BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034364
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 80/92 (86%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++P+RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 2 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 61
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
YV+RKRI L PEKAIFIFV + LPPT M++
Sbjct: 62 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 93
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 80/92 (86%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++P+RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 3 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 62
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
YV+RKRI L PEKAIFIFV + LPPT M++
Sbjct: 63 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 94
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 80/92 (86%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++P+RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 5 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 64
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
YV+RKRI L PEKAIFIFV + LPPT M++
Sbjct: 65 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 96
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 79/92 (85%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++ +RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 63
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
YV+RKRI L PEKAIFIFV + LPPT M++
Sbjct: 64 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 79/92 (85%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++ +RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 63
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
YV+RKRI L PEKAIFIFV + LPPT M++
Sbjct: 64 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 79/92 (85%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++ +RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 5 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 64
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
YV+RKRI L PEKAIFIFV + LPPT M++
Sbjct: 65 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 96
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 71/92 (77%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K +K EH E+R+AE +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF
Sbjct: 10 KFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 69
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
+++RKRI L PE A+F FV N++PPT M S
Sbjct: 70 FLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 69/92 (75%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K +K +HP E R+ E +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF
Sbjct: 6 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFY 65
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
+++RKRI L PE A+F FV N +PPT M
Sbjct: 66 FLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 97
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 68/90 (75%)
Query: 5 SFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYV 64
+K +HP E R+ E +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF ++
Sbjct: 3 QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62
Query: 65 VRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
+RKRI L PE A+F FV N +PPT M
Sbjct: 63 IRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 69/89 (77%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVV 65
+K EHP E+R++E +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++
Sbjct: 7 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 66 RKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
RKRI L E A+F FV N++PPT M
Sbjct: 67 RKRIHLRAEDALFFFVNNVIPPTSATMGQ 95
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 69/89 (77%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVV 65
+K EHP E+R++E +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++
Sbjct: 7 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 66 RKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
RKRI L E A+F FV N++PPT M
Sbjct: 67 RKRIHLRAEDALFFFVNNVIPPTSATMGQ 95
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap,
Gabaa Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap,
Gabaa Receptor Associated Protein
Length = 117
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 69/89 (77%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVV 65
+K EHP E+R++E +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
Query: 66 RKRIKLSPEKAIFIFVKNILPPTGMKMAS 94
RKRI L E A+F FV N++PPT M
Sbjct: 65 RKRIHLRAEDALFFFVNNVIPPTSATMGQ 93
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 68/91 (74%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K FK +H LE R E+A+IR KYPDR+PVIVE+ S + +IDK+KYLVP+D+TV QF+
Sbjct: 2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFM 61
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93
+++RKRI+L EKAIF+FV +P + + M
Sbjct: 62 WIIRKRIQLPSEKAIFLFVDKTVPQSSLTMG 92
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 68/88 (77%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVV 65
+K+ H E RQ++AA++R+++PDR+P+I E+ SD+ E+D+ K+LVP+DLTVGQFV V+
Sbjct: 8 YKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVL 67
Query: 66 RKRIKLSPEKAIFIFVKNILPPTGMKMA 93
RKR++L E A+F++ + + P+ +MA
Sbjct: 68 RKRVQLEAESALFVYTNDTVLPSSAQMA 95
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 66/101 (65%), Gaps = 9/101 (8%)
Query: 1 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
M S K E E R AE +IR KYP+RIPV++ERA +S++P I+KKK+LVP ++ VG+
Sbjct: 3 MGMPSLKDEVSFENRVAETHKIRSKYPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGE 62
Query: 61 FVYVVRKRI---------KLSPEKAIFIFVKNILPPTGMKM 92
F +++ + I KL E+ I++FV NI+P TG+ M
Sbjct: 63 FKFILHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLM 103
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSD-VPEIDKKKYLVPADLTVGQFVYV 64
FK L RQ E A IR K+P++IPV+VER + +P +DK K+LVP +LT+ QF+ +
Sbjct: 15 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 74
Query: 65 VRKRIKLSPEKAIFIFVKN 83
+R R+ L +A ++ V N
Sbjct: 75 IRSRMVLRATEAFYLLVNN 93
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYV 64
FK R E +IRD++P +IPVI+ER + + +P +DK K+LVP + + + V +
Sbjct: 8 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 67
Query: 65 VRKRIKLSPEKAIFIFVKN 83
+R+R++L+P +A F+ V
Sbjct: 68 IRRRLQLNPTQAFFLLVNQ 86
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 8 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 67
Query: 61 FVYVVRKRIKLSPEKAIFIFVKN 83
+ ++R+R++L+ +A F+ V
Sbjct: 68 LIKIIRRRLQLNANQAFFLLVNG 90
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 8 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 67
Query: 61 FVYVVRKRIKLSPEKAIFIFVKN 83
+ ++R+R++L+ +A F+ V
Sbjct: 68 LIKIIRRRLQLNANQAFFLLVNG 90
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 8 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 67
Query: 61 FVYVVRKRIKLSPEKAIFIFVKN 83
+ ++R+R++L+ +A F+ V
Sbjct: 68 LIKIIRRRLQLNANQAFFLLVNG 90
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 4 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 63
Query: 61 FVYVVRKRIKLSPEKAIFIFVKN 83
+ ++R+R++L+ +A F+ V
Sbjct: 64 LIKIIRRRLQLNANQAFFLLVNG 86
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein
Light Chain-3
Length = 120
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 62
Query: 61 FVYVVRKRIKLSPEKAIFIFVKN 83
+ ++R+R++L+ +A F+ V
Sbjct: 63 LIKIIRRRLQLNANQAFFLLVNG 85
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 40 SDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPT 88
D P + KK+ V T+ + ++K +KL + +FI+V P+
Sbjct: 14 GDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPS 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,650,066
Number of Sequences: 62578
Number of extensions: 97707
Number of successful extensions: 257
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 32
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)