A+ + T GG+ GD + ++ + D +AV+TTQA ++Y+S G ++
Sbjct: 48 PQAVTGPLEAILINT---SGGLTGGDRLKWDVALDDGASAVITTQACERIYRSGGGEA 102
>sp|A9M7V2|URED1_BRUC2 Urease accessory protein UreD 1 OS=Brucella canis (strain ATCC
23365 / NCTC 10854) GN=ureD1 PE=3 SV=1
Length = 280
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
PQ + +A+ + T GG+ GD + ++ + D +AV+TTQA ++Y+S G ++
Sbjct: 48 PQAVTGPLEAILINT---SGGLTGGDRLKWDVALDDGASAVITTQACERIYRSGGGEA 102
>sp|B0CJP3|URED_BRUSI Urease accessory protein UreD OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=ureD PE=3 SV=2
Length = 279
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
PQ + +A+ + T GG+ GD + ++ + D +AV+TTQA ++Y+S G ++
Sbjct: 47 PQAVTGPLEAILINT---SGGLTGGDRLKWDVALDDGASAVITTQACERIYRSGGGEA 101
>sp|Q57F88|URED1_BRUAB Urease accessory protein UreD 1 OS=Brucella abortus biovar 1
(strain 9-941) GN=ureD1 PE=3 SV=1
Length = 280
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
PQ + +A+ + T GG+ GD + ++ + D +AV+TTQA ++Y+S G ++
Sbjct: 48 PQAVTGPLEAILINT---SGGLTGGDRLKWDVALDDGASAVITTQACERIYRSGGGEA 102
>sp|Q2YPD8|URED1_BRUA2 Urease accessory protein UreD 1 OS=Brucella abortus (strain 2308)
GN=ureD1 PE=3 SV=1
Length = 280
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
PQ + +A+ + T GG+ GD + ++ + D +AV+TTQA ++Y+S G ++
Sbjct: 48 PQAVTGPLEAILINT---SGGLTGGDRLKWDVALDDGASAVITTQACERIYRSGGGEA 102
>sp|Q8YF70|URED1_BRUME Urease accessory protein UreD 1 OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=ureD1 PE=3
SV=2
Length = 280
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
PQ + +A+ + T GG+ GD + ++ + D +AV+TTQA ++Y+S G ++
Sbjct: 48 PQAVTGPLEAILINT---SGGLTGGDRLKWDVALDDGASAVITTQACERIYRSGGGEA 102
>sp|Q9KG55|URED_BACHD Urease accessory protein UreD OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=ureD PE=3 SV=1
Length = 271
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 7 SSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSL--GSKSSEQI 64
+ E D VY + GG+VSGDS + I V + L Q++TKVY S G S++Q+
Sbjct: 44 TEEVDLATVYLVETSGGVVSGDSQTIAIYVGEGARVELIPQSATKVYPSRKQGESSTQQV 103
>sp|Q4A0J9|URED_STAS1 Urease accessory protein UreD OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=ureD PE=3 SV=1
Length = 280
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 MNPQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSK 59
M P V +++D Y + GGG + GD + + +LT+Q +TK+YK+L
Sbjct: 37 MRP-VYLNQSDIPTFYIVNVGGGYLDGDRYTMNFNIDSDAKVILTSQGATKIYKTLNDH 94
>sp|B0TT68|URED_SHEHH Urease accessory protein UreD OS=Shewanella halifaxensis (strain
HAW-EB4) GN=ureD PE=3 SV=1
Length = 305
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 9 ETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS-SEQILEM 67
E A Y L GG+V GD +S I V A+LTT +TK Y+S G ++ Q L +
Sbjct: 53 EGAACHTYLLHPPGGVVGGDQLSFNIDVGTQAHALLTTPGATKFYRSNGEQAWQSQELTV 112
Query: 68 AVPAIVE 74
A ++E
Sbjct: 113 AKDGLLE 119
>sp|Q89UG4|URED_BRAJA Urease accessory protein UreD OS=Bradyrhizobium japonicum (strain
USDA 110) GN=ureD PE=3 SV=1
Length = 276
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI 64
GG+ GD EI+ ADA LTT A+ KVY++ G + I
Sbjct: 64 GGVAGGDRFDVEISAADAARLTLTTAAAEKVYRAPGPAAELNI 106
>sp|A9AZE9|URED_HERA2 Urease accessory protein UreD OS=Herpetosiphon aurantiacus (strain
ATCC 23779 / DSM 785) GN=ureD PE=3 SV=1
Length = 287
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 15 VYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEMAVPAIVE 74
V+ GG+++GD ++ I +A + A LTT +ST++Y+S G EQI V A +
Sbjct: 51 VHLHNVAGGVLAGDQLTTTIKLAASTKAQLTTTSSTRIYRSDG----EQIAYQQVQATLA 106
Query: 75 ERGVASFF 82
E+ + ++
Sbjct: 107 EQSLLEYW 114
>sp|Q11VN0|URED_CYTH3 Urease accessory protein UreD OS=Cytophaga hutchinsonii (strain
ATCC 33406 / NCIMB 9469) GN=ureD PE=3 SV=1
Length = 285
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 19 TYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQIL 65
YGGG V GDSI I + ++QA+T++Y+S K+ +Q +
Sbjct: 47 NYGGGFVEGDSIDLTIDCKADTVSAFSSQANTRIYRSEHGKTCKQTI 93
>sp|Q07400|URED_BACSB Urease accessory protein UreD OS=Bacillus sp. (strain TB-90)
GN=ureD PE=3 SV=1
Length = 271
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 9 ETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKS 55
E D ++Y + GGG V GD + V + +TTQ++TKVYK+
Sbjct: 38 EKDLPFLYLIHVGGGYVDGDVYLTNLDVEEEAELAVTTQSATKVYKT 84
>sp|Q1LPT3|URED_RALME Urease accessory protein UreD OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=ureD PE=3 SV=1
Length = 293
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI 64
G+ GD + +I VA AVL T +TK YKSLG +++ +
Sbjct: 64 AGVAGGDRLDIDIAVASGAHAVLATPGATKWYKSLGRDAAQHV 106
>sp|Q03285|URED_ECOLX Urease accessory protein UreD OS=Escherichia coli GN=ureD PE=2 SV=1
Length = 278
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 3 PQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSE 62
P+ G + T Y L GG+V GD + I V A+LTT +TK Y+S G + +
Sbjct: 43 PEQGIAHT-----YLLHPPGGVVGGDKLLINIDVQPHAHALLTTPGATKFYRSAGGVARQ 97
Query: 63 -QILEMAVPAIVE 74
Q L +A +E
Sbjct: 98 VQTLTVAPNGFLE 110
>sp|A8APU7|URED_CITK8 Urease accessory protein UreD OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=ureD PE=3 SV=1
Length = 285
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 8 SETDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKS 60
E D +Y L GGIV GD ++ T+A A++T S K Y+S G ++
Sbjct: 58 PEDDVCHLYLLHPPGGIVGGDELTISATLATDSHALITQPGSGKFYRSRGPQA 110
>sp|A9BUC8|URED_DELAS Urease accessory protein UreD OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=ureD PE=3 SV=1
Length = 305
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 22 GGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQI-LEMAVPAIVE 74
GG+ GD + ++TV A+LTT +T+ YKS G +++++ L + AI+E
Sbjct: 67 GGVAGGDQLQIDVTVEPGAHALLTTPGATRWYKSQGRPAAQRVRLRVEEGAILE 120
>sp|Q1QV50|URED_CHRSD Urease accessory protein UreD OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=ureD
PE=3 SV=1
Length = 313
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 15 VYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKS 55
VY L GG+VSGD + +I A+LTT A+TK+Y++
Sbjct: 85 VYLLHPPGGLVSGDELRIDIEAESGAHALLTTPAATKLYRA 125
>sp|Q3IH71|URED_PSEHT Urease accessory protein UreD OS=Pseudoalteromonas haloplanktis
(strain TAC 125) GN=ureD PE=3 SV=1
Length = 302
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 15 VYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKS 55
VY L GG+VSGD+++ +I++ +++TT A+ K+YK+
Sbjct: 74 VYLLHPPGGVVSGDALNIDISLTKGAHSLITTPAANKLYKA 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.123 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,371,692
Number of Sequences: 539616
Number of extensions: 937367
Number of successful extensions: 3223
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3041
Number of HSP's gapped (non-prelim): 198
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)