Query 034360
Match_columns 97
No_of_seqs 116 out of 644
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 21:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sf5_B Urease accessory protei 99.9 1.7E-26 5.8E-31 175.2 10.5 74 10-88 43-116 (265)
2 2k6w_A Putative uncharacterize 85.5 2.5 8.5E-05 28.0 5.9 36 10-45 79-114 (120)
3 1x9l_A CUI-DR1885; copper bind 76.4 3.1 0.00011 28.5 4.0 36 10-45 104-139 (149)
4 3sf5_B Urease accessory protei 69.5 21 0.00071 26.3 7.4 62 13-82 73-139 (265)
5 1acx_A Actinoxanthin; antibact 62.0 13 0.00045 24.6 4.4 30 16-46 4-33 (108)
6 4dn7_A ABC transporter, ATP-bi 50.0 92 0.0031 24.5 9.2 20 27-46 178-197 (429)
7 2vvf_A Major capsid protein P2 48.5 23 0.00079 26.7 4.4 31 24-54 108-145 (269)
8 1vh4_A SUFD protein; structura 43.6 1.2E+02 0.0039 23.8 9.3 20 26-45 169-188 (435)
9 1vh4_A SUFD protein; structura 41.9 94 0.0032 24.3 7.2 43 32-83 205-247 (435)
10 4eb5_C NIFU protein (NIFU-1); 39.0 21 0.00072 24.5 2.7 36 1-39 11-46 (153)
11 2xsk_A CSGC; chaperone; 1.70A 38.4 20 0.00068 23.7 2.3 26 24-49 71-96 (110)
12 2z7e_A ISCU protein, NIFU-like 35.8 35 0.0012 23.4 3.4 33 1-37 14-47 (157)
13 3lvl_A NIFU-like protein; prot 33.8 21 0.00073 23.5 2.0 38 1-39 13-52 (129)
14 2l55_A SILB,silver efflux prot 33.0 56 0.0019 19.9 3.7 25 21-45 45-69 (82)
15 4fxk_C Complement C4 gamma cha 31.5 42 0.0014 25.2 3.5 47 34-91 222-268 (291)
16 2qq4_A Iron-sulfur cluster bio 31.0 32 0.0011 22.8 2.5 35 1-39 17-52 (138)
17 2vb2_X Copper protein, cation 26.9 68 0.0023 19.7 3.4 23 22-45 60-82 (88)
18 2qcp_X Cation efflux system pr 26.3 73 0.0025 19.2 3.4 23 22-45 52-74 (80)
19 1z9l_A Vesicle-associated memb 25.2 64 0.0022 20.6 3.1 25 15-39 54-79 (128)
20 1xjs_A NIFU-like protein; SR17 23.1 46 0.0016 22.3 2.1 34 1-39 20-54 (147)
21 2k7q_A Filamin-A; IG-like, ABP 22.1 1.2E+02 0.0042 20.3 4.3 24 23-46 1-25 (191)
22 2oct_A Cystatin B; stefin, amy 22.0 83 0.0028 19.5 3.1 31 21-57 44-74 (98)
23 1mvf_D MAZE protein, PEMI-like 21.3 1E+02 0.0035 18.0 3.3 21 23-46 26-46 (82)
24 3qml_C Protein SLS1, nucleotid 20.8 8.7 0.0003 29.7 -2.1 21 75-95 256-276 (315)
25 2cri_A Vesicle-associated memb 20.7 91 0.0031 20.5 3.3 25 15-39 58-83 (147)
No 1
>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori}
Probab=99.94 E-value=1.7e-26 Score=175.16 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCcEEEEEEccCCcccCCceEEEEEEECCCcEEEEeCcccceeeecCCCCcceEEEEeeeceeeCCCceEEEechhhhh
Q 034360 10 TDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEMAVPAIVEERGVASFFDQQKEK 88 (97)
Q Consensus 10 ~~~~~vyl~~~sGGl~~GD~l~i~i~v~~ga~l~lTTQaAtKvy~~~~~~~s~Q~~~v~v~~~ve~gA~Le~lP~~~~~ 88 (97)
++.+++||+|++||+++||+++++|+|++||+++||||||||||+|.++. ++|++++ +|++||+|||+|||+|-
T Consensus 43 ~~~~~v~ll~~~gGl~gGD~l~i~i~v~~ga~~~ltTqaatkvy~~~~~~-a~q~~~~----~v~~ga~Le~lP~p~I~ 116 (265)
T 3sf5_B 43 DDLAEIMLLAVSPGMMRGDAQDVQLNIGPNCKLRITSQSFEKIHNTEDGF-ASRDMHI----VVGENAFLDFAPFPLIP 116 (265)
T ss_dssp TTCEEEEEEECCSCBCTTCEEEEEEEECTTCEEEEECCCCEEECCCTTSC-EEEEEEE----EECTTCEEEECCCCEEE
T ss_pred CCcEEEEEEcCCCCCcCCCEEEEEEEECCCCEEEEECcccceEEcCCCCc-EEEEEEE----EECCCCEEEecCCCcEe
Confidence 45799999999999999999999999999999999999999999999875 7788888 69999999999999874
No 2
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=85.48 E-value=2.5 Score=28.01 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=32.0
Q ss_pred CCcEEEEEEccCCcccCCceEEEEEEECCCcEEEEe
Q 034360 10 TDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLT 45 (97)
Q Consensus 10 ~~~~~vyl~~~sGGl~~GD~l~i~i~v~~ga~l~lT 45 (97)
|+-.|++|+....-|-.||.+.+.++.+.+..+.++
T Consensus 79 PGG~HvML~gl~~~l~~G~~v~ltL~Fe~~~~v~v~ 114 (120)
T 2k6w_A 79 PGGYHFMLLGLKRPLKAGEEVELDLLFAGGKVLKVV 114 (120)
T ss_dssp TTTEEEEEEEESSCBCTTCEEEEEEEETTTEEEEEE
T ss_pred CCceEEEEeCCCCCCCCCCEEEEEEEECCCCeEEEE
Confidence 566799999999999999999999999998887764
No 3
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=76.38 E-value=3.1 Score=28.54 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCcEEEEEEccCCcccCCceEEEEEEECCCcEEEEe
Q 034360 10 TDAVWVYTLTYGGGIVSGDSISCEITVADACTAVLT 45 (97)
Q Consensus 10 ~~~~~vyl~~~sGGl~~GD~l~i~i~v~~ga~l~lT 45 (97)
|+-.|++|+....-|-.||.+.+.++.+.+..+.++
T Consensus 104 PGG~HvML~gL~~~l~~G~~v~lTL~Fe~~g~v~v~ 139 (149)
T 1x9l_A 104 RDGDHVMLMGLKRPLKVGETVNITLKATDGRTLNVA 139 (149)
T ss_dssp TTSSEEEEEEECSCCCTTEEEEEEECBTTTCCEEEE
T ss_pred CCceEEEEeCCCCCCCCCCEEEEEEEECCCCeEEEE
Confidence 455699999999999999999999999988777664
No 4
>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori}
Probab=69.55 E-value=21 Score=26.26 Aligned_cols=62 Identities=5% Similarity=-0.062 Sum_probs=41.3
Q ss_pred EEEEEEccCCccc---CC--ceEEEEEEECCCcEEEEeCcccceeeecCCCCcceEEEEeeeceeeCCCceEEEe
Q 034360 13 VWVYTLTYGGGIV---SG--DSISCEITVADACTAVLTTQASTKVYKSLGSKSSEQILEMAVPAIVEERGVASFF 82 (97)
Q Consensus 13 ~~vyl~~~sGGl~---~G--D~l~i~i~v~~ga~l~lTTQaAtKvy~~~~~~~s~Q~~~v~v~~~ve~gA~Le~l 82 (97)
+++.|.+.+..-+ .| =+.+++|+|++||.+..-.|- +.+| .+..-.|.++| .|+++|.|-|.
T Consensus 73 a~~~ltTqaatkvy~~~~~~a~q~~~~~v~~ga~Le~lP~p-~I~f---~~a~~~~~~~v----~L~~~A~l~~~ 139 (265)
T 3sf5_B 73 CKLRITSQSFEKIHNTEDGFASRDMHIVVGENAFLDFAPFP-LIPF---ENAHFKGNTTI----SLRSSSQLLYS 139 (265)
T ss_dssp CEEEEECCCCEEECCCTTSCEEEEEEEEECTTCEEEECCCC-EEEC---TTCEEEEEEEE----EECTTCEEEEE
T ss_pred CEEEEECcccceEEcCCCCcEEEEEEEEECCCCEEEecCCC-cEec---CCCEEEEEEEE----EECCCCEEEEE
Confidence 3455555544433 12 268999999999999998774 5555 22224577777 58999987664
No 5
>1acx_A Actinoxanthin; antibacterial protein; 2.00A {Streptomyces globisporus} SCOP: b.1.7.1 PDB: 1hzk_A 1hzl_A* 1j48_A
Probab=62.02 E-value=13 Score=24.56 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=26.9
Q ss_pred EEEccCCcccCCceEEEEEEECCCcEEEEeC
Q 034360 16 YTLTYGGGIVSGDSISCEITVADACTAVLTT 46 (97)
Q Consensus 16 yl~~~sGGl~~GD~l~i~i~v~~ga~l~lTT 46 (97)
.-++++.||-+|+.+++.. +-+|..++|.-
T Consensus 4 isvsPstGLsDgqtVtVs~-~t~g~~~~v~q 33 (108)
T 1acx_A 4 FSVSPASGASDGQSVSVSV-AAAGETYYIAQ 33 (108)
T ss_dssp EEEECCSSCCSSCEEEEEE-ESCCSEEEEEE
T ss_pred eEecCCCCCCCCCEEEEEE-ecCCCEEEEEE
Confidence 3478999999999999999 99999998874
No 6
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=50.01 E-value=92 Score=24.49 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.1
Q ss_pred CceEEEEEEECCCcEEEEeC
Q 034360 27 GDSISCEITVADACTAVLTT 46 (97)
Q Consensus 27 GD~l~i~i~v~~ga~l~lTT 46 (97)
+...+.-|.+++||.+.+..
T Consensus 178 ~~~~r~lIi~eegA~v~iie 197 (429)
T 4dn7_A 178 AQTVHNIIIVEEGATLDIIT 197 (429)
T ss_dssp EEEEEEEEEECTTCEEEEEE
T ss_pred ceeeeEEEEECCCCEEEEEE
Confidence 45667889999999998763
No 7
>2vvf_A Major capsid protein P2; double jelly-roll viral capsid, viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB: 2w0c_A
Probab=48.52 E-value=23 Score=26.74 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=24.7
Q ss_pred ccCCceEEEEEEECCCc-------EEEEeCcccceeee
Q 034360 24 IVSGDSISCEITVADAC-------TAVLTTQASTKVYK 54 (97)
Q Consensus 24 l~~GD~l~i~i~v~~ga-------~l~lTTQaAtKvy~ 54 (97)
...||.+.++|++.+|| .++++-..+.+||+
T Consensus 108 T~~g~~~~vEv~I~a~a~ap~l~a~A~~s~~q~~ri~~ 145 (269)
T 2vvf_A 108 TVGLTTCEIKFDIDEAAAGPKLSAIAQKSVGTAPSWLT 145 (269)
T ss_dssp CTTCSCEEEEEEECTTCSSCEEEEEEEEESCCCSCEEE
T ss_pred cccCcEEEEEEEEcccCCCCeeEEEEEEcCCCCCeeEE
Confidence 34789999999999887 67788766767774
No 8
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=43.55 E-value=1.2e+02 Score=23.76 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=15.5
Q ss_pred CCceEEEEEEECCCcEEEEe
Q 034360 26 SGDSISCEITVADACTAVLT 45 (97)
Q Consensus 26 ~GD~l~i~i~v~~ga~l~lT 45 (97)
.+...+..|.+++||.+.+-
T Consensus 169 ~~~~~r~lIi~eegs~v~ii 188 (435)
T 1vh4_A 169 NTAHYRHHLDLAEGAEATVI 188 (435)
T ss_dssp EEEEEEEEEEECTTCEEEEE
T ss_pred ceeeeEEEEEECCCCEEEEE
Confidence 34566788999999999755
No 9
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=41.92 E-value=94 Score=24.27 Aligned_cols=43 Identities=12% Similarity=-0.065 Sum_probs=26.3
Q ss_pred EEEEECCCcEEEEeCcccceeeecCCCCcceEEEEeeeceeeCCCceEEEec
Q 034360 32 CEITVADACTAVLTTQASTKVYKSLGSKSSEQILEMAVPAIVEERGVASFFD 83 (97)
Q Consensus 32 i~i~v~~ga~l~lTTQaAtKvy~~~~~~~s~Q~~~v~v~~~ve~gA~Le~lP 83 (97)
++|.+++||++..++ |+.-..+.....+.+ +.++++|.++|.-
T Consensus 205 ~ei~v~~~A~l~~~~-----vq~~~~~~~~~~~~~----~~~~~~a~~~~~~ 247 (435)
T 1vh4_A 205 FTINVAANAHLQHIK-----LAFENPLSHHFAHND----LLLAEDATAFSHS 247 (435)
T ss_dssp EEEEECTTCEEEEEE-----EECCCTTCEEEEEEE----EEECTTCEEEEEE
T ss_pred EEEEECCCCEEEEEE-----EEecCCCeEEEEEEE----EEECCCCEEEEEE
Confidence 578999999999874 333222211111222 3688899888864
No 10
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=39.03 E-value=21 Score=24.51 Aligned_cols=36 Identities=31% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCcEEEEEEccCCcccCCceEEEEEEECCC
Q 034360 1 MNPQVGSSETDAVWVYTLTYGGGIVSGDSISCEITVADA 39 (97)
Q Consensus 1 ~~~~~~p~~~~~~~vyl~~~sGGl~~GD~l~i~i~v~~g 39 (97)
+|||-....++.-. ....+...-||.+++.+.++.|
T Consensus 11 ~nPrn~G~l~~~d~---~~~~~nP~CGD~i~l~lkv~d~ 46 (153)
T 4eb5_C 11 QNPRNVGKIEDADG---VGTVGNPVCGDLMTIYIKVKDN 46 (153)
T ss_dssp HSCSSBSCCSSCSE---EEEEECTTTCCEEEEEEEESSS
T ss_pred hCCCCCCCCCCCCe---EEEeCCCCCCCEEEEEEEecCC
Confidence 37887665443211 2235566789999999999877
No 11
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=38.44 E-value=20 Score=23.73 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.0
Q ss_pred ccCCceEEEEEEECCCcEEEEeCccc
Q 034360 24 IVSGDSISCEITVADACTAVLTTQAS 49 (97)
Q Consensus 24 l~~GD~l~i~i~v~~ga~l~lTTQaA 49 (97)
+..||.+.|.|+|-+|-.++|+-|=.
T Consensus 71 I~~~D~vkIiVTVSDG~slhLsqQw~ 96 (110)
T 2xsk_A 71 ISPDDRVKIVVTVSDGQSLHLSQQWP 96 (110)
T ss_dssp CCTTCEEEEEEEEECSSSCEEEEEEC
T ss_pred ecCCCcEEEEEEEeCCCeEEEEeccC
Confidence 56799999999999999999986633
No 12
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=35.79 E-value=35 Score=23.38 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCc-EEEEEEccCCcccCCceEEEEEEEC
Q 034360 1 MNPQVGSSETDA-VWVYTLTYGGGIVSGDSISCEITVA 37 (97)
Q Consensus 1 ~~~~~~p~~~~~-~~vyl~~~sGGl~~GD~l~i~i~v~ 37 (97)
+|||-....++. ..... +-..-||.+++.+.+.
T Consensus 14 ~nPrn~G~l~~~d~~~~~----~np~CGD~i~l~lkvd 47 (157)
T 2z7e_A 14 LNPRNVGVLEDANGVGQC----GNPACGAAMLFTIKVN 47 (157)
T ss_dssp HSCSSBSCCTTCSEEEEE----EETTTTEEEEEEEEEC
T ss_pred hCCCCCCCCCCCCeEEEe----CCCCCCCEEEEEEEEe
Confidence 378777654332 33333 4445689999999994
No 13
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=33.83 E-value=21 Score=23.48 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCc-EEEEEEccCCcccCCceEEEEEEECC-C
Q 034360 1 MNPQVGSSETDA-VWVYTLTYGGGIVSGDSISCEITVAD-A 39 (97)
Q Consensus 1 ~~~~~~p~~~~~-~~vyl~~~sGGl~~GD~l~i~i~v~~-g 39 (97)
+|||-...-++. +.+ -....+-..-||.+++.+.+++ |
T Consensus 13 ~~P~n~g~l~~~~~~~-~~~~~~np~CGD~i~l~l~v~~~~ 52 (129)
T 3lvl_A 13 ENPRNVGSFDNNDENV-GSGMVGAPACGDVMKLQIKVNDEG 52 (129)
T ss_dssp HSCSSBSCCCTTCSSE-EEEEEECTTTCCEEEEEEEECSSS
T ss_pred hCCCCCCCCCCCCcce-eEEEecCCCCCCEEEEEEEECCCC
Confidence 377776543321 111 1111245577999999999985 5
No 14
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=32.96 E-value=56 Score=19.85 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=19.7
Q ss_pred CCcccCCceEEEEEEECCCcEEEEe
Q 034360 21 GGGIVSGDSISCEITVADACTAVLT 45 (97)
Q Consensus 21 sGGl~~GD~l~i~i~v~~ga~l~lT 45 (97)
-.+|-.||+++++++...+-...||
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it 69 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLV 69 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEE
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEE
Confidence 3678899999999999877455565
No 15
>4fxk_C Complement C4 gamma chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_C*
Probab=31.48 E-value=42 Score=25.20 Aligned_cols=47 Identities=4% Similarity=0.055 Sum_probs=31.2
Q ss_pred EEECCCcEEEEeCcccceeeecCCCCcceEEEEeeeceeeCCCceEEEechhhhhhHH
Q 034360 34 ITVADACTAVLTTQASTKVYKSLGSKSSEQILEMAVPAIVEERGVASFFDQQKEKKKK 91 (97)
Q Consensus 34 i~v~~ga~l~lTTQaAtKvy~~~~~~~s~Q~~~v~v~~~ve~gA~Le~lP~~~~~~~~ 91 (97)
+.|.+|-.-+|-.++..++ +..+.. |- .|++++++||+|.+.+-...
T Consensus 222 l~L~~gk~YLImG~~~~~~-~~~~~~---~Y-------~L~~~TwvE~WP~~~~C~~~ 268 (291)
T 4fxk_C 222 LRLEPGKEYLIMGLDGATY-DLEGHP---QY-------LLDSNSWIEEMPSERLCRST 268 (291)
T ss_dssp CCCCTTCEEEEECCCCSCB-CTTSCB---EE-------ECCSSCEEEECCCHHHHTSS
T ss_pred CCcccCCEEEEeecCCCcc-ccCCCE---EE-------EcCCCcEEEECCCcccccCh
Confidence 3566777777777776643 444332 32 39999999999988664443
No 16
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=31.02 E-value=32 Score=22.83 Aligned_cols=35 Identities=11% Similarity=0.020 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCc-EEEEEEccCCcccCCceEEEEEEECCC
Q 034360 1 MNPQVGSSETDA-VWVYTLTYGGGIVSGDSISCEITVADA 39 (97)
Q Consensus 1 ~~~~~~p~~~~~-~~vyl~~~sGGl~~GD~l~i~i~v~~g 39 (97)
+|||-...-++. ..... +-..-||.+++.+.++.|
T Consensus 17 ~nP~n~G~l~~~~~~~~~----~np~CGD~i~l~l~v~~~ 52 (138)
T 2qq4_A 17 QSPRNFGVLPQATKQAGG----MNPSCGDQVEVMVLLEGD 52 (138)
T ss_dssp HSCTTBSCCTTCSEEEEE----ECTTTCCEEEEEEEEETT
T ss_pred hCCCCCCCCCCCCeEEee----CCCCCCCEEEEEEEECCC
Confidence 378777654332 33333 335689999999999776
No 17
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=26.95 E-value=68 Score=19.68 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=18.0
Q ss_pred CcccCCceEEEEEEECCCcEEEEe
Q 034360 22 GGIVSGDSISCEITVADACTAVLT 45 (97)
Q Consensus 22 GGl~~GD~l~i~i~v~~ga~l~lT 45 (97)
.||-.||+++++++...|. ..||
T Consensus 60 ~~lk~Gd~V~F~~~~~~~~-~~it 82 (88)
T 2vb2_X 60 SEIKTGDKVAFNFVQQGNL-SLLQ 82 (88)
T ss_dssp CCCCTTCEEEEEEEEETTE-EEEE
T ss_pred hcCCCCCEEEEEEEEeCCE-EEEE
Confidence 5788999999999987665 5554
No 18
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=26.35 E-value=73 Score=19.16 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=17.9
Q ss_pred CcccCCceEEEEEEECCCcEEEEe
Q 034360 22 GGIVSGDSISCEITVADACTAVLT 45 (97)
Q Consensus 22 GGl~~GD~l~i~i~v~~ga~l~lT 45 (97)
.||-.||+++++++-..|. ..||
T Consensus 52 ~~lk~Gd~V~F~~~~~~~~-~~it 74 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQGNL-SLLQ 74 (80)
T ss_dssp CCCCTTCEEEEEEEEETTE-EEEE
T ss_pred hcCCCCCEEEEEEEEeCCE-EEEE
Confidence 5788999999999987665 4454
No 19
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=25.17 E-value=64 Score=20.60 Aligned_cols=25 Identities=12% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEccCCccc-CCceEEEEEEECCC
Q 034360 15 VYTLTYGGGIV-SGDSISCEITVADA 39 (97)
Q Consensus 15 vyl~~~sGGl~-~GD~l~i~i~v~~g 39 (97)
.|.+.+.-|++ .|+.+.+.|.+.++
T Consensus 54 ~y~VrP~~G~i~P~~s~~v~V~~~~~ 79 (128)
T 1z9l_A 54 RYCVRPNSGVIDPGSIVTVSVMLQPF 79 (128)
T ss_dssp GEEEESCEEEECTTCEEEEEEEECCC
T ss_pred ceEEeCCCcEECCCCeEEEEEEECcC
Confidence 47778888887 78888888888764
No 20
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=23.10 E-value=46 Score=22.32 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCc-EEEEEEccCCcccCCceEEEEEEECCC
Q 034360 1 MNPQVGSSETDA-VWVYTLTYGGGIVSGDSISCEITVADA 39 (97)
Q Consensus 1 ~~~~~~p~~~~~-~~vyl~~~sGGl~~GD~l~i~i~v~~g 39 (97)
+|||-...- +. ..... +-..-||.+++.+.++.|
T Consensus 20 ~nP~n~G~l-~~~~~~~~----~np~CGD~i~l~lkv~~~ 54 (147)
T 1xjs_A 20 KNPRNKGVL-NDSIVVDM----NNPTCGDRIRLTMKLDGD 54 (147)
T ss_dssp HSCCCCCCC-CSSEEEEE----EETTTTEEEEEEEECCSS
T ss_pred hCCCCCCCC-CCCeEEee----cCCCCCCEEEEEEEECCC
Confidence 377776654 32 33333 345689999999999876
No 21
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=22.11 E-value=1.2e+02 Score=20.32 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=14.9
Q ss_pred cccCCceEEEE-EEECCCcEEEEeC
Q 034360 23 GIVSGDSISCE-ITVADACTAVLTT 46 (97)
Q Consensus 23 Gl~~GD~l~i~-i~v~~ga~l~lTT 46 (97)
|+.++|.+... +.++.-+.+.|++
T Consensus 1 ~~~~~~~~~~s~~~vG~~~~f~v~~ 25 (191)
T 2k7q_A 1 GAMGDDSMRMSHLKVGSAADIPINI 25 (191)
T ss_dssp CTTCCCCCEEEEEEEEECCCEECSC
T ss_pred CccCCccccccceecCCceEEEEEc
Confidence 45667776643 5666666666665
No 22
>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*
Probab=22.01 E-value=83 Score=19.48 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=25.1
Q ss_pred CCcccCCceEEEEEEECCCcEEEEeCcccceeeecCC
Q 034360 21 GGGIVSGDSISCEITVADACTAVLTTQASTKVYKSLG 57 (97)
Q Consensus 21 sGGl~~GD~l~i~i~v~~ga~l~lTTQaAtKvy~~~~ 57 (97)
.-=+|+|=.|.|.|+++.+..+++ |||+...
T Consensus 44 ~tQVVAG~NY~ikv~v~~~~~~h~------~vy~~lp 74 (98)
T 2oct_A 44 KSQVVAGTNYFIKVHVGDEDFVHL------RVFQSLP 74 (98)
T ss_dssp EEEEEEEEEEEEEEECSTTCEEEE------EEEEESS
T ss_pred EEEEeCCEEEEEEEEECCCcEEEE------EEEecCC
Confidence 334788999999999999987664 8999874
No 23
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=21.27 E-value=1e+02 Score=18.04 Aligned_cols=21 Identities=10% Similarity=0.349 Sum_probs=14.7
Q ss_pred cccCCceEEEEEEECCCcEEEEeC
Q 034360 23 GIVSGDSISCEITVADACTAVLTT 46 (97)
Q Consensus 23 Gl~~GD~l~i~i~v~~ga~l~lTT 46 (97)
||-.||.+.+.+ ..| ++.|+.
T Consensus 26 gl~~gd~v~i~~--~~~-~iii~p 46 (82)
T 1mvf_D 26 NLNIDDEVKIDL--VDG-KLIIEP 46 (82)
T ss_dssp TCCTTCBEEEEE--ETT-EEEEEE
T ss_pred CCCCCCEEEEEE--ECC-EEEEEE
Confidence 678899887765 445 577764
No 24
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=20.80 E-value=8.7 Score=29.70 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=17.8
Q ss_pred CCceEEEechhhhhhHHHhhh
Q 034360 75 ERGVASFFDQQKEKKKKRKKA 95 (97)
Q Consensus 75 ~gA~Le~lP~~~~~~~~~~~~ 95 (97)
+..+|+||-+|++..|+++|.
T Consensus 256 ~~~FLnWLa~E~e~Rk~~~~~ 276 (315)
T 3qml_C 256 NKGFLNWLAQQCKARQSNLDN 276 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHhhhcc
Confidence 567899999999999988763
No 25
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.73 E-value=91 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEccCCccc-CCceEEEEEEECCC
Q 034360 15 VYTLTYGGGIV-SGDSISCEITVADA 39 (97)
Q Consensus 15 vyl~~~sGGl~-~GD~l~i~i~v~~g 39 (97)
.|.+.+.-|++ .|+.+.+.|.+.++
T Consensus 58 ~y~VrP~~GiI~P~~s~~v~V~l~~~ 83 (147)
T 2cri_A 58 RYCVRPNSGIIDPGSIVTVSVMLQPF 83 (147)
T ss_dssp SEEEESSEEECCTTCEEEEEEEECCC
T ss_pred cEEEcCCCcEECCCCeEEEEEEECCC
Confidence 47788888888 79999999998765
Done!