Query 034364
Match_columns 96
No_of_seqs 108 out of 317
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 12:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1654 Microtubule-associated 100.0 1.7E-42 3.7E-47 232.3 7.6 94 2-95 1-94 (116)
2 cd01611 GABARAP Ubiquitin doma 100.0 9.8E-40 2.1E-44 220.2 8.7 90 6-95 1-90 (112)
3 PTZ00380 microtubule-associate 100.0 3.7E-37 8.1E-42 210.0 7.5 87 4-95 2-89 (121)
4 PF02991 Atg8: Autophagy prote 100.0 2.2E-36 4.7E-41 201.8 7.6 82 14-95 1-82 (104)
5 cd01612 APG12_C Ubiquitin-like 99.8 2.3E-20 5.1E-25 121.0 5.6 57 39-95 9-66 (87)
6 KOG3439 Protein conjugation fa 99.5 7.5E-15 1.6E-19 98.9 4.9 66 28-95 29-95 (116)
7 PF04110 APG12: Ubiquitin-like 99.5 2.3E-14 5E-19 93.1 3.6 64 30-95 2-66 (87)
8 PF11816 DUF3337: Domain of un 91.8 0.48 1E-05 36.9 5.5 70 26-95 211-311 (331)
9 PF11976 Rad60-SLD: Ubiquitin- 89.9 0.52 1.1E-05 28.1 3.3 48 47-94 12-59 (72)
10 PF00240 ubiquitin: Ubiquitin 89.1 0.93 2E-05 26.6 4.0 47 48-95 8-54 (69)
11 smart00213 UBQ Ubiquitin homol 88.6 1.2 2.5E-05 25.3 4.1 46 48-94 12-57 (64)
12 cd00196 UBQ Ubiquitin-like pro 88.5 1.8 4E-05 22.6 4.7 41 44-85 6-46 (69)
13 cd01813 UBP_N UBP ubiquitin pr 85.3 1.1 2.4E-05 27.5 2.9 45 51-95 15-61 (74)
14 cd01798 parkin_N amino-termina 83.4 1.5 3.3E-05 26.0 2.9 45 49-94 12-56 (70)
15 cd01769 UBL Ubiquitin-like dom 82.1 3.7 8E-05 23.4 4.1 44 49-93 11-54 (69)
16 cd01776 Rin1_RA Ubiquitin doma 80.4 3.8 8.2E-05 26.6 3.9 37 47-83 15-53 (87)
17 cd01806 Nedd8 Nebb8-like ubiq 79.6 4.7 0.0001 23.7 4.1 45 49-94 14-58 (76)
18 KOG2660 Locus-specific chromos 79.4 1.5 3.3E-05 34.8 2.2 55 40-95 158-214 (331)
19 cd01807 GDX_N ubiquitin-like d 78.5 2.6 5.7E-05 25.3 2.7 45 49-94 14-58 (74)
20 PF13019 Telomere_Sde2: Telome 77.7 11 0.00023 27.1 6.0 54 30-85 1-56 (162)
21 cd01805 RAD23_N Ubiquitin-like 75.6 7.5 0.00016 23.1 4.2 45 49-94 14-60 (77)
22 cd06406 PB1_P67 A PB1 domain i 75.2 3.5 7.6E-05 26.3 2.7 28 51-79 16-43 (80)
23 cd01803 Ubiquitin Ubiquitin. U 74.9 6.3 0.00014 23.2 3.7 45 49-94 14-58 (76)
24 cd01809 Scythe_N Ubiquitin-lik 74.4 6.9 0.00015 22.8 3.8 46 48-94 13-58 (72)
25 cd01796 DDI1_N DNA damage indu 72.0 4 8.6E-05 24.6 2.3 37 49-85 13-49 (71)
26 PF11543 UN_NPL4: Nuclear pore 67.7 6.4 0.00014 24.7 2.6 46 49-95 17-67 (80)
27 cd01791 Ubl5 UBL5 ubiquitin-li 67.3 7.9 0.00017 23.7 2.9 42 51-93 17-58 (73)
28 cd01789 Alp11_N Ubiquitin-like 66.7 14 0.0003 23.1 4.0 33 51-83 18-51 (84)
29 cd01808 hPLIC_N Ubiquitin-like 66.0 8 0.00017 22.9 2.7 45 49-94 13-57 (71)
30 cd01794 DC_UbP_C dendritic cel 65.9 12 0.00026 22.6 3.5 45 48-93 11-55 (70)
31 PF08154 NLE: NLE (NUC135) dom 65.7 18 0.00039 21.6 4.3 42 44-85 14-56 (65)
32 PF12752 SUZ: SUZ domain; Int 65.7 7 0.00015 23.1 2.4 19 7-25 35-53 (59)
33 PF12436 USP7_ICP0_bdg: ICP0-b 65.5 9.4 0.0002 28.5 3.6 34 49-82 88-121 (249)
34 cd01810 ISG15_repeat2 ISG15 ub 64.6 9.3 0.0002 22.9 2.9 45 49-94 12-56 (74)
35 PTZ00044 ubiquitin; Provisiona 64.5 14 0.0003 21.9 3.7 46 48-94 13-58 (76)
36 cd01793 Fubi Fubi ubiquitin-li 63.7 18 0.00038 21.6 4.0 48 46-94 9-56 (74)
37 PF10302 DUF2407: DUF2407 ubiq 62.4 14 0.00031 24.0 3.6 51 41-92 10-61 (97)
38 cd01795 USP48_C USP ubiquitin- 62.3 13 0.00028 25.0 3.4 45 50-94 19-63 (107)
39 cd01812 BAG1_N Ubiquitin-like 62.2 12 0.00025 21.8 2.9 44 49-93 13-56 (71)
40 PF14560 Ubiquitin_2: Ubiquiti 61.9 15 0.00032 22.7 3.5 31 50-80 18-49 (87)
41 PF00837 T4_deiodinase: Iodoth 61.8 12 0.00026 28.4 3.5 33 4-37 158-190 (237)
42 cd01792 ISG15_repeat1 ISG15 ub 60.4 8.7 0.00019 23.5 2.2 43 51-93 18-61 (80)
43 cd01799 Hoil1_N Ubiquitin-like 59.2 12 0.00025 23.1 2.6 44 49-94 16-60 (75)
44 TIGR01682 moaD molybdopterin c 58.7 23 0.00049 21.5 3.9 45 49-93 19-66 (80)
45 PRK06437 hypothetical protein; 57.3 35 0.00076 20.4 4.5 40 49-93 14-53 (67)
46 cd01763 Sumo Small ubiquitin-r 56.9 39 0.00084 21.0 4.8 54 27-86 9-62 (87)
47 cd06407 PB1_NLP A PB1 domain i 56.5 28 0.00062 21.9 4.1 37 46-82 10-47 (82)
48 cd01790 Herp_N Homocysteine-re 56.4 24 0.00052 22.2 3.8 47 47-94 13-63 (79)
49 PF14533 USP7_C2: Ubiquitin-sp 56.1 12 0.00026 27.3 2.7 54 42-95 30-90 (213)
50 cd01804 midnolin_N Ubiquitin-l 55.2 16 0.00035 22.2 2.8 34 49-82 15-48 (78)
51 smart00666 PB1 PB1 domain. Pho 54.7 44 0.00096 19.9 5.1 37 46-82 11-47 (81)
52 cd01800 SF3a120_C Ubiquitin-li 54.6 17 0.00037 21.9 2.8 44 50-94 12-55 (76)
53 PF09358 UBA_e1_C: Ubiquitin-a 54.3 12 0.00025 25.4 2.2 27 48-74 35-61 (125)
54 PF02597 ThiS: ThiS family; I 54.3 24 0.00052 20.7 3.4 42 47-88 13-55 (77)
55 cd05992 PB1 The PB1 domain is 53.0 46 0.001 19.7 4.8 36 47-82 11-47 (81)
56 cd01815 BMSC_UbP_N Ubiquitin-l 52.3 20 0.00043 22.5 2.8 43 51-94 16-61 (75)
57 PF09379 FERM_N: FERM N-termin 50.0 45 0.00098 19.7 4.2 36 46-81 7-42 (80)
58 cd01802 AN1_N ubiquitin-like d 47.9 25 0.00054 22.9 2.9 44 49-93 41-84 (103)
59 cd01797 NIRF_N amino-terminal 45.4 23 0.0005 21.7 2.4 42 52-94 19-60 (78)
60 cd06398 PB1_Joka2 The PB1 doma 42.2 64 0.0014 20.7 4.2 33 47-79 11-48 (91)
61 PRK08364 sulfur carrier protei 40.6 80 0.0017 18.8 4.6 40 49-93 17-56 (70)
62 cd01768 RA RA (Ras-associating 39.7 81 0.0018 19.0 4.3 41 43-83 10-53 (87)
63 cd00754 MoaD Ubiquitin domain 38.2 85 0.0018 18.4 4.4 46 48-93 18-66 (80)
64 PF00789 UBX: UBX domain; Int 37.9 90 0.002 18.6 5.9 49 47-95 18-70 (82)
65 PRK11130 moaD molybdopterin sy 37.2 93 0.002 18.9 4.2 39 54-93 24-67 (81)
66 PF00564 PB1: PB1 domain; Int 37.1 91 0.002 18.5 5.0 33 50-82 16-48 (84)
67 PRK13964 coaD phosphopantethei 36.2 90 0.002 21.5 4.4 72 10-84 45-123 (140)
68 PLN02799 Molybdopterin synthas 35.9 64 0.0014 19.5 3.3 47 47-93 20-68 (82)
69 cd00565 ThiS ThiaminS ubiquiti 34.9 90 0.0019 18.1 3.7 37 46-87 5-41 (65)
70 PF05717 TnpB_IS66: IS66 Orf2 34.7 65 0.0014 21.2 3.4 27 57-83 16-43 (107)
71 PF12436 USP7_ICP0_bdg: ICP0-b 33.4 1E+02 0.0022 22.9 4.6 53 28-83 175-227 (249)
72 cd00952 CHBPH_aldolase Trans-o 32.3 58 0.0013 24.9 3.2 29 10-38 58-86 (309)
73 COG2002 AbrB Regulators of sta 32.1 52 0.0011 20.7 2.5 21 63-83 20-40 (89)
74 PF08817 YukD: WXG100 protein 31.5 44 0.00096 20.3 2.1 46 49-94 16-67 (79)
75 PF07929 PRiA4_ORF3: Plasmid p 31.2 1E+02 0.0022 21.4 4.1 37 47-83 19-55 (179)
76 PF02192 PI3K_p85B: PI3-kinase 30.9 98 0.0021 19.4 3.6 35 50-84 4-46 (78)
77 cd01775 CYR1_RA Ubiquitin doma 30.6 1.1E+02 0.0024 20.2 3.9 36 48-83 15-52 (97)
78 PF08825 E2_bind: E2 binding d 30.5 60 0.0013 20.6 2.6 28 52-79 3-38 (84)
79 PF00788 RA: Ras association ( 30.1 1.3E+02 0.0027 18.0 5.2 36 44-79 15-51 (93)
80 TIGR01683 thiS thiamine biosyn 29.7 1.1E+02 0.0024 17.7 3.5 35 46-85 4-38 (64)
81 TIGR02313 HpaI-NOT-DapA 2,4-di 29.6 68 0.0015 24.3 3.2 29 10-38 50-78 (294)
82 COG3592 Uncharacterized conser 29.3 54 0.0012 20.6 2.1 27 42-68 38-64 (74)
83 cd00408 DHDPS-like Dihydrodipi 29.3 71 0.0015 23.6 3.2 29 10-38 47-75 (281)
84 KOG0010 Ubiquitin-like protein 29.0 67 0.0015 27.0 3.2 45 47-92 26-70 (493)
85 cd00951 KDGDH 5-dehydro-4-deox 28.7 71 0.0015 24.0 3.2 28 10-37 50-77 (289)
86 PF01886 DUF61: Protein of unk 28.2 1.7E+02 0.0037 20.1 4.7 57 15-80 45-111 (132)
87 cd06408 PB1_NoxR The PB1 domai 27.9 93 0.002 20.0 3.1 24 49-72 15-38 (86)
88 cd06411 PB1_p51 The PB1 domain 27.6 86 0.0019 19.9 2.9 28 51-78 12-39 (78)
89 cd01938 ADPGK_ADPPFK ADP-depen 26.9 85 0.0018 25.8 3.5 38 1-38 216-253 (445)
90 TIGR00683 nanA N-acetylneurami 26.6 82 0.0018 23.8 3.2 29 10-38 51-79 (290)
91 PRK03620 5-dehydro-4-deoxygluc 26.3 84 0.0018 23.9 3.2 28 10-37 57-84 (303)
92 PF04014 Antitoxin-MazE: Antid 26.2 89 0.0019 17.1 2.5 21 63-83 13-33 (47)
93 PRK03170 dihydrodipicolinate s 26.0 84 0.0018 23.5 3.1 30 9-38 50-79 (292)
94 PRK00129 upp uracil phosphorib 25.9 63 0.0014 23.3 2.3 33 17-54 165-197 (209)
95 PRK04147 N-acetylneuraminate l 25.3 87 0.0019 23.5 3.1 29 10-38 54-82 (293)
96 PRK08577 hypothetical protein; 25.1 74 0.0016 21.2 2.4 21 63-83 19-39 (136)
97 PF05768 DUF836: Glutaredoxin- 25.0 65 0.0014 19.5 2.0 18 20-37 40-57 (81)
98 smart00295 B41 Band 4.1 homolo 24.9 2.1E+02 0.0046 19.4 4.8 35 47-81 15-51 (207)
99 PF00701 DHDPS: Dihydrodipicol 24.6 76 0.0016 23.6 2.6 29 10-38 51-79 (289)
100 cd06396 PB1_NBR1 The PB1 domai 24.3 1.3E+02 0.0028 19.1 3.3 27 46-72 10-38 (81)
101 PF11470 TUG-UBL1: GLUT4 regul 24.0 1.7E+02 0.0038 17.6 3.9 41 44-85 5-45 (65)
102 PF12949 HeH: HeH/LEM domain; 23.8 66 0.0014 17.3 1.6 15 53-67 1-15 (35)
103 PF15130 DUF4566: Domain of un 23.7 36 0.00077 25.7 0.7 45 48-92 154-206 (241)
104 PLN02417 dihydrodipicolinate s 23.0 1.1E+02 0.0023 23.0 3.2 29 10-38 51-79 (280)
105 cd00950 DHDPS Dihydrodipicolin 22.5 1.1E+02 0.0024 22.6 3.2 30 9-38 49-78 (284)
106 cd01777 SNX27_RA Ubiquitin dom 22.3 1.9E+02 0.004 18.7 3.8 33 51-83 17-53 (87)
107 PF15243 ANAPC15: Anaphase-pro 22.2 88 0.0019 20.4 2.3 20 13-32 35-54 (92)
108 PF02196 RBD: Raf-like Ras-bin 21.9 1.9E+02 0.0042 17.3 4.6 52 42-93 7-59 (71)
109 PF12108 SF3a60_bindingd: Spli 21.7 1.1E+02 0.0025 15.6 2.2 17 12-28 12-28 (28)
110 PF03147 FDX-ACB: Ferredoxin-f 21.6 99 0.0021 19.3 2.4 39 49-87 11-51 (94)
111 cd03308 CmuA_CmuC_like CmuA_Cm 21.5 79 0.0017 24.8 2.3 23 13-35 3-26 (378)
112 PF08216 CTNNBL: Catenin-beta- 20.8 95 0.0021 20.8 2.2 20 10-29 33-52 (108)
113 cd01760 RBD Ubiquitin-like dom 20.7 2.2E+02 0.0047 17.4 4.4 53 42-94 6-61 (72)
114 PRK04115 hypothetical protein; 20.6 3.1E+02 0.0067 19.2 5.8 56 16-80 49-113 (137)
115 PF02824 TGS: TGS domain; Int 20.6 1.1E+02 0.0025 17.6 2.4 37 52-91 13-49 (60)
116 PF14732 UAE_UbL: Ubiquitin/SU 20.2 41 0.00089 21.2 0.4 22 52-73 5-27 (87)
No 1
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=100.00 E-value=1.7e-42 Score=232.33 Aligned_cols=94 Identities=65% Similarity=1.090 Sum_probs=91.5
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEE
Q 034364 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (96)
Q Consensus 2 ~~~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~V 81 (96)
|+++||++|+||+|++|+.+||+|||+|||||||+++++++|+|||+|||||.++|||||+++||+||+|+|++||||||
T Consensus 1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV 80 (116)
T KOG1654|consen 1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV 80 (116)
T ss_pred CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCcccccC
Q 034364 82 KNILPPTGMKMASF 95 (96)
Q Consensus 82 nn~lp~~~~~m~~l 95 (96)
||.+|+++++||+|
T Consensus 81 n~~~p~ts~~ms~~ 94 (116)
T KOG1654|consen 81 NNTSPPTSATMSAL 94 (116)
T ss_pred cCcCCcchhhHHHH
Confidence 99999999999875
No 2
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=100.00 E-value=9.8e-40 Score=220.23 Aligned_cols=90 Identities=69% Similarity=1.170 Sum_probs=88.7
Q ss_pred ccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc
Q 034364 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL 85 (96)
Q Consensus 6 fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l 85 (96)
||++||||+|++|+++||++||+|||||||+++++++|+||++|||||+++||+||+.+||++|+|++++||||||||++
T Consensus 1 fk~~~s~e~R~~e~~~ir~kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~ 80 (112)
T cd01611 1 FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSL 80 (112)
T ss_pred CccccCHHHHHHHHHHHHHHCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccC
Q 034364 86 PPTGMKMASF 95 (96)
Q Consensus 86 p~~~~~m~~l 95 (96)
|++|++||+|
T Consensus 81 p~~~~~~~~l 90 (112)
T cd01611 81 PPTSATMSQL 90 (112)
T ss_pred CCchhHHHHH
Confidence 9999999986
No 3
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=100.00 E-value=3.7e-37 Score=210.00 Aligned_cols=87 Identities=30% Similarity=0.549 Sum_probs=83.9
Q ss_pred CcccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCcceeeE-EecCCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 4 NSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKY-LVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 4 ~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~Kf-lVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
++||++||||+|++|+++||+|||+|||||||++++++ ||+|| |||+|+|||||+++||+||+|++++ +|||||
T Consensus 2 ~~fK~~~s~e~R~~e~~~Ir~kyPdrIPVIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVn 76 (121)
T PTZ00380 2 SAYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIE 76 (121)
T ss_pred cchhhcCCHHHHHHHHHHHHHHCCCccEEEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEEC
Confidence 57999999999999999999999999999999999887 79999 6999999999999999999999999 999999
Q ss_pred CccCCCCcccccC
Q 034364 83 NILPPTGMKMASF 95 (96)
Q Consensus 83 n~lp~~~~~m~~l 95 (96)
|.+|+++++||+|
T Consensus 77 n~lp~~s~~mg~l 89 (121)
T PTZ00380 77 GSTPAVTATVGDI 89 (121)
T ss_pred CccCCccchHHHH
Confidence 9999999999986
No 4
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=100.00 E-value=2.2e-36 Score=201.75 Aligned_cols=82 Identities=62% Similarity=1.098 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 14 RRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 14 ~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
+|++|+++||+|||+|||||||+++++++|+|||+|||||+++||+||+++||+||+|++++||||||||.+|+++++||
T Consensus 1 ~R~~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~ 80 (104)
T PF02991_consen 1 ERKEESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG 80 (104)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred CcHHHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 034364 94 SF 95 (96)
Q Consensus 94 ~l 95 (96)
+|
T Consensus 81 el 82 (104)
T PF02991_consen 81 EL 82 (104)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 5
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=99.81 E-value=2.3e-20 Score=120.95 Aligned_cols=57 Identities=19% Similarity=0.465 Sum_probs=54.2
Q ss_pred CCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCc-cCCCCcccccC
Q 034364 39 KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNI-LPPTGMKMASF 95 (96)
Q Consensus 39 ~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~-lp~~~~~m~~l 95 (96)
-+++|+|+++||+||+++|+++|+.+||+||++++++|+||||||. .|++|++||+|
T Consensus 9 ~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~L 66 (87)
T cd01612 9 IGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNL 66 (87)
T ss_pred CCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHH
Confidence 4889999999999999999999999999999999999999999997 58899999986
No 6
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.5e-15 Score=98.91 Aligned_cols=66 Identities=18% Similarity=0.462 Sum_probs=59.9
Q ss_pred CcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc-CCCCcccccC
Q 034364 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL-PPTGMKMASF 95 (96)
Q Consensus 28 ~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l-p~~~~~m~~l 95 (96)
.||-|.+..- +++|.|+++||.|+.+.|++.++.+||+.|+|.++++|||||||++ |++|+++|+|
T Consensus 29 ~kV~i~l~ai--G~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~L 95 (116)
T KOG3439|consen 29 RKVQIRLRAI--GDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNL 95 (116)
T ss_pred ceEEEEEecc--CCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHH
Confidence 4666766443 8999999999999999999999999999999999999999999977 9999999875
No 7
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=99.48 E-value=2.3e-14 Score=93.08 Aligned_cols=64 Identities=22% Similarity=0.530 Sum_probs=44.8
Q ss_pred ccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc-CCCCcccccC
Q 034364 30 IPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL-PPTGMKMASF 95 (96)
Q Consensus 30 IpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l-p~~~~~m~~l 95 (96)
|-|..... +++|.|+++||-|..+.|++.+..+||++|++.+++++|+||||.+ |++|+++|+|
T Consensus 2 V~v~fk~i--G~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L 66 (87)
T PF04110_consen 2 VTVRFKAI--GSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDL 66 (87)
T ss_dssp EEEEEEEE--TT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHH
T ss_pred EEEEEEec--CCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHH
Confidence 44555444 7899999999999999999999999999999999999999999966 9999999876
No 8
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=91.77 E-value=0.48 Score=36.88 Aligned_cols=70 Identities=21% Similarity=0.385 Sum_probs=55.0
Q ss_pred CCCcccEEEEccCCCCCCCccee-----------------eEEecCCCchHhHHHHHhhhh--------------cCCCC
Q 034364 26 YPDRIPVIVERAEKSDVPEIDKK-----------------KYLVPADLTVGQFVYVVRKRI--------------KLSPE 74 (96)
Q Consensus 26 yP~kIpVIvEr~~~~~lp~l~k~-----------------KflVp~~~tv~~f~~~irk~l--------------~l~~~ 74 (96)
-+.||+-++..+..+..|.+..- |.-.|+-+.|.-+...|-.|+ .+.++
T Consensus 211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~ 290 (331)
T PF11816_consen 211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE 290 (331)
T ss_pred CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence 45677888888874444444443 788888889999999999999 45788
Q ss_pred CeEEEEEcCccCCCCcccccC
Q 034364 75 KAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 75 ~alfl~Vnn~lp~~~~~m~~l 95 (96)
+.|=|+||+.+.+.++|++.|
T Consensus 291 e~lEl~C~gqvL~~~mtLaTV 311 (331)
T PF11816_consen 291 EWLELLCNGQVLPPDMTLATV 311 (331)
T ss_pred ceEEEEeCCeEcCCcCCHHHH
Confidence 999999999988888888754
No 9
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=89.93 E-value=0.52 Score=28.08 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=35.8
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
...|-|..+.+++.+...++++.++++.+++-|+.++.-...++|.++
T Consensus 12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~ 59 (72)
T PF11976_consen 12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPED 59 (72)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHH
Confidence 567889999999999999999999999666666667644444455543
No 10
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=89.06 E-value=0.93 Score=26.60 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=37.0
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccccC
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
..+-|+.+.||+++...|....++++++--+ +.++.....+.++++.
T Consensus 8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L-~~~G~~L~d~~tL~~~ 54 (69)
T PF00240_consen 8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRL-IYNGKELDDDKTLSDY 54 (69)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSTGGGEEE-EETTEEESTTSBTGGG
T ss_pred EEEEECCCCCHHHhhhhccccccccccccee-eeeeecccCcCcHHHc
Confidence 3466999999999999999999988766544 4577666888888764
No 11
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=88.57 E-value=1.2 Score=25.27 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=34.2
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
..+-|+.+.||+++...|.++.+++++. +=|++|+.....+.++++
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~ 57 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD 57 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence 3466999999999999999999997764 334456666555666654
No 12
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=88.54 E-value=1.8 Score=22.61 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=31.0
Q ss_pred CcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc
Q 034364 44 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL 85 (96)
Q Consensus 44 ~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l 85 (96)
.-....+.++.+.|++++...|..+.+. +.+...|++|+..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~-~~~~~~l~~~~~~ 46 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGL-PPEQQRLLVNGKI 46 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCc-ChHHeEEEECCeE
Confidence 3456678889999999999999999984 4455566677643
No 13
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=85.34 E-value=1.1 Score=27.48 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=36.0
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCCeEEEE--EcCccCCCCcccccC
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEKAIFIF--VKNILPPTGMKMASF 95 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~alfl~--Vnn~lp~~~~~m~~l 95 (96)
=|+.+.|+++|...|....+++++.-=.+| +.+.++..+.+++++
T Consensus 15 ~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~ 61 (74)
T cd01813 15 TTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL 61 (74)
T ss_pred EECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence 488899999999999999999988666666 456677777777654
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=83.45 E-value=1.5 Score=26.04 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=33.9
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+++.||+++...|-++.++++++ .-|+.++.....+.++++
T Consensus 12 ~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~Li~~G~~L~d~~~l~~ 56 (70)
T cd01798 12 PVEVDPDTDIKQLKEVVAKRQGVPPDQ-LRVIFAGKELRNTTTIQE 56 (70)
T ss_pred EEEECCCChHHHHHHHHHHHHCCCHHH-eEEEECCeECCCCCcHHH
Confidence 345889999999999999999997654 455667766566666654
No 15
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=82.05 E-value=3.7 Score=23.39 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=32.3
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-++.+.|++++...|.++.++.++.--+ ..|+.....+.+++
T Consensus 11 ~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l-~~~g~~l~d~~~l~ 54 (69)
T cd01769 11 ELEVSPDDTVAELKAKIAAKEGVPPEQQRL-IYAGKILKDDKTLS 54 (69)
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEEE-EECCcCCCCcCCHH
Confidence 466888999999999999999987765444 44665555555554
No 16
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=80.38 E-value=3.8 Score=26.62 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=32.0
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCC--CCCeEEEEEcC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLS--PEKAIFIFVKN 83 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~--~~~alfl~Vnn 83 (96)
-+..+|+.+.|..++-...-.+..+. .+-+||+|||+
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg 53 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEE 53 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECC
Confidence 35678999999999999999999875 45789999998
No 17
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=79.56 E-value=4.7 Score=23.75 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=32.9
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|..+.++++++--++ .++.....+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~~L~d~~tl~~ 58 (76)
T cd01806 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDDKTAAD 58 (76)
T ss_pred EEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCeEccCCCCHHH
Confidence 3568999999999999999999988764444 45555455555543
No 18
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=79.36 E-value=1.5 Score=34.77 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=44.4
Q ss_pred CCCCCcceeeEE-ecCCCchHhHHHHHhhhhc-CCCCCeEEEEEcCccCCCCcccccC
Q 034364 40 SDVPEIDKKKYL-VPADLTVGQFVYVVRKRIK-LSPEKAIFIFVKNILPPTGMKMASF 95 (96)
Q Consensus 40 ~~lp~l~k~Kfl-Vp~~~tv~~f~~~irk~l~-l~~~~alfl~Vnn~lp~~~~~m~~l 95 (96)
+.++.|. ++|+ ++...||+.+..++++++. ++.-..+=+++|+.+...++|+.++
T Consensus 158 ~~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 158 DTLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred ccccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 3466666 5676 8999999999999999998 7777777788898888888887765
No 19
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=78.51 E-value=2.6 Score=25.31 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=33.3
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+=|+.+.||+++...|..+.++++++ .-|+.++.....+.++++
T Consensus 14 ~l~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~~G~~L~d~~~L~~ 58 (74)
T cd01807 14 SLQVSEKESVSTLKKLVSEHLNVPEEQ-QRLLFKGKALADDKRLSD 58 (74)
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHH-eEEEECCEECCCCCCHHH
Confidence 345889999999999999999997754 444567766566666654
No 20
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=77.65 E-value=11 Score=27.12 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=38.5
Q ss_pred ccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc-C-cc
Q 034364 30 IPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK-N-IL 85 (96)
Q Consensus 30 IpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn-n-~l 85 (96)
|-|+|.-.+.-.+| -...+-+|.+.||+++...|..++.......+||+++ | .+
T Consensus 1 i~Vlvss~~g~~lp--~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l 56 (162)
T PF13019_consen 1 INVLVSSFDGLTLP--PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQL 56 (162)
T ss_pred CeEEEecCCCCCCC--CeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCee
Confidence 34666443321222 3445779999999999999999999998887888776 4 55
No 21
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=75.65 E-value=7.5 Score=23.14 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=31.8
Q ss_pred eEEecCCCchHhHHHHHhhhhcC--CCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKL--SPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l--~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+=|+.+.||+++...|..+.++ .+++-- |+.++.....+.++++
T Consensus 14 ~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~-L~~~G~~L~d~~~L~~ 60 (77)
T cd01805 14 PIEVDPDDTVAELKEKIEEEKGCDYPPEQQK-LIYSGKILKDDTTLEE 60 (77)
T ss_pred EEEECCCCcHHHHHHHHHHhhCCCCChhHeE-EEECCEEccCCCCHHH
Confidence 45588999999999999999888 655433 3456655555555543
No 22
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=75.25 E-value=3.5 Score=26.35 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=23.5
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCCeEEE
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEKAIFI 79 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~alfl 79 (96)
-||.+++++|+..-|++||++.++ ++-|
T Consensus 16 rvp~~~~y~~L~~ki~~kLkl~~e-~i~L 43 (80)
T cd06406 16 QVARGLSYATLLQKISSKLELPAE-HITL 43 (80)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCch-hcEE
Confidence 389999999999999999999854 3444
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=74.88 E-value=6.3 Score=23.20 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=32.5
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|.++.++++++--. +.++.....+.++++
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L-~~~g~~L~d~~~L~~ 58 (76)
T cd01803 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSD 58 (76)
T ss_pred EEEECCcCcHHHHHHHHHHHhCCCHHHeEE-EECCEECCCCCcHHH
Confidence 467999999999999999999987654333 356655555555554
No 24
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=74.43 E-value=6.9 Score=22.76 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=32.9
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
..+-|+.+.||+++...|.++.+++++.--. +.++.....+.++++
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L-~~~g~~L~d~~~L~~ 58 (72)
T cd01809 13 HTFTVEEEITVLDLKEKIAEEVGIPVEQQRL-IYSGRVLKDDETLSE 58 (72)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEE-EECCEECCCcCcHHH
Confidence 3567889999999999999999987664333 346666555555543
No 25
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=72.01 E-value=4 Score=24.56 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=27.3
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL 85 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l 85 (96)
..-|+++.||+++...|..+-++++++---+|.+..+
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L 49 (71)
T cd01796 13 SLDVDPDLELENFKALCEAESGIPASQQQLIYNGREL 49 (71)
T ss_pred EEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEc
Confidence 3558889999999999999999987654434443344
No 26
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=67.66 E-value=6.4 Score=24.68 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=26.4
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcC----ccC-CCCcccccC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN----ILP-PTGMKMASF 95 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn----~lp-~~~~~m~~l 95 (96)
..=++.+.|++++..-|.+.++++.. ++.||.|+ .+. ..+++++++
T Consensus 17 Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~~~~~~~l~s~~~~tl~~l 67 (80)
T PF11543_consen 17 RIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKDRNNKEELKSSDSKTLSSL 67 (80)
T ss_dssp EEEE-TTSBHHHHHHHHHHHS---TT-T---BSSGGGGGCSSS-TT-CCCCT
T ss_pred EEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEecCCCCcccccCCcCCHHHc
Confidence 34588999999999999999998855 45555553 222 356666654
No 27
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=67.27 E-value=7.9 Score=23.68 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=31.1
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
=|+++.||+++...|.++-+++++.-=.+|. +.+...+.+++
T Consensus 17 ~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~-Gk~L~D~~tL~ 58 (73)
T cd01791 17 KCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW-YTIFKDHISLG 58 (73)
T ss_pred EeCCCCcHHHHHHHHHHHhCCChHHEEEEeC-CcCCCCCCCHH
Confidence 4889999999999998888888876655665 44444455554
No 28
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=66.71 E-value=14 Score=23.05 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=26.7
Q ss_pred EecCCCchHhHHHHHhhhhcCCCC-CeEEEEEcC
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPE-KAIFIFVKN 83 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~-~alfl~Vnn 83 (96)
=+|.++||+++..-|....+++++ +.|.+|-+.
T Consensus 18 r~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~ 51 (84)
T cd01789 18 KYSRGLTIAELKKKLELVVGTPASSMRLQLFDGD 51 (84)
T ss_pred ecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCC
Confidence 379999999999999888899765 566566665
No 29
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=65.96 E-value=8 Score=22.95 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=31.1
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|..+.||+++...|.++.++.+++ +-|..++.....+.++++
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~~-~~Li~~Gk~L~d~~tL~~ 57 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQEQ-LVLIFAGKILKDTDTLTQ 57 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHHH-EEEEECCeEcCCCCcHHH
Confidence 466889999999999999888876543 334345655455555543
No 30
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=65.93 E-value=12 Score=22.56 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=31.9
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
..+-|+.+.||+++...|...-++++++.-.+| ++.....+.+++
T Consensus 11 ~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~-~G~~L~D~~~l~ 55 (70)
T cd01794 11 VKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF-SGKLLTDKTRLQ 55 (70)
T ss_pred EEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE-CCeECCCCCCHH
Confidence 345688999999999999998888876543334 555555555554
No 31
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=65.73 E-value=18 Score=21.61 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=33.5
Q ss_pred CcceeeEEecCCCchHhHHHHHhhhh-cCCCCCeEEEEEcCcc
Q 034364 44 EIDKKKYLVPADLTVGQFVYVVRKRI-KLSPEKAIFIFVKNIL 85 (96)
Q Consensus 44 ~l~k~KflVp~~~tv~~f~~~irk~l-~l~~~~alfl~Vnn~l 85 (96)
.....-+.||.+.|..++...+.+-| .......+=+|||+..
T Consensus 14 ~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~ 56 (65)
T PF08154_consen 14 EVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEE 56 (65)
T ss_pred cCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEE
Confidence 44567899999999999999999988 5666666657888854
No 32
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=65.73 E-value=7 Score=23.10 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=16.2
Q ss_pred cccCCHHHHHHHHHHHHhh
Q 034364 7 KLEHPLERRQAEAARIRDK 25 (96)
Q Consensus 7 K~~~~~e~R~~e~~~ir~k 25 (96)
....|||+|.++++..|++
T Consensus 35 ~~~kSlEERE~eY~~AR~R 53 (59)
T PF12752_consen 35 RPSKSLEEREAEYAEARAR 53 (59)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 4568999999999998864
No 33
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=65.48 E-value=9.4 Score=28.53 Aligned_cols=34 Identities=21% Similarity=0.515 Sum_probs=25.4
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
.+.|+.+.+++++...|++++++++++.|-||-.
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEE 121 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEE 121 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 4679999999999999999999999988887643
No 34
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=64.59 E-value=9.3 Score=22.91 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=32.3
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
-+-|..+.||+++...|..+-++++++- -|+.++.....+.++++
T Consensus 12 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~G~~L~D~~tL~~ 56 (74)
T cd01810 12 IYEVQLTQTVATLKQQVSQRERVQADQF-WLSFEGRPMEDEHPLGE 56 (74)
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHe-EEEECCEECCCCCCHHH
Confidence 3568889999999999999888876543 34456655555566543
No 35
>PTZ00044 ubiquitin; Provisional
Probab=64.47 E-value=14 Score=21.90 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=32.4
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
..+-|..+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 13 ~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g~~L~d~~~l~~ 58 (76)
T PTZ00044 13 QSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY-SGKQMSDDLKLSD 58 (76)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE-CCEEccCCCcHHH
Confidence 346688999999999999999999876544444 4544445555543
No 36
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=63.66 E-value=18 Score=21.64 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=34.6
Q ss_pred ceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 46 DKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 46 ~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+...+-|+.+.||+++...|..+-++++++- -|+.++.....+.++++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~Li~~Gk~L~D~~tL~~ 56 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQ-VLLLAGVPLEDDATLGQ 56 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHE-EEEECCeECCCCCCHHH
Confidence 3455678999999999999999988877654 34445655555566554
No 37
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=62.38 E-value=14 Score=24.01 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=33.9
Q ss_pred CCCCcceeeEEecCCCchHhHHHHHhhhh-cCCCCCeEEEEEcCccCCCCccc
Q 034364 41 DVPEIDKKKYLVPADLTVGQFVYVVRKRI-KLSPEKAIFIFVKNILPPTGMKM 92 (96)
Q Consensus 41 ~lp~l~k~KflVp~~~tv~~f~~~irk~l-~l~~~~alfl~Vnn~lp~~~~~m 92 (96)
.+|||.=. +--|.+.|+.++...||.++ .-.....|=|..++.+.+.++.+
T Consensus 10 sipDl~L~-I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l 61 (97)
T PF10302_consen 10 SIPDLPLD-IPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDL 61 (97)
T ss_pred CCCCceee-cCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchh
Confidence 57774311 11558899999999999999 55566777555566665444433
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=62.27 E-value=13 Score=25.02 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=32.7
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
-.|..+.||+++...|-++++..|.+.=-+|.++.+--.+.|+++
T Consensus 19 L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLss 63 (107)
T cd01795 19 LLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGT 63 (107)
T ss_pred EEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHh
Confidence 459999999999999999999987744333345555556666654
No 39
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=62.20 E-value=12 Score=21.82 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=29.9
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-|+.+.||+++...|.+.-+++++.--.+ .++.....+.+++
T Consensus 13 ~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~l~d~~~L~ 56 (71)
T cd01812 13 DLSISSQATFGDLKKMLAPVTGVEPRDQKLI-FKGKERDDAETLD 56 (71)
T ss_pred EEEECCCCcHHHHHHHHHHhhCCChHHeEEe-eCCcccCccCcHH
Confidence 3458899999999999999989887643333 3444333444544
No 40
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=61.91 E-value=15 Score=22.72 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=25.6
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCC-CeEEEE
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPE-KAIFIF 80 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~-~alfl~ 80 (96)
--+|.++||+++...|-+..+++++ ..|+++
T Consensus 18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 4589999999999999999999865 667776
No 41
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=61.76 E-value=12 Score=28.42 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=29.0
Q ss_pred CcccccCCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 034364 4 NSFKLEHPLERRQAEAARIRDKYPDRIPVIVERA 37 (96)
Q Consensus 4 ~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~ 37 (96)
..+++..|+|+|..-++.+++++| .+||+|..-
T Consensus 158 ~~i~qh~sledR~~aA~~l~~~~~-~~pi~vD~m 190 (237)
T PF00837_consen 158 YEIPQHRSLEDRLRAAKLLKEEFP-QCPIVVDTM 190 (237)
T ss_pred eeecCCCCHHHHHHHHHHHHhhCC-CCCEEEEcc
Confidence 468899999999999999999997 689999764
No 42
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=60.43 E-value=8.7 Score=23.48 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=28.5
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCC-eEEEEEcCccCCCCcccc
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEK-AIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~-alfl~Vnn~lp~~~~~m~ 93 (96)
=|+.+.||+++...|-+..++.+++ .|.+..++.....+.+++
T Consensus 18 ~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~ 61 (80)
T cd01792 18 SLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61 (80)
T ss_pred EcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHH
Confidence 3688999999999999888887653 332222455544444544
No 43
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=59.22 E-value=12 Score=23.07 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=31.3
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCC-CeEEEEEcCccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPE-KAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~-~alfl~Vnn~lp~~~~~m~~ 94 (96)
.+-|+.+.||+++...|-.+-+++++ +.| |-+..+-..+.++++
T Consensus 16 ~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G~~L~dD~~tL~~ 60 (75)
T cd01799 16 WLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIGQRLARDQETLYS 60 (75)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcCCeeCCCcCCHHH
Confidence 35689999999999999999999875 444 544454434455543
No 44
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=58.67 E-value=23 Score=21.47 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=31.0
Q ss_pred eEEecCC-CchHhHHHHHhhhhc-C-CCCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPAD-LTVGQFVYVVRKRIK-L-SPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~-~tv~~f~~~irk~l~-l-~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-+|.+ .|+.++...|..+.. + .....+.++||+..-..+..+.
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~ 66 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLN 66 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcC
Confidence 4457776 899999999988764 2 2235678999986644455443
No 45
>PRK06437 hypothetical protein; Provisional
Probab=57.34 E-value=35 Score=20.40 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=28.1
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-++...|++++.. .|++++ +.+-+.+|+.+-+.+..+.
T Consensus 14 ~~~i~~~~tv~dLL~----~Lgi~~-~~vaV~vNg~iv~~~~~L~ 53 (67)
T PRK06437 14 TIEIDHELTVNDIIK----DLGLDE-EEYVVIVNGSPVLEDHNVK 53 (67)
T ss_pred EEEcCCCCcHHHHHH----HcCCCC-ccEEEEECCEECCCceEcC
Confidence 455788899999875 457864 5667789997744555553
No 46
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=56.93 E-value=39 Score=20.99 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=40.3
Q ss_pred CCcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccC
Q 034364 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILP 86 (96)
Q Consensus 27 P~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp 86 (96)
+.+|-|-| +.. .-+...|-|..+.|+..+...+..+.++++++.=|+|-+..+-
T Consensus 9 ~~~i~I~v-~~~-----~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~ 62 (87)
T cd01763 9 SEHINLKV-KGQ-----DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR 62 (87)
T ss_pred CCeEEEEE-ECC-----CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC
Confidence 45566666 332 2234578899999999999999999999998777777655553
No 47
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=56.52 E-value=28 Score=21.85 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=29.1
Q ss_pred ceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEE-EEc
Q 034364 46 DKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFI-FVK 82 (96)
Q Consensus 46 ~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl-~Vn 82 (96)
|..-|-+|.+.++.++...|++++++...+.+-| |.+
T Consensus 10 d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 10 EKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 3457889999999999999999999976444444 555
No 48
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=56.42 E-value=24 Score=22.24 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=30.9
Q ss_pred eeeEEe--cCCCchHhHHHHHhhhhc--CCCCCeEEEEEcCccCCCCccccc
Q 034364 47 KKKYLV--PADLTVGQFVYVVRKRIK--LSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 47 k~KflV--p~~~tv~~f~~~irk~l~--l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+.-|-| +.+.||+++...|....+ .++++-=.+| .+++...++++++
T Consensus 13 ~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy-~GKiLkD~~tL~~ 63 (79)
T cd01790 13 YEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY-SGKLLPDHLKLRD 63 (79)
T ss_pred eEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE-cCeeccchhhHHH
Confidence 334666 789999999999988764 2234333444 4556677777654
No 49
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=56.13 E-value=12 Score=27.29 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCCcceeeEEecCCCchHhHHHHHhhhhcCCCC--CeEEEE-E-cCcc---CCCCcccccC
Q 034364 42 VPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPE--KAIFIF-V-KNIL---PPTGMKMASF 95 (96)
Q Consensus 42 lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~--~alfl~-V-nn~l---p~~~~~m~~l 95 (96)
+-.-+.-.++||++-||+++..-++++++++++ ..|-++ | |+.+ .+.+..+++|
T Consensus 30 ~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 30 LKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp S-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred CcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 334456789999999999999999999998654 344332 3 3322 4566655544
No 50
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=55.24 E-value=16 Score=22.25 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=26.5
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
..-|+.+.||+++...|.++.++.+++--++|.+
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~G 48 (78)
T cd01804 15 DLSVPPDETVEGLKKRISQRLKVPKERLALLHRE 48 (78)
T ss_pred EEEECCcCHHHHHHHHHHHHhCCChHHEEEEECC
Confidence 3568999999999999998888887654444543
No 51
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=54.73 E-value=44 Score=19.92 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=29.5
Q ss_pred ceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 46 DKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 46 ~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
+..-+.+|.+.|..+|..-|.+++++..+.-..-|.+
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 3567889999999999999999999875444445665
No 52
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=54.64 E-value=17 Score=21.92 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=31.4
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
+-|+.+.||++|...|....+++++.- =|..++.....+.++++
T Consensus 12 l~v~~~~TV~~lK~~i~~~~gip~~~q-~L~~~G~~L~d~~tL~~ 55 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHEETGMPAGKQ-KLQYEGIFIKDSNSLAY 55 (76)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHHE-EEEECCEEcCCCCcHHH
Confidence 458899999999999999989877643 33345555555556543
No 53
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=54.30 E-value=12 Score=25.39 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=20.6
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCC
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPE 74 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~ 74 (96)
-+|-|+.++|+++|+..++++.+++.+
T Consensus 35 Dr~~v~~~~Tl~~li~~~~~~~~lev~ 61 (125)
T PF09358_consen 35 DRIEVNGDMTLQELIDYFKEKYGLEVT 61 (125)
T ss_dssp -EEEEES--BHHHHHHHHHHTTS-EEE
T ss_pred eEEEEcCCCCHHHHHHHHHHHhCceEE
Confidence 578899999999999999999987654
No 54
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=54.26 E-value=24 Score=20.70 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=31.3
Q ss_pred eeeEEecCCCchHhHHHHHhhhhc-CCCCCeEEEEEcCccCCC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIK-LSPEKAIFIFVKNILPPT 88 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~-l~~~~alfl~Vnn~lp~~ 88 (96)
.....++...|++++...+..+.. +...+.+-++||+.+...
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~ 55 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD 55 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC
Confidence 456789999999999998887763 334477888999966433
No 55
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=52.97 E-value=46 Score=19.66 Aligned_cols=36 Identities=6% Similarity=0.198 Sum_probs=28.5
Q ss_pred eeeEEec-CCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 47 KKKYLVP-ADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 47 k~KflVp-~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
...|.+| .+.+..+|...|++++++..+.-.+=|.+
T Consensus 11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 11 IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 4567888 99999999999999999876444455555
No 56
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=52.29 E-value=20 Score=22.51 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=28.6
Q ss_pred EecCCCchHhHHHHHhhhhc--CC-CCCeEEEEEcCccCCCCccccc
Q 034364 51 LVPADLTVGQFVYVVRKRIK--LS-PEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~--l~-~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
.-|.+.||+++...|..+.+ .. +++---+|. +.....+.++++
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~-GKiL~D~~TL~d 61 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHC-GRKLKDDQTLDF 61 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeC-CcCCCCCCcHHH
Confidence 35899999999999999964 43 444333444 444566666654
No 57
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=49.95 E-value=45 Score=19.71 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=30.7
Q ss_pred ceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEE
Q 034364 46 DKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (96)
Q Consensus 46 ~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~V 81 (96)
....|-|+++.|+.++...|-++|+|...+-+=|.+
T Consensus 7 ~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 7 TTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 346788999999999999999999999777666666
No 58
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=47.92 E-value=25 Score=22.90 Aligned_cols=44 Identities=11% Similarity=-0.018 Sum_probs=30.9
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+=|..+.||+++...|..+-++++++.-.+ .++.....+.+++
T Consensus 41 ~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~~Gk~L~D~~tL~ 84 (103)
T cd01802 41 ELRVSPFETVISVKAKIQRLEGIPVAQQHLI-WNNMELEDEYCLN 84 (103)
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-ECCEECCCCCcHH
Confidence 3558999999999999999999887643333 4554444445444
No 59
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=45.36 E-value=23 Score=21.73 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=29.6
Q ss_pred ecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccccc
Q 034364 52 VPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMAS 94 (96)
Q Consensus 52 Vp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~~ 94 (96)
|..+.||+++..-|..+-++++++-=.+ .++.....+.++++
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~QrLi-~~Gk~L~D~~tL~~ 60 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQRLF-YRGKQMEDGHTLFD 60 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHeEEE-eCCEECCCCCCHHH
Confidence 6789999999999999888876543333 35655555555543
No 60
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=42.17 E-value=64 Score=20.67 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=26.2
Q ss_pred eeeEEecC-----CCchHhHHHHHhhhhcCCCCCeEEE
Q 034364 47 KKKYLVPA-----DLTVGQFVYVVRKRIKLSPEKAIFI 79 (96)
Q Consensus 47 k~KflVp~-----~~tv~~f~~~irk~l~l~~~~alfl 79 (96)
...|-+|. +++..++..-|++++++.+...+-|
T Consensus 11 ~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l 48 (91)
T cd06398 11 LRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSL 48 (91)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEE
Confidence 45677785 7999999999999999987544433
No 61
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=40.56 E-value=80 Score=18.80 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=27.6
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
.+-++...|++++... |++++ +.+-+.+|+.+.+.+..+.
T Consensus 17 ~~~~~~~~tv~~ll~~----l~~~~-~~v~v~vNg~iv~~~~~l~ 56 (70)
T PRK08364 17 EIEWRKGMKVADILRA----VGFNT-ESAIAKVNGKVALEDDPVK 56 (70)
T ss_pred EEEcCCCCcHHHHHHH----cCCCC-ccEEEEECCEECCCCcCcC
Confidence 4457888999997754 46665 6688889997755555443
No 62
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=39.67 E-value=81 Score=19.03 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCcceeeEEecCCCchHhHHHHHhhhhcCC-C--CCeEEEEEcC
Q 034364 43 PEIDKKKYLVPADLTVGQFVYVVRKRIKLS-P--EKAIFIFVKN 83 (96)
Q Consensus 43 p~l~k~KflVp~~~tv~~f~~~irk~l~l~-~--~~alfl~Vnn 83 (96)
|.-.-+...|+++.|.++++..+-++.++. . .=+||..+++
T Consensus 10 ~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 10 SGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred CCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 334456788999999999999999999998 2 3344444444
No 63
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=38.23 E-value=85 Score=18.42 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=30.2
Q ss_pred eeEEecCCCchHhHHHHHhhhhcC---CCCCeEEEEEcCccCCCCcccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKL---SPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l---~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
..+-+|+..|++++...|..+..- .....+-++||+..-+.+..+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~ 66 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLK 66 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccC
Confidence 345678889999999888766431 1235666889986644555443
No 64
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=37.85 E-value=90 Score=18.64 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=33.9
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcC---ccCCCC-cccccC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN---ILPPTG-MKMASF 95 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn---~lp~~~-~~m~~l 95 (96)
+..--.+.+.|++++..+|...+.......+.|+.+- .+...+ ++++++
T Consensus 18 ~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~ 70 (82)
T PF00789_consen 18 RLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEA 70 (82)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCC
T ss_pred EEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHh
Confidence 3344566999999999999999887775556665542 344444 777765
No 65
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=37.22 E-value=93 Score=18.90 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=25.9
Q ss_pred CCCchHhHHHHHhhhhc-----CCCCCeEEEEEcCccCCCCcccc
Q 034364 54 ADLTVGQFVYVVRKRIK-----LSPEKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 54 ~~~tv~~f~~~irk~l~-----l~~~~alfl~Vnn~lp~~~~~m~ 93 (96)
...||+++...|..+.. +. ...+-++||+.+-+.++.+.
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~-~~~~~~aVN~~~~~~~~~l~ 67 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALE-DGKLLAAVNQTLVSFDHPLT 67 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhc-CCCEEEEECCEEcCCCCCCC
Confidence 35799999999977642 22 33456889987755555443
No 66
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=37.06 E-value=91 Score=18.46 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=28.4
Q ss_pred EEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc
Q 034364 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn 82 (96)
+-++.+.+..+|...|++++++.+..--+-|.+
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 679999999999999999999986666666766
No 67
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=36.16 E-value=90 Score=21.52 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCcc---eeeEEecCCCchHhHHHHHhhh-h--cCCC-CCeEEEEEc
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEID---KKKYLVPADLTVGQFVYVVRKR-I--KLSP-EKAIFIFVK 82 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~---k~KflVp~~~tv~~f~~~irk~-l--~l~~-~~alfl~Vn 82 (96)
.++++|.+..+...+.+|+ |-|+ ....+-+-++. .-.++|-.=-.+++|-+.+.-. + .|++ =+++||...
T Consensus 45 ~s~e~R~~~l~~~~~~~~~-v~v~--~~~~~l~v~~~~~~~a~~ivrGlR~~~DfeyE~~~a~~n~~l~~~ietvfl~~~ 121 (140)
T PRK13964 45 SDLDSRFKNVKNKLKDFKN-VEVL--INENKLTAEIAKKLGANFLIRSARNNIDFQYEIVLAAGNKSLNNDLETILIIPD 121 (140)
T ss_pred CCHHHHHHHHHHHHcCCCC-cEEe--cCcCCcHHHHHHHCCCeEEEEecCCCccHHHHHHHHHHHHhhcCCCeEEEeecC
Confidence 6899999999999999986 4333 21112111222 2468888888888887766521 1 3554 488999877
Q ss_pred Cc
Q 034364 83 NI 84 (96)
Q Consensus 83 n~ 84 (96)
..
T Consensus 122 ~~ 123 (140)
T PRK13964 122 YD 123 (140)
T ss_pred CC
Confidence 53
No 68
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=35.88 E-value=64 Score=19.48 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=29.2
Q ss_pred eeeEEecCCCchHhHHHHHhhhh-cCCC-CCeEEEEEcCccCCCCcccc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRI-KLSP-EKAIFIFVKNILPPTGMKMA 93 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l-~l~~-~~alfl~Vnn~lp~~~~~m~ 93 (96)
...+-+|...|++++...|..+. .+.. ..++-+.||+...+.++.+.
T Consensus 20 ~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~ 68 (82)
T PLN02799 20 DMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALK 68 (82)
T ss_pred eEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcC
Confidence 34556788999999988886543 1111 12345789986655555443
No 69
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=34.89 E-value=90 Score=18.08 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=25.6
Q ss_pred ceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCC
Q 034364 46 DKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPP 87 (96)
Q Consensus 46 ~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~ 87 (96)
....+-+|...|+.++...+ ++++ +.+-+.||+.+.+
T Consensus 5 Ng~~~~~~~~~tv~~ll~~l----~~~~-~~i~V~vNg~~v~ 41 (65)
T cd00565 5 NGEPREVEEGATLAELLEEL----GLDP-RGVAVALNGEIVP 41 (65)
T ss_pred CCeEEEcCCCCCHHHHHHHc----CCCC-CcEEEEECCEEcC
Confidence 45667788999999877654 4554 3455779997633
No 70
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.74 E-value=65 Score=21.20 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=22.5
Q ss_pred chHhHHHHHhhhhcCCC-CCeEEEEEcC
Q 034364 57 TVGQFVYVVRKRIKLSP-EKAIFIFVKN 83 (96)
Q Consensus 57 tv~~f~~~irk~l~l~~-~~alfl~Vnn 83 (96)
.+.-+..+++..++++| +.++|+|+|.
T Consensus 16 g~dgL~~lV~~~~~~dp~~g~~fvF~nr 43 (107)
T PF05717_consen 16 GIDGLAALVREELGLDPFSGDLFVFCNR 43 (107)
T ss_pred ChhHHHHHHHHhhcCCCCcceEEEEEec
Confidence 56678889999999874 5789999995
No 71
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=33.44 E-value=1e+02 Score=22.94 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=34.6
Q ss_pred CcccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcC
Q 034364 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN 83 (96)
Q Consensus 28 ~kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn 83 (96)
+||-|.+......+-+ ....-++.++|..|+...|-++|+++|+.=-|.-+|+
T Consensus 175 nrv~V~f~~~~~~~~~---~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 175 NRVEVEFKPKDNPNDP---EFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp HEEEEEEEETTSTT------EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred CeEEEEEEECCCCCCC---CEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 4677777664333222 5667799999999999999999999998777777765
No 72
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=32.35 E-value=58 Score=24.92 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+.-.+|+|||+--..
T Consensus 58 Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~ 86 (309)
T cd00952 58 LTWEEKQAFVATVVETVAGRVPVFVGATT 86 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEecc
Confidence 36699999999999989999999997654
No 73
>COG2002 AbrB Regulators of stationary/sporulation gene expression [Transcription]
Probab=32.12 E-value=52 Score=20.69 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.7
Q ss_pred HHHhhhhcCCCCCeEEEEEcC
Q 034364 63 YVVRKRIKLSPEKAIFIFVKN 83 (96)
Q Consensus 63 ~~irk~l~l~~~~alfl~Vnn 83 (96)
.-+|++|++.+.+.+-++++.
T Consensus 20 keiR~~lgi~~Gd~lei~~~~ 40 (89)
T COG2002 20 KEIREALGIKEGDVLEIIVDG 40 (89)
T ss_pred HHHHHHhCCCCCCEEEEEEeC
Confidence 458999999999999999885
No 74
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=31.49 E-value=44 Score=20.27 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=29.3
Q ss_pred eEEecCCCchHhHHHHHhhhhcCCCCCe----EEEEE-c-CccCCCCccccc
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLSPEKA----IFIFV-K-NILPPTGMKMAS 94 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~~~~a----lfl~V-n-n~lp~~~~~m~~ 94 (96)
-..+|.+.++++++-.|-..+++...++ -|-++ + +...+.+.++++
T Consensus 16 Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~ 67 (79)
T PF08817_consen 16 DLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLAD 67 (79)
T ss_dssp EEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGG
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhH
Confidence 4579999999999999999999754322 35555 4 354566666654
No 75
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=31.16 E-value=1e+02 Score=21.43 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=24.1
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcC
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN 83 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn 83 (96)
...+.||.+.|+++|-.+|..-++......--+++++
T Consensus 19 wRri~Vp~~~tl~~Lh~~Iq~afgw~~~HL~~F~~~~ 55 (179)
T PF07929_consen 19 WRRIEVPADITLADLHEVIQAAFGWDDDHLYEFFIGG 55 (179)
T ss_dssp EEEEEEETT-BHHHHHHHHHHHTT----S-EEEEEE-
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCcCCCEeEEEEECC
Confidence 4678999999999999999999998765443344433
No 76
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=30.87 E-value=98 Score=19.41 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=24.9
Q ss_pred EEecCCCchHhHHHHHhhhhc--------CCCCCeEEEEEcCc
Q 034364 50 YLVPADLTVGQFVYVVRKRIK--------LSPEKAIFIFVKNI 84 (96)
Q Consensus 50 flVp~~~tv~~f~~~irk~l~--------l~~~~alfl~Vnn~ 84 (96)
+-||.+.|++++..-+.+..+ .+++.=+|..||+.
T Consensus 4 l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~in~~ 46 (78)
T PF02192_consen 4 LRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSCINQF 46 (78)
T ss_dssp EEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEEEBTT
T ss_pred EEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEEecCC
Confidence 348999999999998886654 34667778888863
No 77
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=30.60 E-value=1.1e+02 Score=20.20 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.0
Q ss_pred eeEEecCCCchHhHHHHHhhhhcCCCC--CeEEEEEcC
Q 034364 48 KKYLVPADLTVGQFVYVVRKRIKLSPE--KAIFIFVKN 83 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~l~l~~~--~alfl~Vnn 83 (96)
..+..|-+-||+|++..+.++..+.++ -.|++.++|
T Consensus 15 ~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~ 52 (97)
T cd01775 15 TTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHD 52 (97)
T ss_pred EEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECC
Confidence 356789999999999999999988764 557778887
No 78
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=30.47 E-value=60 Score=20.56 Aligned_cols=28 Identities=14% Similarity=0.417 Sum_probs=20.7
Q ss_pred ecCCCchHhHHHHHhhh--hcCC------CCCeEEE
Q 034364 52 VPADLTVGQFVYVVRKR--IKLS------PEKAIFI 79 (96)
Q Consensus 52 Vp~~~tv~~f~~~irk~--l~l~------~~~alfl 79 (96)
|+++.|+++|+..|..+ +++. ++.+||+
T Consensus 3 v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm 38 (84)
T PF08825_consen 3 VSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYM 38 (84)
T ss_dssp ESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEE
T ss_pred cCccchHHHHHHHHHhChhhhcCCCcccCCCceEEE
Confidence 78899999999999987 6653 3466665
No 79
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=30.10 E-value=1.3e+02 Score=17.95 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=28.0
Q ss_pred CcceeeEEecCCCchHhHHHHHhhhhcCCCC-CeEEE
Q 034364 44 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPE-KAIFI 79 (96)
Q Consensus 44 ~l~k~KflVp~~~tv~~f~~~irk~l~l~~~-~alfl 79 (96)
...-+.+.|+.+.|+.+++..+-+++++..+ +...|
T Consensus 15 ~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 15 GSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp CCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 3356788999999999999999999999433 33444
No 80
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=29.69 E-value=1.1e+02 Score=17.66 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=25.6
Q ss_pred ceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc
Q 034364 46 DKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL 85 (96)
Q Consensus 46 ~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l 85 (96)
..+.+-+|...|+.++... +++++ +.+-+-+|+.+
T Consensus 4 Ng~~~~~~~~~tv~~ll~~----l~~~~-~~v~v~vN~~i 38 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLES----LGLDP-RRVAVAVNGEI 38 (64)
T ss_pred CCeEEEcCCCCcHHHHHHH----cCCCC-CeEEEEECCEE
Confidence 4556778899999987764 45664 66678899966
No 81
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=29.64 E-value=68 Score=24.31 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+...+|+|||+--..
T Consensus 50 Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~ 78 (294)
T TIGR02313 50 LTLEERKQAIENAIDQIAGRIPFAPGTGA 78 (294)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEECCc
Confidence 46799999999999989999999986543
No 82
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=29.31 E-value=54 Score=20.60 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCCcceeeEEecCCCchHhHHHHHhhh
Q 034364 42 VPEIDKKKYLVPADLTVGQFVYVVRKR 68 (96)
Q Consensus 42 lp~l~k~KflVp~~~tv~~f~~~irk~ 68 (96)
+-.+.++-|+.|....+.+...+|+..
T Consensus 38 vF~~~rkPWI~Pd~~~ve~i~~vi~sC 64 (74)
T COG3592 38 VFNLGRKPWIMPDAVDVEEIVKVIDTC 64 (74)
T ss_pred hcccCCCCccCCCCCCHHHHHHHHHhC
Confidence 556888889999999999999998753
No 83
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=29.26 E-value=71 Score=23.57 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.+||++-.+..++.-.+++|||+--..
T Consensus 47 ls~~Er~~l~~~~~~~~~~~~~vi~gv~~ 75 (281)
T cd00408 47 LTDEERKEVIEAVVEAVAGRVPVIAGVGA 75 (281)
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 46799999999999988899999997654
No 84
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=28.98 E-value=67 Score=26.98 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=34.8
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCccc
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMKM 92 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~m 92 (96)
|.-|-|+.+.||-||...|-++.+..+++-.-+|.+. +...+.|+
T Consensus 26 k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGr-ILKD~dTL 70 (493)
T KOG0010|consen 26 KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGR-ILKDDDTL 70 (493)
T ss_pred ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCc-cccChhhH
Confidence 6778999999999999999999988877766666654 44444444
No 85
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=28.74 E-value=71 Score=24.04 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERA 37 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~ 37 (96)
-|.|||.+-.+...+.-.+++|||+--.
T Consensus 50 Ls~eEr~~l~~~~~~~~~~~~pvi~gv~ 77 (289)
T cd00951 50 LTPDEYAQVVRAAVEETAGRVPVLAGAG 77 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEecC
Confidence 4679999999998888899999999654
No 86
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=28.18 E-value=1.7e+02 Score=20.05 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCc------ccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcCCC----CCeEEEE
Q 034364 15 RQAEAARIRDKYPDR------IPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSP----EKAIFIF 80 (96)
Q Consensus 15 R~~e~~~ir~kyP~k------IpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~----~~alfl~ 80 (96)
.+.|.+.+.+.-|.. +|||+|..+ .++.-.|.|....-+- +|++=|+++. +.-+|+|
T Consensus 45 ~k~ELe~L~~~lp~~~~~~lrLPIile~~~-----~~~~g~~~V~g~~e~k----~i~~ilg~~~~~~~~~~l~i~ 111 (132)
T PF01886_consen 45 DKEELERLAEILPEYEWSKLRLPIILEIDP-----TLGEGSYRVRGKEEVK----AISKILGKEREFEEEDELYIY 111 (132)
T ss_pred cHHHHHHHHHhCCHHHHhceeccEEEEEec-----cCCCceEEEeCHHHHH----HHHHHhCCCcccccCCeEEEc
Confidence 456777887777764 899999964 2334466777666332 2444445443 5666665
No 87
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=27.93 E-value=93 Score=20.01 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=22.0
Q ss_pred eEEecCCCchHhHHHHHhhhhcCC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIKLS 72 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~l~ 72 (96)
-..||.+++..+|..-||.+++++
T Consensus 15 ~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 15 YIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCC
Confidence 456999999999999999999996
No 88
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=27.64 E-value=86 Score=19.88 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=23.9
Q ss_pred EecCCCchHhHHHHHhhhhcCCCCCeEE
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPEKAIF 78 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~~alf 78 (96)
-||+..+++++...|.++|.+.++..-.
T Consensus 12 ~v~~g~~y~~L~~~ls~kL~l~~~~~~L 39 (78)
T cd06411 12 RAPRGADVSSLRALLSQALPQQAQRGQL 39 (78)
T ss_pred EccCCCCHHHHHHHHHHHhcCChhhcEE
Confidence 3788999999999999999998876443
No 89
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=26.86 E-value=85 Score=25.80 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=32.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 1 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 1 ~~~~~fK~~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
||+..|......++|.+++.+.....|+++||=+|=+.
T Consensus 216 mm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As 253 (445)
T cd01938 216 MMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAS 253 (445)
T ss_pred hhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecc
Confidence 56655656677899999999999999999999999975
No 90
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=26.64 E-value=82 Score=23.83 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||++-.+...+.-.+++|||+--..
T Consensus 51 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~ 79 (290)
T TIGR00683 51 LSTEEKKEIFRIAKDEAKDQIALIAQVGS 79 (290)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999999899888999999997643
No 91
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=26.33 E-value=84 Score=23.88 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERA 37 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~ 37 (96)
-|.|||++-.+...+.-.+++|||+--.
T Consensus 57 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~ 84 (303)
T PRK03620 57 LTPDEYSQVVRAAVETTAGRVPVIAGAG 84 (303)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 4679999999999988899999998554
No 92
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=26.24 E-value=89 Score=17.06 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.6
Q ss_pred HHHhhhhcCCCCCeEEEEEcC
Q 034364 63 YVVRKRIKLSPEKAIFIFVKN 83 (96)
Q Consensus 63 ~~irk~l~l~~~~alfl~Vnn 83 (96)
.-+++.+++.+++.+.+.+++
T Consensus 13 k~~~~~l~l~~Gd~v~i~~~~ 33 (47)
T PF04014_consen 13 KEIREKLGLKPGDEVEIEVEG 33 (47)
T ss_dssp HHHHHHTTSSTTTEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEeC
Confidence 347889999999999988775
No 93
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=26.00 E-value=84 Score=23.47 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 9 EHPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 9 ~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
.-|.+||++-.+..++..++++|||+--..
T Consensus 50 ~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 79 (292)
T PRK03170 50 TLTHEEHEELIRAVVEAVNGRVPVIAGTGS 79 (292)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEeecCC
Confidence 356799999999999999999999986654
No 94
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=25.93 E-value=63 Score=23.31 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCCcccEEEEccCCCCCCCcceeeEEecC
Q 034364 17 AEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPA 54 (96)
Q Consensus 17 ~e~~~ir~kyP~kIpVIvEr~~~~~lp~l~k~KflVp~ 54 (96)
...+++.+.||+ +.|++-.- =|.|+.++|++|.
T Consensus 165 ~gl~~l~~~~p~-v~i~~~~i----D~~l~~~~yi~PG 197 (209)
T PRK00129 165 EGIKALEEAHPD-VEIYTAAI----DEKLNEHGYIVPG 197 (209)
T ss_pred HHHHHHHHHCCC-cEEEEEee----cCCcCCCCcCCCC
Confidence 456778889997 77777332 2567888999996
No 95
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=25.27 E-value=87 Score=23.53 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.|||.+-.+...+...+++|||+--..
T Consensus 54 Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 54 LSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 35699999999999888999999996643
No 96
>PRK08577 hypothetical protein; Provisional
Probab=25.10 E-value=74 Score=21.24 Aligned_cols=21 Identities=5% Similarity=0.254 Sum_probs=18.3
Q ss_pred HHHhhhhcCCCCCeEEEEEcC
Q 034364 63 YVVRKRIKLSPEKAIFIFVKN 83 (96)
Q Consensus 63 ~~irk~l~l~~~~alfl~Vnn 83 (96)
.-+|+.|++.+++.+-+++++
T Consensus 19 ~~~r~~l~~~~g~~~~~~~~~ 39 (136)
T PRK08577 19 LEIREALGIREGMYVLLIADT 39 (136)
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 458999999999999998875
No 97
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=25.01 E-value=65 Score=19.47 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=14.2
Q ss_pred HHHHhhCCCcccEEEEcc
Q 034364 20 ARIRDKYPDRIPVIVERA 37 (96)
Q Consensus 20 ~~ir~kyP~kIpVIvEr~ 37 (96)
..+.++|-.+|||+.--.
T Consensus 40 ~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 40 PELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp HHHHHHSCTSTSEEEETT
T ss_pred HHHHHHhcCCCCEEEEcC
Confidence 347789999999988554
No 98
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=24.88 E-value=2.1e+02 Score=19.39 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=27.4
Q ss_pred eeeEEecCCCchHhHHHHHhhhhcCCCCC--eEEEEE
Q 034364 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEK--AIFIFV 81 (96)
Q Consensus 47 k~KflVp~~~tv~~f~~~irk~l~l~~~~--alfl~V 81 (96)
...+-+....|+.++...+-++++|...+ +||...
T Consensus 15 ~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~ 51 (207)
T smart00295 15 TLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFED 51 (207)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEc
Confidence 55788999999999999999999996443 444443
No 99
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=24.64 E-value=76 Score=23.65 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.+||+.-.+...+..+.++|||+--..
T Consensus 51 Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~ 79 (289)
T PF00701_consen 51 LTDEERKELLEIVVEAAAGRVPVIAGVGA 79 (289)
T ss_dssp S-HHHHHHHHHHHHHHHTTSSEEEEEEES
T ss_pred CCHHHHHHHHHHHHHHccCceEEEecCcc
Confidence 46799999888888888999999997654
No 100
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=24.29 E-value=1.3e+02 Score=19.13 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.8
Q ss_pred ceeeEEecC--CCchHhHHHHHhhhhcCC
Q 034364 46 DKKKYLVPA--DLTVGQFVYVVRKRIKLS 72 (96)
Q Consensus 46 ~k~KflVp~--~~tv~~f~~~irk~l~l~ 72 (96)
+...|.++. +.+..++..-++++.+++
T Consensus 10 d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 10 ESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 356789988 779999999999999998
No 101
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=23.98 E-value=1.7e+02 Score=17.55 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=26.5
Q ss_pred CcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCcc
Q 034364 44 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL 85 (96)
Q Consensus 44 ~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~l 85 (96)
...+.+.-|.+..++.|+...--++.+++++ .-.|.-|++.
T Consensus 5 ~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~-~~~L~h~~k~ 45 (65)
T PF11470_consen 5 NFRRFKVKVTPNTTLNQVLEEACKKFGLDPS-SYDLKHNNKP 45 (65)
T ss_dssp TS-EEEE---TTSBHHHHHHHHHHHTT--GG-G-EEEETTEE
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHcCCCcc-ceEEEECCEE
Confidence 3457788899999999999999999999988 4445555544
No 102
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=23.84 E-value=66 Score=17.28 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=10.1
Q ss_pred cCCCchHhHHHHHhh
Q 034364 53 PADLTVGQFVYVVRK 67 (96)
Q Consensus 53 p~~~tv~~f~~~irk 67 (96)
|.++||+|+..++-.
T Consensus 1 p~sltV~~Lk~iL~~ 15 (35)
T PF12949_consen 1 PKSLTVAQLKRILDE 15 (35)
T ss_dssp STT--SHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHH
Confidence 678999998887753
No 103
>PF15130 DUF4566: Domain of unknown function (DUF4566)
Probab=23.75 E-value=36 Score=25.66 Aligned_cols=45 Identities=27% Similarity=0.507 Sum_probs=28.5
Q ss_pred eeEEecCCCchHhHHHHHhhh----hcC-CCCCeEEEEEcC-cc--CCCCccc
Q 034364 48 KKYLVPADLTVGQFVYVVRKR----IKL-SPEKAIFIFVKN-IL--PPTGMKM 92 (96)
Q Consensus 48 ~KflVp~~~tv~~f~~~irk~----l~l-~~~~alfl~Vnn-~l--p~~~~~m 92 (96)
.||-...-.--.||++++-.+ +.+ +|++++|+|++. .+ |.+-++|
T Consensus 154 ~kFeFhh~dyekQ~lh~lsrkdk~g~VlnNP~QsvFlfidrq~l~tpk~ka~~ 206 (241)
T PF15130_consen 154 QKFEFHHGDYEKQFLHVLSRKDKPGAVLNNPEQSVFLFIDRQQLQTPKNKATM 206 (241)
T ss_pred hheeeccchHHHHHHHHHhcccCCCceecCCCceEEEEEeHhhhCCcchhhHH
Confidence 345555444556888877655 234 699999999974 33 6654554
No 104
>PLN02417 dihydrodipicolinate synthase
Probab=22.98 E-value=1.1e+02 Score=23.03 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
-|.+||.+-.+...+.-.+++|||+--..
T Consensus 51 ls~~Er~~~~~~~~~~~~~~~pvi~gv~~ 79 (280)
T PLN02417 51 MSWDEHIMLIGHTVNCFGGKIKVIGNTGS 79 (280)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 46799999888888888999999987654
No 105
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=22.50 E-value=1.1e+02 Score=22.65 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 034364 9 EHPLERRQAEAARIRDKYPDRIPVIVERAE 38 (96)
Q Consensus 9 ~~~~e~R~~e~~~ir~kyP~kIpVIvEr~~ 38 (96)
.-|.+||++-.+..++...+++|||+--..
T Consensus 49 ~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~ 78 (284)
T cd00950 49 TLSDEEHEAVIEAVVEAVNGRVPVIAGTGS 78 (284)
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEeccCC
Confidence 356799999999999998999999986654
No 106
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=22.34 E-value=1.9e+02 Score=18.75 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=25.4
Q ss_pred EecCCCchHhHHHHHhhhhcCCCC----CeEEEEEcC
Q 034364 51 LVPADLTVGQFVYVVRKRIKLSPE----KAIFIFVKN 83 (96)
Q Consensus 51 lVp~~~tv~~f~~~irk~l~l~~~----~alfl~Vnn 83 (96)
-|-.+.+.+++...+-++|+|+.+ -+||+..+.
T Consensus 17 ~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~~ 53 (87)
T cd01777 17 RVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVINH 53 (87)
T ss_pred EEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEecc
Confidence 355677888999999999999876 567776554
No 107
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=22.20 E-value=88 Score=20.40 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhCCCcccE
Q 034364 13 ERRQAEAARIRDKYPDRIPV 32 (96)
Q Consensus 13 e~R~~e~~~ir~kyP~kIpV 32 (96)
.++++..+.|++|+-+.|||
T Consensus 35 q~~q~Wl~sI~ekd~nlvPI 54 (92)
T PF15243_consen 35 QQHQAWLQSIAEKDNNLVPI 54 (92)
T ss_pred HHHHHHHHHHHHhccCcCcc
Confidence 56788999999999999886
No 108
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=21.87 E-value=1.9e+02 Score=17.33 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=32.0
Q ss_pred CCCcceeeEEecCCCchHhHHHHHhhhhcCCCCCeEEEEEc-CccCCCCcccc
Q 034364 42 VPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK-NILPPTGMKMA 93 (96)
Q Consensus 42 lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~alfl~Vn-n~lp~~~~~m~ 93 (96)
+|+-....--|-+.+|+.++..-+=++-+|+++.-.-..++ +.....++..+
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGG
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCcee
Confidence 55555666678889999999999999999998765433344 33344444443
No 109
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=21.70 E-value=1.1e+02 Score=15.62 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhCCC
Q 034364 12 LERRQAEAARIRDKYPD 28 (96)
Q Consensus 12 ~e~R~~e~~~ir~kyP~ 28 (96)
|-+|.++....-.+||+
T Consensus 12 FY~rlk~Ike~Hrr~Pn 28 (28)
T PF12108_consen 12 FYERLKEIKEYHRRYPN 28 (28)
T ss_dssp HHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 56788998888888886
No 110
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=21.60 E-value=99 Score=19.29 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=25.5
Q ss_pred eEEecCCCchHhHHHHHhhhhc-CCCCCeEE-EEEcCccCC
Q 034364 49 KYLVPADLTVGQFVYVVRKRIK-LSPEKAIF-IFVKNILPP 87 (96)
Q Consensus 49 KflVp~~~tv~~f~~~irk~l~-l~~~~alf-l~Vnn~lp~ 87 (96)
-|+||.+.+.+++...||+-.+ +=.+-.+| .|-+..+|+
T Consensus 11 S~~v~~~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~ 51 (94)
T PF03147_consen 11 SFVVPEDVPFADIEEVIRSAGGPLLESVELFDVYRGEKLPE 51 (94)
T ss_dssp EEEEETTS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGT
T ss_pred EEEECCCCCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCC
Confidence 5899999999999999997763 11122222 466666654
No 111
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=21.48 E-value=79 Score=24.85 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHh-hCCCcccEEEE
Q 034364 13 ERRQAEAARIRD-KYPDRIPVIVE 35 (96)
Q Consensus 13 e~R~~e~~~ir~-kyP~kIpVIvE 35 (96)
+||.+......+ +-||||||++-
T Consensus 3 ~er~eR~~~~~~g~~~DRvP~~~~ 26 (378)
T cd03308 3 QERVQRLKDAIEGKKPDRVPILSQ 26 (378)
T ss_pred HHHHHHHHHHHcCCCCCceeecch
Confidence 677777665554 56999999873
No 112
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=20.79 E-value=95 Score=20.83 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHhhCCCc
Q 034364 10 HPLERRQAEAARIRDKYPDR 29 (96)
Q Consensus 10 ~~~e~R~~e~~~ir~kyP~k 29 (96)
..||.|...-+..|.||||-
T Consensus 33 l~fek~i~kN~e~R~K~~dd 52 (108)
T PF08216_consen 33 LSFEKRINKNQEMRIKYPDD 52 (108)
T ss_pred HHHHHHHHHhHHHHHhCCCC
Confidence 35899999999999999874
No 113
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=20.67 E-value=2.2e+02 Score=17.42 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=37.7
Q ss_pred CCCcceeeEEecCCCchHhHHHHHhhhhcCCCCC-eEEEEEcC--ccCCCCccccc
Q 034364 42 VPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEK-AIFIFVKN--ILPPTGMKMAS 94 (96)
Q Consensus 42 lp~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~-alfl~Vnn--~lp~~~~~m~~ 94 (96)
+|+=....--|-+.+|+.+...-+-++-+++++. .+|+..++ ..+..++.++.
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~~~d~~~ 61 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLDTDSSS 61 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCchhhhhh
Confidence 5666667778889999999999999999998764 45555445 44555554443
No 114
>PRK04115 hypothetical protein; Provisional
Probab=20.63 E-value=3.1e+02 Score=19.16 Aligned_cols=56 Identities=20% Similarity=0.374 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCC-----cccEEEEccCCCCCCCcceeeEEecCCCchHhHHHHHhhhhcC----CCCCeEEEE
Q 034364 16 QAEAARIRDKYPD-----RIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKL----SPEKAIFIF 80 (96)
Q Consensus 16 ~~e~~~ir~kyP~-----kIpVIvEr~~~~~lp~l~k~KflVp~~~tv~~f~~~irk~l~l----~~~~alfl~ 80 (96)
+.|.+.+.+--|+ |+|+|+|..+.. ..-.|.|....-|- +|.+=|+. ..+..+|+|
T Consensus 49 r~ELe~L~~~l~~~~~~lrLPIile~~~~~-----~~g~~~VrG~~evk----~IskiLg~~~~~~e~~~l~ly 113 (137)
T PRK04115 49 RRELEFLKELLDEDACRLRLPIILEIDSSL-----GEGAIVVRGKEEVK----VISKILGKEDIFSEEDILYLY 113 (137)
T ss_pred HHHHHHHHHhccchhhheeeeEEEEEecCC-----CceEEEEcCHHHHH----HHHHHhCccccccCCCEEEEe
Confidence 3455555544443 599999998522 12356666666333 34444443 456666765
No 115
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=20.60 E-value=1.1e+02 Score=17.59 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=28.1
Q ss_pred ecCCCchHhHHHHHhhhhcCCCCCeEEEEEcCccCCCCcc
Q 034364 52 VPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGMK 91 (96)
Q Consensus 52 Vp~~~tv~~f~~~irk~l~l~~~~alfl~Vnn~lp~~~~~ 91 (96)
+|...|+.+|.+-|...|. +.+++-.||+..-..+..
T Consensus 13 ~~~g~T~~d~A~~I~~~l~---~~~~~A~Vng~~vdl~~~ 49 (60)
T PF02824_consen 13 LPEGSTVLDVAYSIHSSLA---KRAVAAKVNGQLVDLDHP 49 (60)
T ss_dssp EETTBBHHHHHHHHSHHHH---HCEEEEEETTEEEETTSB
T ss_pred CCCCCCHHHHHHHHCHHHH---hheeEEEEcCEECCCCCC
Confidence 8999999999999887764 467778899865444333
No 116
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=20.15 E-value=41 Score=21.24 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=14.8
Q ss_pred ecCCCchHhHHH-HHhhhhcCCC
Q 034364 52 VPADLTVGQFVY-VVRKRIKLSP 73 (96)
Q Consensus 52 Vp~~~tv~~f~~-~irk~l~l~~ 73 (96)
=...+|+++|+. +++++|++.+
T Consensus 5 d~~~~TL~~lv~~Vlk~~Lg~~~ 27 (87)
T PF14732_consen 5 DTKKMTLGDLVEKVLKKKLGMNE 27 (87)
T ss_dssp -TTT-BHHHHHHHCCCCCS--SS
T ss_pred echhCcHHHHHHHHHHhccCCCC
Confidence 356789999999 5678999875
Done!